Summary of TCGA Tumor Data
Ingested into Broad GDAC Pipeline
2011_09_21 Run
TumorType | Biospecimen | Any_Level_1 | Clinical | CNA | Methylation | mRNA | miR | MAF |
---|
BLCA | 47 | 26 | 26 | 35 | 0 | 0 | 0 | 0 |
BRCA | 827 | 662 | 771 | 703 | 316 | 533 | 0 | 0 |
CESC | 50 | 23 | 6 | 36 | 0 | 0 | 0 | 0 |
COAD | 423 | 202 | 354 | 375 | 167 | 155 | 0 | 158 |
COADREAD | 591 | 276 | 477 | 520 | 236 | 224 | 0 | 227 |
DLBC | 10 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
GBM | 600 | 550 | 508 | 537 | 288 | 543 | 491 | 186 |
HNSC | 170 | 97 | 105 | 127 | 0 | 0 | 0 | 0 |
KIRC | 502 | 475 | 494 | 489 | 219 | 72 | 0 | 0 |
KIRP | 107 | 43 | 44 | 43 | 36 | 16 | 0 | 0 |
LAML | 202 | 0 | 0 | 0 | 188 | 0 | 178 | 0 |
LGG | 80 | 30 | 60 | 58 | 0 | 27 | 0 | 0 |
LIHC | 59 | 38 | 0 | 53 | 0 | 0 | 0 | 0 |
LNNH | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
LUAD | 270 | 85 | 160 | 172 | 128 | 33 | 0 | 120 |
LUSC | 229 | 184 | 206 | 194 | 133 | 155 | 0 | 160 |
OV | 592 | 570 | 580 | 519 | 519 | 570 | 566 | 304 |
PAAD | 14 | 7 | 0 | 14 | 0 | 0 | 0 | 0 |
PRAD | 101 | 65 | 0 | 82 | 0 | 0 | 0 | 0 |
READ | 168 | 74 | 123 | 145 | 69 | 69 | 0 | 69 |
STAD | 149 | 111 | 121 | 149 | 82 | 0 | 0 | 0 |
THCA | 109 | 39 | 0 | 59 | 0 | 0 | 0 | 0 |
UCEC | 402 | 220 | 297 | 283 | 117 | 54 | 0 | 0 |
Totals | 5113 | 3501 | 3855 | 4073 | 2262 | 2227 | 1235 | 997 |
Note that aggregate tumor sets (like COADREAD) are not counted twice.