| Tumor | BCR | Clinical | CN | Methylation | mRNA | mRNAseq | miR | miRseq | MAF |
| COADREAD | 591 | 576 | 520 | 236 | 224 | 78 | 0 | 255 | 224 |
| Pipeline | Not Ready | Failed | Succeeded | |
|---|---|---|---|---|
| 0 | Aggregate_Clusters | 0 | 0 | 1 |
| 1 | CopyNumber_GeneBySample | 0 | 0 | 1 |
| 2 | CopyNumber_Gistic2 | 0 | 0 | 1 |
| 3 | CopyNumber_Preprocess | 0 | 0 | 1 |
| 4 | Correlate_CopyNumber_vs_miR | 1 | 0 | 0 |
| 5 | Correlate_CopyNumber_vs_mRNA | 0 | 0 | 1 |
| 6 | Correlate_Methylation_vs_mRNA | 0 | 0 | 1 |
| 7 | Methylation_Clustering_CNMF | 0 | 0 | 1 |
| 8 | Methylation_Preprocess | 0 | 0 | 1 |
| 9 | miR_Clustering_CNMF | 1 | 0 | 0 |
| 10 | miR_Clustering_Consensus | 1 | 0 | 0 |
| 11 | miR_FindDirectTargets | 1 | 0 | 0 |
| 12 | mRNA_Clustering_CNMF | 0 | 0 | 1 |
| 13 | mRNA_Clustering_Consensus | 0 | 0 | 1 |
| 14 | mRNA_Preprocess_Median | 0 | 0 | 1 |
| 15 | Mutation_Assessor | 0 | 0 | 1 |
| 16 | Mutation_Significance | 0 | 0 | 1 |
| 17 | Pathway_FindEnrichedGenes | 0 | 0 | 1 |
| 18 | Pathway_Paradigm | 0 | 0 | 1 |
| Total | 4 | 0 | 15 |