Summary of TCGA Tumor Data
Ingested into Broad GDAC Pipeline
2011_07_28 Run
| TumorType | Biospecimen | Any_Level_1 | Clinical | CNA | Methylation | mRNA | miR | MAF |
|---|
|
| BLCA | 38 | 26 | 25 | 32 | 0 | 0 | 0 | 0 |
| BRCA | 814 | 662 | 547 | 703 | 186 | 533 | 0 | 0 |
| CESC | 42 | 23 | 5 | 23 | 0 | 0 | 0 | 0 |
| COAD | 392 | 202 | 249 | 317 | 167 | 155 | 0 | 158 |
| COADREAD | 546 | 276 | 336 | 437 | 236 | 224 | 0 | 227 |
| GBM | 601 | 550 | 501 | 537 | 288 | 543 | 491 | 186 |
| HNSC | 130 | 97 | 23 | 95 | 0 | 0 | 0 | 0 |
| KIRC | 502 | 475 | 461 | 489 | 219 | 72 | 0 | 0 |
| KIRP | 75 | 43 | 38 | 43 | 36 | 16 | 0 | 0 |
| LAML | 202 | 0 | 0 | 0 | 188 | 0 | 178 | 0 |
| LGG | 58 | 30 | 11 | 58 | 0 | 27 | 0 | 0 |
| LIHC | 55 | 38 | 0 | 44 | 0 | 0 | 0 | 0 |
| LUAD | 237 | 85 | 118 | 126 | 128 | 33 | 0 | 120 |
| LUSC | 213 | 184 | 144 | 165 | 133 | 155 | 0 | 160 |
| OV | 592 | 570 | 580 | 519 | 425 | 570 | 566 | 377 |
| PAAD | 7 | 7 | 0 | 7 | 0 | 0 | 0 | 0 |
| PRAD | 83 | 65 | 0 | 82 | 0 | 0 | 0 | 0 |
| READ | 154 | 74 | 87 | 120 | 69 | 69 | 0 | 69 |
| STAD | 132 | 111 | 0 | 109 | 82 | 0 | 0 | 0 |
| THCA | 86 | 39 | 0 | 59 | 0 | 0 | 0 | 0 |
| UCEC | 384 | 220 | 274 | 283 | 70 | 54 | 0 | 0 |
| Totals | 4797 | 3501 | 3063 | 3811 | 1991 | 2227 | 1235 | 1070 |
Note that aggregate tumor sets (like COADREAD) are not counted twice.