| Pipeline | Not Ready | Failed | Succeed |
|---|
| 1 | Aggregate_Clusters | 0 | 0 | 0 |
| 2 | Clinical_Aggregate_Tier1 | 0 | 0 | 1 |
| 3 | Clinical_Pick_Tier1 | 0 | 0 | 1 |
| 4 | CopyNumber_GeneBySample | 0 | 0 | 1 |
| 5 | CopyNumber_Gistic2 | 0 | 0 | 1 |
| 6 | CopyNumber_Preprocess | 0 | 0 | 1 |
| 7 | Correlate_Clinical_vs_miR | 1 | 0 | 0 |
| 8 | Correlate_Clinical_vs_Molecular_Signatures | 1 | 0 | 0 |
| 9 | Correlate_Clinical_vs_mRNA | 0 | 0 | 1 |
| 10 | Correlate_Clinical_vs_Mutation | 1 | 0 | 0 |
| 11 | Correlate_CopyNumber_vs_miR | 1 | 0 | 0 |
| 12 | Correlate_CopyNumber_vs_mRNA | 0 | 0 | 1 |
| 13 | Correlate_GenomicEvents | 1 | 0 | 0 |
| 14 | Correlate_Methylation_vs_mRNA | 0 | 0 | 1 |
| 15 | miR_Clustering_CNMF | 1 | 0 | 0 |
| 16 | miR_Clustering_Consensus | 1 | 0 | 0 |
| 17 | miR_FindDirectTargets | 1 | 0 | 0 |
| 18 | mRNA_Clustering_CNMF | 0 | 0 | 1 |
| 19 | mRNA_Clustering_Consensus | 0 | 0 | 1 |
| 20 | mRNA_Preprocess_Median | 0 | 0 | 1 |
| 21 | Mutation_Assessor | 1 | 0 | 0 |
| 22 | Mutation_Significance | 1 | 0 | 0 |
| 23 | Pathway_FindEnrichedGenes | 1 | 0 | 0 |
| 24 | Pathway_Paradigm | 0 | 0 | 1 |
| Total | 11 | 0 | 12 |