Summary of TCGA Tumor Data
Ingested into Broad GDAC Pipeline
04/21/2011 Run
| TumorType | Biospecimen | Any_Level_1 | Clinical | CNA | Methylation | mRNA | miR | MAF |
|---|
| BLCA | 26 | 12 | 9 | 9 | 0 | 0 | 0 | 0 |
| BRCA | 647 | 390 | 353 | 375 | 186 | 434 | 0 | 0 |
| CESC | 23 | 8 | 5 | 8 | 0 | 0 | 0 | 0 |
| COAD | 245 | 151 | 207 | 182 | 167 | 155 | 0 | 88 |
| COADREAD | 338 | 203 | 285 | 253 | 236 | 224 | 0 | 139 |
| GBM | 508 | 476 | 465 | 466 | 288 | 506 | 415 | 199 |
| HNSC | 59 | 59 | 0 | 57 | 0 | 0 | 0 | 0 |
| KIRC | 460 | 347 | 192 | 345 | 219 | 72 | 0 | 0 |
| KIRP | 75 | 16 | 17 | 16 | 36 | 41 | 0 | 0 |
| LAML | 202 | 0 | 0 | 0 | 188 | 0 | 178 | 135 |
| LGG | 30 | 0 | 19 | 0 | 0 | 0 | 0 | 0 |
| LIHC | 38 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| LUAD | 158 | 21 | 47 | 56 | 128 | 33 | 0 | 0 |
| LUSC | 184 | 161 | 72 | 142 | 133 | 134 | 0 | 0 |
| OV | 592 | 570 | 528 | 519 | 425 | 570 | 566 | 383 |
| PRAD | 65 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| READ | 93 | 52 | 78 | 71 | 69 | 69 | 0 | 51 |
| STAD | 111 | 35 | 0 | 81 | 82 | 0 | 0 | 0 |
| THCA | 39 | 25 | 0 | 24 | 0 | 0 | 0 | 0 |
| UCEC | 298 | 24 | 127 | 133 | 70 | 0 | 0 | 0 |
| Totals | 3853 | 2347 | 2119 | 2484 | 1991 | 2014 | 1159 | 856 |