Summary of TCGA Tumor Data
Ingested into Broad GDAC Pipeline
2011_05_25 Run
| TumorType | Biospecimen | Any_Level_1 | Clinical | CNA | Methylation | mRNA | miR | MAF |
|---|
|
| BLCA | 35 | 12 | 11 | 9 | 0 | 0 | 0 | 0 |
| BRCA | 704 | 524 | 358 | 507 | 186 | 434 | 0 | 0 |
| CESC | 40 | 8 | 5 | 8 | 0 | 0 | 0 | 0 |
| COAD | 245 | 202 | 208 | 186 | 167 | 155 | 0 | 88 |
| COADREAD | 338 | 276 | 287 | 257 | 236 | 224 | 0 | 139 |
| GBM | 547 | 511 | 465 | 498 | 288 | 499 | 415 | 199 |
| HNSC | 97 | 59 | 0 | 57 | 0 | 0 | 0 | 0 |
| KIRC | 460 | 453 | 241 | 448 | 219 | 72 | 0 | 0 |
| KIRP | 75 | 16 | 17 | 16 | 36 | 41 | 0 | 0 |
| LAML | 202 | 0 | 0 | 0 | 188 | 0 | 178 | 135 |
| LGG | 58 | 30 | 19 | 30 | 0 | 0 | 0 | 0 |
| LIHC | 45 | 38 | 0 | 37 | 0 | 0 | 0 | 0 |
| LUAD | 158 | 59 | 47 | 58 | 128 | 33 | 0 | 122 |
| LUSC | 184 | 184 | 72 | 142 | 133 | 134 | 0 | 150 |
| OV | 592 | 570 | 528 | 519 | 425 | 570 | 566 | 383 |
| PRAD | 65 | 65 | 0 | 64 | 0 | 0 | 0 | 0 |
| READ | 93 | 74 | 79 | 71 | 69 | 69 | 0 | 51 |
| STAD | 111 | 35 | 0 | 81 | 82 | 0 | 0 | 0 |
| THCA | 39 | 25 | 0 | 24 | 0 | 0 | 0 | 0 |
| UCEC | 325 | 220 | 127 | 215 | 70 | 0 | 0 | 0 |
| Totals | 4075 | 3085 | 2177 | 2970 | 1991 | 2007 | 1159 | 1128 |
Note that aggregate tumor sets (like COADREAD) are not counted twice.