Summary of TCGA Tumor Data
Ingested into Broad GDAC Pipeline
2011_10_26 Run
| TumorType | Biospecimen | Any_Level_1 | Clinical | CNA | Methylation | mRNA | miR | MAF |
|---|
|
| BLCA | 54 | 26 | 26 | 35 | 0 | 0 | 0 | 0 |
| BRCA | 844 | 662 | 810 | 703 | 316 | 533 | 0 | 522 |
| CESC | 75 | 23 | 6 | 36 | 0 | 0 | 0 | 0 |
| COADREAD | 591 | 276 | 555 | 520 | 236 | 224 | 0 | 227 |
| DLBC | 10 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| GBM | 600 | 550 | 534 | 537 | 288 | 543 | 491 | 276 |
| HNSC | 241 | 97 | 160 | 127 | 0 | 0 | 0 | 0 |
| KIRC | 502 | 475 | 497 | 489 | 219 | 72 | 0 | 0 |
| KIRP | 107 | 43 | 49 | 43 | 36 | 16 | 0 | 0 |
| LAML | 202 | 0 | 0 | 0 | 188 | 0 | 178 | 0 |
| LGG | 80 | 30 | 63 | 58 | 0 | 27 | 0 | 0 |
| LIHC | 59 | 38 | 0 | 53 | 0 | 0 | 0 | 0 |
| LNNH | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| LUAD | 270 | 85 | 195 | 172 | 128 | 33 | 0 | 258 |
| LUSC | 229 | 184 | 210 | 194 | 133 | 155 | 0 | 188 |
| OV | 592 | 570 | 580 | 519 | 519 | 570 | 566 | 316 |
| PAAD | 14 | 7 | 0 | 14 | 0 | 0 | 0 | 0 |
| PRAD | 101 | 65 | 0 | 82 | 0 | 0 | 0 | 0 |
| STAD | 149 | 111 | 148 | 149 | 82 | 0 | 0 | 0 |
| THCA | 133 | 39 | 0 | 85 | 0 | 0 | 0 | 0 |
| UCEC | 421 | 220 | 341 | 283 | 117 | 54 | 0 | 239 |
| Totals | 5276 | 3501 | 4174 | 4099 | 2262 | 2227 | 1235 | 2026 |
Note that although MAFs are listed for many tumor types, due to processing errors resulting
from manual collection of MAFs in October 2011 we were only able to complete (and post to
the DCC) mutation significance runs for UCEC.