Index of /runs/CPTAC3_LSCC_DWG/CPTAC3-LSCC-Broad/MutSig2CV

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[PARENTDIR]Parent Directory  -  
[IMG]CDKN2A.stick_fig.jpg2020-09-24 15:40 31K 
[ ]CDKN2A.stick_fig.pdf2020-09-24 15:40 3.8K 
[TXT]CDKN2A.stick_fig.txt2020-09-24 00:15 781  
[IMG]KEAP1.stick_fig.jpg2020-09-24 15:40 38K 
[ ]KEAP1.stick_fig.pdf2020-09-24 15:40 4.6K 
[TXT]KEAP1.stick_fig.txt2020-09-24 00:16 1.3K 
[IMG]KMT2D.stick_fig.jpg2020-09-24 15:40 71K 
[ ]KMT2D.stick_fig.pdf2020-09-24 15:40 5.9K 
[TXT]KMT2D.stick_fig.txt2020-09-24 00:15 2.7K 
[ ]LSCC-WXS-TP_NB.final_analysis_set.maf2020-09-24 15:40 100M 
[ ]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_CCG_histogram.ai2020-09-24 15:33 243K 
[ ]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_CCG_histogram.fig2020-09-24 15:33 49K 
[IMG]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_CCG_histogram.png2020-09-24 15:33 16K 
[ ]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_coverage.fig2020-09-24 15:33 10K 
[IMG]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_coverage.png2020-09-24 15:33 13K 
[ ]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_histogram.ai2020-09-24 15:33 36K 
[ ]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_histogram.fig2020-09-24 15:33 17K 
[IMG]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_histogram.png2020-09-24 15:33 14K 
[TXT]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_legos.html2020-09-24 15:33 7.5K 
[ ]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_legos.ps2020-09-24 15:33 43M 
[ ]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_orientation_alt_counts.ai2020-09-24 15:32 474K 
[ ]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_orientation_alt_counts.fig2020-09-24 15:32 28K 
[IMG]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_orientation_alt_counts.png2020-09-24 15:32 34K 
[ ]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_orientation_weighted_mutations.ai2020-09-24 15:32 474K 
[ ]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_orientation_weighted_mutations.fig2020-09-24 15:32 30K 
[IMG]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_orientation_weighted_mutations.png2020-09-24 15:32 35K 
[ ]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile.ai2020-09-24 15:40 263K 
[ ]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile.fig2020-09-24 15:31 21K 
[IMG]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile.png2020-09-24 15:40 45K 
[ ]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile_AF.ai2020-09-24 15:40 846K 
[ ]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile_AF.fig2020-09-24 15:33 28K 
[IMG]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile_AF.png2020-09-24 15:40 47K 
[ ]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile_counts.ai2020-09-24 15:31 258K 
[ ]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile_counts.fig2020-09-24 15:31 20K 
[IMG]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile_counts.png2020-09-24 15:31 40K 
[ ]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile_normalized.ai2020-09-24 15:32 263K 
[ ]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile_normalized.fig2020-09-24 15:32 21K 
[IMG]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile_normalized.png2020-09-24 15:32 41K 
[ ]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile_samples_1-12.ai2020-09-24 15:31 2.6M 
[ ]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile_samples_1-12.fig2020-09-24 15:31 81K 
[IMG]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile_samples_1-12.png2020-09-24 15:31 65K 
[ ]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile_samples_13-24.ai2020-09-24 15:32 2.6M 
[ ]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile_samples_13-24.fig2020-09-24 15:32 79K 
[IMG]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile_samples_13-24.png2020-09-24 15:32 65K 
[ ]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile_samples_25-36.ai2020-09-24 15:32 2.6M 
[ ]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile_samples_25-36.fig2020-09-24 15:32 81K 
[IMG]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile_samples_25-36.png2020-09-24 15:32 65K 
[ ]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile_samples_37-48.ai2020-09-24 15:32 2.6M 
[ ]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile_samples_37-48.fig2020-09-24 15:32 81K 
[IMG]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile_samples_37-48.png2020-09-24 15:32 67K 
[ ]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile_samples_49-60.ai2020-09-24 15:32 2.6M 
[ ]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile_samples_49-60.fig2020-09-24 15:32 80K 
[IMG]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile_samples_49-60.png2020-09-24 15:32 64K 
[ ]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile_samples_61-72.ai2020-09-24 15:32 2.6M 
[ ]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile_samples_61-72.fig2020-09-24 15:32 80K 
[IMG]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile_samples_61-72.png2020-09-24 15:32 65K 
[ ]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile_samples_73-84.ai2020-09-24 15:32 2.6M 
[ ]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile_samples_73-84.fig2020-09-24 15:32 81K 
[IMG]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile_samples_73-84.png2020-09-24 15:32 66K 
[ ]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile_samples_85-96.ai2020-09-24 15:32 2.6M 
[ ]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile_samples_85-96.fig2020-09-24 15:32 80K 
[IMG]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile_samples_85-96.png2020-09-24 15:32 64K 
[ ]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile_samples_97-108.ai2020-09-24 15:32 2.6M 
[ ]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile_samples_97-108.fig2020-09-24 15:32 80K 
[IMG]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile_samples_97-108.png2020-09-24 15:32 64K 
[ ]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile_samples_109-113.ai2020-09-24 15:32 1.1M 
[ ]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile_samples_109-113.fig2020-09-24 15:32 34K 
[IMG]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_profile_samples_109-113.png2020-09-24 15:32 32K 
[TXT]LSCC-WXS-TP_NB.final_analysis_set.maf.mutation_spectrum.txt2020-09-24 15:33 92K 
[ ]LSCC-WXS-TP_NB_coMut.pdf2020-09-24 15:40 32K 
[IMG]LSCC-WXS-TP_NB_coMut.png2020-09-24 15:40 70K 
[TXT]MutSig_version.txt2020-09-24 00:10 25  
[IMG]NFE2L2.stick_fig.jpg2020-09-24 15:40 47K 
[ ]NFE2L2.stick_fig.pdf2020-09-24 15:40 4.5K 
[TXT]NFE2L2.stick_fig.txt2020-09-24 00:16 1.5K 
[IMG]PTEN.stick_fig.jpg2020-09-24 15:40 41K 
[ ]PTEN.stick_fig.pdf2020-09-24 15:40 4.1K 
[TXT]PTEN.stick_fig.txt2020-09-24 00:15 1.1K 
[IMG]TP53.stick_fig.jpg2020-09-24 15:40 136K 
[ ]TP53.stick_fig.pdf2020-09-24 15:40 12K 
[TXT]TP53.stick_fig.txt2020-09-24 00:14 9.3K 
[IMG]USP13.stick_fig.jpg2020-09-24 15:40 32K 
[ ]USP13.stick_fig.pdf2020-09-24 15:40 4.1K 
[TXT]USP13.stick_fig.txt2020-09-24 00:15 918  
[ ]dcc_archive.properties2020-09-24 15:40 1  
[TXT]dcc_archive_manifest.tsv2020-09-24 15:40 1.5K 
[TXT]discrepant_coding_effect_genes.txt2020-09-24 00:10 411  
[ ]gcs_delocalization.sh2020-09-24 00:14 4.0K 
[ ]gcs_localization.sh2020-09-24 00:14 2.5K 
[ ]gcs_transfer.sh2020-09-24 15:40 13K 
[TXT]generatedStickFigurePaths.txt2020-09-24 00:16 559  
[TXT]mutcateg_discovery.txt2020-09-24 00:04 1.5K 
[TXT]mutcategs.txt2020-09-24 15:40 642  
[ ]nozzle.RData2020-09-24 15:40 64K 
[TXT]nozzle.html2020-09-24 15:40 163K 
[TXT]params.txt2020-09-24 00:02 1.1K 
[TXT]patient_counts_and_rates.txt2020-09-24 15:40 19K 
[ ]results.mat2020-09-24 00:10 14M 
[TXT]sample_sig_gene_table.txt2020-09-24 00:10 4.5K 
[TXT]sample_sig_gene_table_orig.txt2020-09-24 00:10 16K 
[ ]script2020-09-24 00:14 5.8K 
[TXT]sig_genes.txt2020-09-24 15:40 1.1M 
[TXT]sig_genes_orig.txt2020-09-24 00:10 1.2M 
[TXT]stderr2020-09-24 00:14 0  
[TXT]stdout2020-09-24 00:16 12K