rank geneset description genes N_genes mut_tally N n npat nsite nsil n1 n2 n3 n4 n5 n6 p q 1 HSA04020_CALCIUM_SIGNALING_PATHWAY Genes involved in calcium signaling pathway ADCY1, ADCY2, ADCY3, ADCY4, ADCY7, ADCY8, ADCY9, ADORA2A, ADORA2B, ADRA1A, ADRA1B, ADRA1D, ADRB1, ADRB2, ADRB3, AGTR1, ATP2A1, ATP2A2, ATP2A3, ATP2B1, ATP2B2, ATP2B3, ATP2B4, AVPR1A, AVPR1B, BDKRB1, BDKRB2, BST1, CACNA1A, CACNA1B, CACNA1C, CACNA1D, CACNA1E, CACNA1F, CACNA1G, CACNA1H, CACNA1I, CACNA1S, CALM1, CALM2, CALM3, CALML3, CALML6, CAMK2A, CAMK2B, CAMK2D, CAMK2G, CAMK4, CCKAR, CCKBR, CD38, CHP, CHRM1, CHRM2, CHRM3, CHRM5, CHRNA7, CYSLTR1, CYSLTR2, DRD1, EDNRA, EDNRB, EGFR, ERBB2, ERBB3, ERBB4, F2R, GNA11, GNA14, GNA15, GNAL, GNAQ, GNAS, GRIN1, GRIN2A, GRIN2C, GRIN2D, GRM1, GRM5, GRPR, HRH1, HRH2, HTR2A, HTR2B, HTR2C, HTR4, HTR5A, HTR6, HTR7, ITPKA, ITPKB, ITPR1, ITPR2, ITPR3, LHCGR, LTB4R2, MLCK, MYLK, MYLK2, NOS1, NOS2A, NOS3, NTSR1, OXTR, P2RX1, P2RX2, P2RX3, P2RX4, P2RX5, P2RX7, P2RXL1, PDE1A, PDE1B, PDE1C, PDGFRA, PDGFRB, PHKA1, PHKA2, PHKB, PHKG1, PHKG2, PLCB1, PLCB2, PLCB3, PLCB4, PLCD1, PLCD3, PLCD4, PLCE1, PLCG1, PLCG2, PLCZ1, PLN, PPID, PPP3CA, PPP3CB, PPP3CC, PPP3R1, PPP3R2, PRKACA, PRKACB, PRKACG, PRKCA, PRKCB1, PRKCG, PRKX, PRKY, PTAFR, PTGER1, PTGER3, PTGFR, PTK2B, RYR1, RYR2, RYR3, SLC25A4, SLC25A5, SLC25A6, SLC8A1, SLC8A2, SLC8A3, SPHK1, SPHK2, TACR1, TACR2, TACR3, TBXA2R, TNNC1, TNNC2, TRHR, TRPC1, VDAC1, VDAC2, VDAC3 162 ADCY1(17), ADCY2(17), ADCY3(8), ADCY4(8), ADCY7(6), ADCY8(16), ADCY9(25), ADORA2A(5), ADORA2B(2), ADRA1A(11), ADRA1B(7), ADRB1(2), ADRB2(8), ATP2A1(16), ATP2A2(9), ATP2A3(12), ATP2B1(17), ATP2B2(12), ATP2B3(21), ATP2B4(18), AVPR1A(8), AVPR1B(3), BDKRB1(5), BDKRB2(9), BST1(5), CACNA1A(19), CACNA1B(1), CACNA1C(30), CACNA1D(34), CACNA1E(47), CACNA1F(36), CACNA1G(20), CACNA1I(13), CACNA1S(33), CALM2(3), CALM3(1), CALML6(4), CAMK2A(8), CAMK2B(2), CAMK2D(7), CAMK2G(8), CAMK4(5), CCKAR(12), CCKBR(7), CD38(7), CHRM1(6), CHRM2(9), CHRM3(9), CHRM5(13), CHRNA7(6), CYSLTR1(5), CYSLTR2(6), DRD1(6), EDNRA(6), EDNRB(2), EGFR(20), ERBB2(6), ERBB3(16), ERBB4(29), F2R(8), GNA11(3), GNA14(5), GNA15(1), GNAL(6), GNAS(25), GRIN1(5), GRIN2A(25), GRIN2C(6), GRIN2D(8), GRM1(22), GRM5(22), GRPR(4), HRH1(9), HRH2(3), HTR2A(15), HTR2B(2), HTR4(7), HTR5A(9), HTR6(4), HTR7(4), ITPKB(6), ITPR1(31), ITPR2(38), ITPR3(23), LHCGR(16), LTB4R2(3), MYLK(17), MYLK2(7), NOS1(21), NOS3(11), NTSR1(4), OXTR(4), P2RX1(9), P2RX3(9), P2RX4(2), P2RX5(8), P2RX7(3), PDE1A(12), PDE1B(9), PDE1C(14), PDGFRA(29), PDGFRB(12), PHKA1(17), PHKA2(15), PHKB(14), PHKG1(6), PHKG2(3), PLCB1(6), PLCB2(9), PLCB3(9), PLCB4(20), PLCD1(5), PLCD3(7), PLCD4(13), PLCE1(36), PLCG1(12), PLCG2(27), PLCZ1(16), PLN(1), PPID(6), PPP3CA(4), PPP3CB(7), PPP3CC(6), PPP3R1(2), PPP3R2(1), PRKACA(4), PRKACB(2), PRKACG(6), PRKCA(10), PRKCG(10), PRKX(4), PTAFR(6), PTGER3(9), PTGFR(10), PTK2B(16), RYR1(80), RYR2(111), RYR3(87), SLC25A4(3), SLC25A5(4), SLC25A6(6), SLC8A1(20), SLC8A2(6), SLC8A3(14), SPHK1(2), SPHK2(1), TACR1(6), TACR2(4), TACR3(9), TNNC1(2), TNNC2(4), TRHR(5), TRPC1(15), VDAC1(2), VDAC3(4) 91603920 1888 150 1836 659 546 777 260 92 190 23 3.22e-15 1.98e-12 2 CALCIUM_REGULATION_IN_CARDIAC_CELLS ADCY1, ADCY2, ADCY3, ADCY4, ADCY5, ADCY6, ADCY7, ADCY8, ADCY9, ADRA1A, ADRA1B, ADRA1D, ADRB1, ADRB2, ADRB3, ANXA6, ARRB1, ARRB2, ATP1A4, ATP1B1, ATP1B2, ATP1B3, ATP2A2, ATP2A3, ATP2B1, ATP2B2, ATP2B3, CACNA1A, CACNA1B, CACNA1C, CACNA1D, CACNA1E, CACNA1S, CACNB1, CACNB3, CALM1, CALM2, CALM3, CALR, CAMK1, CAMK2A, CAMK2B, CAMK2D, CAMK2G, CAMK4, CASQ1, CASQ2, CHRM1, CHRM2, CHRM3, CHRM4, CHRM5, FXYD2, GJA1, GJA12, GJA4, GJA5, GJB1, GJB2, GJB3, GJB4, GJB5, GJB6, GNA11, GNAI2, GNAI3, GNAO1, GNAQ, GNAZ, GNB1, GNB2, GNB3, GNB4, GNB5, GNG12, GNG13, GNG2, GNG3, GNG4, GNG5, GNG7, GNGT1, GRK4, GRK5, GRK6, ITPR1, ITPR2, ITPR3, KCNB1, KCNJ3, KCNJ5, MGC11266, MYCBP, NME7, PEA15, PKIA, PKIB, PKIG, PLCB3, PLN, PRKACA, PRKACB, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, PRKCA, PRKCB1, PRKCD, PRKCE, PRKCG, PRKCH, PRKCQ, PRKCZ, PRKD1, RGS1, RGS10, RGS11, RGS14, RGS16, RGS17, RGS18, RGS19, RGS2, RGS20, RGS3, RGS4, RGS5, RGS6, RGS7, RGS9, RYR1, RYR2, RYR3, SARA1, SFN, SLC8A1, SLC8A3, USP5, YWHAB, YWHAH, YWHAQ, YWHAQ, MIB1 133 ADCY1(17), ADCY2(17), ADCY3(8), ADCY4(8), ADCY5(11), ADCY6(16), ADCY7(6), ADCY8(16), ADCY9(25), ADRA1A(11), ADRA1B(7), ADRB1(2), ADRB2(8), ANXA6(10), ARRB1(7), ARRB2(3), ATP1A4(24), ATP1B1(3), ATP1B2(7), ATP1B3(4), ATP2A2(9), ATP2A3(12), ATP2B1(17), ATP2B2(12), ATP2B3(21), CACNA1A(19), CACNA1B(1), CACNA1C(30), CACNA1D(34), CACNA1E(47), CACNA1S(33), CACNB1(9), CACNB3(6), CALM2(3), CALM3(1), CALR(4), CAMK1(9), CAMK2A(8), CAMK2B(2), CAMK2D(7), CAMK2G(8), CAMK4(5), CASQ1(7), CASQ2(8), CHRM1(6), CHRM2(9), CHRM3(9), CHRM4(9), CHRM5(13), GJA1(6), GJA4(2), GJB1(1), GJB2(3), GJB3(2), GJB4(5), GJB5(3), GJB6(4), GNA11(3), GNAI2(7), GNAI3(3), GNAO1(5), GNAZ(7), GNB1(3), GNB2(5), GNB3(4), GNB4(3), GNB5(3), GNG12(2), GNG13(2), GNG2(2), GNG3(3), GRK4(14), GRK5(10), GRK6(3), ITPR1(31), ITPR2(38), ITPR3(23), KCNB1(17), KCNJ3(15), KCNJ5(6), MIB1(8), MYCBP(1), NME7(4), PEA15(2), PKIG(2), PLCB3(9), PLN(1), PRKACA(4), PRKACB(2), PRKAR1A(4), PRKAR2A(4), PRKAR2B(5), PRKCA(10), PRKCD(7), PRKCE(11), PRKCG(10), PRKCH(9), PRKCQ(13), PRKCZ(4), PRKD1(8), RGS1(6), RGS10(3), RGS14(5), RGS16(3), RGS17(5), RGS18(2), RGS2(3), RGS20(5), RGS3(15), RGS4(6), RGS5(4), RGS6(7), RGS7(9), RGS9(19), RYR1(80), RYR2(111), RYR3(87), SLC8A1(20), SLC8A3(14), USP5(13), YWHAB(1), YWHAH(4), YWHAQ(3) 65550530 1346 138 1309 463 395 564 151 72 145 19 3.36e-11 1.04e-08 3 HSA04080_NEUROACTIVE_LIGAND_RECEPTOR_INTERACTION Genes involved in neuroactive ligand-receptor interaction ADCYAP1R1, ADORA1, ADORA2A, ADORA2B, ADORA3, ADRA1A, ADRA1B, ADRA2A, ADRA2B, ADRA2C, ADRB1, ADRB2, ADRB3, AGTR1, AGTR2, AGTRL1, AVPR1A, AVPR1B, AVPR2, BDKRB1, BDKRB2, BRS3, C3AR1, C5AR1, CALCR, CALCRL, CCKAR, CCKBR, CGA, CHRM1, CHRM2, CHRM3, CHRM4, CHRM5, CNR1, CNR2, CRHR1, CRHR2, CTSG, CYSLTR1, CYSLTR2, DRD1, DRD2, DRD3, DRD4, DRD5, EDG1, EDG2, EDG3, EDG4, EDG5, EDG6, EDG7, EDG8, EDNRA, EDNRB, F2, F2R, F2RL1, F2RL2, F2RL3, FPR1, FPRL1, FPRL2, FSHB, FSHR, GABBR1, GABBR2, GABRA1, GABRA2, GABRA3, GABRA4, GABRA5, GABRA6, GABRB1, GABRB2, GABRB3, GABRD, GABRE, GABRG1, GABRG2, GABRG3, GABRP, GABRQ, GABRR1, GABRR2, GALR1, GALR2, GALR3, GCGR, GH1, GH2, GHR, GHRHR, GHSR, GIPR, GLP1R, GLP2R, GLRA1, GLRA2, GLRA3, GLRB, GNRHR, GPR156, GPR23, GPR35, GPR50, GPR63, GPR83, GRIA1, GRIA2, GRIA3, GRIA4, GRID1, GRID2, GRIK1, GRIK2, GRIK3, GRIK4, GRIK5, GRIN1, GRIN2A, GRIN2B, GRIN2C, GRIN2D, GRIN3A, GRIN3B, GRM1, GRM2, GRM3, GRM4, GRM5, GRM6, GRM7, GRM8, GRPR, GZMA, HCRTR1, HCRTR2, HRH1, HRH2, HRH3, HRH4, HTR1A, HTR1B, HTR1D, HTR1E, HTR1F, HTR2A, HTR2B, HTR2C, HTR4, HTR5A, HTR6, HTR7, KISS1R, LEP, LEPR, LHB, LHCGR, LTB4R, LTB4R2, MAS1, MC1R, MC2R, MC3R, MC4R, MC5R, MCHR1, MCHR2, MLNR, MTNR1A, MTNR1B, NMBR, NMUR1, NMUR2, NPBWR1, NPBWR2, NPFFR1, NPFFR2, NPY1R, NPY2R, NPY5R, NR3C1, NTSR1, NTSR2, OPRD1, OPRK1, OPRL1, OPRM1, OXTR, P2RX1, P2RX2, P2RX3, P2RX4, P2RX5, P2RX7, P2RXL1, P2RY1, P2RY10, P2RY11, P2RY13, P2RY14, P2RY2, P2RY4, P2RY5, P2RY6, P2RY8, PARD3, PPYR1, PRL, PRLHR, PRLR, PRSS1, PRSS2, PRSS3, PTAFR, PTGDR, PTGER1, PTGER2, PTGER3, PTGER4, PTGFR, PTGIR, PTH2R, PTHR1, RXFP1, RXFP2, SCTR, SSTR1, SSTR2, SSTR3, SSTR4, SSTR5, TAAR1, TAAR2, TAAR5, TAAR6, TAAR8, TAAR9, TACR1, TACR2, TACR3, TBXA2R, THRA, THRB, TRHR, TRPV1, TSHB, TSHR, TSPO, UTS2R, VIPR1, VIPR2 214 ADCYAP1R1(7), ADORA1(6), ADORA2A(5), ADORA2B(2), ADORA3(5), ADRA1A(11), ADRA1B(7), ADRA2B(5), ADRB1(2), ADRB2(8), AGTR2(8), AVPR1A(8), AVPR1B(3), AVPR2(5), BDKRB1(5), BDKRB2(9), BRS3(13), C3AR1(7), C5AR1(5), CALCR(5), CALCRL(9), CCKAR(12), CCKBR(7), CGA(1), CHRM1(6), CHRM2(9), CHRM3(9), CHRM4(9), CHRM5(13), CNR1(8), CNR2(3), CRHR1(2), CRHR2(2), CTSG(3), CYSLTR1(5), CYSLTR2(6), DRD1(6), DRD2(10), DRD3(5), DRD5(11), EDNRA(6), EDNRB(2), F2(9), F2R(8), F2RL1(3), F2RL2(3), FPR1(4), FSHR(17), GABBR1(17), GABBR2(14), GABRA1(10), GABRA2(12), GABRA3(15), GABRA4(17), GABRA5(8), GABRA6(8), GABRB1(8), GABRB2(16), GABRB3(15), GABRE(7), GABRG1(8), GABRG2(19), GABRG3(14), GABRP(5), GABRQ(7), GABRR1(5), GABRR2(2), GALR1(2), GALR3(3), GH1(6), GH2(5), GHR(10), GHRHR(2), GHSR(7), GIPR(4), GLP1R(8), GLP2R(17), GLRA1(9), GLRA2(6), GLRA3(11), GLRB(8), GNRHR(4), GPR156(6), GPR50(8), GPR63(5), GPR83(5), GRIA1(12), GRIA2(25), GRIA4(23), GRID1(16), GRID2(13), GRIK1(16), GRIK2(15), GRIK3(17), GRIK4(8), GRIK5(19), GRIN1(5), GRIN2A(25), GRIN2B(23), GRIN2C(6), GRIN2D(8), GRIN3A(15), GRM1(22), GRM2(7), GRM3(20), GRM4(16), GRM5(22), GRM7(15), GRM8(24), GRPR(4), GZMA(6), HCRTR1(1), HCRTR2(8), HRH1(9), HRH2(3), HRH4(4), HTR1A(13), HTR1B(6), HTR1D(6), HTR1E(6), HTR2A(15), HTR2B(2), HTR4(7), HTR5A(9), HTR6(4), HTR7(4), LEP(2), LEPR(15), LHB(3), LHCGR(16), LTB4R(3), LTB4R2(3), MAS1(2), MC2R(2), MC3R(8), MC4R(7), MC5R(12), MCHR1(7), MCHR2(1), MLNR(3), MTNR1A(6), MTNR1B(4), NMBR(4), NMUR1(8), NMUR2(7), NPBWR1(2), NPFFR1(2), NPFFR2(12), NPY1R(6), NPY2R(4), NPY5R(10), NR3C1(13), NTSR1(4), NTSR2(2), OPRD1(2), OPRK1(9), OPRM1(11), OXTR(4), P2RX1(9), P2RX3(9), P2RX4(2), P2RX5(8), P2RX7(3), P2RY1(2), P2RY10(6), P2RY11(7), P2RY13(3), P2RY14(5), P2RY2(6), P2RY4(7), P2RY6(3), PARD3(27), PPYR1(7), PRL(6), PRLHR(2), PRLR(6), PRSS1(7), PRSS3(2), PTAFR(6), PTGDR(6), PTGER2(5), PTGER3(9), PTGER4(8), PTGFR(10), PTGIR(3), PTH2R(7), RXFP1(16), RXFP2(17), SCTR(4), SSTR2(3), SSTR3(6), TAAR1(6), TAAR2(5), TAAR5(8), TAAR6(5), TAAR8(3), TAAR9(8), TACR1(6), TACR2(4), TACR3(9), THRA(5), THRB(4), TRHR(5), TRPV1(6), TSHB(3), TSHR(12), VIPR1(3) 71058285 1639 145 1582 539 480 673 258 73 153 2 4.29e-10 8.81e-08 4 HSA04010_MAPK_SIGNALING_PATHWAY Genes involved in MAPK signaling pathway ACVR1B, ACVR1C, AKT1, AKT2, AKT3, ARRB1, ARRB2, ATF2, ATF4, BDNF, BRAF, CACNA1A, CACNA1B, CACNA1C, CACNA1D, CACNA1E, CACNA1F, CACNA1G, CACNA1H, CACNA1I, CACNA1S, CACNA2D1, CACNA2D2, CACNA2D3, CACNA2D4, CACNB1, CACNB2, CACNB3, CACNB4, CACNG1, CACNG2, CACNG3, CACNG4, CACNG5, CACNG6, CACNG7, CACNG8, CASP3, CD14, CDC25B, CDC42, CHP, CHUK, CRK, CRKL, DAXX, DDIT3, DUSP1, DUSP10, DUSP14, DUSP16, DUSP2, DUSP3, DUSP4, DUSP5, DUSP6, DUSP7, DUSP8, DUSP9, ECSIT, EGF, EGFR, ELK1, ELK4, EVI1, FAS, FASLG, FGF1, FGF10, FGF11, FGF12, FGF13, FGF14, FGF16, FGF17, FGF18, FGF19, FGF2, FGF20, FGF21, FGF22, FGF23, FGF3, FGF4, FGF5, FGF6, FGF7, FGF8, FGF9, FGFR1, FGFR2, FGFR3, FGFR4, FLNA, FLNB, FLNC, FOS, GADD45A, GADD45B, GADD45G, GNA12, GNG12, GRB2, HRAS, IKBKB, IKBKG, IL1A, IL1B, IL1R1, IL1R2, JUN, JUND, KRAS, LOC653852, MAP2K1, MAP2K1IP1, MAP2K2, MAP2K3, MAP2K4, MAP2K5, MAP2K6, MAP2K7, MAP3K1, MAP3K10, MAP3K12, MAP3K13, MAP3K14, MAP3K2, MAP3K3, MAP3K4, MAP3K5, MAP3K6, MAP3K7, MAP3K7IP1, MAP3K7IP2, MAP3K8, MAP4K1, MAP4K2, MAP4K3, MAP4K4, MAPK1, MAPK10, MAPK11, MAPK12, MAPK13, MAPK14, MAPK3, MAPK7, MAPK8, MAPK8IP1, MAPK8IP2, MAPK8IP3, MAPK9, MAPKAPK2, MAPKAPK3, MAPKAPK5, MAPT, MAX, MEF2C, MKNK1, MKNK2, MOS, MRAS, MYC, NF1, NFATC2, NFATC4, NFKB1, NFKB2, NGFB, NLK, NR4A1, NRAS, NTF3, NTF5, NTRK1, NTRK2, PAK1, PAK2, PDGFA, PDGFB, PDGFRA, PDGFRB, PLA2G10, PLA2G12A, PLA2G12B, PLA2G1B, PLA2G2A, PLA2G2D, PLA2G2E, PLA2G2F, PLA2G3, PLA2G4A, PLA2G5, PLA2G6, PPM1A, PPM1B, PPP3CA, PPP3CB, PPP3CC, PPP3R1, PPP3R2, PPP5C, PRKACA, PRKACB, PRKACG, PRKCA, PRKCB1, PRKCG, PRKX, PRKY, PTPN5, PTPN7, PTPRR, RAC1, RAC2, RAC3, RAF1, RAP1A, RAP1B, RAPGEF2, RASA1, RASA2, RASGRF1, RASGRF2, RASGRP1, RASGRP2, RASGRP3, RASGRP4, RPS6KA1, RPS6KA2, RPS6KA3, RPS6KA4, RPS6KA5, RPS6KA6, RRAS, RRAS2, SOS1, SOS2, SRF, STK3, STK4, STMN1, TAOK1, TAOK2, TAOK3, TGFB1, TGFB2, TGFB3, TGFBR1, TGFBR2, TNF, TNFRSF1A, TP53, TRAF2, TRAF6, ZAK 225 ACVR1B(6), ACVR1C(7), AKT1(8), AKT2(4), AKT3(8), ARRB1(7), ARRB2(3), ATF2(6), ATF4(4), BDNF(8), BRAF(12), CACNA1A(19), CACNA1B(1), CACNA1C(30), CACNA1D(34), CACNA1E(47), CACNA1F(36), CACNA1G(20), CACNA1I(13), CACNA1S(33), CACNA2D1(14), CACNA2D2(9), CACNA2D3(20), CACNA2D4(18), CACNB1(9), CACNB2(11), CACNB3(6), CACNB4(14), CACNG2(3), CACNG3(9), CACNG4(6), CACNG5(4), CACNG6(6), CACNG7(10), CASP3(4), CD14(2), CDC25B(3), CDC42(5), CHUK(11), CRK(1), CRKL(5), DAXX(11), DDIT3(1), DUSP1(2), DUSP10(7), DUSP14(3), DUSP16(13), DUSP2(4), DUSP3(2), DUSP4(1), DUSP5(5), DUSP6(1), DUSP7(4), DUSP9(8), ECSIT(5), EGF(24), EGFR(20), ELK1(2), ELK4(3), FAS(7), FASLG(6), FGF1(1), FGF10(1), FGF11(2), FGF12(4), FGF13(6), FGF14(3), FGF16(1), FGF17(1), FGF18(2), FGF21(3), FGF23(6), FGF5(8), FGF6(2), FGF7(6), FGF8(2), FGF9(2), FGFR1(10), FGFR4(11), FLNA(31), FLNB(38), FLNC(34), FOS(6), GNA12(10), GNG12(2), GRB2(3), IKBKB(15), IL1A(1), IL1B(2), IL1R1(5), IL1R2(7), JUN(1), MAP2K1(2), MAP2K3(8), MAP2K4(6), MAP2K5(2), MAP2K6(9), MAP3K10(7), MAP3K12(8), MAP3K13(13), MAP3K14(12), MAP3K2(8), MAP3K3(9), MAP3K4(23), MAP3K5(21), MAP3K6(7), MAP3K7(8), MAP3K8(12), MAP4K1(13), MAP4K2(6), MAP4K3(21), MAP4K4(14), MAPK1(2), MAPK10(9), MAPK13(2), MAPK14(6), MAPK3(4), MAPK7(17), MAPK8(7), MAPK8IP1(5), MAPK9(7), MAPKAPK2(6), MAPKAPK3(4), MAPKAPK5(6), MAPT(11), MAX(8), MEF2C(11), MKNK1(6), MKNK2(4), MOS(8), MRAS(3), MYC(7), NF1(40), NFATC2(15), NFATC4(8), NFKB1(12), NFKB2(10), NLK(5), NR4A1(4), NTF3(6), NTRK1(11), NTRK2(15), PAK1(3), PAK2(6), PDGFB(4), PDGFRA(29), PDGFRB(12), PLA2G10(1), PLA2G12A(1), PLA2G12B(3), PLA2G1B(1), PLA2G2D(2), PLA2G2E(3), PLA2G2F(3), PLA2G3(5), PLA2G4A(11), PLA2G5(2), PLA2G6(6), PPM1A(7), PPM1B(6), PPP3CA(4), PPP3CB(7), PPP3CC(6), PPP3R1(2), PPP3R2(1), PPP5C(7), PRKACA(4), PRKACB(2), PRKACG(6), PRKCA(10), PRKCG(10), PRKX(4), PTPN5(5), PTPN7(5), PTPRR(18), RAC2(2), RAF1(7), RAP1A(3), RAP1B(2), RAPGEF2(38), RASA2(8), RASGRF1(13), RASGRF2(17), RASGRP1(8), RASGRP2(5), RASGRP3(8), RASGRP4(7), RPS6KA1(5), RPS6KA2(16), RPS6KA3(17), RPS6KA4(5), RPS6KA5(7), RPS6KA6(15), RRAS(1), RRAS2(5), SOS1(21), SOS2(22), SRF(3), STK3(9), STK4(6), STMN1(6), TAOK1(10), TAOK2(10), TAOK3(4), TGFB1(4), TGFB2(6), TGFB3(9), TGFBR1(8), TGFBR2(6), TNF(1), TNFRSF1A(6), TRAF2(5), TRAF6(4), ZAK(12) 92476270 1836 141 1785 566 501 733 230 111 239 22 1.14e-08 1.75e-06 5 HSA04530_TIGHT_JUNCTION Genes involved in tight junction ACTB, ACTG1, ACTN1, ACTN2, ACTN3, ACTN4, AKT1, AKT2, AKT3, AMOTL1, ASH1L, CASK, CDC42, CDK4, CGN, CLDN1, CLDN10, CLDN11, CLDN14, CLDN15, CLDN16, CLDN17, CLDN18, CLDN19, CLDN2, CLDN20, CLDN22, CLDN23, CLDN3, CLDN4, CLDN5, CLDN6, CLDN7, CLDN8, CLDN9, CRB3, CSDA, CSNK2A1, CSNK2A2, CSNK2B, CTNNA1, CTNNA2, CTNNA3, CTNNB1, CTTN, EPB41, EPB41L1, EPB41L2, EPB41L3, EXOC3, EXOC4, F11R, GNAI1, GNAI2, GNAI3, HCLS1, HRAS, IGSF5, INADL, JAM2, JAM3, KRAS, LLGL1, LLGL2, MAGI1, MAGI2, MAGI3, MLLT4, MPDZ, MPP5, MRAS, MRCL3, MRLC2, MYH1, MYH10, MYH11, MYH13, MYH14, MYH15, MYH2, MYH3, MYH4, MYH6, MYH7, MYH7B, MYH8, MYH9, MYL2, MYL5, MYL7, MYL8P, MYL9, MYLC2PL, MYLPF, NRAS, OCLN, PARD3, PARD6A, PARD6B, PARD6G, PPM1J, PPP2CA, PPP2CB, PPP2R1A, PPP2R1B, PPP2R2A, PPP2R2B, PPP2R2C, PPP2R3A, PPP2R3B, PPP2R4, PRKCA, PRKCB1, PRKCD, PRKCE, PRKCG, PRKCH, PRKCI, PRKCQ, PRKCZ, PTEN, RAB13, RAB3B, RHOA, RRAS, RRAS2, SPTAN1, SRC, SYMPK, TJAP1, TJP1, TJP2, TJP3, VAPA, YES1, ZAK 121 ACTB(5), ACTN1(13), ACTN2(9), ACTN3(10), ACTN4(11), AKT1(8), AKT2(4), AKT3(8), AMOTL1(14), ASH1L(40), CASK(20), CDC42(5), CDK4(4), CGN(15), CLDN1(2), CLDN10(9), CLDN11(1), CLDN15(4), CLDN16(6), CLDN17(2), CLDN18(4), CLDN19(2), CLDN2(4), CLDN20(4), CLDN22(3), CLDN6(1), CLDN7(1), CLDN8(5), CLDN9(2), CRB3(1), CSDA(6), CSNK2A1(9), CSNK2A2(5), CTNNA1(18), CTNNA2(13), CTNNA3(13), CTTN(8), EPB41(11), EPB41L1(11), EPB41L2(13), EPB41L3(18), EXOC3(12), EXOC4(4), F11R(2), GNAI1(4), GNAI2(7), GNAI3(3), HCLS1(8), IGSF5(9), INADL(17), JAM2(9), JAM3(3), LLGL1(14), LLGL2(5), MAGI1(32), MAGI2(26), MAGI3(17), MLLT4(32), MPDZ(22), MPP5(5), MRAS(3), MYH1(44), MYH10(29), MYH11(39), MYH13(27), MYH14(22), MYH15(22), MYH2(37), MYH3(30), MYH4(36), MYH6(23), MYH7(28), MYH7B(15), MYH8(35), MYH9(26), MYL2(1), MYL5(3), MYL7(4), MYL9(3), MYLPF(2), OCLN(5), PARD3(27), PARD6A(1), PARD6B(3), PPM1J(3), PPP2CA(6), PPP2CB(2), PPP2R1B(9), PPP2R2A(15), PPP2R2B(12), PPP2R2C(3), PPP2R3A(13), PPP2R4(7), PRKCA(10), PRKCD(7), PRKCE(11), PRKCG(10), PRKCH(9), PRKCI(8), PRKCQ(13), PRKCZ(4), RAB13(3), RAB3B(1), RHOA(4), RRAS(1), RRAS2(5), SPTAN1(29), SRC(2), SYMPK(20), TJAP1(8), TJP1(33), TJP2(16), TJP3(6), VAPA(5), YES1(5), ZAK(12) 64754182 1330 139 1292 409 366 531 194 61 161 17 3.56e-08 4.38e-06 6 HSA04910_INSULIN_SIGNALING_PATHWAY Genes involved in insulin signaling pathway ACACA, ACACB, AKT1, AKT2, AKT3, ARAF, BAD, BRAF, CALM1, CALM2, CALM3, CALML3, CALML6, CBL, CBLB, CBLC, CRK, CRKL, EIF4EBP1, ELK1, EXOC7, FASN, FBP1, FBP2, FLOT1, FLOT2, FOXO1, FRAP1, G6PC, G6PC2, GCK, GRB2, GSK3B, GYS1, GYS2, HRAS, IKBKB, INPP5D, INS, INSR, IRS1, IRS2, IRS4, KIAA1303, KRAS, LIPE, MAP2K1, MAP2K2, MAPK1, MAPK10, MAPK3, MAPK8, MAPK9, MKNK1, MKNK2, NRAS, PCK1, PCK2, PDE3A, PDE3B, PDPK1, PFKL, PFKM, PFKP, PHKA1, PHKA2, PHKB, PHKG1, PHKG2, PIK3CA, PIK3CB, PIK3CD, PIK3CG, PIK3R1, PIK3R2, PIK3R3, PIK3R5, PKLR, PKM2, PPARGC1A, PPP1CA, PPP1CB, PPP1CC, PPP1R3A, PPP1R3B, PPP1R3C, PPP1R3D, PRKAA1, PRKAA2, PRKAB1, PRKAB2, PRKACA, PRKACB, PRKACG, PRKAG1, PRKAG2, PRKAG3, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, PRKCI, PRKCZ, PRKX, PRKY, PTPN1, PTPRF, PYGB, PYGL, PYGM, RAF1, RAPGEF1, RHEB, RHOQ, RPS6, RPS6KB1, RPS6KB2, SH2B2, SHC1, SHC2, SHC3, SHC4, SKIP, SLC2A4, SOCS1, SOCS2, SOCS3, SOCS4, SORBS1, SOS1, SOS2, SREBF1, TRIP10, TSC1, TSC2 118 ACACA(27), ACACB(31), AKT1(8), AKT2(4), AKT3(8), ARAF(8), BAD(2), BRAF(12), CALM2(3), CALM3(1), CALML6(4), CBL(10), CBLB(15), CBLC(5), CRK(1), CRKL(5), ELK1(2), EXOC7(8), FBP1(4), FLOT1(1), FLOT2(3), FOXO1(11), G6PC(6), G6PC2(9), GCK(5), GRB2(3), GSK3B(11), GYS1(12), GYS2(19), IKBKB(15), INPP5D(14), INSR(18), IRS1(17), IRS4(20), LIPE(7), MAP2K1(2), MAPK1(2), MAPK10(9), MAPK3(4), MAPK8(7), MAPK9(7), MKNK1(6), MKNK2(4), PCK1(15), PCK2(7), PDE3A(17), PDE3B(15), PDPK1(3), PFKM(7), PFKP(11), PHKA1(17), PHKA2(15), PHKB(14), PHKG1(6), PHKG2(3), PIK3CB(19), PIK3CD(10), PIK3CG(25), PIK3R2(4), PIK3R3(8), PIK3R5(8), PKLR(10), PKM2(5), PPARGC1A(13), PPP1CA(6), PPP1CB(7), PPP1CC(2), PPP1R3A(23), PPP1R3B(3), PPP1R3C(3), PRKAA1(6), PRKAA2(9), PRKAB1(7), PRKAB2(2), PRKACA(4), PRKACB(2), PRKACG(6), PRKAG1(2), PRKAG2(4), PRKAG3(6), PRKAR1A(4), PRKAR2A(4), PRKAR2B(5), PRKCI(8), PRKCZ(4), PRKX(4), PTPN1(4), PTPRF(34), PYGB(10), PYGL(9), PYGM(10), RAF1(7), RAPGEF1(18), RHEB(2), RHOQ(1), RPS6(6), RPS6KB1(3), RPS6KB2(6), SH2B2(2), SHC1(11), SHC3(9), SHC4(7), SLC2A4(4), SOCS2(7), SOCS4(4), SORBS1(22), SOS1(21), SOS2(22), SREBF1(6), TRIP10(6), TSC1(13), TSC2(14) 49120714 981 128 952 281 250 412 126 43 138 12 4.85e-06 0.00050 7 ERK5PATHWAY Signaling between a tissue and its innervating axon stimulates retrograde transport via Trk receptors, which activate Erk5, which induces transcription of anti-apoptotic factors. AKT1, CREB1, GRB2, HRAS, MAPK1, MAPK3, MAPK7, MEF2A, MEF2B, MEF2C, MEF2D, NTRK1, PIK3CA, PIK3R1, PLCG1, RPS6KA1, SHC1 15 AKT1(8), CREB1(5), GRB2(3), MAPK1(2), MAPK3(4), MAPK7(17), MEF2A(5), MEF2B(3), MEF2C(11), MEF2D(7), NTRK1(11), PLCG1(12), RPS6KA1(5), SHC1(11) 5187495 104 52 96 30 23 51 9 5 16 0 6.65e-06 0.00058 8 WNTPATHWAY The Wnt glycoprotein binds to membrane-bound receptors such as Frizzled to activate a number of signaling pathways, including that of beta-catenin. APC, AXIN1, BTRC, CCND1, CREBBP, CSNK1A1, CSNK1D, CSNK2A1, CTBP1, CTNNB1, DVL1, FRAT1, FZD1, GSK3B, HDAC1, MADH4, MAP3K7, MAP3K7IP1, MYC, NLK, PPARD, PPP2CA, TCF1, TLE1, WIF1, WNT1 17 AXIN1(8), BTRC(13), CREBBP(37), CSNK1A1(5), CSNK2A1(9), FZD1(2), GSK3B(11), HDAC1(4), MAP3K7(8), MYC(7), NLK(5), PPARD(6), PPP2CA(6), TLE1(12), WIF1(5), WNT1(1) 6567242 139 59 136 28 43 56 17 3 18 2 0.000018 0.0014 9 PITX2PATHWAY The bicoid-related transcription factor Pitx2 is activated by Wnt binding to the Frizzled receptor and induces tissue-specific cell proliferation. APC, AXIN1, CREBBP, CTNNB1, DVL1, EP300, FZD1, GSK3B, HDAC1, HTATIP, LDB1, LEF1, PITX2, PPARBP, TRRAP, WNT1 10 AXIN1(8), CREBBP(37), EP300(29), FZD1(2), GSK3B(11), HDAC1(4), LDB1(3), LEF1(9), TRRAP(72), WNT1(1) 8072942 176 62 170 33 49 68 23 6 28 2 0.000028 0.0019 10 TGFBPATHWAY The TGF-beta receptor responds to ligand binding by activating the SMAD family of transcriptional regulations, commonly blocking cell growth. APC, CDH1, CREBBP, EP300, MADH2, MADH3, MADH4, MADH7, MADHIP, MAP2K1, MAP3K7, MAP3K7IP1, MAPK3, SKIL, TGFB1, TGFB2, TGFB3, TGFBR1, TGFBR2 12 CDH1(15), CREBBP(37), EP300(29), MAP2K1(2), MAP3K7(8), MAPK3(4), SKIL(13), TGFB1(4), TGFB2(6), TGFB3(9), TGFBR1(8), TGFBR2(6) 6902081 141 57 136 37 35 58 20 6 22 0 0.000054 0.0032 11 TRKAPATHWAY Nerve growth factor (NGF) promotes neuronal survival and proliferation by binding its receptor TrkA, which activates PI3K/AKT, Ras, and the MAP kinase pathway. AKT1, DPM2, GRB2, HRAS, KLK2, NGFB, NTRK1, PIK3CA, PIK3R1, PLCG1, PRKCA, PRKCB1, SHC1, SOS1 10 AKT1(8), DPM2(4), GRB2(3), KLK2(2), NTRK1(11), PLCG1(12), PRKCA(10), SHC1(11), SOS1(21) 4122511 82 45 75 25 22 37 8 5 8 2 0.000057 0.0032 12 SA_PTEN_PATHWAY PTEN is a tumor suppressor that dephosphorylates the lipid messenger phosphatidylinositol triphosphate. AKT1, AKT2, AKT3, BPNT1, GRB2, ILK, MAPK1, MAPK3, PDK1, PIK3CA, PIK3CD, PIP3-E, PTEN, PTK2B, RBL2, SHC1, SOS1 14 AKT1(8), AKT2(4), AKT3(8), BPNT1(1), GRB2(3), ILK(8), MAPK1(2), MAPK3(4), PDK1(7), PIK3CD(10), PTK2B(16), RBL2(21), SHC1(11), SOS1(21) 5893501 124 53 111 29 32 50 14 7 16 5 0.000077 0.0040 13 IGF1RPATHWAY Insulin-like growth factor receptor IGF-1R promotes cell growth and inhibits apoptosis on binding of ligands IGF-1 and 2 via Ras activation and the AKT pathway. AKT1, BAD, GRB2, HRAS, IGF1R, IRS1, MAP2K1, MAPK1, MAPK3, PIK3CA, PIK3R1, RAF1, SHC1, SOS1, YWHAH 13 AKT1(8), BAD(2), GRB2(3), IGF1R(13), IRS1(17), MAP2K1(2), MAPK1(2), MAPK3(4), RAF1(7), SHC1(11), SOS1(21), YWHAH(4) 5263975 94 47 89 25 20 43 13 6 10 2 0.00025 0.011 14 HSA04510_FOCAL_ADHESION Genes involved in focal adhesion ACTB, ACTG1, ACTN1, ACTN2, ACTN3, ACTN4, AKT1, AKT2, AKT3, ARHGAP5, BAD, BCAR1, BCL2, BIRC2, BIRC3, BIRC4, BRAF, CAPN2, CAV1, CAV2, CAV3, CCND1, CCND2, CCND3, CDC42, CHAD, COL11A1, COL11A2, COL1A1, COL1A2, COL2A1, COL3A1, COL4A1, COL4A2, COL4A4, COL4A6, COL5A1, COL5A2, COL5A3, COL6A1, COL6A2, COL6A3, COL6A6, COMP, CRK, CRKL, CTNNB1, DIAPH1, DOCK1, EGF, EGFR, ELK1, ERBB2, FARP2, FIGF, FLNA, FLNB, FLNC, FLT1, FN1, FYN, GRB2, GRLF1, GSK3B, HGF, HRAS, IBSP, IGF1, IGF1R, ILK, ITGA1, ITGA10, ITGA11, ITGA2, ITGA2B, ITGA3, ITGA4, ITGA5, ITGA6, ITGA7, ITGA8, ITGA9, ITGAV, ITGB1, ITGB3, ITGB4, ITGB5, ITGB6, ITGB7, ITGB8, JUN, KDR, LAMA1, LAMA2, LAMA3, LAMA4, LAMA5, LAMB1, LAMB2, LAMB3, LAMB4, LAMC1, LAMC2, LAMC3, LOC653852, MAP2K1, MAPK1, MAPK10, MAPK3, MAPK8, MAPK9, MET, MLCK, MRCL3, MRLC2, MYL2, MYL5, MYL7, MYL8P, MYL9, MYLC2PL, MYLK, MYLK2, MYLPF, PAK1, PAK2, PAK3, PAK4, PAK6, PAK7, PARVA, PARVB, PARVG, PDGFA, PDGFB, PDGFC, PDGFD, PDGFRA, PDGFRB, PDPK1, PGF, PIK3CA, PIK3CB, PIK3CD, PIK3CG, PIK3R1, PIK3R2, PIK3R3, PIK3R5, PIP5K1C, PPP1CA, PPP1CB, PPP1CC, PPP1R12A, PRKCA, PRKCB1, PRKCG, PTEN, PTK2, PXN, RAC1, RAC2, RAC3, RAF1, RAP1A, RAP1B, RAPGEF1, RELN, RHOA, ROCK1, ROCK2, SHC1, SHC2, SHC3, SHC4, SOS1, SOS2, SPP1, SRC, THBS1, THBS2, THBS3, THBS4, TLN1, TLN2, TNC, TNN, TNR, TNXB, VASP, VAV1, VAV2, VAV3, VCL, VEGFA, VEGFB, VEGFC, VTN, VWF, ZYX 179 ACTB(5), ACTN1(13), ACTN2(9), ACTN3(10), ACTN4(11), AKT1(8), AKT2(4), AKT3(8), ARHGAP5(24), BAD(2), BIRC2(13), BIRC3(3), BRAF(12), CAPN2(6), CAV2(1), CCND2(7), CCND3(5), CDC42(5), CHAD(3), COL11A1(36), COL11A2(13), COL1A1(12), COL1A2(22), COL2A1(14), COL3A1(18), COL4A1(23), COL4A2(11), COL4A4(24), COL4A6(35), COL5A2(24), COL5A3(23), COL6A3(54), COL6A6(38), COMP(7), CRK(1), CRKL(5), DIAPH1(11), DOCK1(32), EGF(24), EGFR(20), ELK1(2), ERBB2(6), FARP2(18), FIGF(5), FLNA(31), FLNB(38), FLNC(34), FLT1(23), FN1(39), FYN(7), GRB2(3), GSK3B(11), HGF(15), IBSP(6), IGF1(3), IGF1R(13), ILK(8), ITGA1(20), ITGA10(11), ITGA11(12), ITGA2(21), ITGA2B(11), ITGA3(6), ITGA4(12), ITGA5(12), ITGA6(12), ITGA7(10), ITGA8(16), ITGA9(15), ITGAV(10), ITGB1(12), ITGB3(16), ITGB4(12), ITGB5(8), ITGB6(6), ITGB7(8), ITGB8(5), JUN(1), KDR(23), LAMA1(39), LAMA2(62), LAMA3(35), LAMA4(22), LAMB1(22), LAMB2(27), LAMB3(16), LAMB4(27), LAMC1(17), LAMC2(12), LAMC3(13), MAP2K1(2), MAPK1(2), MAPK10(9), MAPK3(4), MAPK8(7), MAPK9(7), MET(10), MYL2(1), MYL5(3), MYL7(4), MYL9(3), MYLK(17), MYLK2(7), MYLPF(2), PAK1(3), PAK2(6), PAK3(14), PAK4(2), PAK6(3), PAK7(12), PARVA(2), PARVB(2), PARVG(3), PDGFB(4), PDGFC(4), PDGFD(6), PDGFRA(29), PDGFRB(12), PDPK1(3), PGF(2), PIK3CB(19), PIK3CD(10), PIK3CG(25), PIK3R2(4), PIK3R3(8), PIK3R5(8), PIP5K1C(5), PPP1CA(6), PPP1CB(7), PPP1CC(2), PPP1R12A(12), PRKCA(10), PRKCG(10), PTK2(11), PXN(6), RAC2(2), RAF1(7), RAP1A(3), RAP1B(2), RAPGEF1(18), RELN(48), RHOA(4), ROCK1(27), ROCK2(15), SHC1(11), SHC3(9), SHC4(7), SOS1(21), SOS2(22), SPP1(3), SRC(2), THBS1(12), THBS2(22), THBS3(6), THBS4(9), TLN1(28), TLN2(29), TNC(19), TNN(16), TNR(16), TNXB(25), VASP(2), VAV1(16), VAV2(5), VAV3(13), VCL(14), VEGFA(1), VEGFB(2), VEGFC(7), VWF(31), ZYX(12) 120892653 2223 142 2168 695 571 918 292 104 293 45 0.00025 0.011 15 SIG_IL4RECEPTOR_IN_B_LYPHOCYTES Genes related to IL4 rceptor signaling in B lymphocytes AKT1, AKT2, AKT3, BAD, BCL2, GRB2, GSK3A, GSK3B, IL4R, IRS1, IRS2, JAK1, JAK3, MAP4K1, MAPK1, MAPK3, PDK1, PIK3CA, PIK3CD, PIK3R1, PPP1R13B, RAF1, SHC1, SOCS1, SOS1, SOS2, STAT6 22 AKT1(8), AKT2(4), AKT3(8), BAD(2), GRB2(3), GSK3A(9), GSK3B(11), IL4R(6), IRS1(17), JAK3(9), MAP4K1(13), MAPK1(2), MAPK3(4), PDK1(7), PIK3CD(10), PPP1R13B(7), RAF1(7), SHC1(11), SOS1(21), SOS2(22), STAT6(10) 10020314 191 67 182 42 43 84 28 8 24 4 0.00027 0.011 16 HSA04810_REGULATION_OF_ACTIN_CYTOSKELETON Genes involved in regulation of actin cytoskeleton ABI2, ACTN1, ACTN2, ACTN3, ACTN4, APC, APC2, ARAF, ARHGEF1, ARHGEF12, ARHGEF4, ARHGEF6, ARHGEF7, ARPC1A, ARPC1B, ARPC2, ARPC3, ARPC4, ARPC5, ARPC5L, BAIAP2, BCAR1, BDKRB1, BDKRB2, BRAF, C3orf10, CD14, CDC42, CFL1, CFL2, CHRM1, CHRM2, CHRM3, CHRM4, CHRM5, CRK, CRKL, CSK, CYFIP1, CYFIP2, DIAPH1, DIAPH2, DIAPH3, DOCK1, EGF, EGFR, EZR, F2, F2R, FGD1, FGD3, FGF1, FGF10, FGF11, FGF12, FGF13, FGF14, FGF16, FGF17, FGF18, FGF19, FGF2, FGF20, FGF21, FGF22, FGF23, FGF3, FGF4, FGF5, FGF6, FGF7, FGF8, FGF9, FGFR1, FGFR2, FGFR3, FGFR4, FN1, GIT1, GNA12, GNA13, GNG12, GRLF1, GSN, HRAS, INS, IQGAP1, IQGAP2, IQGAP3, ITGA1, ITGA10, ITGA11, ITGA2, ITGA2B, ITGA3, ITGA4, ITGA5, ITGA6, ITGA7, ITGA8, ITGA9, ITGAD, ITGAE, ITGAL, ITGAM, ITGAV, ITGAX, ITGB1, ITGB2, ITGB3, ITGB4, ITGB5, ITGB6, ITGB7, ITGB8, KRAS, LIMK1, LIMK2, LOC200025, LOC645126, LOC653888, MAP2K1, MAP2K2, MAPK1, MAPK3, MLCK, MOS, MRAS, MRCL3, MRLC2, MSN, MYH10, MYH14, MYH9, MYL2, MYL5, MYL7, MYL8P, MYL9, MYLC2PL, MYLK, MYLK2, MYLPF, NCKAP1, NCKAP1L, NRAS, PAK1, PAK2, PAK3, PAK4, PAK6, PAK7, PDGFA, PDGFB, PDGFRA, PDGFRB, PFN1, PFN2, PFN3, PFN4, PIK3CA, PIK3CB, PIK3CD, PIK3CG, PIK3R1, PIK3R2, PIK3R3, PIK3R5, PIP4K2A, PIP4K2B, PIP4K2C, PIP5K1A, PIP5K1B, PIP5K1C, PIP5K3, PPP1CA, PPP1CB, PPP1CC, PPP1R12A, PPP1R12B, PTK2, PXN, RAC1, RAC2, RAC3, RAF1, RDX, RHOA, ROCK1, ROCK2, RRAS, RRAS2, SCIN, SLC9A1, SOS1, SOS2, SSH1, SSH2, SSH3, TIAM1, TIAM2, TMSB4X, TMSB4Y, TMSL3, VAV1, VAV2, VAV3, VCL, WAS, WASF1, WASF2, WASL 185 ABI2(4), ACTN1(13), ACTN2(9), ACTN3(10), ACTN4(11), ARAF(8), ARHGEF1(11), ARHGEF12(25), ARHGEF4(5), ARHGEF6(19), ARHGEF7(13), ARPC1A(7), ARPC1B(3), ARPC2(2), ARPC3(2), ARPC5(1), BAIAP2(1), BDKRB1(5), BDKRB2(9), BRAF(12), CD14(2), CDC42(5), CFL1(1), CFL2(8), CHRM1(6), CHRM2(9), CHRM3(9), CHRM4(9), CHRM5(13), CRK(1), CRKL(5), CSK(1), CYFIP1(13), CYFIP2(20), DIAPH1(11), DIAPH2(22), DIAPH3(26), DOCK1(32), EGF(24), EGFR(20), EZR(6), F2(9), F2R(8), FGD1(12), FGD3(12), FGF1(1), FGF10(1), FGF11(2), FGF12(4), FGF13(6), FGF14(3), FGF16(1), FGF17(1), FGF18(2), FGF21(3), FGF23(6), FGF5(8), FGF6(2), FGF7(6), FGF8(2), FGF9(2), FGFR1(10), FGFR4(11), FN1(39), GIT1(9), GNA12(10), GNA13(9), GNG12(2), GSN(5), IQGAP1(12), IQGAP2(26), IQGAP3(18), ITGA1(20), ITGA10(11), ITGA11(12), ITGA2(21), ITGA2B(11), ITGA3(6), ITGA4(12), ITGA5(12), ITGA6(12), ITGA7(10), ITGA8(16), ITGA9(15), ITGAD(11), ITGAE(14), ITGAL(13), ITGAM(24), ITGAV(10), ITGAX(9), ITGB1(12), ITGB2(14), ITGB3(16), ITGB4(12), ITGB5(8), ITGB6(6), ITGB7(8), ITGB8(5), LIMK1(7), MAP2K1(2), MAPK1(2), MAPK3(4), MOS(8), MRAS(3), MSN(15), MYH10(29), MYH14(22), MYH9(26), MYL2(1), MYL5(3), MYL7(4), MYL9(3), MYLK(17), MYLK2(7), MYLPF(2), NCKAP1(10), NCKAP1L(18), PAK1(3), PAK2(6), PAK3(14), PAK4(2), PAK6(3), PAK7(12), PDGFB(4), PDGFRA(29), PDGFRB(12), PFN1(1), PFN2(3), PIK3CB(19), PIK3CD(10), PIK3CG(25), PIK3R2(4), PIK3R3(8), PIK3R5(8), PIP4K2A(4), PIP4K2B(9), PIP4K2C(4), PIP5K1A(7), PIP5K1B(6), PIP5K1C(5), PPP1CA(6), PPP1CB(7), PPP1CC(2), PPP1R12A(12), PPP1R12B(18), PTK2(11), PXN(6), RAC2(2), RAF1(7), RDX(12), RHOA(4), ROCK1(27), ROCK2(15), RRAS(1), RRAS2(5), SCIN(3), SLC9A1(10), SOS1(21), SOS2(22), SSH1(13), SSH2(15), SSH3(3), TIAM1(26), TIAM2(21), TMSL3(1), VAV1(16), VAV2(5), VAV3(13), VCL(14), WASF1(3), WASF2(5), WASL(8) 87794021 1690 133 1651 553 456 694 217 80 223 20 0.00061 0.021 17 P38MAPKPATHWAY The Rho family GTPases activate the p38 MAPKs under environmental stress or in the presence of pro-inflammatory cytokines. ATF2, CDC42, CREB1, DAXX, DDIT3, ELK1, GRB2, HMGN1, HRAS, HSPB1, HSPB2, MAP2K4, MAP2K6, MAP3K1, MAP3K5, MAP3K7, MAP3K9, MAPK14, MAPKAPK2, MAPKAPK5, MAX, MEF2A, MEF2B, MEF2C, MEF2D, MKNK1, MYC, PDZGEF1, PLA2G4A, RAC1, RIPK1, RPS6KA5, SHC1, STAT1, TGFB1, TGFB2, TGFB3, TGFBR1, TRADD, TRAF2 36 ATF2(6), CDC42(5), CREB1(5), DAXX(11), DDIT3(1), ELK1(2), GRB2(3), HMGN1(1), HSPB2(1), MAP2K4(6), MAP2K6(9), MAP3K5(21), MAP3K7(8), MAP3K9(6), MAPK14(6), MAPKAPK2(6), MAPKAPK5(6), MAX(8), MEF2A(5), MEF2B(3), MEF2C(11), MEF2D(7), MKNK1(6), MYC(7), PLA2G4A(11), RIPK1(8), RPS6KA5(7), SHC1(11), STAT1(14), TGFB1(4), TGFB2(6), TGFB3(9), TGFBR1(8), TRAF2(5) 11710044 233 68 228 65 58 107 28 11 29 0 0.00064 0.021 18 ST_P38_MAPK_PATHWAY p38 is a MAP kinase regulated by cytokines and cellular stress. AKT1, ATF1, CDC42, CREB1, CREB3, CREB5, DUSP1, DUSP10, EEF2K, EIF4E, ELK1, GADD45A, HSPB1, IL1R1, MAP2K3, MAP2K4, MAP2K6, MAP3K10, MAP3K4, MAP3K5, MAP3K7, MAP3K7IP1, MAP3K7IP2, MAPK1, MAPK11, MAPK12, MAPK13, MAPK14, MAPKAPK2, MAPKAPK5, MKNK1, MKNK2, MYEF2, NFKB1, NR2C2, SRF, TRAF6 32 AKT1(8), ATF1(6), CDC42(5), CREB1(5), CREB3(2), CREB5(6), DUSP1(2), DUSP10(7), EEF2K(11), EIF4E(4), ELK1(2), IL1R1(5), MAP2K3(8), MAP2K4(6), MAP2K6(9), MAP3K10(7), MAP3K4(23), MAP3K5(21), MAP3K7(8), MAPK1(2), MAPK13(2), MAPK14(6), MAPKAPK2(6), MAPKAPK5(6), MKNK1(6), MKNK2(4), MYEF2(6), NFKB1(12), NR2C2(8), SRF(3), TRAF6(4) 11095097 210 64 203 61 49 100 30 9 22 0 0.00065 0.021 19 HSA04916_MELANOGENESIS Genes involved in melanogenesis ADCY1, ADCY2, ADCY3, ADCY4, ADCY5, ADCY6, ADCY7, ADCY8, ADCY9, ASIP, CALM1, CALM2, CALM3, CALML3, CALML6, CAMK2A, CAMK2B, CAMK2D, CAMK2G, CREB1, CREB3, CREB3L1, CREB3L2, CREB3L3, CREB3L4, CREBBP, CTNNB1, DCT, DVL1, DVL2, DVL3, EDN1, EDNRB, EP300, FZD1, FZD10, FZD2, FZD3, FZD4, FZD5, FZD6, FZD7, FZD8, FZD9, GNAI1, GNAI2, GNAI3, GNAO1, GNAQ, GNAS, GSK3B, HRAS, KIT, KITLG, KRAS, LEF1, LOC652788, MAP2K1, MAP2K2, MAPK1, MAPK3, MC1R, MITF, NRAS, PLCB1, PLCB2, PLCB3, PLCB4, POMC, PRKACA, PRKACB, PRKACG, PRKCA, PRKCB1, PRKCG, PRKX, PRKY, RAF1, TCF7, TCF7L1, TCF7L2, TYR, TYRP1, WNT1, WNT10A, WNT10B, WNT11, WNT16, WNT2, WNT2B, WNT3, WNT3A, WNT4, WNT5A, WNT5B, WNT6, WNT7A, WNT7B, WNT8A, WNT8B, WNT9A, WNT9B 92 ADCY1(17), ADCY2(17), ADCY3(8), ADCY4(8), ADCY5(11), ADCY6(16), ADCY7(6), ADCY8(16), ADCY9(25), CALM2(3), CALM3(1), CALML6(4), CAMK2A(8), CAMK2B(2), CAMK2D(7), CAMK2G(8), CREB1(5), CREB3(2), CREB3L1(6), CREB3L2(8), CREB3L3(9), CREB3L4(8), CREBBP(37), DCT(15), DVL2(12), DVL3(7), EDN1(2), EDNRB(2), EP300(29), FZD1(2), FZD10(7), FZD2(6), FZD3(7), FZD4(4), FZD6(15), FZD7(5), FZD9(7), GNAI1(4), GNAI2(7), GNAI3(3), GNAO1(5), GNAS(25), GSK3B(11), KIT(28), KITLG(2), LEF1(9), MAP2K1(2), MAPK1(2), MAPK3(4), MITF(3), PLCB1(6), PLCB2(9), PLCB3(9), PLCB4(20), POMC(2), PRKACA(4), PRKACB(2), PRKACG(6), PRKCA(10), PRKCG(10), PRKX(4), RAF1(7), TCF7(4), TCF7L1(5), TCF7L2(18), TYR(10), TYRP1(6), WNT1(1), WNT10A(4), WNT10B(1), WNT11(4), WNT16(6), WNT2(4), WNT2B(9), WNT3(5), WNT4(4), WNT5A(9), WNT5B(4), WNT7A(2), WNT7B(1), WNT8A(1), WNT8B(4), WNT9A(1), WNT9B(1) 34086658 650 104 631 239 173 260 89 39 87 2 0.00068 0.021 20 CARM_ERPATHWAY Methyltransferase CARM1 methylates CBP and co-activates estrogen receptors via Grip1. BRCA1, CARM1, CCND1, CREBBP, EP300, ERCC3, ESR1, GRIP1, GTF2A1, GTF2E1, GTF2F1, HDAC1, HDAC2, HDAC3, HDAC4, HDAC5, HDAC6, HIST2H3C, MEF2C, NCOR2, NR0B1, NRIP1, PELP1, POLR2A, PPARBP, PPARGC1, REA, SHARP, SRA1, TBP 23 BRCA1(19), CARM1(6), CREBBP(37), EP300(29), ERCC3(11), GRIP1(12), GTF2A1(5), GTF2E1(4), GTF2F1(6), HDAC1(4), HDAC2(5), HDAC3(10), HDAC4(18), HDAC5(15), HDAC6(22), MEF2C(11), NCOR2(24), NR0B1(8), NRIP1(18), PELP1(13), POLR2A(25), SRA1(3), TBP(5) 14668864 310 73 300 103 52 158 37 11 50 2 0.00069 0.021 21 SMOOTH_MUSCLE_CONTRACTION ACTA1, ACTA2, ACTC, ADCY1, ADCY2, ADCY3, ADCY4, ADCY5, ADCY6, ADCY7, ADCY8, ADCY9, ADM, ADMR, ARRB1, ARRB2, ATF1, ATF2, ATF3, ATF4, ATF5, ATP2A2, ATP2A3, CACNB3, CALCA, CALM1, CALM2, CALM3, CAMK2A, CAMK2B, CAMK2D, CAMK2G, CMKOR1, CNN1, CNN2, CORIN, CREB3, CREBL1, CREBL1, TNXB, CRH, CRHR1, DGKZ, EDG2, ETS2, FOS, GABPA, GABPB2, GBA2, GJA1, GNAQ, GNB1, GNB2, GNB3, GNB4, GNB5, GNG12, GNG13, GNG2, GNG3, GNG4, GNG5, GNG7, GNGT1, GRK4, GRK5, GRK6, GSTO1, GUCA2A, GUCA2B, GUCY1A3, HEAB, IGFBP1, IGFBP2, IGFBP3, IGFBP4, IGFBP6, IL1B, IL6, ITPR1, ITPR2, ITPR3, JUN, LGR7, LGR8, MAFF, MGC11266, MYL2, MYL4, MYLK2, NFKB1, NOS1, NOS3, OXT, OXTR, PDE4B, PDE4D, PKIA, PKIB, PKIG, PLCB3, PLCD1, PLCG1, PLCG2, PRKACA, PRKACB, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, PRKCA, PRKCB1, PRKCD, PRKCE, PRKCH, PRKCQ, PRKCZ, PRKD1, RAMP1, RAMP2, RAMP3, RCP9, RGS1, RGS10, RGS11, RGS14, RGS16, RGS17, RGS18, RGS19, RGS2, RGS20, RGS3, RGS4, RGS5, RGS6, RGS7, RGS9, RLN1, RYR1, RYR2, RYR3, SARA1, SFN, SLC8A1, SP1, USP5, YWHAB, YWHAH, YWHAQ, YWHAQ, MIB1 132 ACTA1(4), ACTA2(7), ADCY1(17), ADCY2(17), ADCY3(8), ADCY4(8), ADCY5(11), ADCY6(16), ADCY7(6), ADCY8(16), ADCY9(25), ADM(2), ARRB1(7), ARRB2(3), ATF1(6), ATF2(6), ATF3(4), ATF4(4), ATP2A2(9), ATP2A3(12), CACNB3(6), CALCA(1), CALM2(3), CALM3(1), CAMK2A(8), CAMK2B(2), CAMK2D(7), CAMK2G(8), CNN1(3), CORIN(11), CREB3(2), CRHR1(2), DGKZ(9), ETS2(5), FOS(6), GABPA(5), GABPB2(10), GBA2(13), GJA1(6), GNB1(3), GNB2(5), GNB3(4), GNB4(3), GNB5(3), GNG12(2), GNG13(2), GNG2(2), GNG3(3), GRK4(14), GRK5(10), GRK6(3), GSTO1(3), GUCA2A(1), GUCA2B(1), GUCY1A3(12), IGFBP1(5), IGFBP2(4), IGFBP3(7), IGFBP6(2), IL1B(2), IL6(2), ITPR1(31), ITPR2(38), ITPR3(23), JUN(1), MIB1(8), MYL2(1), MYL4(1), MYLK2(7), NFKB1(12), NOS1(21), NOS3(11), OXTR(4), PDE4B(17), PDE4D(7), PKIG(2), PLCB3(9), PLCD1(5), PLCG1(12), PLCG2(27), PRKACA(4), PRKACB(2), PRKAR1A(4), PRKAR2A(4), PRKAR2B(5), PRKCA(10), PRKCD(7), PRKCE(11), PRKCH(9), PRKCQ(13), PRKCZ(4), PRKD1(8), RAMP1(2), RAMP2(1), RAMP3(2), RGS1(6), RGS10(3), RGS14(5), RGS16(3), RGS17(5), RGS18(2), RGS2(3), RGS20(5), RGS3(15), RGS4(6), RGS5(4), RGS6(7), RGS7(9), RGS9(19), RLN1(3), RYR1(80), RYR2(111), RYR3(87), SLC8A1(20), SP1(6), TNXB(25), USP5(13), YWHAB(1), YWHAH(4), YWHAQ(3) 59891010 1157 116 1126 402 343 473 146 56 122 17 0.00082 0.023 22 PTENPATHWAY PTEN suppresses AKT-induced cell proliferation and antagonizes the action of PI3K. AKT1, BCAR1, CDKN1B, FOXO3A, GRB2, ILK, ITGB1, MAPK1, MAPK3, PDK2, PDPK1, PIK3CA, PIK3R1, PTEN, PTK2, SHC1, SOS1, TNFSF6 12 AKT1(8), CDKN1B(5), GRB2(3), ILK(8), ITGB1(12), MAPK1(2), MAPK3(4), PDK2(5), PDPK1(3), PTK2(11), SHC1(11), SOS1(21) 4707583 93 42 84 21 17 43 13 4 14 2 0.00082 0.023 23 INSULINPATHWAY Insulin regulates glucose levels via Ras-mediated transcriptional activation. CSNK2A1, ELK1, FOS, GRB2, HRAS, INS, INSR, IRS1, JUN, MAP2K1, MAPK3, MAPK8, PIK3CA, PIK3R1, PTPN11, RAF1, RASA1, SHC1, SLC2A4, SOS1, SRF 17 CSNK2A1(9), ELK1(2), FOS(6), GRB2(3), INSR(18), IRS1(17), JUN(1), MAP2K1(2), MAPK3(4), MAPK8(7), PTPN11(8), RAF1(7), SHC1(11), SLC2A4(4), SOS1(21), SRF(3) 6694629 123 53 120 34 36 54 14 6 11 2 0.00089 0.024 24 HSA04310_WNT_SIGNALING_PATHWAY Genes involved in Wnt signaling pathway APC, APC2, AXIN1, AXIN2, BTRC, CACYBP, CAMK2A, CAMK2B, CAMK2D, CAMK2G, CCND1, CCND2, CCND3, CER1, CHD8, CHP, CREBBP, CSNK1A1, CSNK1A1L, CSNK1E, CSNK2A1, CSNK2A2, CSNK2B, CTBP1, CTBP2, CTNNB1, CTNNBIP1, CUL1, CXXC4, DAAM1, DAAM2, DKK1, DKK2, DKK4, DVL1, DVL2, DVL3, EP300, FBXW11, FOSL1, FRAT1, FRAT2, FZD1, FZD10, FZD2, FZD3, FZD4, FZD5, FZD6, FZD7, FZD8, FZD9, GSK3B, JUN, LEF1, LOC652788, LRP5, LRP6, MAP3K7, MAPK10, MAPK8, MAPK9, MMP7, MYC, NFAT5, NFATC1, NFATC2, NFATC3, NFATC4, NKD1, NKD2, NLK, PLCB1, PLCB2, PLCB3, PLCB4, PORCN, PPARD, PPP2CA, PPP2CB, PPP2R1A, PPP2R1B, PPP2R2A, PPP2R2B, PPP2R2C, PPP3CA, PPP3CB, PPP3CC, PPP3R1, PPP3R2, PRICKLE1, PRICKLE2, PRKACA, PRKACB, PRKACG, PRKCA, PRKCB1, PRKCG, PRKX, PRKY, PSEN1, RAC1, RAC2, RAC3, RBX1, RHOA, ROCK1, ROCK2, RUVBL1, SENP2, SFRP1, SFRP2, SFRP4, SFRP5, SIAH1, SKP1, SMAD2, SMAD3, SMAD4, SOX17, TBL1X, TBL1XR1, TBL1Y, TCF7, TCF7L1, TCF7L2, TP53, VANGL1, VANGL2, WIF1, WNT1, WNT10A, WNT10B, WNT11, WNT16, WNT2, WNT2B, WNT3, WNT3A, WNT4, WNT5A, WNT5B, WNT6, WNT7A, WNT7B, WNT8A, WNT8B, WNT9A, WNT9B 130 AXIN1(8), AXIN2(1), BTRC(13), CACYBP(4), CAMK2A(8), CAMK2B(2), CAMK2D(7), CAMK2G(8), CCND2(7), CCND3(5), CER1(2), CHD8(39), CREBBP(37), CSNK1A1(5), CSNK1A1L(4), CSNK1E(10), CSNK2A1(9), CSNK2A2(5), CTBP2(7), CTNNBIP1(2), CUL1(12), CXXC4(1), DAAM1(17), DAAM2(14), DKK1(4), DKK2(4), DKK4(3), DVL2(12), DVL3(7), EP300(29), FBXW11(5), FOSL1(4), FZD1(2), FZD10(7), FZD2(6), FZD3(7), FZD4(4), FZD6(15), FZD7(5), FZD9(7), GSK3B(11), JUN(1), LEF1(9), LRP5(18), LRP6(18), MAP3K7(8), MAPK10(9), MAPK8(7), MAPK9(7), MMP7(3), MYC(7), NFAT5(13), NFATC2(15), NFATC3(12), NFATC4(8), NKD1(4), NLK(5), PLCB1(6), PLCB2(9), PLCB3(9), PLCB4(20), PORCN(12), PPARD(6), PPP2CA(6), PPP2CB(2), PPP2R1B(9), PPP2R2A(15), PPP2R2B(12), PPP2R2C(3), PPP3CA(4), PPP3CB(7), PPP3CC(6), PPP3R1(2), PPP3R2(1), PRICKLE1(8), PRICKLE2(6), PRKACA(4), PRKACB(2), PRKACG(6), PRKCA(10), PRKCG(10), PRKX(4), PSEN1(4), RAC2(2), RBX1(1), RHOA(4), ROCK1(27), ROCK2(15), RUVBL1(2), SENP2(11), SFRP1(5), SFRP2(3), SFRP4(10), SFRP5(2), SIAH1(3), SKP1(2), SMAD2(12), SMAD3(4), SMAD4(5), TBL1X(7), TBL1XR1(15), TCF7(4), TCF7L1(5), TCF7L2(18), VANGL1(5), VANGL2(10), WIF1(5), WNT1(1), WNT10A(4), WNT10B(1), WNT11(4), WNT16(6), WNT2(4), WNT2B(9), WNT3(5), WNT4(4), WNT5A(9), WNT5B(4), WNT7A(2), WNT7B(1), WNT8A(1), WNT8B(4), WNT9A(1), WNT9B(1) 49067417 924 114 903 287 253 365 127 40 127 12 0.00093 0.024 25 MTORPATHWAY Mammalian target of rapamycin (mTOR) senses mitogenic factors and nutrients, including ATP, and induces cell proliferation. AKT1, EIF3S10, EIF4A1, EIF4A2, EIF4B, EIF4E, EIF4EBP1, EIF4G1, EIF4G2, EIF4G3, FKBP1A, FRAP1, MKNK1, PDK2, PDPK1, PIK3CA, PIK3R1, PPP2CA, PTEN, RPS6, RPS6KB1, TSC1, TSC2 18 AKT1(8), EIF4A1(4), EIF4A2(6), EIF4B(6), EIF4E(4), EIF4G1(15), EIF4G2(8), EIF4G3(26), MKNK1(6), PDK2(5), PDPK1(3), PPP2CA(6), RPS6(6), RPS6KB1(3), TSC1(13), TSC2(14) 7363829 133 56 129 33 27 64 13 9 20 0 0.0016 0.039 26 SA_TRKA_RECEPTOR The TrkA receptor binds nerve growth factor to activate MAP kinase pathways and promote cell growth. AKT1, AKT2, AKT3, ARHA, CDKN1A, ELK1, GRB2, HRAS, MAP2K1, MAP2K2, NGFB, NGFR, NTRK1, PIK3CA, PIK3CD, SHC1, SOS1 13 AKT1(8), AKT2(4), AKT3(8), CDKN1A(1), ELK1(2), GRB2(3), MAP2K1(2), NGFR(4), NTRK1(11), PIK3CD(10), SHC1(11), SOS1(21) 4456155 85 42 79 23 23 39 9 5 7 2 0.0016 0.039 27 IL2RBPATHWAY The beta subunit of the IL-2 receptor is required for IL-2 and IL-15 signal recognition and activates JAK kinase on ligand binding. AKT1, BAD, BCL2, BCL2L1, CBL, CFLAR, CRKL, E2F1, FOS, GRB2, HRAS, IL2RA, IL2RB, IL2RG, IRS1, JAK1, JAK3, MAPK1, MAPK3, MYC, NMI, PIK3CA, PIK3R1, PPIA, PTPN6, RAF1, RPS6KB1, SHC1, SOCS1, SOCS3, SOS1, STAT5A, STAT5B, SYK, TNFRSF6, TNFSF6, ZNFN1A3 29 AKT1(8), BAD(2), BCL2L1(3), CBL(10), CFLAR(7), CRKL(5), FOS(6), GRB2(3), IL2RA(3), IL2RB(6), IL2RG(11), IRS1(17), JAK3(9), MAPK1(2), MAPK3(4), MYC(7), NMI(1), PPIA(2), RAF1(7), RPS6KB1(3), SHC1(11), SOS1(21), STAT5A(5), STAT5B(5), SYK(6) 10038478 164 60 159 38 45 81 16 6 14 2 0.0017 0.039 28 IL4PATHWAY IL-4 promotes Th2 cell differentiation via a heterodimeric receptor that activates Stat6/JAK and MAP kinase pathways. AKT1, GRB2, IL2RG, IL4, IL4R, IRS1, JAK1, JAK3, RPS6KB1, SHC1, STAT6 10 AKT1(8), GRB2(3), IL2RG(11), IL4R(6), IRS1(17), JAK3(9), RPS6KB1(3), SHC1(11), STAT6(10) 4375612 78 43 75 21 18 42 8 2 8 0 0.0019 0.040 29 GCRPATHWAY Corticosteroids activate the glucocorticoid receptor (GR), which inhibits NF-kB and activates Annexin-1, thus inhibiting the inflammatory response. ADRB2, AKT1, ANXA1, CALM1, CALM2, CALM3, CRN, GNAS, GNB1, GNGT1, HSPCA, NFKB1, NOS3, NPPA, NR3C1, PIK3CA, PIK3R1, RELA, SYT1 15 ADRB2(8), AKT1(8), ANXA1(4), CALM2(3), CALM3(1), GNAS(25), GNB1(3), NFKB1(12), NOS3(11), NPPA(1), NR3C1(13), RELA(6), SYT1(4) 4530962 99 44 93 22 25 46 13 2 13 0 0.0019 0.040 30 HSA04330_NOTCH_SIGNALING_PATHWAY Genes involved in Notch signaling pathway ADAM17, APH1A, CIR, CREBBP, CTBP1, CTBP2, DLL1, DLL3, DLL4, DTX1, DTX2, DTX3, DTX3L, DTX4, DVL1, DVL2, DVL3, EP300, GCN5L2, HDAC1, HDAC2, HES1, JAG1, JAG2, LFNG, LOC652788, MAML1, MAML2, MAML3, MFNG, NCOR2, NCSTN, NOTCH1, NOTCH2, NOTCH3, NOTCH4, NUMB, NUMBL, PCAF, PSEN1, PSEN2, PSENEN, PTCRA, RBPJ, RBPJL, RFNG, SNW1 37 ADAM17(11), APH1A(1), CREBBP(37), CTBP2(7), DLL1(8), DLL3(5), DLL4(2), DTX1(5), DTX2(4), DTX3(5), DTX3L(8), DTX4(7), DVL2(12), DVL3(7), EP300(29), HDAC1(4), HDAC2(5), HES1(1), JAG1(15), MAML1(8), MAML2(9), MAML3(16), MFNG(5), NCOR2(24), NCSTN(10), NOTCH2(17), NOTCH3(31), NOTCH4(15), NUMB(11), NUMBL(4), PSEN1(4), PSEN2(5), PTCRA(1), RBPJ(7), RBPJL(8), SNW1(5) 19803062 353 80 347 115 91 159 40 17 42 4 0.0021 0.043 31 RELAPATHWAY Acetylated NF-kB proteins are immune to IkB regulation and promote transcription until the histone deacetylase HDAC3 deacetylates the RelA subunit of NF-kB. CHUK, CREBBP, EP300, FADD, HDAC3, IKBKB, IKBKG, NFKB1, NFKBIA, RELA, RIPK1, TNF, TNFRSF1A, TNFRSF1B, TRADD, TRAF6 14 CHUK(11), CREBBP(37), EP300(29), FADD(1), HDAC3(10), IKBKB(15), NFKB1(12), NFKBIA(3), RELA(6), RIPK1(8), TNF(1), TNFRSF1A(6), TNFRSF1B(3), TRAF6(4) 7582992 146 51 141 43 27 59 25 7 28 0 0.0022 0.043 32 STARCH_AND_SUCROSE_METABOLISM AGL, AMY1A, AMY1B, AMY1C, AMY2A, AMY2B, AMY2B, RNPC3, ENPP1, ENPP3, G6PC, GAA, GANAB, GBA3, GBE1, GCK, GPI, GUSB, GYS1, GYS2, HK1, HK2, HK3, MGAM, PGM1, PGM3, PYGB, PYGL, PYGM, SI, UCHL1, UCHL3, UGDH, UGT1A10, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, UGT1A6, UGT1A8, UGT1A9, UGT2B15, UGT2B4, UXS1 40 AGL(18), AMY2A(7), AMY2B(11), ENPP1(11), ENPP3(16), G6PC(6), GAA(5), GANAB(13), GBA3(9), GBE1(12), GCK(5), GPI(9), GUSB(5), GYS1(12), GYS2(19), HK1(13), HK2(8), HK3(12), MGAM(49), PGM1(9), PGM3(6), PYGB(10), PYGL(9), PYGM(10), SI(47), UCHL1(5), UCHL3(1), UGDH(3), UGT1A1(6), UGT1A10(8), UGT1A3(4), UGT1A4(4), UGT1A5(7), UGT1A6(5), UGT1A7(9), UGT1A8(4), UGT1A9(4), UGT2B15(9), UGT2B4(10), UXS1(5) 19412775 415 80 403 96 118 151 64 26 56 0 0.0028 0.053 33 P53HYPOXIAPATHWAY Hypoxia induces p53 accumulation and consequent apoptosis with p53-mediated cell cycle arrest, which is present under conditions of DNA damage. ABCB1, AKT1, ATM, BAX, CDKN1A, CPB2, CSNK1A1, CSNK1D, FHL2, GADD45A, HIC1, HIF1A, HSPA1A, HSPCA, IGFBP3, MAPK8, MDM2, NFKBIB, NQO1, TP53 15 ABCB1(28), AKT1(8), BAX(4), CDKN1A(1), CPB2(7), CSNK1A1(5), FHL2(1), HIF1A(17), IGFBP3(7), MAPK8(7), MDM2(6), NFKBIB(3), NQO1(3) 4481489 97 42 91 30 28 34 12 6 15 2 0.0028 0.053 34 HSA04630_JAK_STAT_SIGNALING_PATHWAY Genes involved in Jak-STAT signaling pathway AKT1, AKT2, AKT3, BCL2L1, CBL, CBLB, CBLC, CCND1, CCND2, CCND3, CISH, CLCF1, CNTF, CNTFR, CREBBP, CRLF2, CSF2, CSF2RA, CSF2RB, CSF3, CSF3R, CTF1, EP300, EPO, EPOR, GH1, GH2, GHR, GRB2, IFNA1, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA2, IFNA21, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, IFNAR1, IFNAR2, IFNB1, IFNE1, IFNG, IFNGR1, IFNGR2, IFNK, IFNW1, IL10, IL10RA, IL10RB, IL11, IL11RA, IL12A, IL12B, IL12RB1, IL12RB2, IL13, IL13RA1, IL13RA2, IL15, IL15RA, IL19, IL2, IL20, IL20RA, IL21, IL21R, IL22, IL22RA1, IL22RA2, IL23A, IL23R, IL24, IL26, IL28A, IL28B, IL28RA, IL29, IL2RA, IL2RB, IL2RG, IL3, IL3RA, IL4, IL4R, IL5, IL5RA, IL6, IL6R, IL6ST, IL7, IL7R, IL9, IL9R, IRF9, JAK1, JAK2, JAK3, LEP, LEPR, LIF, LIFR, MPL, MYC, OSM, OSMR, PIAS1, PIAS2, PIAS3, PIAS4, PIK3CA, PIK3CB, PIK3CD, PIK3CG, PIK3R1, PIK3R2, PIK3R3, PIK3R5, PIM1, PRL, PRLR, PTPN11, PTPN6, SOCS1, SOCS2, SOCS3, SOCS4, SOCS5, SOCS7, SOS1, SOS2, SPRED1, SPRED2, SPRY1, SPRY2, SPRY3, SPRY4, STAM, STAM2, STAT1, STAT2, STAT3, STAT4, STAT5A, STAT5B, STAT6, TPO, TSLP, TYK2 144 AKT1(8), AKT2(4), AKT3(8), BCL2L1(3), CBL(10), CBLB(15), CBLC(5), CCND2(7), CCND3(5), CLCF1(2), CNTF(3), CNTFR(2), CREBBP(37), CSF2RA(9), CSF2RB(11), CSF3(1), CSF3R(11), EP300(29), EPO(2), EPOR(4), GH1(6), GH2(5), GHR(10), GRB2(3), IFNA10(2), IFNA13(3), IFNA14(3), IFNA16(2), IFNA17(2), IFNA2(1), IFNA21(2), IFNA4(3), IFNA5(2), IFNA6(6), IFNA7(2), IFNA8(2), IFNAR1(9), IFNAR2(8), IFNB1(4), IFNG(5), IFNGR1(6), IFNGR2(4), IFNK(2), IFNW1(2), IL10(4), IL10RA(7), IL10RB(9), IL11RA(7), IL12A(7), IL12B(3), IL12RB1(16), IL12RB2(11), IL13RA1(14), IL13RA2(3), IL15(1), IL15RA(3), IL19(1), IL2(4), IL20(6), IL20RA(3), IL21(2), IL21R(6), IL22RA1(2), IL22RA2(1), IL23A(4), IL23R(8), IL24(7), IL26(7), IL28A(2), IL28B(4), IL28RA(8), IL29(2), IL2RA(3), IL2RB(6), IL2RG(11), IL3RA(11), IL4R(6), IL5(2), IL5RA(9), IL6(2), IL6R(12), IL6ST(10), IL7(2), IL7R(9), IRF9(6), JAK2(21), JAK3(9), LEP(2), LEPR(15), LIF(3), LIFR(22), MPL(5), MYC(7), OSM(3), OSMR(12), PIAS1(5), PIAS2(12), PIAS3(9), PIAS4(4), PIK3CB(19), PIK3CD(10), PIK3CG(25), PIK3R2(4), PIK3R3(8), PIK3R5(8), PIM1(4), PRL(6), PRLR(6), PTPN11(8), SOCS2(7), SOCS4(4), SOCS5(12), SOCS7(4), SOS1(21), SOS2(22), SPRED1(8), SPRED2(7), SPRY1(4), SPRY2(6), SPRY4(2), STAM(7), STAM2(7), STAT1(14), STAT2(12), STAT3(12), STAT4(9), STAT5A(5), STAT5B(5), STAT6(10), TPO(18), TSLP(2), TYK2(7) 47675003 943 119 920 262 258 369 130 53 119 14 0.0033 0.058 35 HISTONE_METHYLTRANSFERASE Genes with HMT activity AOF2, KDM6A, ASH1L, ASH2L, C17orf79, CARM1, CTCFL, DOT1L, EED, EHMT1, EHMT2, EZH1, EZH2, FBXL10, FBXL11, FBXO11, HCFC1, HSF4, JMJD1A, JMJD1B, JMJD2A, JMJD2B, JMJD2C, JMJD2D, JMJD3, JMJD4, JMJD6, MEN1, MLL, MLL2, MLL3, MLL4, MLL5, NSD1, OGT, PAXIP1, PPP1CA, PPP1CB, PPP1CC, PRDM2, PRDM6, PRDM7, PRDM9, PRMT1, PRMT5, PRMT6, PRMT7, PRMT8, RBBP5, SATB1, SETD1A, SETD1B, SETD2, SETD7, SETD8, SETDB1, SETDB2, SETMAR, SMYD3, STK38, SUV39H1, SUV39H2, SUV420H1, SUV420H2, SUZ12, WHSC1, WHSC1L1 54 ASH1L(40), ASH2L(11), C17orf79(4), CARM1(6), CTCFL(15), DOT1L(8), EED(6), EHMT2(6), EZH1(11), EZH2(14), FBXO11(8), HCFC1(27), HSF4(2), JMJD4(3), JMJD6(3), KDM6A(10), MEN1(5), MLL(38), MLL2(64), MLL3(71), MLL5(22), NSD1(36), OGT(19), PAXIP1(2), PPP1CA(6), PPP1CB(7), PPP1CC(2), PRDM2(23), PRDM9(28), PRMT1(7), PRMT5(11), PRMT6(6), PRMT7(4), PRMT8(9), RBBP5(9), SATB1(14), SETD1A(12), SETD2(31), SETD7(6), SETD8(3), SETDB1(19), SETDB2(12), SETMAR(6), SMYD3(4), STK38(7), SUV39H1(10), SUV39H2(6), SUV420H1(11), SUZ12(8), WHSC1(25), WHSC1L1(24) 39661572 741 106 717 173 174 280 108 32 126 21 0.0033 0.058 36 HSA04520_ADHERENS_JUNCTION Genes involved in adherens junction ACP1, ACTB, ACTG1, ACTN1, ACTN2, ACTN3, ACTN4, ACVR1B, ACVR1C, BAIAP2, CDC42, CDH1, CREBBP, CSNK2A1, CSNK2A2, CSNK2B, CTNNA1, CTNNA2, CTNNA3, CTNNB1, CTNND1, EGFR, EP300, ERBB2, FARP2, FER, FGFR1, FYN, IGF1R, INSR, IQGAP1, LEF1, LMO7, MAP3K7, MAPK1, MAPK3, MET, MLLT4, NLK, PARD3, PTPN1, PTPN6, PTPRB, PTPRF, PTPRJ, PTPRM, PVRL1, PVRL2, PVRL3, PVRL4, RAC1, RAC2, RAC3, RHOA, SMAD2, SMAD3, SMAD4, SNAI1, SNAI2, SORBS1, SRC, SSX2IP, TCF7, TCF7L1, TCF7L2, TGFBR1, TGFBR2, TJP1, VCL, WAS, WASF1, WASF2, WASF3, WASL, YES1 72 ACP1(4), ACTB(5), ACTN1(13), ACTN2(9), ACTN3(10), ACTN4(11), ACVR1B(6), ACVR1C(7), BAIAP2(1), CDC42(5), CDH1(15), CREBBP(37), CSNK2A1(9), CSNK2A2(5), CTNNA1(18), CTNNA2(13), CTNNA3(13), CTNND1(22), EGFR(20), EP300(29), ERBB2(6), FARP2(18), FER(14), FGFR1(10), FYN(7), IGF1R(13), INSR(18), IQGAP1(12), LEF1(9), LMO7(27), MAP3K7(8), MAPK1(2), MAPK3(4), MET(10), MLLT4(32), NLK(5), PARD3(27), PTPN1(4), PTPRB(31), PTPRF(34), PTPRJ(16), PTPRM(19), PVRL1(9), PVRL2(5), PVRL3(9), PVRL4(5), RAC2(2), RHOA(4), SMAD2(12), SMAD3(4), SMAD4(5), SNAI1(2), SNAI2(8), SORBS1(22), SRC(2), SSX2IP(10), TCF7(4), TCF7L1(5), TCF7L2(18), TGFBR1(8), TGFBR2(6), TJP1(33), VCL(14), WASF1(3), WASF2(5), WASF3(9), WASL(8), YES1(5) 40570967 795 108 770 224 224 304 98 41 114 14 0.0035 0.058 37 ST_GA13_PATHWAY G-alpha-13 influences the actin cytoskeleton and activates protein kinase D, PI3K, and Pyk2. AKT1, AKT2, AKT3, ARHGEF11, BCL2, BF, CDC42, DLG4, GNA13, IKBKG, LPA, MAP2K4, MAP3K1, MAP3K5, MAPK8, NFKB1, NFKB2, NFKBIA, NFKBIB, NFKBIE, NFKBIL1, NFKBIL2, PDK1, PHKA2, PI3, PIK3CB, PLD1, PLD2, PLD3, PRKCM, PTK2, RDX, ROCK1, ROCK2, SERPINA4, SRF, TBXA2R 32 AKT1(8), AKT2(4), AKT3(8), ARHGEF11(22), CDC42(5), DLG4(13), GNA13(9), LPA(14), MAP2K4(6), MAP3K5(21), MAPK8(7), NFKB1(12), NFKB2(10), NFKBIA(3), NFKBIB(3), NFKBIE(6), NFKBIL1(2), PDK1(7), PHKA2(15), PI3(3), PIK3CB(19), PLD1(16), PLD2(7), PLD3(3), PTK2(11), RDX(12), ROCK1(27), ROCK2(15), SERPINA4(8), SRF(3) 15807938 299 72 287 78 67 125 37 12 50 8 0.0035 0.058 38 PPARGPATHWAY PPAR-gamma is a nuclear hormone receptor that is activated by fatty acids and regulates transcription through co-activations like Src-1 and Tif2. CREBBP, EP300, LPL, NCOA1, NCOA2, PPARBP, PPARG, PPARGC1, RXRA 7 CREBBP(37), EP300(29), LPL(11), NCOA1(17), NCOA2(16), PPARG(5), RXRA(1) 6354293 116 50 113 35 29 42 17 8 20 0 0.0040 0.064 39 ST_PHOSPHOINOSITIDE_3_KINASE_PATHWAY The phosphoinositide-3 kinase pathway produces the lipid second messenger PIP3 and regulates cell growth, survival, and movement. A1BG, AKT1, AKT2, AKT3, BAD, BTK, CDKN2A, CSL4, DAF, DAPP1, FOXO1A, GRB2, GSK3A, GSK3B, IARS, IGFBP1, INPP5D, P14, PDK1, PIK3CA, PPP1R13B, PSCD3, PTEN, RPS6KA1, RPS6KA2, RPS6KA3, RPS6KB1, SFN, SHC1, SOS1, SOS2, TEC, YWHAB, YWHAE, YWHAG, YWHAH, YWHAQ, YWHAZ 31 A1BG(3), AKT1(8), AKT2(4), AKT3(8), BAD(2), BTK(11), CDKN2A(1), DAPP1(7), GRB2(3), GSK3A(9), GSK3B(11), IARS(13), IGFBP1(5), INPP5D(14), PDK1(7), PPP1R13B(7), RPS6KA1(5), RPS6KA2(16), RPS6KA3(17), RPS6KB1(3), SHC1(11), SOS1(21), SOS2(22), TEC(5), YWHAB(1), YWHAE(1), YWHAG(3), YWHAH(4), YWHAQ(3), YWHAZ(1) 11502831 226 63 214 53 49 94 34 9 36 4 0.0041 0.064 40 GHPATHWAY Growth hormone receptors dimerize on ligand binding and activate the JAK2 protein kinase. GH1, GHR, GRB2, HRAS, INS, INSR, IRS1, JAK2, MAP2K1, MAPK1, MAPK3, PIK3CA, PIK3R1, PLCG1, PRKCA, PRKCB1, PTPN6, RAF1, RPS6KA1, SHC1, SLC2A4, SOCS1, SOS1, SRF, STAT5A, STAT5B, TCF1 21 GH1(6), GHR(10), GRB2(3), INSR(18), IRS1(17), JAK2(21), MAP2K1(2), MAPK1(2), MAPK3(4), PLCG1(12), PRKCA(10), RAF1(7), RPS6KA1(5), SHC1(11), SLC2A4(4), SOS1(21), SRF(3), STAT5A(5), STAT5B(5) 10024855 166 60 160 51 41 64 25 10 18 8 0.0045 0.070 41 ST_INTERLEUKIN_4_PATHWAY Like IL-13, IL-4 is produced by Th2 cells on activation of the T cell antigen receptor, and by mast and basophil cells on activation of the IgE receptor. AKT1, AKT2, AKT3, CISH, GRB2, IARS, IL13RA1, IL2RG, IL4, IL4R, INPP5D, JAK1, JAK2, JAK3, NR0B2, PI3, PIK3CA, PPP1R13B, RPS6KB1, SERPINA4, SHC1, SOS1, SOS2, SRC, STAT6, TYK2 24 AKT1(8), AKT2(4), AKT3(8), GRB2(3), IARS(13), IL13RA1(14), IL2RG(11), IL4R(6), INPP5D(14), JAK2(21), JAK3(9), NR0B2(2), PI3(3), PPP1R13B(7), RPS6KB1(3), SERPINA4(8), SHC1(11), SOS1(21), SOS2(22), SRC(2), STAT6(10), TYK2(7) 11196194 207 61 198 54 42 90 31 10 24 10 0.0047 0.071 42 CARM1PATHWAY The methyltransferase CARM1 interacts with transcription factors such as CBP/p300 and methylates histones H3 and H4. CARM1, CREB1, CREBBP, EP300, NCOA3, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, RARA, RXRA 12 CARM1(6), CREB1(5), CREBBP(37), EP300(29), NCOA3(8), PRKACB(2), PRKACG(6), PRKAR1A(4), PRKAR2A(4), PRKAR2B(5), RARA(3), RXRA(1) 6856671 110 50 106 38 30 39 12 6 23 0 0.0050 0.073 43 SIG_INSULIN_RECEPTOR_PATHWAY_IN_CARDIAC_MYOCYTES Genes related to the insulin receptor pathway AKT1, AKT2, AKT3, BRD4, CAP1, CBL, CDC42, CDKN2A, F2RL2, FLOT1, FLOT2, FOXO1A, GRB2, GSK3A, GSK3B, IGFBP1, INPPL1, IRS1, IRS2, IRS4, LNPEP, MAPK1, MAPK3, PARD3, PARD6A, PDK1, PIK3CA, PIK3CD, PIK3R1, PPYR1, PSCD3, PTEN, PTPN1, RAF1, RPS6KA1, RPS6KA2, RPS6KA3, RPS6KB1, SERPINB6, SFN, SHC1, SLC2A4, SORBS1, SOS1, SOS2, YWHAB, YWHAE, YWHAG, YWHAH, YWHAQ, YWHAZ 44 AKT1(8), AKT2(4), AKT3(8), BRD4(9), CAP1(7), CBL(10), CDC42(5), CDKN2A(1), F2RL2(3), FLOT1(1), FLOT2(3), GRB2(3), GSK3A(9), GSK3B(11), IGFBP1(5), IRS1(17), IRS4(20), LNPEP(9), MAPK1(2), MAPK3(4), PARD3(27), PARD6A(1), PDK1(7), PIK3CD(10), PPYR1(7), PTPN1(4), RAF1(7), RPS6KA1(5), RPS6KA2(16), RPS6KA3(17), RPS6KB1(3), SERPINB6(4), SHC1(11), SLC2A4(4), SORBS1(22), SOS1(21), SOS2(22), YWHAB(1), YWHAE(1), YWHAG(3), YWHAH(4), YWHAQ(3), YWHAZ(1) 17688151 340 77 326 101 86 128 54 16 52 4 0.0051 0.073 44 NTHIPATHWAY Hemophilus influenzae infections activate NF-kB via several pathways, inducing the inflammatory response. CHUK, CREBBP, DUSP1, EP300, IKBKB, IL1B, IL8, MADH3, MADH4, MAP2K3, MAP2K6, MAP3K14, MAP3K7, MAPK11, MAPK14, MYD88, NFKB1, NFKBIA, NR3C1, RELA, TGFBR1, TGFBR2, TLR2, TNF 21 CHUK(11), CREBBP(37), DUSP1(2), EP300(29), IKBKB(15), IL1B(2), IL8(3), MAP2K3(8), MAP2K6(9), MAP3K14(12), MAP3K7(8), MAPK14(6), MYD88(1), NFKB1(12), NFKBIA(3), NR3C1(13), RELA(6), TGFBR1(8), TGFBR2(6), TLR2(12), TNF(1) 9997609 204 57 199 58 50 77 33 12 32 0 0.0058 0.081 45 WNT_SIGNALING Wnt signaling genes APC, ARHA, AXIN1, C2orf31, CCND1, CCND2, CCND3, CSNK1E, CSNK1E, LOC400927, CTNNB1, DIPA, DVL1, DVL2, DVL3, FBXW2, FOSL1, FRAT1, FZD1, FZD10, FZD2, FZD3, FZD5, FZD6, FZD7, FZD8, FZD9, GSK3B, JUN, LDLR, MAPK10, MAPK9, MYC, PAFAH1B1, PLAU, PPP2R5C, PPP2R5E, PRKCA, PRKCB1, PRKCD, PRKCE, PRKCG, PRKCH, PRKCI, PRKCM, PRKCQ, PRKCZ, PRKD1, RAC1, RHOA, SFRP4, TCF7, WNT1, WNT10A, WNT10B, WNT11, WNT16, WNT2, WNT2B, WNT3, WNT4, WNT5A, WNT5B, WNT6, WNT7A, WNT7B 52 AXIN1(8), CCND2(7), CCND3(5), CSNK1E(10), DVL2(12), DVL3(7), FBXW2(3), FOSL1(4), FZD1(2), FZD10(7), FZD2(6), FZD3(7), FZD6(15), FZD7(5), FZD9(7), GSK3B(11), JUN(1), LDLR(12), MAPK10(9), MAPK9(7), MYC(7), PAFAH1B1(1), PLAU(5), PPP2R5C(6), PPP2R5E(7), PRKCA(10), PRKCD(7), PRKCE(11), PRKCG(10), PRKCH(9), PRKCI(8), PRKCQ(13), PRKCZ(4), PRKD1(8), RHOA(4), SFRP4(10), TCF7(4), WNT1(1), WNT10A(4), WNT10B(1), WNT11(4), WNT16(6), WNT2(4), WNT2B(9), WNT3(5), WNT4(4), WNT5A(9), WNT5B(4), WNT7A(2), WNT7B(1) 16167155 323 75 312 120 103 120 44 18 34 4 0.0062 0.085 46 HSA04150_MTOR_SIGNALING_PATHWAY Genes involved in mTOR signaling pathway AKT1, AKT2, AKT3, BRAF, CAB39, DDIT4, EIF4B, EIF4EBP1, FIGF, FRAP1, GBL, HIF1A, IGF1, INS, KIAA1303, LYK5, MAPK1, MAPK3, PDPK1, PGF, PIK3CA, PIK3CB, PIK3CD, PIK3CG, PIK3R1, PIK3R2, PIK3R3, PIK3R5, PRKAA1, PRKAA2, RHEB, RICTOR, RPS6, RPS6KA1, RPS6KA2, RPS6KA3, RPS6KA6, RPS6KB1, RPS6KB2, STK11, TSC1, TSC2, ULK1, ULK2, ULK3, VEGFA, VEGFB, VEGFC 39 AKT1(8), AKT2(4), AKT3(8), BRAF(12), CAB39(6), DDIT4(3), EIF4B(6), FIGF(5), HIF1A(17), IGF1(3), MAPK1(2), MAPK3(4), PDPK1(3), PGF(2), PIK3CB(19), PIK3CD(10), PIK3CG(25), PIK3R2(4), PIK3R3(8), PIK3R5(8), PRKAA1(6), PRKAA2(9), RHEB(2), RICTOR(25), RPS6(6), RPS6KA1(5), RPS6KA2(16), RPS6KA3(17), RPS6KA6(15), RPS6KB1(3), RPS6KB2(6), TSC1(13), TSC2(14), ULK2(10), ULK3(5), VEGFA(1), VEGFB(2), VEGFC(7) 15038358 319 75 305 87 82 123 40 22 52 0 0.0064 0.085 47 IL7PATHWAY IL-7 is required for B and T cell development and proliferation and may contribute to activation of VDJ recombination. BCL2, CREBBP, EP300, FYN, IL2RG, IL7, IL7R, JAK1, JAK3, LCK, NMI, PIK3CA, PIK3R1, PTK2B, STAT5A, STAT5B 13 CREBBP(37), EP300(29), FYN(7), IL2RG(11), IL7(2), IL7R(9), JAK3(9), LCK(5), NMI(1), PTK2B(16), STAT5A(5), STAT5B(5) 7436007 136 51 134 47 41 55 15 6 19 0 0.0065 0.085 48 ST_B_CELL_ANTIGEN_RECEPTOR B cell receptors bind antigens and promote B cell activation. AKT1, AKT2, AKT3, BAD, BCR, BLNK, BTK, CD19, CSK, DAG1, EPHB2, GRB2, ITPKA, ITPKB, LYN, MAP2K1, MAP2K2, MAPK1, NFAT5, NFKB1, NFKB2, NFKBIA, NFKBIB, NFKBIE, NFKBIL1, NFKBIL2, PAG, PI3, PIK3CA, PIK3CD, PIK3R1, PLCG2, PPP1R13B, RAF1, SERPINA4, SHC1, SOS1, SOS2, SYK, VAV1 35 AKT1(8), AKT2(4), AKT3(8), BAD(2), BCR(6), BLNK(4), BTK(11), CD19(7), CSK(1), DAG1(7), EPHB2(10), GRB2(3), ITPKB(6), LYN(7), MAP2K1(2), MAPK1(2), NFAT5(13), NFKB1(12), NFKB2(10), NFKBIA(3), NFKBIB(3), NFKBIE(6), NFKBIL1(2), PI3(3), PIK3CD(10), PLCG2(27), PPP1R13B(7), RAF1(7), SERPINA4(8), SHC1(11), SOS1(21), SOS2(22), SYK(6), VAV1(16) 16040963 275 72 263 98 69 119 40 13 28 6 0.0073 0.094 49 HSA04012_ERBB_SIGNALING_PATHWAY Genes involved in ErbB signaling pathway ABL1, ABL2, AKT1, AKT2, AKT3, ARAF, AREG, BAD, BRAF, BTC, CAMK2A, CAMK2B, CAMK2D, CAMK2G, CBL, CBLB, CBLC, CDKN1A, CDKN1B, CRK, CRKL, EGF, EGFR, EIF4EBP1, ELK1, ERBB2, ERBB3, ERBB4, EREG, FRAP1, GAB1, GRB2, GSK3B, HBEGF, HRAS, JUN, KRAS, MAP2K1, MAP2K2, MAP2K4, MAP2K7, MAPK1, MAPK10, MAPK3, MAPK8, MAPK9, MYC, NCK1, NCK2, NRAS, NRG1, NRG2, NRG3, NRG4, PAK1, PAK2, PAK3, PAK4, PAK6, PAK7, PIK3CA, PIK3CB, PIK3CD, PIK3CG, PIK3R1, PIK3R2, PIK3R3, PIK3R5, PLCG1, PLCG2, PRKCA, PRKCB1, PRKCG, PTK2, RAF1, RPS6KB1, RPS6KB2, SHC1, SHC2, SHC3, SHC4, SOS1, SOS2, SRC, STAT5A, STAT5B, TGFA 78 ABL1(9), ABL2(19), AKT1(8), AKT2(4), AKT3(8), ARAF(8), BAD(2), BRAF(12), BTC(5), CAMK2A(8), CAMK2B(2), CAMK2D(7), CAMK2G(8), CBL(10), CBLB(15), CBLC(5), CDKN1A(1), CDKN1B(5), CRK(1), CRKL(5), EGF(24), EGFR(20), ELK1(2), ERBB2(6), ERBB3(16), ERBB4(29), EREG(4), GAB1(10), GRB2(3), GSK3B(11), HBEGF(3), JUN(1), MAP2K1(2), MAP2K4(6), MAPK1(2), MAPK10(9), MAPK3(4), MAPK8(7), MAPK9(7), MYC(7), NCK1(4), NCK2(8), NRG1(25), NRG2(6), NRG3(15), PAK1(3), PAK2(6), PAK3(14), PAK4(2), PAK6(3), PAK7(12), PIK3CB(19), PIK3CD(10), PIK3CG(25), PIK3R2(4), PIK3R3(8), PIK3R5(8), PLCG1(12), PLCG2(27), PRKCA(10), PRKCG(10), PTK2(11), RAF1(7), RPS6KB1(3), RPS6KB2(6), SHC1(11), SHC3(9), SHC4(7), SOS1(21), SOS2(22), SRC(2), STAT5A(5), STAT5B(5), TGFA(3) 32592908 658 97 643 165 168 266 92 38 86 8 0.0075 0.095 50 GSK3PATHWAY Bacterial lipopolysaccharide activates AKT to promote the survival and activation of macrophages and inhibits Gsk3-beta to promote beta-catenin accumulation in the nucleus. AKT1, APC, AXIN1, CCND1, CD14, CTNNB1, DVL1, FZD1, GJA1, GNAI1, GSK3B, IRAK1, LBP, LEF1, LY96, MYD88, NFKB1, PDPK1, PIK3CA, PIK3R1, PPP2CA, PRKR, RELA, TIRAP, TLR4, TOLLIP, WNT1 19 AKT1(8), AXIN1(8), CD14(2), FZD1(2), GJA1(6), GNAI1(4), GSK3B(11), IRAK1(5), LBP(4), LEF1(9), LY96(4), MYD88(1), NFKB1(12), PDPK1(3), PPP2CA(6), RELA(6), TIRAP(3), TLR4(14), WNT1(1) 5799574 109 47 104 30 21 46 16 6 20 0 0.0084 0.10 51 NFATPATHWAY Cardiac hypertrophy is induced by NF-ATc4 and GATA4, which are stimulated through calcineurin activated by CaMK. ACTA1, AGT, AKT1, CALM1, CALM2, CALM3, CALR, CAMK1, CAMK1G, CAMK4, CREBBP, CSNK1A1, CTF1, DTR, EDN1, ELSPBP1, F2, FGF2, FKBP1A, GATA4, GSK3B, HAND1, HAND2, HRAS, IGF1, LIF, MAP2K1, MAPK1, MAPK14, MAPK3, MAPK8, MEF2C, MYH2, NFATC1, NFATC2, NFATC3, NFATC4, NKX2-5, NPPA, PIK3CA, PIK3R1, PPP3CA, PPP3CB, PPP3CC, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, RAF1, RPS6KB1, SYT1 47 ACTA1(4), AGT(7), AKT1(8), CALM2(3), CALM3(1), CALR(4), CAMK1(9), CAMK1G(5), CAMK4(5), CREBBP(37), CSNK1A1(5), EDN1(2), ELSPBP1(6), F2(9), GATA4(1), GSK3B(11), HAND1(5), HAND2(2), IGF1(3), LIF(3), MAP2K1(2), MAPK1(2), MAPK14(6), MAPK3(4), MAPK8(7), MEF2C(11), MYH2(37), NFATC2(15), NFATC3(12), NFATC4(8), NPPA(1), PPP3CA(4), PPP3CB(7), PPP3CC(6), PRKACB(2), PRKACG(6), PRKAR1A(4), PRKAR2A(4), PRKAR2B(5), RAF1(7), RPS6KB1(3), SYT1(4) 15514446 287 71 276 92 79 111 38 14 45 0 0.0093 0.11 52 IL6PATHWAY IL-6 binding to its receptor activates JAK kinases and a variety of transcription factors, with effects in neuronal differentiation, bone loss, and inflammation. CEBPB, CSNK2A1, ELK1, FOS, GRB2, HRAS, IL6, IL6R, IL6ST, JAK1, JAK2, JAK3, JUN, MAP2K1, MAPK3, PTPN11, RAF1, SHC1, SOS1, SRF, STAT3 19 CSNK2A1(9), ELK1(2), FOS(6), GRB2(3), IL6(2), IL6R(12), IL6ST(10), JAK2(21), JAK3(9), JUN(1), MAP2K1(2), MAPK3(4), PTPN11(8), RAF1(7), SHC1(11), SOS1(21), SRF(3), STAT3(12) 7381993 143 51 139 29 37 54 19 11 14 8 0.0093 0.11 53 ST_G_ALPHA_I_PATHWAY Gi and Go proteins are members of the same family that transduce cellular signals through both their alpha and beta subunits. AKT1, AKT2, AKT3, ASAH1, BF, BRAF, DAG1, DRD2, EGFR, EPHB2, GRB2, ITPKA, ITPKB, ITPR1, ITPR2, ITPR3, KCNJ3, KCNJ5, KCNJ9, MAPK1, PI3, PIK3CB, PITX2, PLCB1, PLCB2, PLCB3, PLCB4, RAF1, RAP1GA1, RGS20, SHC1, SOS1, SOS2, SRC, STAT3, TERF2IP 32 AKT1(8), AKT2(4), AKT3(8), ASAH1(9), BRAF(12), DAG1(7), DRD2(10), EGFR(20), EPHB2(10), GRB2(3), ITPKB(6), ITPR1(31), ITPR2(38), ITPR3(23), KCNJ3(15), KCNJ5(6), KCNJ9(4), MAPK1(2), PI3(3), PIK3CB(19), PLCB1(6), PLCB2(9), PLCB3(9), PLCB4(20), RAF1(7), RGS20(5), SHC1(11), SOS1(21), SOS2(22), SRC(2), STAT3(12), TERF2IP(4) 20237086 366 78 352 118 91 152 54 16 47 6 0.0096 0.11 54 STRESSPATHWAY Tumor necrosis factor receptor TNFR1 promotes apoptosis and activates the pro-inflammatory NF-kB, while TNFR2 activates stress-activated protein kinases (SAPKs). ATF1, CASP2, CHUK, CRADD, IKBKB, IKBKG, JUN, LTA, MAP2K3, MAP2K4, MAP2K6, MAP3K1, MAP3K14, MAP4K2, MAPK14, MAPK8, NFKB1, NFKBIA, RELA, RIPK1, TANK, TNF, TNFRSF1A, TRADD, TRAF2 22 ATF1(6), CASP2(9), CHUK(11), CRADD(3), IKBKB(15), JUN(1), LTA(3), MAP2K3(8), MAP2K4(6), MAP2K6(9), MAP3K14(12), MAP4K2(6), MAPK14(6), MAPK8(7), NFKB1(12), NFKBIA(3), RELA(6), RIPK1(8), TANK(4), TNF(1), TNFRSF1A(6), TRAF2(5) 7062211 147 48 146 34 22 65 26 13 21 0 0.0099 0.11 55 LONGEVITYPATHWAY Caloric restriction in animals often increases lifespan, which may occur via decreased IGF receptor expression and consequent expression of stress-resistance proteins. AKT1, CAT, FOXO3A, GH1, GHR, HRAS, IGF1, IGF1R, PIK3CA, PIK3R1, SHC1, SOD1, SOD2, SOD3 10 AKT1(8), CAT(5), GH1(6), GHR(10), IGF1(3), IGF1R(13), SHC1(11), SOD1(2), SOD2(3) 3210965 61 35 58 21 9 34 8 5 5 0 0.011 0.12 56 FOSBPATHWAY FOSB gene expression and drug abuse CDK5, FOSB, GRIA2, JUND, PPP1R1B 4 CDK5(1), FOSB(5), GRIA2(25), PPP1R1B(4) 1220573 35 22 32 4 4 13 6 0 12 0 0.011 0.12 57 HDACPATHWAY Myocyte enhancer factor MEF2 activates transcription of genes required for muscle cell differentiation and is inhibited by histone deacetylases. AKT1, AVP, CABIN1, CALM1, CALM2, CALM3, CAMK1, CAMK1G, HDAC5, IGF1, IGF1R, INS, INSR, MAP2K6, MAPK14, MAPK7, MEF2A, MEF2B, MEF2C, MEF2D, MYOD1, NFATC1, NFATC2, PIK3CA, PIK3R1, PPP3CA, PPP3CB, PPP3CC, SYT1, YWHAH 26 AKT1(8), CABIN1(15), CALM2(3), CALM3(1), CAMK1(9), CAMK1G(5), HDAC5(15), IGF1(3), IGF1R(13), INSR(18), MAP2K6(9), MAPK14(6), MAPK7(17), MEF2A(5), MEF2B(3), MEF2C(11), MEF2D(7), MYOD1(3), NFATC2(15), PPP3CA(4), PPP3CB(7), PPP3CC(6), SYT1(4), YWHAH(4) 9956740 191 59 185 66 45 88 22 11 25 0 0.011 0.12 58 CALCINEURIN_NF_AT_SIGNALING Mouse genes associated with signal transduction through calcium, calcineurin, and NF-AT. ACTB, BAD, BCL2, CABIN1, CALM1, CALM2, CALM3, CAMK2B, CAMK4, CD3E, CD3G, CD3Z, CD69, CDKN1A, CEBPB, CNR1, CREBBP, CSF2, CSNK2A1, CSNK2B, CTLA4, EGR2, EGR3, EP300, FCER1A, FCGR3A, FKBP1B, FLJ14639, FOS, FOSL1, GAPD, GATA3, GATA4, GRLF1, GSK3A, GSK3B, HRAS, ICOS, IFNA1, IFNB1, IFNG, IL10, IL13, IL1B, IL2, IL2RA, IL3, IL4, IL6, IL8, IL8RA, ITK, JUNB, KPNA5, KPNB3, MAP2K7, MAPK14, MAPK8, MAPK9, MEF2A, MEF2B, MEF2D, MYF5, NCK2, NFAT5, NFATC1, NFATC2, NFATC3, NFATC4, NFKB2, NFKBIB, NFKBIE, NPPB, NUP214, OPRD1, P2RX7, PAK1, PIN1, PPIA, PPP3CB, PPP3CC, PPP3R1, PTPRC, RELA, RPL13A, SFN, SLA, SP1, SP3, TGFB1, TNF, TNFSF5, TNFSF6, TRAF2, TRPV6, VAV1, VAV2, VAV3, VEGF, XPO5 89 ACTB(5), BAD(2), CABIN1(15), CALM2(3), CALM3(1), CAMK2B(2), CAMK4(5), CD3E(2), CD3G(2), CD69(4), CDKN1A(1), CNR1(8), CREBBP(37), CSNK2A1(9), CTLA4(2), EGR2(8), EGR3(9), EP300(29), FCER1A(6), FCGR3A(2), FKBP1B(1), FOS(6), FOSL1(4), GATA3(4), GATA4(1), GSK3A(9), GSK3B(11), ICOS(2), IFNB1(4), IFNG(5), IL10(4), IL1B(2), IL2(4), IL2RA(3), IL6(2), IL8(3), ITK(10), KPNA5(6), MAPK14(6), MAPK8(7), MAPK9(7), MEF2A(5), MEF2B(3), MEF2D(7), MYF5(4), NCK2(8), NFAT5(13), NFATC2(15), NFATC3(12), NFATC4(8), NFKB2(10), NFKBIB(3), NFKBIE(6), NPPB(2), NUP214(20), OPRD1(2), P2RX7(3), PAK1(3), PIN1(1), PPIA(2), PPP3CB(7), PPP3CC(6), PPP3R1(2), PTPRC(15), RELA(6), SLA(9), SP1(6), SP3(12), TGFB1(4), TNF(1), TRAF2(5), TRPV6(14), VAV1(16), VAV2(5), VAV3(13), XPO5(10) 30824308 511 91 497 172 141 198 65 24 81 2 0.012 0.12 59 GPCRDB_CLASS_A_RHODOPSIN_LIKE ADORA1, ADORA2A, ADORA2B, ADORA3, ADRA1A, ADRA1B, ADRA1D, ADRA2A, ADRA2C, ADRB1, ADRB2, ADRB3, AGTR1, AGTR2, AGTRL1, AVPR1A, AVPR1B, AVPR2, BDKRB1, BDKRB2, BLR1, BRS3, C3AR1, C5R1, CCBP2, CCKAR, CCKBR, CCR1, CCR10, CCR2, CCR3, CCR4, CCR5, CCR6, CCR7, CCR8, CCR9, CCRL1, CCRL2, CHML, CHRM1, CHRM2, CHRM3, CHRM4, CHRM5, CMKLR1, CMKOR1, CNR1, CNR2, CX3CR1, CXCR3, CXCR4, DRD1, DRD2, DRD3, DRD4, DRD5, EDNRA, EDNRB, ELA3A, F2R, F2RL1, F2RL2, F2RL3, FPR1, FPRL1, FPRL2, FSHR, GALR1, GALR2, GALR3, GALT, GHSR, GNB2L1, GPR10, GPR147, GPR17, GPR173, GPR174, GPR23, GPR24, GPR27, GPR3, GPR30, GPR35, GPR37, GPR37L1, GPR4, GPR44, GPR50, GPR6, GPR63, GPR74, GPR77, GPR83, GPR85, GPR87, GPR92, GRPR, HCRTR1, HCRTR2, HRH1, HRH2, HRH3, HTR1A, HTR1B, HTR1D, HTR1E, HTR1F, HTR2A, HTR2B, HTR2C, HTR4, HTR5A, HTR6, HTR7, HTR7, LOC93164, IL8RA, IL8RB, LHCGR, LTB4R, MAS1, MC1R, MC3R, MC4R, MC5R, MLNR, MTNR1A, MTNR1B, NMBR, NMUR1, NMUR2, NPY1R, NPY2R, NPY5R, NPY6R, NTSR1, NTSR2, OPN1SW, OPN3, OPRD1, OPRK1, OPRL1, OPRM1, OR10A5, OR11A1, OR12D3, OR1C1, OR1F1, OR1Q1, OR2H1, OR5V1, OR5V1, OR12D3, OR7A5, OR7C1, OR8B8, OXTR, P2RY1, P2RY10, P2RY11, P2RY12, P2RY13, P2RY14, P2RY2, P2RY5, P2RY6, PPYR1, PTAFR, PTGDR, PTGER1, PTGER2, PTGER4, PTGFR, PTGIR, Rgr, RGR, RHO, RRH, SSTR1, SSTR2, SSTR3, SSTR4, SUCNR1, TBXA2R, TRHR 144 ADORA1(6), ADORA2A(5), ADORA2B(2), ADORA3(5), ADRA1A(11), ADRA1B(7), ADRB1(2), ADRB2(8), AGTR2(8), AVPR1A(8), AVPR1B(3), AVPR2(5), BDKRB1(5), BDKRB2(9), BRS3(13), C3AR1(7), CCBP2(3), CCKAR(12), CCKBR(7), CCR1(5), CCR2(6), CCR3(5), CCR4(5), CCR6(5), CCR7(5), CCR8(6), CCR9(2), CCRL1(4), CCRL2(5), CHML(9), CHRM1(6), CHRM2(9), CHRM3(9), CHRM4(9), CHRM5(13), CMKLR1(11), CNR1(8), CNR2(3), CX3CR1(4), CXCR3(5), CXCR4(1), DRD1(6), DRD2(10), DRD3(5), DRD5(11), EDNRA(6), EDNRB(2), F2R(8), F2RL1(3), F2RL2(3), FPR1(4), FSHR(17), GALR1(2), GALR3(3), GALT(2), GHSR(7), GNB2L1(2), GPR17(4), GPR174(11), GPR3(5), GPR37(9), GPR37L1(5), GPR4(7), GPR50(8), GPR6(4), GPR63(5), GPR77(3), GPR83(5), GPR85(7), GPR87(8), GRPR(4), HCRTR1(1), HCRTR2(8), HRH1(9), HRH2(3), HTR1A(13), HTR1B(6), HTR1D(6), HTR1E(6), HTR2A(15), HTR2B(2), HTR4(7), HTR5A(9), HTR6(4), HTR7(4), LHCGR(16), LTB4R(3), MAS1(2), MC3R(8), MC4R(7), MC5R(12), MLNR(3), MTNR1A(6), MTNR1B(4), NMBR(4), NMUR1(8), NMUR2(7), NPY1R(6), NPY2R(4), NPY5R(10), NTSR1(4), NTSR2(2), OPN1SW(6), OPN3(2), OPRD1(2), OPRK1(9), OPRM1(11), OR10A5(5), OR11A1(3), OR12D3(8), OR1F1(3), OR1Q1(3), OR2H1(2), OR5V1(9), OR7A5(6), OR7C1(10), OR8B8(3), OXTR(4), P2RY1(2), P2RY10(6), P2RY11(7), P2RY12(3), P2RY13(3), P2RY14(5), P2RY2(6), P2RY6(3), PPYR1(7), PTAFR(6), PTGDR(6), PTGER2(5), PTGER4(8), PTGFR(10), PTGIR(3), RGR(6), RHO(8), RRH(3), SSTR2(3), SSTR3(6), SUCNR1(3), TRHR(5) 37910419 836 102 815 303 239 370 126 36 65 0 0.012 0.13 60 FLUMAZENILPATHWAY Flumazenil is a benzodiazepine receptor antagonist that may induce protective preconditioning in ischemic cardiomyocytes. GABRA1, GABRA2, GABRA3, GABRA4, GABRA5, GABRA6, GPX1, PRKCE, SOD1 9 GABRA1(10), GABRA2(12), GABRA3(15), GABRA4(17), GABRA5(8), GABRA6(8), PRKCE(11), SOD1(2) 2802036 83 35 78 32 30 30 9 4 10 0 0.013 0.13 61 TCAPOPTOSISPATHWAY HIV infection upregulates Fas ligand in macrophages and CD4 in helper T cells, leading to widespread Fas-induced T cell apoptosis. CCR5, CD28, CD3D, CD3E, CD3G, CD3Z, CD4, TNFRSF6, TNFSF6, TRA@, TRB@ 5 CD28(6), CD3D(3), CD3E(2), CD3G(2), CD4(8) 907722 21 16 21 6 1 13 1 0 6 0 0.013 0.13 62 ST_WNT_BETA_CATENIN_PATHWAY Beta-catenin is degraded in the absence of Wnt signaling; when extracellular Wnt binds Frizzled receptors, beta-catenin accumulates in the nucleus and may promote cell survival. AKT1, AKT2, AKT3, ANKRD6, APC, AXIN1, AXIN2, C22orf2, CER1, CSNK1A1, CTNNB1, DACT1, DKK1, DKK2, DKK3, DKK4, DVL1, FRAT1, FSTL1, GSK3A, GSK3B, IDAX, LAMR1, LRP1, MVP, NKD1, NKD2, PIN1, PSEN1, PTPRA, SENP2, SFRP1, TSHB, WIF1 26 AKT1(8), AKT2(4), AKT3(8), ANKRD6(14), AXIN1(8), AXIN2(1), CER1(2), CSNK1A1(5), DACT1(14), DKK1(4), DKK2(4), DKK3(3), DKK4(3), FSTL1(3), GSK3A(9), GSK3B(11), LRP1(53), MVP(12), NKD1(4), PIN1(1), PSEN1(4), PTPRA(11), SENP2(11), SFRP1(5), TSHB(3), WIF1(5) 10719150 210 62 201 62 68 85 24 9 24 0 0.013 0.13 63 HSA04920_ADIPOCYTOKINE_SIGNALING_PATHWAY Genes involved in adipocytokine signaling pathway ACACB, ACSL1, ACSL3, ACSL4, ACSL5, ACSL6, ADIPOQ, ADIPOR1, ADIPOR2, AGRP, AKT1, AKT2, AKT3, CAMKK1, CAMKK2, CD36, CHUK, CPT1A, CPT1B, CPT1C, CPT2, FRAP1, G6PC, G6PC2, IKBKB, IKBKG, IRS1, IRS2, IRS4, JAK1, JAK2, JAK3, LEP, LEPR, MAPK10, MAPK8, MAPK9, NFKB1, NFKB2, NFKBIA, NFKBIB, NFKBIE, NPY, PCK1, PCK2, POMC, PPARA, PPARGC1A, PRKAA1, PRKAA2, PRKAB1, PRKAB2, PRKAG1, PRKAG2, PRKAG3, PRKCQ, PTPN11, RELA, RXRA, RXRB, RXRG, SLC2A1, SLC2A4, SOCS3, STAT3, STK11, TNF, TNFRSF1A, TNFRSF1B, TRADD, TRAF2, TYK2 65 ACACB(31), ACSL1(13), ACSL3(10), ACSL5(18), ACSL6(13), ADIPOQ(3), ADIPOR1(2), ADIPOR2(9), AGRP(2), AKT1(8), AKT2(4), AKT3(8), CAMKK1(8), CAMKK2(6), CD36(7), CHUK(11), CPT1A(10), CPT1C(15), CPT2(7), G6PC(6), G6PC2(9), IKBKB(15), IRS1(17), IRS4(20), JAK2(21), JAK3(9), LEP(2), LEPR(15), MAPK10(9), MAPK8(7), MAPK9(7), NFKB1(12), NFKB2(10), NFKBIA(3), NFKBIB(3), NFKBIE(6), NPY(2), PCK1(15), PCK2(7), POMC(2), PPARA(2), PPARGC1A(13), PRKAA1(6), PRKAA2(9), PRKAB1(7), PRKAB2(2), PRKAG1(2), PRKAG2(4), PRKAG3(6), PRKCQ(13), PTPN11(8), RELA(6), RXRA(1), RXRG(10), SLC2A1(6), SLC2A4(4), STAT3(12), TNF(1), TNFRSF1A(6), TNFRSF1B(3), TRAF2(5), TYK2(7) 26702514 515 93 501 164 114 231 75 24 61 10 0.014 0.13 64 GPCRDB_CLASS_C_METABOTROPIC_GLUTAMATE_PHEROMONE CASR, GABBR1, GPCR5A, GPR51, GPRC5A, GPRC5B, GPRC5C, GPRC5D, GRM1, GRM2, GRM3, GRM4, GRM5, GRM7, GRM8 13 CASR(21), GABBR1(17), GPRC5A(5), GPRC5B(8), GPRC5C(4), GPRC5D(4), GRM1(22), GRM2(7), GRM3(20), GRM4(16), GRM5(22), GRM7(15), GRM8(24) 7183145 185 52 179 57 63 55 32 7 26 2 0.014 0.13 65 IGF1MTORPATHWAY Growth factor IGF-1 activates AKT, Gsk3-beta, and mTOR to promote muscle hypertrophy. AKT1, EIF2B5, EIF2S1, EIF2S2, EIF2S3, EIF4E, EIF4EBP1, FRAP1, GSK3B, IGF1, IGF1R, INPPL1, PDK2, PDPK1, PIK3CA, PIK3R1, PPP2CA, PTEN, RPS6, RPS6KB1 15 AKT1(8), EIF2B5(6), EIF2S1(1), EIF2S2(5), EIF2S3(6), EIF4E(4), GSK3B(11), IGF1(3), IGF1R(13), PDK2(5), PDPK1(3), PPP2CA(6), RPS6(6), RPS6KB1(3) 4523075 80 40 76 27 18 37 8 4 13 0 0.014 0.13 66 STEMPATHWAY In the absence of infection, bone marrow stromal cells release hematopoietic cytokines; activated macrophages and Th cells induce hematopoiesis during infection. CD4, CD8A, CSF1, CSF2, CSF3, EPO, IL11, IL2, IL3, IL4, IL5, IL6, IL7, IL8, IL9 14 CD4(8), CD8A(3), CSF1(5), CSF3(1), EPO(2), IL2(4), IL5(2), IL6(2), IL7(2), IL8(3) 2125427 32 25 32 12 12 10 4 0 6 0 0.014 0.13 67 HBXPATHWAY Hbx is a hepatitis B protein that activates a number of transcription factors, possibly by inducing calcium release from the mitochondrion to the cytoplasm. CREB1, GRB2, HBXIP, HRAS, PTK2B, SHC1, SOS1, SRC 8 CREB1(5), GRB2(3), HBXIP(1), PTK2B(16), SHC1(11), SOS1(21), SRC(2) 2976267 59 33 57 15 15 28 6 4 4 2 0.015 0.13 68 TOLLPATHWAY Toll-like receptors are activated by bacterial lipoproteins, lipopolysaccharides, and other surface molecules, and activate pro-inflammatory factors such as NF-kB. CD14, CHUK, ELK1, FOS, IKBKB, IKBKG, IRAK1, JUN, LY96, MAP2K3, MAP2K4, MAP2K6, MAP3K1, MAP3K14, MAP3K7, MAP3K7IP1, MAP3K7IP2, MAPK14, MAPK8, MYD88, NFKB1, NFKBIA, PGLYRP, PPARA, PRKR, RELA, SITPEC, TIRAP, TLR10, TLR2, TLR3, TLR4, TLR6, TLR7, TLR9, TOLLIP, TRAF6 29 CD14(2), CHUK(11), ELK1(2), FOS(6), IKBKB(15), IRAK1(5), JUN(1), LY96(4), MAP2K3(8), MAP2K4(6), MAP2K6(9), MAP3K14(12), MAP3K7(8), MAPK14(6), MAPK8(7), MYD88(1), NFKB1(12), NFKBIA(3), PPARA(2), RELA(6), TIRAP(3), TLR10(19), TLR2(12), TLR3(6), TLR4(14), TLR6(10), TLR7(15), TLR9(7), TRAF6(4) 11527687 216 61 214 57 47 85 40 15 27 2 0.015 0.14 69 PELP1PATHWAY Pelp1 acts downstream of activated estrogen receptor to promote cell proliferation and is overexpressed in many breast tumors. CREBBP, EP300, ESR1, MAPK1, MAPK3, PELP1, SRC 6 CREBBP(37), EP300(29), MAPK1(2), MAPK3(4), PELP1(13), SRC(2) 4587366 87 40 85 24 23 33 11 4 16 0 0.016 0.14 70 INFLAMPATHWAY Interleukins and TNF serve as signals to coordinate the inflammatory response, in which macrophages recruit and activate neutrophils, fibroblasts, and T cells. CD4, CSF1, CSF2, CSF3, HLA-DRA, HLA-DRB1, IFNA1, IFNB1, IFNG, IL10, IL11, IL12A, IL12B, IL13, IL15, IL1A, IL2, IL3, IL4, IL5, IL6, IL7, IL8, LTA, PDGFA, TGFB1, TGFB2, TGFB3, TNF 27 CD4(8), CSF1(5), CSF3(1), HLA-DRB1(1), IFNB1(4), IFNG(5), IL10(4), IL12A(7), IL12B(3), IL15(1), IL1A(1), IL2(4), IL5(2), IL6(2), IL7(2), IL8(3), LTA(3), TGFB1(4), TGFB2(6), TGFB3(9), TNF(1) 4610788 76 39 74 27 23 34 10 1 8 0 0.016 0.14 71 PLCPATHWAY Phospholipase C hydrolyzes the membrane lipid PIP2 to DAG, which activates protein kinase C, and IP3, which causes calcium influx. AKT1, PIK3CA, PIK3R1, PLCB1, PLCG1, PRKCA, PRKCB1, VAV1 5 AKT1(8), PLCB1(6), PLCG1(12), PRKCA(10), VAV1(16) 3203795 52 34 45 25 12 20 7 4 7 2 0.017 0.14 72 SIG_CD40PATHWAYMAP Genes related to CD40 signaling DUSP1, GORASP1, IKBKG, MAP2K4, MAP2K7, MAPK1, MAPK10, MAPK11, MAPK12, MAPK13, MAPK14, MAPK3, MAPK8, MAPK8IP1, MAPK8IP2, MAPK8IP3, MAPK9, MAPKAPK5, NFKB1, NFKB2, NFKBIA, NFKBIB, NFKBIE, NFKBIL1, NFKBIL2, PIK3CA, PIK3CD, PIK3R1, SYT1, TNFRSF5, TRAF2, TRAF3, TRAF5, TRAF6 25 DUSP1(2), GORASP1(7), MAP2K4(6), MAPK1(2), MAPK10(9), MAPK13(2), MAPK14(6), MAPK3(4), MAPK8(7), MAPK8IP1(5), MAPK9(7), MAPKAPK5(6), NFKB1(12), NFKB2(10), NFKBIA(3), NFKBIB(3), NFKBIE(6), NFKBIL1(2), PIK3CD(10), SYT1(4), TRAF2(5), TRAF3(6), TRAF5(8), TRAF6(4) 8308118 136 54 135 35 34 58 16 4 22 2 0.017 0.14 73 HSA04664_FC_EPSILON_RI_SIGNALING_PATHWAY Genes involved in Fc epsilon RI signaling pathway AKT1, AKT2, AKT3, BTK, CSF2, FCER1A, FCER1G, FYN, GAB2, GRB2, HRAS, IL13, IL3, IL4, IL5, INPP5D, KRAS, LAT, LCP2, LYN, MAP2K1, MAP2K2, MAP2K3, MAP2K4, MAP2K6, MAP2K7, MAPK1, MAPK10, MAPK11, MAPK12, MAPK13, MAPK14, MAPK3, MAPK8, MAPK9, MS4A2, NRAS, PDK1, PIK3CA, PIK3CB, PIK3CD, PIK3CG, PIK3R1, PIK3R2, PIK3R3, PIK3R5, PLA2G10, PLA2G12A, PLA2G12B, PLA2G1B, PLA2G2A, PLA2G2D, PLA2G2E, PLA2G2F, PLA2G3, PLA2G4A, PLA2G5, PLA2G6, PLCG1, PLCG2, PRKCA, PRKCB1, PRKCD, PRKCE, RAC1, RAC2, RAC3, RAF1, SOS1, SOS2, SYK, TNF, VAV1, VAV2, VAV3 65 AKT1(8), AKT2(4), AKT3(8), BTK(11), FCER1A(6), FCER1G(1), FYN(7), GAB2(12), GRB2(3), IL5(2), INPP5D(14), LCP2(7), LYN(7), MAP2K1(2), MAP2K3(8), MAP2K4(6), MAP2K6(9), MAPK1(2), MAPK10(9), MAPK13(2), MAPK14(6), MAPK3(4), MAPK8(7), MAPK9(7), MS4A2(4), PDK1(7), PIK3CB(19), PIK3CD(10), PIK3CG(25), PIK3R2(4), PIK3R3(8), PIK3R5(8), PLA2G10(1), PLA2G12A(1), PLA2G12B(3), PLA2G1B(1), PLA2G2D(2), PLA2G2E(3), PLA2G2F(3), PLA2G3(5), PLA2G4A(11), PLA2G5(2), PLA2G6(6), PLCG1(12), PLCG2(27), PRKCA(10), PRKCD(7), PRKCE(11), RAC2(2), RAF1(7), SOS1(21), SOS2(22), SYK(6), TNF(1), VAV1(16), VAV2(5), VAV3(13) 21904350 435 86 421 131 112 167 60 25 63 8 0.017 0.15 74 HSA04060_CYTOKINE_CYTOKINE_RECEPTOR_INTERACTION Genes involved in cytokine-cytokine receptor interaction ACVR1, ACVR1B, ACVR2A, ACVR2B, AMH, AMHR2, BMP2, BMP7, BMPR1A, BMPR1B, BMPR2, CCL1, CCL11, CCL13, CCL14, CCL15, CCL16, CCL17, CCL18, CCL19, CCL2, CCL20, CCL21, CCL22, CCL23, CCL24, CCL25, CCL26, CCL27, CCL28, CCL3, CCL4, CCL5, CCL7, CCL8, CCR1, CCR2, CCR3, CCR4, CCR5, CCR6, CCR7, CCR8, CCR9, CD27, CD40, CD40LG, CD70, CLCF1, CNTF, CNTFR, CRLF2, CSF1, CSF1R, CSF2, CSF2RA, CSF2RB, CSF3, CSF3R, CTF1, CX3CL1, CX3CR1, CXCL1, CXCL10, CXCL11, CXCL12, CXCL13, CXCL14, CXCL16, CXCL2, CXCL3, CXCL5, CXCL6, CXCL9, CXCR3, CXCR4, CXCR6, EDA, EDA2R, EDAR, EGF, EGFR, EPO, EPOR, FAS, FASLG, FLJ78302, FLT1, FLT3, FLT3LG, FLT4, GDF5, GH1, GH2, GHR, HGF, IFNA1, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA2, IFNA21, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, IFNAR1, IFNAR2, IFNB1, IFNE1, IFNG, IFNGR1, IFNGR2, IFNK, IFNW1, IL10, IL10RA, IL10RB, IL11, IL11RA, IL12A, IL12B, IL12RB1, IL12RB2, IL13, IL13RA1, IL15, IL15RA, IL17A, IL17B, IL17RA, IL17RB, IL18, IL18R1, IL18RAP, IL19, IL1A, IL1B, IL1R1, IL1R2, IL1RAP, IL2, IL20, IL20RA, IL21, IL21R, IL22, IL22RA1, IL22RA2, IL23A, IL23R, IL24, IL25, IL26, IL28A, IL28B, IL28RA, IL29, IL2RA, IL2RB, IL2RG, IL3, IL3RA, IL4, IL4R, IL5, IL5RA, IL6, IL6R, IL6ST, IL7, IL7R, IL8, IL8RA, IL8RB, IL9, IL9R, INHBA, INHBB, INHBC, INHBE, KDR, KIT, KITLG, LEP, LEPR, LIF, LIFR, LOC728045, LTA, LTB, LTBR, MET, MPL, NGFR, OSM, OSMR, PDGFB, PDGFC, PDGFRA, PDGFRB, PF4, PF4V1, PLEKHO2, PPBP, PRL, PRLR, RELT, TGFB1, TGFB2, TGFB3, TGFBR1, TGFBR2, TNF, TNFRSF10A, TNFRSF10B, TNFRSF10C, TNFRSF10D, TNFRSF11A, TNFRSF11B, TNFRSF12A, TNFRSF13B, TNFRSF13C, TNFRSF14, TNFRSF17, TNFRSF18, TNFRSF19, TNFRSF1A, TNFRSF1B, TNFRSF21, TNFRSF25, TNFRSF4, TNFRSF6B, TNFRSF8, TNFRSF9, TNFSF10, TNFSF11, TNFSF12, TNFSF13, TNFSF13B, TNFSF14, TNFSF15, TNFSF18, TNFSF4, TNFSF8, TNFSF9, TPO, TSLP, VEGFA, VEGFB, VEGFC, XCL1, XCL2, XCR1 240 ACVR1(9), ACVR1B(6), ACVR2B(8), AMHR2(4), BMP2(5), BMPR1A(8), BMPR1B(6), BMPR2(14), CCL1(1), CCL13(2), CCL14(1), CCL15(2), CCL16(1), CCL17(1), CCL18(2), CCL23(3), CCL24(3), CCL25(1), CCL28(4), CCL3(1), CCL4(1), CCL5(4), CCL7(4), CCR1(5), CCR2(6), CCR3(5), CCR4(5), CCR6(5), CCR7(5), CCR8(6), CCR9(2), CD27(2), CD40(4), CD40LG(7), CD70(2), CLCF1(2), CNTF(3), CNTFR(2), CSF1(5), CSF1R(7), CSF2RA(9), CSF2RB(11), CSF3(1), CSF3R(11), CX3CL1(4), CX3CR1(4), CXCL1(1), CXCL10(2), CXCL11(1), CXCL12(3), CXCL13(2), CXCL14(1), CXCL16(3), CXCL2(2), CXCL3(1), CXCL5(3), CXCL6(1), CXCL9(2), CXCR3(5), CXCR4(1), CXCR6(3), EDA(7), EDA2R(9), EGF(24), EGFR(20), EPO(2), EPOR(4), FAS(7), FASLG(6), FLT1(23), FLT3(9), FLT3LG(4), FLT4(10), GDF5(8), GH1(6), GH2(5), GHR(10), HGF(15), IFNA10(2), IFNA13(3), IFNA14(3), IFNA16(2), IFNA17(2), IFNA2(1), IFNA21(2), IFNA4(3), IFNA5(2), IFNA6(6), IFNA7(2), IFNA8(2), IFNAR1(9), IFNAR2(8), IFNB1(4), IFNG(5), IFNGR1(6), IFNGR2(4), IFNK(2), IFNW1(2), IL10(4), IL10RA(7), IL10RB(9), IL11RA(7), IL12A(7), IL12B(3), IL12RB1(16), IL12RB2(11), IL13RA1(14), IL15(1), IL15RA(3), IL17RA(10), IL17RB(5), IL18(1), IL18R1(5), IL18RAP(12), IL19(1), IL1A(1), IL1B(2), IL1R1(5), IL1R2(7), IL1RAP(2), IL2(4), IL20(6), IL20RA(3), IL21(2), IL21R(6), IL22RA1(2), IL22RA2(1), IL23A(4), IL23R(8), IL24(7), IL25(2), IL26(7), IL28A(2), IL28B(4), IL28RA(8), IL29(2), IL2RA(3), IL2RB(6), IL2RG(11), IL3RA(11), IL4R(6), IL5(2), IL5RA(9), IL6(2), IL6R(12), IL6ST(10), IL7(2), IL7R(9), IL8(3), INHBA(7), INHBB(3), INHBC(4), INHBE(7), KDR(23), KIT(28), KITLG(2), LEP(2), LEPR(15), LIF(3), LIFR(22), LTA(3), LTB(1), LTBR(7), MET(10), MPL(5), NGFR(4), OSM(3), OSMR(12), PDGFB(4), PDGFC(4), PDGFRA(29), PDGFRB(12), PF4(1), PF4V1(1), PLEKHO2(3), PRL(6), PRLR(6), RELT(1), TGFB1(4), TGFB2(6), TGFB3(9), TGFBR1(8), TGFBR2(6), TNF(1), TNFRSF10A(3), TNFRSF10B(5), TNFRSF10C(3), TNFRSF10D(10), TNFRSF11A(6), TNFRSF11B(6), TNFRSF13B(4), TNFRSF14(2), TNFRSF17(2), TNFRSF19(3), TNFRSF1A(6), TNFRSF1B(3), TNFRSF21(3), TNFRSF25(1), TNFRSF8(8), TNFRSF9(3), TNFSF10(1), TNFSF11(6), TNFSF12(4), TNFSF13B(3), TNFSF14(6), TNFSF15(3), TNFSF18(3), TNFSF4(5), TNFSF8(1), TPO(18), TSLP(2), VEGFA(1), VEGFB(2), VEGFC(7), XCL1(1), XCL2(1), XCR1(7) 59567882 1162 114 1136 359 330 451 162 63 152 4 0.018 0.15 75 CREBPATHWAY CREB is a transcription factor that binds to cAMP-responsive elements (CREs) to activate transcription in response to extracellular signaling. ADCY1, AKT1, CAMK2A, CAMK2B, CAMK2D, CAMK2G, CREB1, GNAS, GRB2, HRAS, MAPK1, MAPK14, MAPK3, PIK3CA, PIK3R1, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, PRKCA, PRKCB1, RAC1, RPS6KA1, RPS6KA5, SOS1 23 ADCY1(17), AKT1(8), CAMK2A(8), CAMK2B(2), CAMK2D(7), CAMK2G(8), CREB1(5), GNAS(25), GRB2(3), MAPK1(2), MAPK14(6), MAPK3(4), PRKACB(2), PRKACG(6), PRKAR1A(4), PRKAR2A(4), PRKAR2B(5), PRKCA(10), RPS6KA1(5), RPS6KA5(7), SOS1(21) 8129107 159 52 149 40 34 70 17 12 24 2 0.020 0.16 76 IGF1PATHWAY Growth factor IGF-1 stimulates growth and inhibits apoptosis by activating the MAP kinase pathway in a variety of cell types. CSNK2A1, ELK1, FOS, GRB2, HRAS, IGF1, IGF1R, IRS1, JUN, MAP2K1, MAPK3, MAPK8, PIK3CA, PIK3R1, PTPN11, RAF1, RASA1, SHC1, SOS1, SRF 17 CSNK2A1(9), ELK1(2), FOS(6), GRB2(3), IGF1(3), IGF1R(13), IRS1(17), JUN(1), MAP2K1(2), MAPK3(4), MAPK8(7), PTPN11(8), RAF1(7), SHC1(11), SOS1(21), SRF(3) 6528285 117 48 114 29 33 48 15 8 11 2 0.021 0.17 77 AT1RPATHWAY Binding of angiotensin II to AT1-R activates Ca2+ signaling and the JNK pathway. AGT, AGTR1, ATF2, CALM1, CALM2, CALM3, EGFR, ELK1, GNAQ, GRB2, HRAS, JUN, MAP2K1, MAP2K2, MAP2K4, MAP3K1, MAPK1, MAPK3, MAPK8, MEF2A, MEF2B, MEF2C, MEF2D, PAK1, PRKCA, PRKCB1, PTK2, PTK2B, RAC1, RAF1, SHC1, SOS1, SRC, SYT1 31 AGT(7), ATF2(6), CALM2(3), CALM3(1), EGFR(20), ELK1(2), GRB2(3), JUN(1), MAP2K1(2), MAP2K4(6), MAPK1(2), MAPK3(4), MAPK8(7), MEF2A(5), MEF2B(3), MEF2C(11), MEF2D(7), PAK1(3), PRKCA(10), PTK2(11), PTK2B(16), RAF1(7), SHC1(11), SOS1(21), SRC(2), SYT1(4) 10570731 175 58 171 62 43 69 24 12 25 2 0.021 0.17 78 NO1PATHWAY Shear stress in endothelial cells increases cytoplasmic calcium, which activates nitric oxide synthase III to release NO, which in turn regulates cardiac contractions. ACTA1, AKT1, BDK, BDKRB2, CALM1, CALM2, CALM3, CAV1, CHRM1, CHRNA1, FLT1, FLT4, HSPCA, KDR, NOS3, PDE2A, PDE3A, PDE3B, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, PRKG1, PRKG2, RYR2, SLC7A1, SYT1, TNNI1, VEGF 27 ACTA1(4), AKT1(8), BDKRB2(9), CALM2(3), CALM3(1), CHRM1(6), CHRNA1(6), FLT1(23), FLT4(10), KDR(23), NOS3(11), PDE2A(14), PDE3A(17), PDE3B(15), PRKACB(2), PRKACG(6), PRKAR1A(4), PRKAR2A(4), PRKAR2B(5), PRKG1(9), PRKG2(10), RYR2(111), SLC7A1(6), SYT1(4), TNNI1(1) 13283381 312 63 302 103 75 133 42 15 38 9 0.022 0.17 79 STILBENE_COUMARINE_AND_LIGNIN_BIOSYNTHESIS EPX, GBA3, LPO, MPO, PRDX1, PRDX2, PRDX5, PRDX6, TPO, TYR 10 EPX(14), GBA3(9), LPO(6), MPO(9), PRDX1(1), PRDX2(4), PRDX5(3), PRDX6(2), TPO(18), TYR(10) 3243469 76 36 75 23 27 31 10 1 7 0 0.023 0.18 80 PLK3PATHWAY Active Plk3 phosphorylates CDC25c, blocking the G2/M transition, and phosphorylates p53 to induce apoptosis. ATM, ATR, CDC25C, CHEK1, CHEK2, CNK, TP53, YWHAH 5 ATR(38), CDC25C(8), CHEK1(4), CHEK2(14), YWHAH(4) 3186587 68 33 65 7 9 22 9 7 19 2 0.023 0.18 81 HSA04120_UBIQUITIN_MEDIATED_PROTEOLYSIS Genes involved in ubiquitin mediated proteolysis ANAPC1, ANAPC10, ANAPC11, ANAPC2, ANAPC4, ANAPC5, ANAPC7, BTRC, CDC16, CDC20, CDC23, CDC26, CDC27, CUL1, CUL2, CUL3, FBXW11, FBXW7, FZR1, ITCH, LOC728919, RBX1, SKP1, SKP2, SMURF1, SMURF2, TCEB1, TCEB2, UBA1, UBE2C, UBE2D1, UBE2D2, UBE2D3, UBE2D4, UBE2E1, UBE2E2, UBE2E3, VHL, WWP1, WWP2 37 ANAPC1(30), ANAPC10(2), ANAPC2(6), ANAPC4(5), ANAPC5(12), ANAPC7(3), BTRC(13), CDC16(1), CDC20(5), CDC23(4), CDC27(22), CUL1(12), CUL2(7), CUL3(18), FBXW11(5), ITCH(8), RBX1(1), SKP1(2), SKP2(6), SMURF1(10), SMURF2(4), TCEB1(2), UBA1(20), UBE2C(1), UBE2D2(3), UBE2D3(3), UBE2D4(1), UBE2E1(3), UBE2E2(3), UBE2E3(8), VHL(2), WWP1(18), WWP2(7) 13369421 247 66 241 51 49 106 40 24 28 0 0.024 0.18 82 PURINE_METABOLISM 1_Sep, ADA, ADCY1, ADCY2, ADCY3, ADCY4, ADCY5, ADCY6, ADCY7, ADCY8, ADK, ADSL, ADSS, AK1, AK2, AK5, ALLC, AMPD1, AMPD2, AMPD3, APRT, ATIC, ATP1B1, ATP5A1, ATP5B, ATP5C1, ATP5D, ATP5F1, ATP5G1, ATP5G2, ATP5G3, ATP5H, ATP5I, ATP5J, ATP5J2, CANT1, DCK, DGUOK, ECGF1, ENPP1, ENPP3, ENTPD1, ENTPD2, FHIT, GART, GDA, GMPS, GUCY1A2, GUCY1A3, GUCY1B2, GUCY1B3, GUCY2C, GUCY2D, GUCY2F, GUK1, HPRT1, IMPDH1, IMPDH2, ITPA, NME1, NME2, NP, NPR1, NPR2, NT5C, NT5E, NT5M, NUDT2, PAICS, PAPSS1, PAPSS2, PDE1A, PDE4A, PDE4B, PDE4C, PDE4D, PDE5A, PDE6B, PDE6C, PDE6G, PDE7B, PDE8A, PDE9A, PFAS, PKLR, PKM2, POLA, POLB, POLD1, POLD2, POLE, POLG, POLL, POLQ, POLR1B, POLR2A, POLR2B, POLR2C, POLR2D, POLR2E, POLR2F, POLR2G, POLR2H, POLR2I, POLR2J, POLR2K, POLR2L, POLRMT, POLS, PPAT, PRPS1, PRPS1L1, PRPS2, PRUNE, RRM1, RRM2, SAC 106 ADA(3), ADCY1(17), ADCY2(17), ADCY3(8), ADCY4(8), ADCY5(11), ADCY6(16), ADCY7(6), ADCY8(16), ADK(1), ADSL(7), ADSS(8), AK1(2), AK2(4), AK5(6), ALLC(10), AMPD1(21), AMPD2(9), AMPD3(4), ATIC(9), ATP1B1(3), ATP5A1(11), ATP5B(4), ATP5C1(1), ATP5F1(5), ATP5G1(4), ATP5G2(1), ATP5I(1), ATP5J(4), CANT1(5), DCK(4), DGUOK(3), ENPP1(11), ENPP3(16), ENTPD1(6), FHIT(2), GART(8), GDA(5), GMPS(13), GUCY1A2(10), GUCY1A3(12), GUCY1B3(7), GUCY2C(12), GUCY2D(7), GUCY2F(25), GUK1(6), HPRT1(2), IMPDH1(5), IMPDH2(10), ITPA(1), NPR1(14), NPR2(16), NT5C(1), NT5E(6), NT5M(4), NUDT2(3), PAICS(4), PAPSS1(6), PAPSS2(6), PDE1A(12), PDE4A(12), PDE4B(17), PDE4C(6), PDE4D(7), PDE5A(14), PDE6B(6), PDE6C(14), PDE7B(4), PDE8A(7), PDE9A(10), PFAS(10), PKLR(10), PKM2(5), POLB(4), POLD1(15), POLD2(6), POLE(1), POLG(7), POLL(8), POLQ(23), POLR1B(16), POLR2A(25), POLR2B(20), POLR2C(5), POLR2D(3), POLR2E(1), POLR2F(2), POLR2H(3), POLR2K(2), PPAT(10), PRPS1(3), PRPS1L1(5), PRPS2(10), PRUNE(4), RRM1(4), RRM2(5) 42966703 763 100 751 225 195 326 98 46 96 2 0.024 0.18 83 CHONDROITIN B3GAT3, B4GALT7, HS3ST1, HS3ST2, HS3ST3A1, HS3ST3B1, XYLT1, XYLT2 7 B3GAT3(4), B4GALT7(4), HS3ST1(5), HS3ST2(4), HS3ST3A1(3), XYLT1(15), XYLT2(9) 2082646 44 27 43 16 14 19 5 1 5 0 0.025 0.19 84 HEPARAN_SULFATE_BIOSYNTHESIS B3GAT3, B4GALT7, HS3ST1, HS3ST2, HS3ST3A1, HS3ST3B1, XYLT1, XYLT2 7 B3GAT3(4), B4GALT7(4), HS3ST1(5), HS3ST2(4), HS3ST3A1(3), XYLT1(15), XYLT2(9) 2082646 44 27 43 16 14 19 5 1 5 0 0.025 0.19 85 IL2PATHWAY IL-2 promotes proliferation via JAK and MAP kinase and has surface receptors on activated B cells, LPS-treated monocytes, and many T cells. CSNK2A1, ELK1, FOS, GRB2, HRAS, IL2, IL2RA, IL2RB, IL2RG, JAK1, JAK3, JUN, LCK, MAP2K1, MAPK3, MAPK8, RAF1, SHC1, SOS1, STAT5A, STAT5B, SYK 21 CSNK2A1(9), ELK1(2), FOS(6), GRB2(3), IL2(4), IL2RA(3), IL2RB(6), IL2RG(11), JAK3(9), JUN(1), LCK(5), MAP2K1(2), MAPK3(4), MAPK8(7), RAF1(7), SHC1(11), SOS1(21), STAT5A(5), STAT5B(5), SYK(6) 7259864 127 49 124 24 41 52 12 8 12 2 0.028 0.20 86 ST_DIFFERENTIATION_PATHWAY_IN_PC12_CELLS Rat-derived PC12 cells respond to nerve growth factor (NGF) and PACAP to differentiate into neuronal cells. AKT1, ASAH1, ATF1, BRAF, CAMP, CREB1, CREB3, CREB5, CREBBP, CRKL, DAG1, EGR1, EGR2, EGR3, EGR4, ELK1, FRS2, GAS, GNAQ, GRF2, JUN, MAP1B, MAP2K4, MAP2K7, MAPK1, MAPK10, MAPK3, MAPK8, MAPK8IP1, MAPK8IP2, MAPK8IP3, MAPK9, NTRK1, OPN1LW, PACAP, PIK3C2G, PIK3CA, PIK3CD, PIK3R1, PTPN11, RPS6KA3, SH2B, SHC1, SRC, TERF2IP, TH, TUBA3 35 AKT1(8), ASAH1(9), ATF1(6), BRAF(12), CAMP(1), CREB1(5), CREB3(2), CREB5(6), CREBBP(37), CRKL(5), DAG1(7), EGR1(8), EGR2(8), EGR3(9), ELK1(2), FRS2(7), JUN(1), MAP1B(42), MAP2K4(6), MAPK1(2), MAPK10(9), MAPK3(4), MAPK8(7), MAPK8IP1(5), MAPK9(7), NTRK1(11), OPN1LW(4), PIK3C2G(22), PIK3CD(10), PTPN11(8), RPS6KA3(17), SHC1(11), SRC(2), TERF2IP(4) 14722161 304 66 296 95 84 123 35 14 41 7 0.029 0.21 87 HSA04110_CELL_CYCLE Genes involved in cell cycle ABL1, ANAPC1, ANAPC10, ANAPC11, ANAPC2, ANAPC4, ANAPC5, ANAPC7, ATM, ATR, BUB1, BUB1B, BUB3, CCNA1, CCNA2, CCNB1, CCNB2, CCNB3, CCND1, CCND2, CCND3, CCNE1, CCNE2, CCNH, CDC14A, CDC14B, CDC16, CDC2, CDC20, CDC23, CDC25A, CDC25B, CDC25C, CDC26, CDC27, CDC45L, CDC6, CDC7, CDK2, CDK4, CDK6, CDK7, CDKN1A, CDKN1B, CDKN1C, CDKN2A, CDKN2B, CDKN2C, CDKN2D, CHEK1, CHEK2, CREBBP, CUL1, DBF4, E2F1, E2F2, E2F3, EP300, ESPL1, FZR1, GADD45A, GADD45B, GADD45G, GSK3B, hCG_1982709, HDAC1, HDAC2, LOC440917, LOC728919, MAD1L1, MAD2L1, MAD2L2, MCM2, MCM3, MCM4, MCM5, MCM6, MCM7, MDM2, ORC1L, ORC2L, ORC3L, ORC4L, ORC5L, ORC6L, PCNA, PKMYT1, PLK1, PRKDC, PTTG1, PTTG2, RB1, RBL1, RBL2, RBX1, SFN, SKP1, SKP2, SMAD2, SMAD3, SMAD4, SMC1A, SMC1B, TFDP1, TGFB1, TGFB2, TGFB3, TP53, WEE1, YWHAB, YWHAE, YWHAG, YWHAH, YWHAQ, YWHAZ 99 ABL1(9), ANAPC1(30), ANAPC10(2), ANAPC2(6), ANAPC4(5), ANAPC5(12), ANAPC7(3), ATR(38), BUB1(9), BUB1B(6), BUB3(5), CCNA1(4), CCNA2(3), CCNB1(8), CCNB2(4), CCNB3(20), CCND2(7), CCND3(5), CCNE2(6), CCNH(3), CDC14A(8), CDC14B(6), CDC16(1), CDC20(5), CDC23(4), CDC25A(9), CDC25B(3), CDC25C(8), CDC27(22), CDC6(3), CDC7(13), CDK2(5), CDK4(4), CDK6(3), CDK7(6), CDKN1A(1), CDKN1B(5), CDKN2A(1), CDKN2C(3), CDKN2D(3), CHEK1(4), CHEK2(14), CREBBP(37), CUL1(12), DBF4(11), E2F2(1), E2F3(5), EP300(29), ESPL1(10), GSK3B(11), HDAC1(4), HDAC2(5), MAD1L1(15), MAD2L1(5), MAD2L2(3), MCM2(10), MCM3(9), MCM4(9), MCM5(12), MCM6(9), MCM7(5), MDM2(6), PCNA(3), PLK1(6), PRKDC(70), PTTG1(5), PTTG2(1), RBL1(17), RBL2(21), RBX1(1), SKP1(2), SKP2(6), SMAD2(12), SMAD3(4), SMAD4(5), SMC1A(19), SMC1B(22), TGFB1(4), TGFB2(6), TGFB3(9), WEE1(1), YWHAB(1), YWHAE(1), YWHAG(3), YWHAH(4), YWHAQ(3), YWHAZ(1) 43724094 751 104 726 170 174 316 96 45 104 16 0.029 0.21 88 HSA00232_CAFFEINE_METABOLISM Genes involved in caffeine metabolism CYP1A2, CYP2A13, CYP2A6, CYP2A7, NAT1, NAT2, XDH 7 CYP1A2(6), CYP2A13(7), CYP2A6(11), CYP2A7(5), NAT1(10), NAT2(3), XDH(10) 2863937 52 32 48 21 18 25 5 1 3 0 0.030 0.21 89 EIF4PATHWAY The eIF-4F complex recognizes 5' mRNA caps, recruits RNA helicases, and maintains mRNA-ribosome bridging. AKT1, EIF4A1, EIF4A2, EIF4E, EIF4EBP1, EIF4G1, EIF4G2, EIF4G3, FRAP1, GHR, IRS1, MAPK1, MAPK14, MAPK3, MKNK1, PABPC1, PDK2, PDPK1, PIK3CA, PIK3R1, PRKCA, PRKCB1, PTEN, RPS6KB1 19 AKT1(8), EIF4A1(4), EIF4A2(6), EIF4E(4), EIF4G1(15), EIF4G2(8), EIF4G3(26), GHR(10), IRS1(17), MAPK1(2), MAPK14(6), MAPK3(4), MKNK1(6), PABPC1(11), PDK2(5), PDPK1(3), PRKCA(10), RPS6KB1(3) 8263425 148 50 145 35 32 62 22 10 22 0 0.030 0.21 90 ST_GAQ_PATHWAY G-alpha-q activates phospholipase C, resulting in calcium influx and increasing protein kinase C activity. ADRBK1, AKT1, AKT2, AKT3, BF, DAG1, GNAQ, IKBKG, ITPKA, ITPKB, ITPR1, ITPR2, ITPR3, NFKB1, NFKB2, NFKBIA, NFKBIB, NFKBIE, NFKBIL1, NFKBIL2, PDK1, PHKA2, PIK3CB, PITX2, PLD1, PLD2, PLD3, VN1R1 24 ADRBK1(3), AKT1(8), AKT2(4), AKT3(8), DAG1(7), ITPKB(6), ITPR1(31), ITPR2(38), ITPR3(23), NFKB1(12), NFKB2(10), NFKBIA(3), NFKBIB(3), NFKBIE(6), NFKBIL1(2), PDK1(7), PHKA2(15), PIK3CB(19), PLD1(16), PLD2(7), PLD3(3), VN1R1(5) 15004181 236 65 229 76 61 104 27 9 33 2 0.031 0.21 91 HSA04210_APOPTOSIS Genes involved in apoptosis AIFM1, AKT1, AKT2, AKT3, APAF1, ATM, BAD, BAX, BCL2, BCL2L1, BID, BIRC2, BIRC3, BIRC4, CAPN1, CAPN2, CASP10, CASP3, CASP6, CASP7, CASP8, CASP9, CFLAR, CHP, CHUK, CSF2RB, CYCS, DFFA, DFFB, ENDOG, FADD, FAS, FASLG, IKBKB, IKBKG, IL1A, IL1B, IL1R1, IL1RAP, IL3, IL3RA, IRAK1, IRAK2, IRAK3, IRAK4, MAP3K14, MYD88, NFKB1, NFKB2, NFKBIA, NGFB, NTRK1, PIK3CA, PIK3CB, PIK3CD, PIK3CG, PIK3R1, PIK3R2, PIK3R3, PIK3R5, PPP3CA, PPP3CB, PPP3CC, PPP3R1, PPP3R2, PRKACA, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, RELA, RIPK1, TNF, TNFRSF10A, TNFRSF10B, TNFRSF10C, TNFRSF10D, TNFRSF1A, TNFSF10, TP53, TRADD, TRAF2 73 AIFM1(12), AKT1(8), AKT2(4), AKT3(8), APAF1(19), BAD(2), BAX(4), BCL2L1(3), BID(3), BIRC2(13), BIRC3(3), CAPN1(4), CAPN2(6), CASP10(10), CASP3(4), CASP6(4), CASP7(4), CASP9(3), CFLAR(7), CHUK(11), CSF2RB(11), CYCS(3), DFFA(1), DFFB(3), FADD(1), FAS(7), FASLG(6), IKBKB(15), IL1A(1), IL1B(2), IL1R1(5), IL1RAP(2), IL3RA(11), IRAK1(5), IRAK2(7), IRAK3(13), IRAK4(6), MAP3K14(12), MYD88(1), NFKB1(12), NFKB2(10), NFKBIA(3), NTRK1(11), PIK3CB(19), PIK3CD(10), PIK3CG(25), PIK3R2(4), PIK3R3(8), PIK3R5(8), PPP3CA(4), PPP3CB(7), PPP3CC(6), PPP3R1(2), PPP3R2(1), PRKACA(4), PRKACB(2), PRKACG(6), PRKAR1A(4), PRKAR2A(4), PRKAR2B(5), RELA(6), RIPK1(8), TNF(1), TNFRSF10A(3), TNFRSF10B(5), TNFRSF10C(3), TNFRSF10D(10), TNFRSF1A(6), TNFSF10(1), TRAF2(5) 23576155 447 82 434 144 99 190 58 30 70 0 0.032 0.21 92 HSA00950_ALKALOID_BIOSYNTHESIS_I Genes involved in alkaloid biosynthesis I DDC, GOT1, GOT2, TAT, TYR 5 DDC(11), GOT1(6), GOT2(5), TAT(9), TYR(10) 1635238 41 24 40 5 8 17 7 3 6 0 0.035 0.23 93 HSA04670_LEUKOCYTE_TRANSENDOTHELIAL_MIGRATION Genes involved in Leukocyte transendothelial migration ACTN1, ACTN2, ACTN3, ACTN4, ARHGAP5, BCAR1, CD99, CDC42, CDH5, CLDN1, CLDN10, CLDN11, CLDN14, CLDN15, CLDN16, CLDN17, CLDN18, CLDN19, CLDN2, CLDN20, CLDN22, CLDN23, CLDN3, CLDN4, CLDN5, CLDN6, CLDN7, CLDN8, CLDN9, CTNNA1, CTNNA2, CTNNA3, CTNNB1, CTNND1, CXCL12, CXCR4, CYBA, CYBB, ESAM, EZR, F11R, GNAI1, GNAI2, GNAI3, GRLF1, ICAM1, ITGA4, ITGAL, ITGAM, ITGB1, ITGB2, ITK, JAM2, JAM3, MAPK11, MAPK12, MAPK13, MAPK14, MLLT4, MMP2, MMP9, MRCL3, MRLC2, MSN, MYL2, MYL5, MYL7, MYL8P, MYL9, MYLC2PL, MYLPF, NCF1, NCF2, NCF4, NOX1, NOX3, OCLN, PECAM1, PIK3CA, PIK3CB, PIK3CD, PIK3CG, PIK3R1, PIK3R2, PIK3R3, PIK3R5, PLCG1, PLCG2, PRKCA, PRKCB1, PRKCG, PTK2, PTK2B, PTPN11, PXN, RAC1, RAC2, RAP1A, RAP1B, RAPGEF3, RAPGEF4, RASSF5, RHOA, RHOH, ROCK1, ROCK2, SIPA1, THY1, TXK, VASP, VAV1, VAV2, VAV3, VCAM1, VCL 100 ACTN1(13), ACTN2(9), ACTN3(10), ACTN4(11), ARHGAP5(24), CD99(2), CDC42(5), CDH5(9), CLDN1(2), CLDN10(9), CLDN11(1), CLDN15(4), CLDN16(6), CLDN17(2), CLDN18(4), CLDN19(2), CLDN2(4), CLDN20(4), CLDN22(3), CLDN6(1), CLDN7(1), CLDN8(5), CLDN9(2), CTNNA1(18), CTNNA2(13), CTNNA3(13), CTNND1(22), CXCL12(3), CXCR4(1), CYBB(12), ESAM(1), EZR(6), F11R(2), GNAI1(4), GNAI2(7), GNAI3(3), ICAM1(3), ITGA4(12), ITGAL(13), ITGAM(24), ITGB1(12), ITGB2(14), ITK(10), JAM2(9), JAM3(3), MAPK13(2), MAPK14(6), MLLT4(32), MMP2(11), MMP9(14), MSN(15), MYL2(1), MYL5(3), MYL7(4), MYL9(3), MYLPF(2), NCF1(5), NCF2(6), NCF4(8), NOX1(11), NOX3(5), OCLN(5), PIK3CB(19), PIK3CD(10), PIK3CG(25), PIK3R2(4), PIK3R3(8), PIK3R5(8), PLCG1(12), PLCG2(27), PRKCA(10), PRKCG(10), PTK2(11), PTK2B(16), PTPN11(8), PXN(6), RAC2(2), RAP1A(3), RAP1B(2), RAPGEF3(11), RAPGEF4(10), RASSF5(3), RHOA(4), RHOH(2), ROCK1(27), ROCK2(15), SIPA1(3), THY1(1), TXK(6), VASP(2), VAV1(16), VAV2(5), VAV3(13), VCAM1(9), VCL(14) 39838910 793 105 773 263 221 313 96 38 115 10 0.036 0.23 94 PHENYLALANINE_METABOLISM ABP1, ALDH1A3, ALDH3A1, ALDH3B1, ALDH3B2, AOC2, AOC3, DDC, EPX, GOT1, GOT2, HPD, LPO, MAOA, MAOB, MPO, PRDX1, PRDX2, PRDX5, PRDX6, TAT, TPO 22 ABP1(12), ALDH3A1(6), ALDH3B1(5), ALDH3B2(8), AOC2(6), AOC3(14), DDC(11), EPX(14), GOT1(6), GOT2(5), HPD(7), LPO(6), MAOA(14), MAOB(7), MPO(9), PRDX1(1), PRDX2(4), PRDX5(3), PRDX6(2), TAT(9), TPO(18) 7537821 167 50 162 51 48 66 23 8 22 0 0.036 0.23 95 PDGFPATHWAY Platelet-derived growth factor (PDGF) receptor is phosphorylated on ligand binding and promotes cell proliferation. CSNK2A1, ELK1, FOS, GRB2, HRAS, JAK1, JUN, MAP2K1, MAP2K4, MAP3K1, MAPK3, MAPK8, PDGFA, PDGFRA, PIK3CA, PIK3R1, PLCG1, PRKCA, PRKCB1, RAF1, RASA1, SHC1, SOS1, SRF, STAT1, STAT3, STAT5A 20 CSNK2A1(9), ELK1(2), FOS(6), GRB2(3), JUN(1), MAP2K1(2), MAP2K4(6), MAPK3(4), MAPK8(7), PDGFRA(29), PLCG1(12), PRKCA(10), RAF1(7), SHC1(11), SOS1(21), SRF(3), STAT1(14), STAT3(12), STAT5A(5) 8218254 164 52 156 36 46 62 24 10 18 4 0.036 0.23 96 GAMMA_HEXACHLOROCYCLOHEXANE_DEGRADATION ACP1, ACP2, ACP5, ACPP, ACPT, ALPI, ALPL, ALPP, ALPP, ALPPL2, ALPPL2, CYP19A1, CYP1A1, CYP1A2, CYP2A6, CYP2A6, CYP2A7, CYP2A7P1, CYP2A13, CYP2B6, CYP2C18, CYP2C19, CYP2C19, CYP2C9, CYP2C8, CYP2C9, CYP2D6, CYP2E1, CYP2F1, CYP2J2, CYP3A4, CYP3A5, CYP3A7, CYP4B1, CYP4F8, CYP51A1, PON1 31 ACP1(4), ACP2(2), ACP5(4), ACPP(5), ACPT(7), ALPI(3), ALPL(3), ALPP(4), ALPPL2(5), CYP19A1(12), CYP1A1(9), CYP1A2(6), CYP2A13(7), CYP2A6(11), CYP2A7(5), CYP2B6(11), CYP2C18(5), CYP2C19(7), CYP2C8(4), CYP2C9(5), CYP2D6(2), CYP2E1(5), CYP2F1(5), CYP2J2(5), CYP3A4(14), CYP3A5(7), CYP3A7(9), CYP4B1(4), CYP4F8(9), CYP51A1(4), PON1(12) 10164909 195 55 190 60 57 74 31 11 20 2 0.039 0.25 97 SA_B_CELL_RECEPTOR_COMPLEXES Antigen binding to B cell receptors activates protein tyrosine kinases, such as the Src family, which ultimate activate MAP kinases. ATF2, BCR, BLNK, ELK1, FOS, GRB2, HRAS, JUN, LYN, MAP2K1, MAP3K1, MAPK1, MAPK3, MAPK8IP3, PAPPA, RAC1, RPS6KA1, RPS6KA3, SHC1, SOS1, SYK, VAV1, VAV2, VAV3 22 ATF2(6), BCR(6), BLNK(4), ELK1(2), FOS(6), GRB2(3), JUN(1), LYN(7), MAP2K1(2), MAPK1(2), MAPK3(4), PAPPA(32), RPS6KA1(5), RPS6KA3(17), SHC1(11), SOS1(21), SYK(6), VAV1(16), VAV2(5), VAV3(13) 8945770 169 54 163 52 50 61 25 7 22 4 0.039 0.25 98 HSA04340_HEDGEHOG_SIGNALING_PATHWAY Genes involved in Hedgehog signaling pathway BMP2, BMP4, BMP5, BMP6, BMP7, BMP8A, BMP8B, BTRC, CSNK1A1, CSNK1A1L, CSNK1D, CSNK1E, CSNK1G1, CSNK1G2, CSNK1G3, DHH, FBXW11, GAS1, GLI1, GLI2, GLI3, GSK3B, HHIP, IHH, LRP2, PRKACA, PRKACB, PRKACG, PRKX, PRKY, PTCH1, PTCH2, RAB23, SHH, SMO, STK36, SUFU, WNT1, WNT10A, WNT10B, WNT11, WNT16, WNT2, WNT2B, WNT3, WNT3A, WNT4, WNT5A, WNT5B, WNT6, WNT7A, WNT7B, WNT8A, WNT8B, WNT9A, WNT9B, ZIC2 52 BMP2(5), BMP4(7), BMP6(6), BMP8A(3), BMP8B(1), BTRC(13), CSNK1A1(5), CSNK1A1L(4), CSNK1E(10), CSNK1G1(8), CSNK1G3(11), DHH(2), FBXW11(5), GLI1(12), GLI2(11), GLI3(21), GSK3B(11), HHIP(12), IHH(3), LRP2(72), PRKACA(4), PRKACB(2), PRKACG(6), PRKX(4), PTCH1(23), PTCH2(21), RAB23(4), SHH(7), SMO(6), STK36(11), SUFU(7), WNT1(1), WNT10A(4), WNT10B(1), WNT11(4), WNT16(6), WNT2(4), WNT2B(9), WNT3(5), WNT4(4), WNT5A(9), WNT5B(4), WNT7A(2), WNT7B(1), WNT8A(1), WNT8B(4), WNT9A(1), WNT9B(1), ZIC2(1) 19434285 379 75 367 129 119 149 46 13 50 2 0.040 0.25 99 ST_ERK1_ERK2_MAPK_PATHWAY The Erk1 and Erk2 MAP kinase pathways are regulated by Raf, Mos, and Tpl-2. ARAF1, ATF1, BAD, BRAF, COPEB, CREB1, CREB3, CREB5, DUSP4, DUSP6, DUSP9, EEF2K, EIF4E, GRB2, HTATIP, MAP2K1, MAP2K2, MAP3K8, MAPK1, MAPK3, MKNK1, MKNK2, MOS, NFKB1, RAP1A, RPS6KA1, RPS6KA2, RPS6KA3, SHC1, SOS1, SOS2, TRAF3 28 ATF1(6), BAD(2), BRAF(12), CREB1(5), CREB3(2), CREB5(6), DUSP4(1), DUSP6(1), DUSP9(8), EEF2K(11), EIF4E(4), GRB2(3), MAP2K1(2), MAP3K8(12), MAPK1(2), MAPK3(4), MKNK1(6), MKNK2(4), MOS(8), NFKB1(12), RAP1A(3), RPS6KA1(5), RPS6KA2(16), RPS6KA3(17), SHC1(11), SOS1(21), SOS2(22), TRAF3(6) 9970363 212 59 204 48 42 91 32 12 31 4 0.040 0.25 100 HSA01430_CELL_COMMUNICATION Genes involved in cell communication ACTB, ACTG1, CHAD, COL11A1, COL11A2, COL17A1, COL1A1, COL1A2, COL2A1, COL3A1, COL4A1, COL4A2, COL4A4, COL4A6, COL5A1, COL5A2, COL5A3, COL6A1, COL6A2, COL6A3, COL6A6, COMP, DES, DSC1, DSC2, DSC3, DSG1, DSG2, DSG3, DSG4, FN1, GJA1, GJA10, GJA3, GJA4, GJA5, GJA8, GJA9, GJB1, GJB2, GJB3, GJB4, GJB5, GJB6, GJB7, GJC1, GJC2, GJC3, GJD2, GJD3, GJD4, IBSP, INA, ITGA6, ITGB4, KRT1, KRT10, KRT12, KRT13, KRT14, KRT15, KRT16, KRT17, KRT18, KRT19, KRT2, KRT20, KRT23, KRT24, KRT25, KRT27, KRT28, KRT3, KRT31, KRT32, KRT33A, KRT33B, KRT34, KRT35, KRT36, KRT37, KRT38, KRT39, KRT4, KRT40, KRT5, KRT6A, KRT6B, KRT6C, KRT7, KRT71, KRT72, KRT73, KRT74, KRT75, KRT76, KRT77, KRT78, KRT79, KRT8, KRT81, KRT82, KRT83, KRT84, KRT85, KRT86, KRT9, LAMA1, LAMA2, LAMA3, LAMA4, LAMA5, LAMB1, LAMB2, LAMB3, LAMB4, LAMC1, LAMC2, LAMC3, LMNA, LMNB1, LMNB2, LOC728760, NES, PRPH, RELN, SPP1, THBS1, THBS2, THBS3, THBS4, TNC, TNN, TNR, TNXB, VIM, VTN, VWF 122 ACTB(5), CHAD(3), COL11A1(36), COL11A2(13), COL17A1(24), COL1A1(12), COL1A2(22), COL2A1(14), COL3A1(18), COL4A1(23), COL4A2(11), COL4A4(24), COL4A6(35), COL5A2(24), COL5A3(23), COL6A3(54), COL6A6(38), COMP(7), DES(5), DSC2(17), DSG2(8), DSG4(18), FN1(39), GJA1(6), GJA10(7), GJA4(2), GJA8(6), GJA9(12), GJB1(1), GJB2(3), GJB3(2), GJB4(5), GJB5(3), GJB6(4), GJB7(8), GJC1(2), GJC3(4), GJD2(8), GJD4(3), IBSP(6), INA(2), ITGA6(12), ITGB4(12), KRT1(8), KRT10(1), KRT12(7), KRT13(9), KRT14(3), KRT15(10), KRT16(8), KRT17(4), KRT19(4), KRT2(9), KRT20(4), KRT23(9), KRT24(5), KRT25(6), KRT27(7), KRT28(5), KRT3(9), KRT31(12), KRT32(9), KRT33A(7), KRT33B(4), KRT34(9), KRT35(7), KRT36(7), KRT37(7), KRT38(9), KRT4(10), KRT5(6), KRT6A(5), KRT6B(10), KRT6C(6), KRT7(1), KRT71(5), KRT72(7), KRT73(4), KRT74(3), KRT75(7), KRT76(10), KRT77(4), KRT78(4), KRT79(5), KRT8(4), KRT81(5), KRT82(5), KRT83(3), KRT84(9), KRT85(5), KRT86(1), KRT9(13), LAMA1(39), LAMA2(62), LAMA3(35), LAMA4(22), LAMB1(22), LAMB2(27), LAMB3(16), LAMB4(27), LAMC1(17), LAMC2(12), LAMC3(13), LMNA(8), LMNB1(5), PRPH(2), RELN(48), SPP1(3), THBS1(12), THBS2(22), THBS3(6), THBS4(9), TNC(19), TNN(16), TNR(16), TNXB(25), VIM(8), VWF(31) 76149463 1414 121 1384 458 409 589 182 65 138 31 0.041 0.25 101 GABAPATHWAY Gamma-aminobutyric acid (GABA) is an inhibitory neurotransmitter whose receptor is regulated by Plic-1, gephyrin, and GABARAP, which promote receptor clustering. DNM1, GABARAP, GABRA1, GABRA2, GABRA3, GABRA4, GABRA5, GABRA6, GPHN, NSF, SRC, UBQLN1 12 DNM1(5), GABARAP(2), GABRA1(10), GABRA2(12), GABRA3(15), GABRA4(17), GABRA5(8), GABRA6(8), GPHN(13), NSF(3), SRC(2), UBQLN1(8) 4203532 103 40 97 33 31 41 12 6 13 0 0.041 0.25 102 NGFPATHWAY Nerve growth factor (NGF) stimulates neural survival and proliferation via the TrkA and p75 receptors, which induce DAG and IP3 production and activate Ras. CSNK2A1, DPM2, ELK1, FOS, GRB2, HRAS, JUN, KLK2, MAP2K1, MAPK3, MAPK8, NGFB, NGFR, PIK3CA, PIK3R1, PLCG1, RAF1, SHC1, SOS1 16 CSNK2A1(9), DPM2(4), ELK1(2), FOS(6), GRB2(3), JUN(1), KLK2(2), MAP2K1(2), MAPK3(4), MAPK8(7), NGFR(4), PLCG1(12), RAF1(7), SHC1(11), SOS1(21) 5272579 95 42 90 17 30 35 11 6 11 2 0.041 0.25 103 THELPERPATHWAY Helper T cells coordinate the actions of B cells, macrophages, and other immune cells via surface molecules such as T cell receptor/CD3 and their characteristic marker CD4. CD2, CD28, CD3D, CD3E, CD3G, CD3Z, CD4, ICAM1, ITGAL, ITGB2, PTPRC, THY1, TRA@, TRB@ 11 CD2(4), CD28(6), CD3D(3), CD3E(2), CD3G(2), CD4(8), ICAM1(3), ITGAL(13), ITGB2(14), PTPRC(15), THY1(1) 3855787 71 36 70 29 14 38 7 2 10 0 0.042 0.25 104 IL18PATHWAY Pro-inflammatory IL-18 is activated in macrophages by caspase-1 cleavage and, in conjunction with IL-12, stimulates Th1 cell differentiation. CASP1, IFNG, IL12A, IL12B, IL18, IL2 6 CASP1(7), IFNG(5), IL12A(7), IL12B(3), IL18(1), IL2(4) 1094142 27 20 26 7 9 8 5 2 3 0 0.043 0.25 105 GLEEVECPATHWAY The drug Gleevec specifically targets the abnormal bcr-abl protein, an apoptosis inhibitor present in chronic myeloid leukemia. AKT1, BCL2, BCR, CRKL, FOS, GRB2, HRAS, JAK2, JUN, MAP2K1, MAP2K4, MAP3K1, MAPK3, MAPK8, MYC, PIK3CA, PIK3R1, RAF1, SOS1, STAT1, STAT5A, STAT5B 19 AKT1(8), BCR(6), CRKL(5), FOS(6), GRB2(3), JAK2(21), JUN(1), MAP2K1(2), MAP2K4(6), MAPK3(4), MAPK8(7), MYC(7), RAF1(7), SOS1(21), STAT1(14), STAT5A(5), STAT5B(5) 7198202 128 48 121 29 32 50 21 7 10 8 0.044 0.25 106 SIG_PIP3_SIGNALING_IN_CARDIAC_MYOCTES Genes related to PIP3 signaling in cardiac myocytes AKT1, AKT2, AKT3, BAD, BCL2L1, CDC42, CDK2, CDKN1B, CDKN2A, CREB1, CREB3, CREB5, EBP, ERBB4, F2RL2, FOXO3A, FRAP1, GAB1, GADD45A, GRB2, GSK3A, GSK3B, IFI27, IGF1, IGFBP1, INPPL1, IRS1, IRS2, IRS4, MET, MYC, NOLC1, P101-PI3K, PAK1, PAK2, PAK3, PAK4, PAK6, PAK7, PARD3, PARD6A, PDK1, PIK3CA, PIK3CD, PPP1R13B, PREX1, PSCD3, PTEN, PTK2, PTPN1, RPS6KA1, RPS6KA2, RPS6KA3, RPS6KB1, SFN, SHC1, SLC2A4, SOS1, SOS2, TSC1, TSC2, YWHAB, YWHAE, YWHAG, YWHAH, YWHAQ, YWHAZ 59 AKT1(8), AKT2(4), AKT3(8), BAD(2), BCL2L1(3), CDC42(5), CDK2(5), CDKN1B(5), CDKN2A(1), CREB1(5), CREB3(2), CREB5(6), ERBB4(29), F2RL2(3), GAB1(10), GRB2(3), GSK3A(9), GSK3B(11), IFI27(1), IGF1(3), IGFBP1(5), IRS1(17), IRS4(20), MET(10), MYC(7), NOLC1(10), PAK1(3), PAK2(6), PAK3(14), PAK4(2), PAK6(3), PAK7(12), PARD3(27), PARD6A(1), PDK1(7), PIK3CD(10), PPP1R13B(7), PREX1(25), PTK2(11), PTPN1(4), RPS6KA1(5), RPS6KA2(16), RPS6KA3(17), RPS6KB1(3), SHC1(11), SLC2A4(4), SOS1(21), SOS2(22), TSC1(13), TSC2(14), YWHAB(1), YWHAE(1), YWHAG(3), YWHAH(4), YWHAQ(3), YWHAZ(1) 23670799 463 82 446 121 97 198 74 27 63 4 0.044 0.25 107 PYK2PATHWAY Pyk2 and Rac1 stimulate the JNK cascade and activate MKK3, which activates p38. BCAR1, CALM1, CALM2, CALM3, CRKL, GNAQ, GRB2, HRAS, JUN, MAP2K1, MAP2K2, MAP2K3, MAP2K4, MAP3K1, MAPK1, MAPK14, MAPK3, MAPK8, PAK1, PLCG1, PRKCA, PRKCB1, PTK2B, RAC1, RAF1, SHC1, SOS1, SRC, SYT1 25 CALM2(3), CALM3(1), CRKL(5), GRB2(3), JUN(1), MAP2K1(2), MAP2K3(8), MAP2K4(6), MAPK1(2), MAPK14(6), MAPK3(4), MAPK8(7), PAK1(3), PLCG1(12), PRKCA(10), PTK2B(16), RAF1(7), SHC1(11), SOS1(21), SRC(2), SYT1(4) 8210128 134 52 130 45 34 50 19 11 18 2 0.045 0.25 108 GPCRDB_OTHER ADORA3, ALG6, C5R1, CCKBR, CCR2, CCR3, CCR5, CELSR1, CELSR2, CELSR3, CHRM2, CHRM3, CIDEB, CXCR3, DRD4, EBI2, EDG1, EDNRA, ELA3A, EMR2, EMR3, F2R, FSHR, FY, GHRHR, GNRHR, GPR, GPR116, GPR132, GPR133, GPR135, GPR143, GPR145, GPR17, GPR18, GPR55, GPR56, GPR61, GPR73L1, GPR77, GPR84, GPR88, GRCA, GRM1, GRPR, HRH4, IL8RA, IL8RB, LGR6, LGR7, LPHN2, LPHN3, LTB4R2, MASS1, NTSR1, OR2A9P, OR2M4, OR5E1P, OR7E19P, OR7E47P, OR7E37P, OR7E18P, OR7E35P, LOC441453, OR8G1, LOC442754, OR8G2, P2RY11, P2RY13, PTGFR, RLN3R1, SMO, SSTR2, TAAR5, TSHR, VN1R1 47 ADORA3(5), ALG6(5), CCKBR(7), CCR2(6), CCR3(5), CELSR2(30), CELSR3(23), CHRM2(9), CHRM3(9), CIDEB(3), CXCR3(5), EDNRA(6), EMR2(5), EMR3(8), F2R(8), FSHR(17), GHRHR(2), GNRHR(4), GPR116(20), GPR132(8), GPR133(11), GPR17(4), GPR18(2), GPR55(4), GPR56(3), GPR61(7), GPR77(3), GPR84(6), GRM1(22), GRPR(4), HRH4(4), LGR6(18), LPHN2(30), LPHN3(29), LTB4R2(3), NTSR1(4), OR8G1(1), OR8G2(6), P2RY11(7), P2RY13(3), PTGFR(10), SMO(6), SSTR2(3), TAAR5(8), TSHR(12), VN1R1(5) 20044213 400 79 395 120 118 156 56 26 42 2 0.045 0.25 109 AKTPATHWAY Second messenger PIP3 promotes cell survival by activating the anti-apoptotic kinase AKT. AKT1, BAD, CASP9, CHUK, FOXO1A, FOXO3A, GH1, GHR, HSPCA, MLLT7, NFKB1, NFKBIA, PDPK1, PIK3CA, PIK3R1, PPP2CA, RELA, TNFSF6, YWHAH 12 AKT1(8), BAD(2), CASP9(3), CHUK(11), GH1(6), GHR(10), NFKB1(12), NFKBIA(3), PDPK1(3), PPP2CA(6), RELA(6), YWHAH(4) 3684663 74 33 71 8 12 34 15 5 8 0 0.045 0.25 110 HSA00940_PHENYLPROPANOID_BIOSYNTHESIS Genes involved in phenylpropanoid biosynthesis EPX, GBA, GBA3, LPO, MPO, PRDX6, TPO 7 EPX(14), GBA(4), GBA3(9), LPO(6), MPO(9), PRDX6(2), TPO(18) 2853182 62 34 61 20 25 21 7 2 7 0 0.045 0.25 111 HSA01032_GLYCAN_STRUCTURES_DEGRADATION Genes involved in degradation of glycan structures AGA, ARSB, FLJ21865, FUCA1, FUCA2, GALNS, GBA, GLB1, GNS, GUSB, HEXA, HEXB, HGSNAT, HPSE, HPSE2, HYAL1, HYAL2, IDS, IDUA, LCT, MAN2B1, MAN2B2, MAN2C1, MANBA, NAGLU, NEU1, NEU2, NEU3, NEU4, SPAM1 27 AGA(4), ARSB(6), FUCA1(3), FUCA2(3), GBA(4), GLB1(9), GNS(2), GUSB(5), HEXA(3), HEXB(4), HGSNAT(9), HPSE(4), HPSE2(5), HYAL1(4), HYAL2(1), IDS(6), LCT(30), MAN2B1(20), MAN2B2(9), MAN2C1(8), MANBA(14), NAGLU(3), NEU2(5), NEU3(3), SPAM1(12) 11375922 176 58 171 72 49 79 21 11 16 0 0.045 0.25 112 LAIRPATHWAY The local acute inflammatory response is mediated by activated macrophages and mast cells or by complement activation. BDK, C3, C5, C6, C7, ICAM1, IL1A, IL6, IL8, ITGA4, ITGAL, ITGB1, ITGB2, SELP, SELPLG, TNF, VCAM1 16 C3(24), C5(20), C6(23), C7(21), ICAM1(3), IL1A(1), IL6(2), IL8(3), ITGA4(12), ITGAL(13), ITGB1(12), ITGB2(14), SELP(15), SELPLG(11), TNF(1), VCAM1(9) 8463946 184 52 176 47 44 82 19 9 26 4 0.046 0.25 113 PAR1PATHWAY Activated extracellular thrombin cleaves and activates the G-protein coupled receptors PAR1 and PAR4, which activate platelets. ADCY1, ARHA, ARHGEF1, F2, F2R, F2RL3, GNA12, GNA13, GNAI1, GNAQ, GNB1, GNGT1, MAP3K7, PIK3CA, PIK3R1, PLCB1, PPP1R12B, PRKCA, PRKCB1, PTK2B, ROCK1 16 ADCY1(17), ARHGEF1(11), F2(9), F2R(8), GNA12(10), GNA13(9), GNAI1(4), GNB1(3), MAP3K7(8), PLCB1(6), PPP1R12B(18), PRKCA(10), PTK2B(16), ROCK1(27) 7453215 156 50 153 40 48 57 20 10 15 6 0.046 0.25 114 ALANINE_AND_ASPARTATE_METABOLISM AARS, ABAT, ADSL, ADSS, AGXT, AGXT2, ASL, ASNS, ASPA, ASS, CAD, CRAT, DARS, DDO, GAD1, GAD2, GOT1, GOT2, GPT, GPT2, NARS, PC 20 AARS(10), ABAT(9), ADSL(7), ADSS(8), AGXT(5), AGXT2(9), ASL(4), ASNS(9), ASPA(5), CAD(38), CRAT(3), DARS(4), DDO(9), GAD1(8), GAD2(12), GOT1(6), GOT2(5), GPT2(7), NARS(7), PC(8) 8647259 173 56 171 51 40 77 26 5 25 0 0.047 0.25 115 TRANSLATION_FACTORS ANKHD1, ANKHD1, MASK_BP3, EEF1A2, EEF1B2, EEF1D, EEF1G, EEF2, EEF2K, EIF1AX, EIF1AY, EIF2AK1, EIF2AK2, EIF2AK3, EIF2B1, EIF2B2, EIF2B3, EIF2B4, EIF2B5, EIF2S1, EIF2S2, EIF2S3, EIF3S1, EIF3S10, EIF3S2, EIF3S3, EIF3S4, EIF3S5, EIF3S6, EIF3S7, EIF3S8, EIF3S9, EIF4A1, EIF4A2, EIF4E, EIF4EBP1, EIF4EBP2, EIF4G1, EIF4G3, EIF5, EIF5A, EIF5B, ETF1, GSPT2, ITGB4BP, KIAA0664, PABPC1, PABPC3, PABPC1, LOC341315, PAIP1, PAIP1, LOC388345, SLC35A4, SUI1, WBSCR1 34 ANKHD1(3), EEF1B2(3), EEF1D(9), EEF1G(4), EEF2(8), EEF2K(11), EIF1AX(4), EIF2AK1(12), EIF2AK2(16), EIF2AK3(14), EIF2B1(1), EIF2B2(4), EIF2B3(8), EIF2B4(5), EIF2B5(6), EIF2S1(1), EIF2S2(5), EIF2S3(6), EIF4A1(4), EIF4A2(6), EIF4E(4), EIF4EBP2(1), EIF4G1(15), EIF4G3(26), EIF5(3), EIF5A(7), EIF5B(17), ETF1(5), GSPT2(14), PABPC1(11), PABPC3(13), PAIP1(4), SLC35A4(4) 14070408 254 70 248 54 68 100 35 11 36 4 0.047 0.25 116 HSA00562_INOSITOL_PHOSPHATE_METABOLISM Genes involved in inositol phosphate metabolism CARKL, FN3K, IMPA1, IMPA2, INPP1, INPP4A, INPP4B, INPP5A, INPP5B, INPP5E, INPPL1, IPMK, ISYNA1, ITGB1BP3, ITPK1, ITPKA, ITPKB, MINPP1, MIOX, OCRL, PI4KA, PI4KB, PIB5PA, PIK3C3, PIK3CA, PIK3CB, PIK3CD, PIK3CG, PIP4K2A, PIP4K2B, PIP4K2C, PIP5K1A, PIP5K1B, PIP5K1C, PIP5K3, PLCB1, PLCB2, PLCB3, PLCB4, PLCD1, PLCD3, PLCD4, PLCE1, PLCG1, PLCG2, PLCZ1, PTEN, PTPMT1, SKIP, SYNJ1, SYNJ2 40 IMPA1(4), IMPA2(6), INPP1(2), INPP4B(17), INPP5A(6), INPP5B(8), IPMK(7), ITGB1BP3(1), ITPK1(2), ITPKB(6), MINPP1(5), OCRL(20), PI4KA(18), PI4KB(12), PIK3C3(11), PIK3CB(19), PIK3CD(10), PIK3CG(25), PIP4K2A(4), PIP4K2B(9), PIP4K2C(4), PIP5K1A(7), PIP5K1B(6), PIP5K1C(5), PLCB1(6), PLCB2(9), PLCB3(9), PLCB4(20), PLCD1(5), PLCD3(7), PLCD4(13), PLCE1(36), PLCG1(12), PLCG2(27), PLCZ1(16), PTPMT1(1), SYNJ1(27), SYNJ2(13) 21833606 415 80 404 134 113 155 63 24 58 2 0.048 0.26 117 ERKPATHWAY Cell growth is promoted by Ras activation of the anti-apoptotic p44/42 MAP kinase pathway. DPM2, EGFR, ELK1, GNAS, GNB1, GNGT1, GRB2, HRAS, IGF1R, ITGB1, KLK2, MAP2K1, MAP2K2, MAPK1, MAPK3, MKNK1, MKNK2, MYC, NGFB, NGFR, PDGFRA, PPP2CA, PTPRR, RAF1, RPS6KA1, RPS6KA5, SHC1, SOS1, SRC, STAT3 28 DPM2(4), EGFR(20), ELK1(2), GNAS(25), GNB1(3), GRB2(3), IGF1R(13), ITGB1(12), KLK2(2), MAP2K1(2), MAPK1(2), MAPK3(4), MKNK1(6), MKNK2(4), MYC(7), NGFR(4), PDGFRA(29), PPP2CA(6), PTPRR(18), RAF1(7), RPS6KA1(5), RPS6KA5(7), SHC1(11), SOS1(21), SRC(2), STAT3(12) 10992088 231 61 223 50 56 98 32 12 29 4 0.051 0.27 118 HSA04730_LONG_TERM_DEPRESSION Genes involved in long-term depression ARAF, BRAF, C7orf16, CACNA1A, CRH, CRHR1, GNA11, GNA12, GNA13, GNAI1, GNAI2, GNAI3, GNAO1, GNAQ, GNAS, GNAZ, GRIA1, GRIA2, GRIA3, GRID2, GRM1, GRM5, GUCY1A2, GUCY1A3, GUCY1B3, GUCY2C, GUCY2D, GUCY2F, HRAS, IGF1, IGF1R, ITPR1, ITPR2, ITPR3, KRAS, LYN, MAP2K1, MAP2K2, MAPK1, MAPK3, NOS1, NOS2A, NOS3, NPR1, NPR2, NRAS, PLA2G10, PLA2G12A, PLA2G12B, PLA2G1B, PLA2G2A, PLA2G2D, PLA2G2E, PLA2G2F, PLA2G3, PLA2G4A, PLA2G5, PLA2G6, PLCB1, PLCB2, PLCB3, PLCB4, PPP2CA, PPP2CB, PPP2R1A, PPP2R1B, PPP2R2A, PPP2R2B, PPP2R2C, PRKCA, PRKCB1, PRKCG, PRKG1, PRKG2, RAF1, RYR1 69 ARAF(8), BRAF(12), C7orf16(3), CACNA1A(19), CRHR1(2), GNA11(3), GNA12(10), GNA13(9), GNAI1(4), GNAI2(7), GNAI3(3), GNAO1(5), GNAS(25), GNAZ(7), GRIA1(12), GRIA2(25), GRID2(13), GRM1(22), GRM5(22), GUCY1A2(10), GUCY1A3(12), GUCY1B3(7), GUCY2C(12), GUCY2D(7), GUCY2F(25), IGF1(3), IGF1R(13), ITPR1(31), ITPR2(38), ITPR3(23), LYN(7), MAP2K1(2), MAPK1(2), MAPK3(4), NOS1(21), NOS3(11), NPR1(14), NPR2(16), PLA2G10(1), PLA2G12A(1), PLA2G12B(3), PLA2G1B(1), PLA2G2D(2), PLA2G2E(3), PLA2G2F(3), PLA2G3(5), PLA2G4A(11), PLA2G5(2), PLA2G6(6), PLCB1(6), PLCB2(9), PLCB3(9), PLCB4(20), PPP2CA(6), PPP2CB(2), PPP2R1B(9), PPP2R2A(15), PPP2R2B(12), PPP2R2C(3), PRKCA(10), PRKCG(10), PRKG1(9), PRKG2(10), RAF1(7), RYR1(80) 36550509 724 98 705 235 182 298 125 30 85 4 0.051 0.27 119 MONOAMINE_GPCRS ADRA1A, ADRA1B, ADRA1D, ADRA2A, ADRA2C, ADRB1, ADRB2, ADRB3, CHRM1, CHRM2, CHRM3, CHRM4, CHRM5, DRD1, DRD2, DRD3, DRD4, DRD5, HRH1, HRH2, HTR1A, HTR1B, HTR1D, HTR1E, HTR1F, HTR2A, HTR2B, HTR2C, HTR4, HTR5A, HTR6, HTR7, HTR7, LOC93164 25 ADRA1A(11), ADRA1B(7), ADRB1(2), ADRB2(8), CHRM1(6), CHRM2(9), CHRM3(9), CHRM4(9), CHRM5(13), DRD1(6), DRD2(10), DRD3(5), DRD5(11), HRH1(9), HRH2(3), HTR1A(13), HTR1B(6), HTR1D(6), HTR1E(6), HTR2A(15), HTR2B(2), HTR4(7), HTR5A(9), HTR6(4), HTR7(4) 7414258 190 53 184 78 66 81 31 5 7 0 0.052 0.27 120 AMIPATHWAY Endogenous anti-thrombosis pathways are overwhelmed in plaque-narrowed blood vessels, resulting in potentially lethal myocardial infarction. ADCY1, CD3D, CD3E, CD3G, CD3Z, CD4, CREBBP, CSK, GNAS, GNB1, GNGT1, HLA-DRA, HLA-DRB1, LCK, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, PTPRC, TRA@, TRB@, ZAP70 20 ADCY1(17), CD3D(3), CD3E(2), CD3G(2), CD4(8), CREBBP(37), CSK(1), GNAS(25), GNB1(3), HLA-DRB1(1), LCK(5), PRKACB(2), PRKACG(6), PRKAR1A(4), PRKAR2A(4), PRKAR2B(5), PTPRC(15), ZAP70(10) 7419038 150 50 145 46 37 70 13 8 22 0 0.053 0.27 121 CSKPATHWAY Csk inhibits T-cell activation by phosphorylating Lck; Csk is regulated by cAMP-dependent kinases and is opposed by the T-cell activator CD45. ADCY1, CD3D, CD3E, CD3G, CD3Z, CD4, CREBBP, CSK, GNAS, GNB1, GNGT1, HLA-DRA, HLA-DRB1, LCK, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, PTPRC, TRA@, TRB@, ZAP70 20 ADCY1(17), CD3D(3), CD3E(2), CD3G(2), CD4(8), CREBBP(37), CSK(1), GNAS(25), GNB1(3), HLA-DRB1(1), LCK(5), PRKACB(2), PRKACG(6), PRKAR1A(4), PRKAR2A(4), PRKAR2B(5), PTPRC(15), ZAP70(10) 7419038 150 50 145 46 37 70 13 8 22 0 0.053 0.27 122 PHOSPHATIDYLINOSITOL_SIGNALING_SYSTEM ACVR1, ACVR1B, ACVRL1, AKT1, AURKB, BMPR1A, BMPR2, BUB1, CDC2L5, CDIPT, CDKL1, CDKL2, CDS1, CDS2, CLK1, CLK2, CLK4, COL4A3BP, CSNK2A1, CSNK2A1, CSNK2A1P, CSNK2A2, CSNK2B, DGKA, DGKB, DGKD, DGKE, DGKG, DGKH, DGKQ, DGKZ, IMPA1, INPP1, INPP4A, INPP4B, INPP5A, INPPL1, ITPKA, ITPKB, MAP3K10, MOS, NEK1, NEK3, OCRL, PAK4, PCTK1, PCTK2, PIK3C2A, PIK3C2B, PIK3C2G, PIK3CA, PIK3CB, PIK3CG, PIK4CA, PIK4CA, LOC220686, PIM2, PIP5K2B, PLCB1, PLCB2, PLCB3, PLCB4, PLCD1, PLCG1, PLCG2, PLK3, PRKACA, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, PRKCA, PRKCB1, PRKCD, PRKCE, PRKCG, PRKCH, PRKCQ, PRKCZ, PRKD1, PRKG1, RAF1, RPS6KA1, RPS6KA2, RPS6KA3, RPS6KA4, RPS6KB1, STK11, TGFBR1, VRK1 75 ACVR1(9), ACVR1B(6), ACVRL1(3), AKT1(8), AURKB(5), BMPR1A(8), BMPR2(14), BUB1(9), CDIPT(1), CDKL1(7), CDKL2(6), CDS1(3), CDS2(2), CLK1(9), CLK2(10), CLK4(6), COL4A3BP(3), CSNK2A1(9), CSNK2A2(5), DGKA(15), DGKB(17), DGKD(21), DGKE(4), DGKG(13), DGKH(11), DGKZ(9), IMPA1(4), INPP1(2), INPP4B(17), INPP5A(6), ITPKB(6), MAP3K10(7), MOS(8), NEK1(20), NEK3(12), OCRL(20), PAK4(2), PIK3C2A(20), PIK3C2B(15), PIK3C2G(22), PIK3CB(19), PIK3CG(25), PIM2(3), PLCB1(6), PLCB2(9), PLCB3(9), PLCB4(20), PLCD1(5), PLCG1(12), PLCG2(27), PLK3(12), PRKACA(4), PRKACB(2), PRKACG(6), PRKAR1A(4), PRKAR2A(4), PRKAR2B(5), PRKCA(10), PRKCD(7), PRKCE(11), PRKCG(10), PRKCH(9), PRKCQ(13), PRKCZ(4), PRKD1(8), PRKG1(9), RAF1(7), RPS6KA1(5), RPS6KA2(16), RPS6KA3(17), RPS6KA4(5), RPS6KB1(3), TGFBR1(8), VRK1(12) 36298603 700 96 678 226 192 259 106 41 96 6 0.053 0.27 123 GSPATHWAY Activated G-protein coupled receptors stimulate cAMP production and thus activate protein kinase A, involved in a number of signal transduction pathways. ADCY1, GNAS, GNB1, GNGT1, PRKACA, PRKAR1A 6 ADCY1(17), GNAS(25), GNB1(3), PRKACA(4), PRKAR1A(4) 2068545 53 29 51 10 14 27 3 4 5 0 0.053 0.27 124 HSA04350_TGF_BETA_SIGNALING_PATHWAY Genes involved in TGF-beta signaling pathway ACVR1, ACVR1B, ACVR1C, ACVR2A, ACVR2B, ACVRL1, AMH, AMHR2, BMP2, BMP4, BMP5, BMP6, BMP7, BMP8A, BMP8B, BMPR1A, BMPR1B, BMPR2, CDKN2B, CHRD, COMP, CREBBP, CUL1, DCN, E2F4, E2F5, EP300, FST, GDF5, GDF6, GDF7, hCG_1982709, ID1, ID2, ID3, ID4, IFNG, INHBA, INHBB, INHBC, INHBE, LEFTY1, LEFTY2, LTBP1, MAPK1, MAPK3, MYC, NODAL, NOG, PITX2, PPP2CA, PPP2CB, PPP2R1A, PPP2R1B, PPP2R2A, PPP2R2B, PPP2R2C, RBL1, RBL2, RBX1, RHOA, ROCK1, ROCK2, RPS6KB1, RPS6KB2, SKP1, SMAD1, SMAD2, SMAD3, SMAD4, SMAD5, SMAD6, SMAD7, SMAD9, SMURF1, SMURF2, SP1, TFDP1, TGFB1, TGFB2, TGFB3, TGFBR1, TGFBR2, THBS1, THBS2, THBS3, THBS4, TNF, ZFYVE16, ZFYVE9 78 ACVR1(9), ACVR1B(6), ACVR1C(7), ACVR2B(8), ACVRL1(3), AMHR2(4), BMP2(5), BMP4(7), BMP6(6), BMP8A(3), BMP8B(1), BMPR1A(8), BMPR1B(6), BMPR2(14), CHRD(14), COMP(7), CREBBP(37), CUL1(12), DCN(11), E2F4(3), E2F5(1), EP300(29), FST(7), GDF5(8), GDF6(4), ID1(2), ID2(1), IFNG(5), INHBA(7), INHBB(3), INHBC(4), INHBE(7), LEFTY1(2), LEFTY2(3), LTBP1(19), MAPK1(2), MAPK3(4), MYC(7), NODAL(2), NOG(1), PPP2CA(6), PPP2CB(2), PPP2R1B(9), PPP2R2A(15), PPP2R2B(12), PPP2R2C(3), RBL1(17), RBL2(21), RBX1(1), RHOA(4), ROCK1(27), ROCK2(15), RPS6KB1(3), RPS6KB2(6), SKP1(2), SMAD1(1), SMAD2(12), SMAD3(4), SMAD4(5), SMAD5(9), SMAD9(1), SMURF1(10), SMURF2(4), SP1(6), TGFB1(4), TGFB2(6), TGFB3(9), TGFBR1(8), TGFBR2(6), THBS1(12), THBS2(22), THBS3(6), THBS4(9), TNF(1), ZFYVE16(22), ZFYVE9(16) 31591498 605 93 589 168 176 219 85 26 88 11 0.054 0.27 125 PTDINSPATHWAY Phosphoinositide 3 kinase (PI3K) phosphorylate inositol rings of phosphoinositide lipids, influencing vesicle trafficking, cell proliferation, and migration. AKT1, AP2A1, AP2M1, ARF1, BAD, BTK, EEA1, GRASP, GSK3A, GSK3B, LYN, PDPK1, PFKL, PFKM, PFKP, PFKX, PLCG1, PRKCE, PRKCZ, RAB5A, RAC1, RPS6KB1, VAV2 21 AKT1(8), AP2A1(7), AP2M1(6), ARF1(4), BAD(2), BTK(11), EEA1(20), GRASP(3), GSK3A(9), GSK3B(11), LYN(7), PDPK1(3), PFKM(7), PFKP(11), PLCG1(12), PRKCE(11), PRKCZ(4), RAB5A(2), RPS6KB1(3), VAV2(5) 8006261 146 52 138 54 43 60 19 7 17 0 0.055 0.27 126 HSA00680_METHANE_METABOLISM Genes involved in methane metabolism ADH5, CAT, EPX, LPO, MPO, MTHFR, PRDX6, SHMT1, SHMT2, TPO 10 ADH5(3), CAT(5), EPX(14), LPO(6), MPO(9), MTHFR(7), PRDX6(2), SHMT1(6), SHMT2(8), TPO(18) 3889486 78 37 77 19 26 30 7 2 11 2 0.056 0.27 127 PROSTAGLANDIN_SYNTHESIS_REGULATION ANXA1, ANXA2, ANXA3, ANXA4, ANXA5, ANXA6, ANXA8, CYP11A1, EDN1, EDNRA, EDNRB, HPGD, HSD11B1, HSD11B2, PLA2G4A, PRL, PTGDR, PTGDS, PTGER1, PTGER2, PTGER4, PTGFR, PTGIR, PTGIS, PTGS1, PTGS2, S100A6, SCGB1A1, TBXAS1 27 ANXA1(4), ANXA2(1), ANXA3(8), ANXA4(8), ANXA5(3), ANXA6(10), CYP11A1(10), EDN1(2), EDNRA(6), EDNRB(2), HPGD(2), HSD11B1(4), PLA2G4A(11), PRL(6), PTGDR(6), PTGDS(6), PTGER2(5), PTGER4(8), PTGFR(10), PTGIR(3), PTGIS(8), PTGS1(8), PTGS2(7), SCGB1A1(1), TBXAS1(6) 7229033 145 48 144 43 45 54 19 7 20 0 0.056 0.27 128 HSA04620_TOLL_LIKE_RECEPTOR_SIGNALING_PATHWAY Genes involved in Toll-like receptor signaling pathway AKT1, AKT2, AKT3, CASP8, CCL3, CCL4, CCL5, CD14, CD40, CD80, CD86, CHUK, CXCL10, CXCL11, CXCL9, FADD, FOS, IFNA1, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA2, IFNA21, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, IFNAR1, IFNAR2, IFNB1, IKBKB, IKBKE, IKBKG, IL12A, IL12B, IL1B, IL6, IL8, IRAK1, IRAK4, IRF3, IRF5, IRF7, JUN, LBP, LY96, MAP2K1, MAP2K2, MAP2K3, MAP2K4, MAP2K6, MAP2K7, MAP3K7, MAP3K7IP1, MAP3K7IP2, MAP3K8, MAPK1, MAPK10, MAPK11, MAPK12, MAPK13, MAPK14, MAPK3, MAPK8, MAPK9, MYD88, NFKB1, NFKB2, NFKBIA, PIK3CA, PIK3CB, PIK3CD, PIK3CG, PIK3R1, PIK3R2, PIK3R3, PIK3R5, RAC1, RELA, RIPK1, SPP1, STAT1, TBK1, TICAM1, TICAM2, TIRAP, TLR1, TLR2, TLR3, TLR4, TLR5, TLR6, TLR7, TLR8, TLR9, TNF, TOLLIP, TRAF3, TRAF6 90 AKT1(8), AKT2(4), AKT3(8), CCL3(1), CCL4(1), CCL5(4), CD14(2), CD40(4), CD80(7), CD86(6), CHUK(11), CXCL10(2), CXCL11(1), CXCL9(2), FADD(1), FOS(6), IFNA10(2), IFNA13(3), IFNA14(3), IFNA16(2), IFNA17(2), IFNA2(1), IFNA21(2), IFNA4(3), IFNA5(2), IFNA6(6), IFNA7(2), IFNA8(2), IFNAR1(9), IFNAR2(8), IFNB1(4), IKBKB(15), IKBKE(3), IL12A(7), IL12B(3), IL1B(2), IL6(2), IL8(3), IRAK1(5), IRAK4(6), IRF3(6), IRF5(3), JUN(1), LBP(4), LY96(4), MAP2K1(2), MAP2K3(8), MAP2K4(6), MAP2K6(9), MAP3K7(8), MAP3K8(12), MAPK1(2), MAPK10(9), MAPK13(2), MAPK14(6), MAPK3(4), MAPK8(7), MAPK9(7), MYD88(1), NFKB1(12), NFKB2(10), NFKBIA(3), PIK3CB(19), PIK3CD(10), PIK3CG(25), PIK3R2(4), PIK3R3(8), PIK3R5(8), RELA(6), RIPK1(8), SPP1(3), STAT1(14), TBK1(6), TICAM1(8), TICAM2(5), TIRAP(3), TLR1(12), TLR2(12), TLR3(6), TLR4(14), TLR5(8), TLR6(10), TLR7(15), TLR8(18), TLR9(7), TNF(1), TRAF3(6), TRAF6(4) 28278719 531 88 519 149 131 215 80 31 72 2 0.056 0.27 129 ST_ADRENERGIC Adrenergic receptors respond to epinephrine and norepinephrine signaling. AKT1, APC, AR, ASAH1, BF, BRAF, CAMP, CCL13, CCL15, CCL16, DAG1, EGFR, GAS, GNA11, GNA15, GNAI1, GNAQ, ITPKA, ITPKB, ITPR1, ITPR2, ITPR3, KCNJ3, KCNJ5, KCNJ9, MAPK1, MAPK10, MAPK14, PHKA2, PIK3CA, PIK3CD, PIK3R1, PITX2, PTX1, PTX3, RAF1, SRC 29 AKT1(8), AR(5), ASAH1(9), BRAF(12), CAMP(1), CCL13(2), CCL15(2), CCL16(1), DAG1(7), EGFR(20), GNA11(3), GNA15(1), GNAI1(4), ITPKB(6), ITPR1(31), ITPR2(38), ITPR3(23), KCNJ3(15), KCNJ5(6), KCNJ9(4), MAPK1(2), MAPK10(9), MAPK14(6), PHKA2(15), PIK3CD(10), PTX3(2), RAF1(7), SRC(2) 14822541 251 65 245 86 66 111 35 6 29 4 0.056 0.27 130 IL5PATHWAY Pro-inflammatory IL-5 is secretes by activated T cells, eosinophils, and mast cells, and stimulates the proliferation and activation of eosinophils in bone marrow. CCL11, CCR3, CD4, HLA-DRA, HLA-DRB1, IL1B, IL4, IL5, IL5RA, IL6 10 CCR3(5), CD4(8), HLA-DRB1(1), IL1B(2), IL5(2), IL5RA(9), IL6(2) 1925145 29 21 27 11 3 15 1 0 10 0 0.058 0.27 131 MTA3PATHWAY The estrogen receptor regulates proliferation in mammary epithelia via MTA3 activation; loss of either protein is implicated in breast cancer. ALDOA, CTSD, ESR1, GAPD, GREB1, HSPB1, HSPB2, MTA1, MTA3, PDZK1, TUBA1, TUBA2, TUBA3, TUBA4, TUBA6, TUBA8 8 ALDOA(6), CTSD(5), GREB1(16), HSPB2(1), MTA1(4), MTA3(5), PDZK1(4), TUBA8(11) 3076886 52 31 52 17 12 24 4 5 7 0 0.059 0.28 132 HSA00627_1,4_DICHLOROBENZENE_DEGRADATION Genes involved in 1,4-dichlorobenzene degradation CMBL 1 CMBL(4) 181162 4 4 4 1 2 1 0 0 1 0 0.060 0.28 133 CYSTEINE_METABOLISM CARS, CTH, GOT1, GOT2, LDHA, LDHB, LDHC, MPST 7 CARS(10), CTH(5), GOT1(6), GOT2(5), LDHA(6), LDHB(2), LDHC(3) 2295356 37 28 36 17 8 14 3 4 8 0 0.060 0.28 134 HSA00471_D_GLUTAMINE_AND_D_GLUTAMATE_METABOLISM Genes involved in D-glutamine and D-glutamate metabolism GLS, GLS2, GLUD1, GLUD2 4 GLS(10), GLS2(9), GLUD1(4), GLUD2(9) 1451447 32 21 31 11 8 12 5 1 6 0 0.061 0.28 135 BADPATHWAY When phosphorylated, BAD is inhibited by sequestration; when non-phosphorylated, it promotes apoptosis by inactivating pro-survival BCL-XL and BCL-2. ADCY1, AKT1, BAD, BAX, BCL2, BCL2L1, CSF2RB, IGF1, IGF1R, IL3, IL3RA, KIT, KITLG, PIK3CA, PIK3R1, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, YWHAH 19 ADCY1(17), AKT1(8), BAD(2), BAX(4), BCL2L1(3), CSF2RB(11), IGF1(3), IGF1R(13), IL3RA(11), KIT(28), KITLG(2), PRKACB(2), PRKACG(6), PRKAR1A(4), PRKAR2A(4), PRKAR2B(5), YWHAH(4) 5871035 127 43 121 42 33 56 13 10 15 0 0.063 0.28 136 METHANE_METABOLISM ADH5, ATP6V0C, SHMT1, CAT, EPX, LPO, MPO, PRDX1, PRDX2, PRDX5, PRDX6, SHMT1, SHMT2, TPO 13 ADH5(3), ATP6V0C(2), CAT(5), EPX(14), LPO(6), MPO(9), PRDX1(1), PRDX2(4), PRDX5(3), PRDX6(2), SHMT1(6), SHMT2(8), TPO(18) 3906933 81 38 80 23 28 34 7 2 8 2 0.063 0.28 137 NDKDYNAMINPATHWAY Endocytotic role of NDK, Phosphins and Dynamin AMPH, AP2A1, AP2M1, BIN1, CALM1, CALM2, CALM3, DNM1, EPN1, EPS15, NME1, NME2, PICALM, PPP3CA, PPP3CB, PPP3CC, SYNJ1, SYNJ2, SYT1 18 AMPH(17), AP2A1(7), AP2M1(6), BIN1(3), CALM2(3), CALM3(1), DNM1(5), EPS15(12), PICALM(13), PPP3CA(4), PPP3CB(7), PPP3CC(6), SYNJ1(27), SYNJ2(13), SYT1(4) 7388446 128 49 124 44 37 43 24 7 17 0 0.063 0.28 138 HSA04912_GNRH_SIGNALING_PATHWAY Genes involved in GnRH signaling pathway ADCY1, ADCY2, ADCY3, ADCY4, ADCY5, ADCY6, ADCY7, ADCY8, ADCY9, ATF4, CACNA1C, CACNA1D, CACNA1F, CACNA1S, CALM1, CALM2, CALM3, CALML3, CALML6, CAMK2A, CAMK2B, CAMK2D, CAMK2G, CDC42, CGA, EGFR, ELK1, FSHB, GNA11, GNAQ, GNAS, GNRH1, GNRH2, GNRHR, GRB2, HBEGF, HRAS, ITPR1, ITPR2, ITPR3, JUN, KRAS, LHB, MAP2K1, MAP2K2, MAP2K3, MAP2K4, MAP2K6, MAP2K7, MAP3K1, MAP3K2, MAP3K3, MAP3K4, MAPK1, MAPK10, MAPK11, MAPK12, MAPK13, MAPK14, MAPK3, MAPK7, MAPK8, MAPK9, MMP14, MMP2, NRAS, PLA2G10, PLA2G12A, PLA2G12B, PLA2G1B, PLA2G2A, PLA2G2D, PLA2G2E, PLA2G2F, PLA2G3, PLA2G4A, PLA2G5, PLA2G6, PLCB1, PLCB2, PLCB3, PLCB4, PLD1, PLD2, PRKACA, PRKACB, PRKACG, PRKCA, PRKCB1, PRKCD, PRKX, PRKY, PTK2B, RAF1, SOS1, SOS2, SRC 88 ADCY1(17), ADCY2(17), ADCY3(8), ADCY4(8), ADCY5(11), ADCY6(16), ADCY7(6), ADCY8(16), ADCY9(25), ATF4(4), CACNA1C(30), CACNA1D(34), CACNA1F(36), CACNA1S(33), CALM2(3), CALM3(1), CALML6(4), CAMK2A(8), CAMK2B(2), CAMK2D(7), CAMK2G(8), CDC42(5), CGA(1), EGFR(20), ELK1(2), GNA11(3), GNAS(25), GNRH1(1), GNRH2(1), GNRHR(4), GRB2(3), HBEGF(3), ITPR1(31), ITPR2(38), ITPR3(23), JUN(1), LHB(3), MAP2K1(2), MAP2K3(8), MAP2K4(6), MAP2K6(9), MAP3K2(8), MAP3K3(9), MAP3K4(23), MAPK1(2), MAPK10(9), MAPK13(2), MAPK14(6), MAPK3(4), MAPK7(17), MAPK8(7), MAPK9(7), MMP14(5), MMP2(11), PLA2G10(1), PLA2G12A(1), PLA2G12B(3), PLA2G1B(1), PLA2G2D(2), PLA2G2E(3), PLA2G2F(3), PLA2G3(5), PLA2G4A(11), PLA2G5(2), PLA2G6(6), PLCB1(6), PLCB2(9), PLCB3(9), PLCB4(20), PLD1(16), PLD2(7), PRKACA(4), PRKACB(2), PRKACG(6), PRKCA(10), PRKCD(7), PRKX(4), PTK2B(16), RAF1(7), SOS1(21), SOS2(22), SRC(2) 42244445 799 101 780 253 214 347 98 39 89 12 0.063 0.28 139 HSA00643_STYRENE_DEGRADATION Genes involved in styrene degradation FAH, GSTZ1, HGD 2 FAH(7), GSTZ1(4) 463421 11 10 11 1 0 6 1 2 2 0 0.064 0.28 140 HSA04640_HEMATOPOIETIC_CELL_LINEAGE Genes involved in hematopoietic cell lineage ANPEP, CD14, CD19, CD1A, CD1B, CD1C, CD1D, CD1E, CD2, CD22, CD24, CD33, CD34, CD36, CD37, CD38, CD3D, CD3E, CD3G, CD4, CD44, CD5, CD55, CD59, CD7, CD8A, CD8B, CD9, CR1, CR2, CSF1, CSF1R, CSF2, CSF2RA, CSF3, CSF3R, DNTT, EPO, EPOR, FCER2, FCGR1A, FLT3, FLT3LG, GP1BA, GP1BB, GP5, GP9, GYPA, HLA-DRA, HLA-DRB1, HLA-DRB3, HLA-DRB4, HLA-DRB5, IL11, IL11RA, IL1A, IL1B, IL1R1, IL1R2, IL2RA, IL3, IL3RA, IL4, IL4R, IL5, IL5RA, IL6, IL6R, IL7, IL7R, IL9R, ITGA1, ITGA2, ITGA2B, ITGA3, ITGA4, ITGA5, ITGA6, ITGAM, ITGB3, KIT, KITLG, MME, MS4A1, TFRC, THPO, TNF, TPO 81 ANPEP(13), CD14(2), CD19(7), CD1A(5), CD1B(3), CD1D(3), CD1E(6), CD2(4), CD22(13), CD33(11), CD34(4), CD36(7), CD37(1), CD38(7), CD3D(3), CD3E(2), CD3G(2), CD4(8), CD44(12), CD5(7), CD55(6), CD59(2), CD8A(3), CD8B(1), CD9(4), CR1(28), CSF1(5), CSF1R(7), CSF2RA(9), CSF3(1), CSF3R(11), DNTT(6), EPO(2), EPOR(4), FCER2(2), FCGR1A(7), FLT3(9), FLT3LG(4), GP1BA(11), GP5(5), GYPA(2), HLA-DRB1(1), HLA-DRB5(1), IL11RA(7), IL1A(1), IL1B(2), IL1R1(5), IL1R2(7), IL2RA(3), IL3RA(11), IL4R(6), IL5(2), IL5RA(9), IL6(2), IL6R(12), IL7(2), IL7R(9), ITGA1(20), ITGA2(21), ITGA2B(11), ITGA3(6), ITGA4(12), ITGA5(12), ITGA6(12), ITGAM(24), ITGB3(16), KIT(28), KITLG(2), MME(8), MS4A1(6), TFRC(6), THPO(11), TNF(1), TPO(18) 28071506 543 88 528 183 159 203 72 27 76 6 0.065 0.29 141 ST_INTEGRIN_SIGNALING_PATHWAY Integrins are transmembrane receptors that mediate cell growth, survival, and migration by binding to ligands in the extracellular matrix. ABL1, ACK1, ACTN1, ACTR2, ACTR3, AKT1, AKT2, AKT3, ANGPTL2, ARHGEF6, ARHGEF7, BCAR1, BRAF, CAV1, CDC42, CDKN2A, CRK, CSE1L, DDEF1, DOCK1, EPHB2, FYN, GRAF, GRB2, GRB7, GRF2, GRLF1, ILK, ITGA1, ITGA10, ITGA11, ITGA2, ITGA3, ITGA4, ITGA5, ITGA6, ITGA7, ITGA8, ITGA9, ITGB3BP, MAP2K4, MAP2K7, MAP3K11, MAPK1, MAPK10, MAPK8, MAPK8IP1, MAPK8IP2, MAPK8IP3, MAPK9, MRAS, MYLK, MYLK2, P4HB, PAK1, PAK2, PAK3, PAK4, PAK6, PAK7, PIK3CA, PIK3CB, PKLR, PLCG1, PLCG2, PTEN, PTK2, RAF1, RALA, RHO, ROCK1, ROCK2, SHC1, SOS1, SOS2, SRC, TERF2IP, TLN1, TLN2, VASP, WAS, ZYX 71 ABL1(9), ACTN1(13), ACTR2(7), ACTR3(3), AKT1(8), AKT2(4), AKT3(8), ANGPTL2(9), ARHGEF6(19), ARHGEF7(13), BRAF(12), CDC42(5), CDKN2A(1), CRK(1), CSE1L(15), DOCK1(32), EPHB2(10), FYN(7), GRB2(3), GRB7(3), ILK(8), ITGA1(20), ITGA10(11), ITGA11(12), ITGA2(21), ITGA3(6), ITGA4(12), ITGA5(12), ITGA6(12), ITGA7(10), ITGA8(16), ITGA9(15), ITGB3BP(2), MAP2K4(6), MAP3K11(5), MAPK1(2), MAPK10(9), MAPK8(7), MAPK8IP1(5), MAPK9(7), MRAS(3), MYLK(17), MYLK2(7), P4HB(1), PAK1(3), PAK2(6), PAK3(14), PAK4(2), PAK6(3), PAK7(12), PIK3CB(19), PKLR(10), PLCG1(12), PLCG2(27), PTK2(11), RAF1(7), RALA(4), RHO(8), ROCK1(27), ROCK2(15), SHC1(11), SOS1(21), SOS2(22), SRC(2), TERF2IP(4), TLN1(28), TLN2(29), VASP(2), ZYX(12) 39944070 719 98 689 197 184 275 97 35 120 8 0.066 0.29 142 HCMVPATHWAY Cytomegalovirus activates MAP kinase pathways in the host cell, inducing transcription of viral genes. AKT1, CREB1, MAP2K1, MAP2K2, MAP2K3, MAP2K6, MAP3K1, MAPK1, MAPK14, MAPK3, NFKB1, PIK3CA, PIK3R1, RB1, RELA, SP1 11 AKT1(8), CREB1(5), MAP2K1(2), MAP2K3(8), MAP2K6(9), MAPK1(2), MAPK14(6), MAPK3(4), NFKB1(12), RELA(6), SP1(6) 3780263 68 34 65 16 5 36 15 6 6 0 0.066 0.29 143 HSA00590_ARACHIDONIC_ACID_METABOLISM Genes involved in arachidonic acid metabolism AKR1C3, ALOX12, ALOX12B, ALOX15, ALOX15B, ALOX5, CBR1, CBR3, CYP2B6, CYP2C18, CYP2C19, CYP2C8, CYP2C9, CYP2E1, CYP2J2, CYP2U1, CYP4A11, CYP4A22, CYP4F2, CYP4F3, DHRS4, EPHX2, GGT1, GGTL3, GGTL4, GPX1, GPX2, GPX3, GPX4, GPX5, GPX6, GPX7, LTA4H, LTC4S, PGDS, PLA2G10, PLA2G12A, PLA2G12B, PLA2G1B, PLA2G2A, PLA2G2D, PLA2G2E, PLA2G2F, PLA2G3, PLA2G4A, PLA2G5, PLA2G6, PTGDS, PTGES, PTGES2, PTGIS, PTGS1, PTGS2, TBXAS1 49 AKR1C3(3), ALOX12(6), ALOX12B(10), ALOX15(12), ALOX15B(12), ALOX5(7), CBR1(2), CBR3(2), CYP2B6(11), CYP2C18(5), CYP2C19(7), CYP2C8(4), CYP2C9(5), CYP2E1(5), CYP2J2(5), CYP2U1(2), CYP4A11(5), CYP4A22(8), CYP4F2(11), CYP4F3(8), EPHX2(7), GGT1(10), GPX3(4), GPX5(7), GPX6(6), GPX7(1), LTA4H(6), PLA2G10(1), PLA2G12A(1), PLA2G12B(3), PLA2G1B(1), PLA2G2D(2), PLA2G2E(3), PLA2G2F(3), PLA2G3(5), PLA2G4A(11), PLA2G5(2), PLA2G6(6), PTGDS(6), PTGES(2), PTGES2(2), PTGIS(8), PTGS1(8), PTGS2(7), TBXAS1(6) 12931334 248 63 242 75 67 103 34 13 29 2 0.070 0.30 144 CHOLESTEROL_BIOSYNTHESIS C10orf110, CYP51A1, DHCR7, FDFT1, FDPS, FDPS, LOC402397, HMGCR, HMGCS1, IDI1, LSS, MVD, MVK, NSDHL, PMVK, SC4MOL, SC5DL, SQLE 15 CYP51A1(4), DHCR7(4), FDFT1(3), FDPS(7), HMGCR(15), HMGCS1(4), IDI1(4), MVD(3), MVK(7), NSDHL(9), PMVK(2), SC4MOL(3), SC5DL(3), SQLE(6) 4147606 74 36 73 29 19 22 12 7 14 0 0.070 0.30 145 SPRYPATHWAY Four members of the Sprouty protein family block proliferative EGF signals by binding Grb-2, preventing Ras and MAP kinase activation. CBL, EGF, EGFR, GRB2, HRAS, MAP2K1, MAPK1, MAPK3, PTPRB, RAF1, RASA1, SHC1, SOS1, SPRY1, SPRY2, SPRY3, SPRY4, SRC 17 CBL(10), EGF(24), EGFR(20), GRB2(3), MAP2K1(2), MAPK1(2), MAPK3(4), PTPRB(31), RAF1(7), SHC1(11), SOS1(21), SPRY1(4), SPRY2(6), SPRY4(2), SRC(2) 8068879 149 50 146 40 39 59 26 8 15 2 0.072 0.31 146 PROSTAGLANDIN_AND_LEUKOTRIENE_METABOLISM AKR1C3, ALOX12, ALOX15, ALOX5, CBR1, CBR3, CYP4F2, CYP4F3, CYP4F3, CYP4F2, EPX, GGT1, LPO, LTA4H, MPO, PGDS, PLA2G1B, PLA2G2A, PLA2G2E, PLA2G3, PLA2G4A, PLA2G5, PLA2G6, PRDX1, PRDX2, PRDX5, PRDX6, PTGDS, PTGES2, PTGIS, PTGS1, PTGS2, TBXAS1, TPO 31 AKR1C3(3), ALOX12(6), ALOX15(12), ALOX5(7), CBR1(2), CBR3(2), CYP4F2(11), CYP4F3(8), EPX(14), GGT1(10), LPO(6), LTA4H(6), MPO(9), PLA2G1B(1), PLA2G2E(3), PLA2G3(5), PLA2G4A(11), PLA2G5(2), PLA2G6(6), PRDX1(1), PRDX2(4), PRDX5(3), PRDX6(2), PTGDS(6), PTGES2(2), PTGIS(8), PTGS1(8), PTGS2(7), TBXAS1(6), TPO(18) 9229941 189 55 185 61 55 83 26 7 18 0 0.073 0.31 147 G1PATHWAY CDK4/6-cyclin D and CDK2-cyclin E phosphorylate Rb, which allows the transcription of genes needed for the G1/S cell cycle transition. ABL1, ATM, ATR, CCNA1, CCND1, CCNE1, CDC2, CDC25A, CDK2, CDK4, CDK6, CDKN1A, CDKN1B, CDKN2A, CDKN2B, DHFR, E2F1, GSK3B, HDAC1, MADH3, MADH4, RB1, SKP2, TFDP1, TGFB1, TGFB2, TGFB3, TP53 19 ABL1(9), ATR(38), CCNA1(4), CDC25A(9), CDK2(5), CDK4(4), CDK6(3), CDKN1A(1), CDKN1B(5), CDKN2A(1), DHFR(3), GSK3B(11), HDAC1(4), SKP2(6), TGFB1(4), TGFB2(6), TGFB3(9) 6939365 122 43 121 36 19 57 16 5 21 4 0.073 0.31 148 PPARAPATHWAY Peroxisome proliferators regulate gene expression via PPAR/RXR heterodimers which bind to peroxisome-proliferator response elements (PPREs). ACOX1, APOA1, APOA2, CD36, CITED2, CPT1B, CREBBP, DUSP1, DUT, EHHADH, EP300, FABP1, FAT, FRA8B, HSD17B4, HSPA1A, HSPCA, INS, JUN, LPL, MAPK1, MAPK3, ME1, MRPL11, MYC, NCOA1, NCOR1, NCOR2, NFKBIA, NOS2A, NR0B2, NR1H3, NR2F1, NRIP1, PDGFA, PIK3CA, PIK3R1, PPARA, PPARBP, PPARGC1, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, PRKCA, PRKCB1, PTGS2, RB1, RELA, RXRA, SP1, SRA1, STAT5A, STAT5B, TNF 42 ACOX1(4), APOA2(2), CD36(7), CITED2(1), CREBBP(37), DUSP1(2), DUT(1), EHHADH(9), EP300(29), FABP1(5), HSD17B4(10), JUN(1), LPL(11), MAPK1(2), MAPK3(4), ME1(10), MRPL11(1), MYC(7), NCOA1(17), NCOR1(24), NCOR2(24), NFKBIA(3), NR0B2(2), NR1H3(5), NR2F1(5), NRIP1(18), PPARA(2), PRKACB(2), PRKACG(6), PRKAR1A(4), PRKAR2A(4), PRKAR2B(5), PRKCA(10), PTGS2(7), RELA(6), RXRA(1), SP1(6), SRA1(3), STAT5A(5), STAT5B(5), TNF(1) 18478524 308 68 301 95 72 124 44 19 47 2 0.074 0.31 149 TALL1PATHWAY APRIL and BAFF bind to BCMA and TACI receptors on B cell surfaces, promoting immunoglobulin production and cell proliferation. CHUK, MAP3K14, MAPK14, MAPK8, NFKB1, RELA, TNFRSF13B, TNFRSF13C, TNFRSF17, TNFSF13, TNFSF13B, TRAF2, TRAF3, TRAF5, TRAF6 14 CHUK(11), MAP3K14(12), MAPK14(6), MAPK8(7), NFKB1(12), RELA(6), TNFRSF13B(4), TNFRSF17(2), TNFSF13B(3), TRAF2(5), TRAF3(6), TRAF5(8), TRAF6(4) 4964508 86 39 85 19 18 33 14 4 17 0 0.079 0.32 150 HSA00591_LINOLEIC_ACID_METABOLISM Genes involved in linoleic acid metabolism AKR1B10, ALOX15, ALOX5, CYP1A2, CYP2C18, CYP2C19, CYP2C8, CYP2C9, CYP2E1, CYP2J2, CYP3A4, CYP3A43, CYP3A5, CYP3A7, HSD3B7, PLA2G10, PLA2G12A, PLA2G12B, PLA2G1B, PLA2G2A, PLA2G2D, PLA2G2E, PLA2G2F, PLA2G3, PLA2G4A, PLA2G5, PLA2G6, RDH11, RDH12, RDH13, RDH14 31 AKR1B10(4), ALOX15(12), ALOX5(7), CYP1A2(6), CYP2C18(5), CYP2C19(7), CYP2C8(4), CYP2C9(5), CYP2E1(5), CYP2J2(5), CYP3A4(14), CYP3A43(5), CYP3A5(7), CYP3A7(9), HSD3B7(3), PLA2G10(1), PLA2G12A(1), PLA2G12B(3), PLA2G1B(1), PLA2G2D(2), PLA2G2E(3), PLA2G2F(3), PLA2G3(5), PLA2G4A(11), PLA2G5(2), PLA2G6(6), RDH11(3), RDH12(6), RDH13(5), RDH14(3) 8182643 153 51 150 44 37 60 25 8 23 0 0.079 0.32 151 HSA00430_TAURINE_AND_HYPOTAURINE_METABOLISM Genes involved in taurine and hypotaurine metabolism BAAT, CDO1, CSAD, GAD1, GAD2, GGT1, GGTL3, GGTL4 6 BAAT(7), CDO1(4), CSAD(10), GAD1(8), GAD2(12), GGT1(10) 2029827 51 28 50 9 15 13 16 1 6 0 0.080 0.33 152 MAPKPATHWAY The mitogen-activated protein (MAP) kinase pathway is a common signaling mechanism and has four main sub-pathways: Erk, JNK/SAPK, p53, and ERK5. ARAF1, ATF2, BRAF, CEBPA, CHUK, CREB1, DAXX, ELK1, FOS, GRB2, HRAS, IKBKB, JUN, MAP2K1, MAP2K2, MAP2K3, MAP2K4, MAP2K5, MAP2K6, MAP2K7, MAP3K1, MAP3K10, MAP3K11, MAP3K12, MAP3K13, MAP3K14, MAP3K2, MAP3K3, MAP3K4, MAP3K5, MAP3K6, MAP3K7, MAP3K8, MAP3K9, MAP4K1, MAP4K2, MAP4K3, MAP4K4, MAP4K5, MAPK1, MAPK10, MAPK11, MAPK12, MAPK13, MAPK14, MAPK3, MAPK4, MAPK6, MAPK7, MAPK8, MAPK9, MAPKAPK2, MAPKAPK3, MAPKAPK5, MAX, MEF2A, MEF2B, MEF2C, MEF2D, MKNK1, MKNK2, MYC, NFKB1, NFKBIA, PAK1, PAK2, PDZGEF1, RAC1, RAF1, RELA, RIPK1, RPS6KA1, RPS6KA2, RPS6KA3, RPS6KA4, RPS6KA5, RPS6KB1, RPS6KB2, SHC1, SP1, STAT1, TGFB1, TGFB2, TGFB3, TGFBR1, TRADD, TRAF2 78 ATF2(6), BRAF(12), CHUK(11), CREB1(5), DAXX(11), ELK1(2), FOS(6), GRB2(3), IKBKB(15), JUN(1), MAP2K1(2), MAP2K3(8), MAP2K4(6), MAP2K5(2), MAP2K6(9), MAP3K10(7), MAP3K11(5), MAP3K12(8), MAP3K13(13), MAP3K14(12), MAP3K2(8), MAP3K3(9), MAP3K4(23), MAP3K5(21), MAP3K6(7), MAP3K7(8), MAP3K8(12), MAP3K9(6), MAP4K1(13), MAP4K2(6), MAP4K3(21), MAP4K4(14), MAP4K5(7), MAPK1(2), MAPK10(9), MAPK13(2), MAPK14(6), MAPK3(4), MAPK4(6), MAPK6(11), MAPK7(17), MAPK8(7), MAPK9(7), MAPKAPK2(6), MAPKAPK3(4), MAPKAPK5(6), MAX(8), MEF2A(5), MEF2B(3), MEF2C(11), MEF2D(7), MKNK1(6), MKNK2(4), MYC(7), NFKB1(12), NFKBIA(3), PAK1(3), PAK2(6), RAF1(7), RELA(6), RIPK1(8), RPS6KA1(5), RPS6KA2(16), RPS6KA3(17), RPS6KA4(5), RPS6KA5(7), RPS6KB1(3), RPS6KB2(6), SHC1(11), SP1(6), STAT1(14), TGFB1(4), TGFB2(6), TGFB3(9), TGFBR1(8), TRAF2(5) 30941418 604 93 590 148 139 256 82 35 88 4 0.081 0.33 153 IL17PATHWAY Activated T cells secrete IL-17, which stimulates fibroblasts and other cells to secrete inflammatory and hematopoietic cytokines. CD2, CD34, CD3D, CD3E, CD3G, CD3Z, CD4, CD58, CD8A, CSF3, IL17, IL3, IL6, IL8, KITLG, TRA@, TRB@ 13 CD2(4), CD34(4), CD3D(3), CD3E(2), CD3G(2), CD4(8), CD58(1), CD8A(3), CSF3(1), IL6(2), IL8(3), KITLG(2) 2198083 35 23 35 8 6 18 3 0 8 0 0.084 0.34 154 ST_MYOCYTE_AD_PATHWAY Cardiac myocytes have a variety of adrenergic receptors that induce subtype-specific signaling effects. ADRB1, AKT1, APC, ASAH1, BF, CAMP, CAV3, DAG1, DLG4, EPHB2, GAS, GNAI1, GNAQ, HTATIP, ITPR1, ITPR2, ITPR3, KCNJ3, KCNJ5, KCNJ9, MAPK1, PITX2, PLB, PTX1, PTX3, RAC1, RHO, RYR1 21 ADRB1(2), AKT1(8), ASAH1(9), CAMP(1), DAG1(7), DLG4(13), EPHB2(10), GNAI1(4), ITPR1(31), ITPR2(38), ITPR3(23), KCNJ3(15), KCNJ5(6), KCNJ9(4), MAPK1(2), PTX3(2), RHO(8), RYR1(80) 14019262 263 66 249 104 80 121 32 6 22 2 0.086 0.34 155 ALTERNATIVEPATHWAY The alternative complement pathway is an antibody-independent mechanism of immune activation that results in cell lysis via the membrane attack complex. BF, C3, C5, C6, C7, C8A, C9, DF, PFC 5 C3(24), C5(20), C6(23), C7(21), C8A(12) 3912669 100 36 95 21 22 40 16 5 13 4 0.086 0.34 156 APOPTOSIS APAF1, BAD, BAK1, BCL2L7P1, BAX, BCL2, BCL2L1, BCL2L11, BID, BIRC2, BIRC3, BIRC4, BIRC5, BNIP3L, CASP1, CASP10, CASP1, COPl, CASP2, CASP3, CASP4, CASP6, CASP7, CASP8, CASP9, CHUK, CYCS, DFFA, DFFB, FADD, FAS, FASLG, GZMB, HELLS, HRK, IKBKB, IKBKG, IRF1, IRF2, IRF3, IRF4, IRF5, IRF6, IRF7, JUN, LTA, MAP2K4, MAP3K1, MAPK10, MDM2, MYC, NFKB1, NFKBIA, NFKBIB, NFKBIE, PRF1, RELA, RIPK1, TNF, TNFRSF10B, TNFRSF1A, TNFRSF1B, TNFRSF21, TNFRSF25, TNFRSF25, PLEKHG5, TNFSF10, TP53, TP73, TRADD, TRAF1, TRAF2, TRAF3 60 APAF1(19), BAD(2), BAK1(4), BAX(4), BCL2L1(3), BCL2L11(4), BID(3), BIRC2(13), BIRC3(3), BIRC5(4), BNIP3L(2), CASP1(7), CASP10(10), CASP2(9), CASP3(4), CASP4(8), CASP6(4), CASP7(4), CASP9(3), CHUK(11), CYCS(3), DFFA(1), DFFB(3), FADD(1), FAS(7), FASLG(6), GZMB(2), HELLS(14), IKBKB(15), IRF1(2), IRF2(6), IRF3(6), IRF4(6), IRF5(3), IRF6(9), JUN(1), LTA(3), MAP2K4(6), MAPK10(9), MDM2(6), MYC(7), NFKB1(12), NFKBIA(3), NFKBIB(3), NFKBIE(6), PLEKHG5(5), PRF1(8), RELA(6), RIPK1(8), TNF(1), TNFRSF10B(5), TNFRSF1A(6), TNFRSF1B(3), TNFRSF21(3), TNFRSF25(1), TNFSF10(1), TRAF1(5), TRAF2(5), TRAF3(6) 17281373 324 68 317 100 75 129 46 19 53 2 0.088 0.35 157 NEUROTRANSMITTERSPATHWAY Biosynthesis of neurotransmitters DBH, GAD1, HDC, PNMT, TH, TPH1 5 DBH(12), GAD1(8), HDC(10), PNMT(3), TPH1(14) 1856313 47 27 46 7 12 18 9 1 5 2 0.089 0.35 158 ANDROGEN_AND_ESTROGEN_METABOLISM AKR1C4, AKR1D1, ARSB, ARSD, ARSE, CYP11B1, CYP11B2, HSD11B1, HSD11B2, HSD17B2, HSD17B3, HSD17B8, HSD3B1, HSD3B2, SRD5A1, SRD5A2, STS, SULT1E1, SULT2A1, UGT1A10, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, UGT1A6, UGT1A8, UGT1A9, UGT2B15, UGT2B4 30 AKR1C4(5), AKR1D1(8), ARSB(6), ARSD(9), ARSE(7), CYP11B1(6), CYP11B2(7), HSD11B1(4), HSD17B2(3), HSD17B3(6), HSD17B8(2), HSD3B1(1), HSD3B2(5), SRD5A1(4), SRD5A2(4), STS(9), SULT1E1(13), SULT2A1(7), UGT1A1(6), UGT1A10(8), UGT1A3(4), UGT1A4(4), UGT1A5(7), UGT1A6(5), UGT1A7(9), UGT1A8(4), UGT1A9(4), UGT2B15(9), UGT2B4(10) 9296383 176 53 167 51 50 70 22 14 20 0 0.091 0.35 159 HSA00625_TETRACHLOROETHENE_DEGRADATION Genes involved in tetrachloroethene degradation AKR1B10, EPHX2, HSD3B7, RDH11, RDH12, RDH13, RDH14 7 AKR1B10(4), EPHX2(7), HSD3B7(3), RDH11(3), RDH12(6), RDH13(5), RDH14(3) 1650056 31 23 31 8 10 15 3 1 2 0 0.092 0.36 160 HSA00252_ALANINE_AND_ASPARTATE_METABOLISM Genes involved in alanine and aspartate metabolism AARS, AARS2, ABAT, ACY3, ADSL, ADSS, ADSSL1, AGXT, AGXT2, ASL, ASNS, ASPA, ASRGL1, ASS1, CAD, CRAT, DARS, DARS2, DDO, DLAT, DLD, GAD1, GAD2, GOT1, GOT2, GPT, GPT2, NARS, NARS2, PC, PDHA1, PDHA2, PDHB 32 AARS(10), AARS2(13), ABAT(9), ACY3(4), ADSL(7), ADSS(8), ADSSL1(6), AGXT(5), AGXT2(9), ASL(4), ASNS(9), ASPA(5), ASRGL1(2), ASS1(3), CAD(38), CRAT(3), DARS(4), DARS2(7), DDO(9), DLAT(2), DLD(7), GAD1(8), GAD2(12), GOT1(6), GOT2(5), GPT2(7), NARS(7), NARS2(7), PC(8), PDHA1(4), PDHA2(10), PDHB(7) 12629716 245 64 241 82 60 102 37 10 36 0 0.092 0.36 161 ST_TUMOR_NECROSIS_FACTOR_PATHWAY Tumor necrosis factor is a pro-inflammatory cytokine that activates NF-kB and c-Jun. BAG4, BIRC2, BIRC3, CASP3, CASP8, CFLAR, FADD, HRB, IKBKG, JUN, MAP2K4, MAP3K3, MAP3K7, NFKB1, NFKB2, NFKBIA, NFKBIB, NFKBIE, NFKBIL1, NFKBIL2, NR2C2, RALBP1, RIPK1, TNF, TNFAIP3, TNFRSF1A, TNFRSF1B, TRADD, TRAF2 25 BAG4(4), BIRC2(13), BIRC3(3), CASP3(4), CFLAR(7), FADD(1), JUN(1), MAP2K4(6), MAP3K3(9), MAP3K7(8), NFKB1(12), NFKB2(10), NFKBIA(3), NFKBIB(3), NFKBIE(6), NFKBIL1(2), NR2C2(8), RALBP1(7), RIPK1(8), TNF(1), TNFAIP3(2), TNFRSF1A(6), TNFRSF1B(3), TRAF2(5) 8563131 132 50 129 33 29 58 21 6 18 0 0.093 0.36 162 HSA00260_GLYCINE_SERINE_AND_THREONINE_METABOLISM Genes involved in glycine, serine and threonine metabolism ABP1, AGXT, AGXT2, AKR1B10, ALAS1, ALAS2, AMT, AOC2, AOC3, BHMT, CBS, CHDH, CHKA, CHKB, CTH, DAO, DLD, DMGDH, GAMT, GARS, GATM, GCAT, GLDC, GNMT, HSD3B7, MAOA, MAOB, PEMT, PHGDH, PIPOX, PISD, PSAT1, PSPH, RDH11, RDH12, RDH13, RDH14, SARDH, SARS, SARS2, SDS, SHMT1, SHMT2, TARS, TARS2 44 ABP1(12), AGXT(5), AGXT2(9), AKR1B10(4), ALAS1(12), ALAS2(11), AMT(5), AOC2(6), AOC3(14), BHMT(2), CBS(13), CHDH(5), CHKA(8), CTH(5), DAO(5), DLD(7), DMGDH(6), GARS(8), GATM(8), GLDC(20), GNMT(3), HSD3B7(3), MAOA(14), MAOB(7), PEMT(2), PHGDH(7), PIPOX(6), PISD(5), PSAT1(5), PSPH(1), RDH11(3), RDH12(6), RDH13(5), RDH14(3), SARDH(9), SARS(4), SARS2(7), SDS(3), SHMT1(6), SHMT2(8), TARS(10), TARS2(10) 14500847 292 61 284 87 80 123 40 12 35 2 0.097 0.37 163 NKTPATHWAY T cell differentiation into Th1 and Th2 cells occurs by differential chemokine receptor expression, which mediates tissue localization and immune response. CCL3, CCL4, CCR1, CCR2, CCR3, CCR4, CCR5, CCR7, CD28, CD4, CSF2, CXCR3, CXCR4, IFNG, IFNGR1, IFNGR2, IL12A, IL12B, IL12RB1, IL12RB2, IL18R1, IL2, IL4, IL4R, IL5, TGFB1, TGFB2, TGFB3, TNFSF5 27 CCL3(1), CCL4(1), CCR1(5), CCR2(6), CCR3(5), CCR4(5), CCR7(5), CD28(6), CD4(8), CXCR3(5), CXCR4(1), IFNG(5), IFNGR1(6), IFNGR2(4), IL12A(7), IL12B(3), IL12RB1(16), IL12RB2(11), IL18R1(5), IL2(4), IL4R(6), IL5(2), TGFB1(4), TGFB2(6), TGFB3(9) 6817236 136 47 134 45 27 63 15 8 23 0 0.098 0.37 164 G2PATHWAY Activated Cdc2-cyclin B kinase regulates the G2/M transition; DNA damage stimulates the DNA-PK/ATM/ATR kinases, which inactivate Cdc2. ATM, ATR, BRCA1, CCNB1, CDC2, CDC25A, CDC25B, CDC25C, CDC34, CDKN1A, CDKN2D, CHEK1, CHEK2, EP300, GADD45A, MDM2, MYT1, PLK, PRKDC, RPS6KA1, TP53, WEE1, YWHAH, YWHAQ 19 ATR(38), BRCA1(19), CCNB1(8), CDC25A(9), CDC25B(3), CDC25C(8), CDKN1A(1), CDKN2D(3), CHEK1(4), CHEK2(14), EP300(29), MDM2(6), PRKDC(70), RPS6KA1(5), WEE1(1), YWHAH(4), YWHAQ(3) 12550846 225 55 217 37 34 79 39 19 49 5 0.099 0.37 165 SLRPPATHWAY Small leucine-rich proteoglycans (SLRPs) interact with and reorganize collagen fibers in the extracellular matrix. BGN, DCN, DSPG3, FMOD, KERA, LUM 5 BGN(4), DCN(11), FMOD(5), KERA(8), LUM(12) 1308286 40 21 37 12 12 14 3 2 9 0 0.10 0.37 166 HSA00532_CHONDROITIN_SULFATE_BIOSYNTHESIS Genes involved in chondroitin sulfate biosynthesis B3GALT6, B3GAT1, B3GAT2, B3GAT3, B4GALT7, ChGn, CHPF, CHST11, CHST12, CHST13, CHST14, CHST3, CHST7, CHSY-2, CHSY1, CSGlcA-T, DSE, GALNAC4S-6ST, GALNACT-2, UST, XYLT1, XYLT2 15 B3GAT1(4), B3GAT2(1), B3GAT3(4), B4GALT7(4), CHPF(5), CHST11(9), CHST12(5), CHST14(2), CHST3(4), CHST7(4), CHSY1(1), DSE(17), UST(4), XYLT1(15), XYLT2(9) 4638512 88 36 86 40 24 39 15 2 8 0 0.10 0.37 167 ST_STAT3_PATHWAY The transcription factor STAT3 is involved in cell growth regulation and is commonly upregulated in tumors. CISH, IL6, IL6R, JAK1, JAK2, JAK3, PIAS3, PTPRU, REG1A, SRC, STAT3 10 IL6(2), IL6R(12), JAK2(21), JAK3(9), PIAS3(9), PTPRU(20), REG1A(4), SRC(2), STAT3(12) 4410984 91 36 89 24 20 37 13 3 12 6 0.10 0.38 168 CELL_CYCLE_KEGG ABL1, ASK, ATM, BUB1, BUB1B, BUB3, CCNA1, CCNA2, CCNB1, CCNB2, CCNB3, CCND2, CCND3, CCNE1, CCNE2, CCNH, CDAN1, CDC14A, CDC14B, CDC14B, CDC14C, CDC2, CDC20, CDC25A, CDC25B, CDC25C, CDC45L, CDC6, CDC7, CDH1, CDK2, CDK4, CDKN1A, CDKN2A, CHEK1, CHEK2, DTX4, E2F1, E2F2, E2F3, E2F4, E2F5, E2F6, EP300, ESPL1, FLJ14001, GADD45A, GSK3B, HDAC1, HDAC2, HDAC3, HDAC4, HDAC5, HDAC6, HDAC7A, HDAC8, MAD1L1, MAD2L1, MAD2L2, MCM2, MCM3, MCM4, MCM5, MCM6, MCM7, MDM2, MPEG1, MPL, ORC1L, ORC2L, ORC3L, ORC4L, ORC5L, ORC6L, PCNA, PLK1, PRKDC, PTPRA, PTTG1, PTTG2, PTTG3, RB1, RBL1, SKP2, SMAD4, SMC1L1, TBC1D8, TFDP1, TGFB1, TP53, WEE1 78 ABL1(9), BUB1(9), BUB1B(6), BUB3(5), CCNA1(4), CCNA2(3), CCNB1(8), CCNB2(4), CCNB3(20), CCND2(7), CCND3(5), CCNE2(6), CCNH(3), CDAN1(12), CDC14A(8), CDC14B(6), CDC20(5), CDC25A(9), CDC25B(3), CDC25C(8), CDC6(3), CDC7(13), CDH1(15), CDK2(5), CDK4(4), CDKN1A(1), CDKN2A(1), CHEK1(4), CHEK2(14), DTX4(7), E2F2(1), E2F3(5), E2F4(3), E2F5(1), E2F6(3), EP300(29), ESPL1(10), GSK3B(11), HDAC1(4), HDAC2(5), HDAC3(10), HDAC4(18), HDAC5(15), HDAC6(22), HDAC8(3), MAD1L1(15), MAD2L1(5), MAD2L2(3), MCM2(10), MCM3(9), MCM4(9), MCM5(12), MCM6(9), MCM7(5), MDM2(6), MPEG1(13), MPL(5), PCNA(3), PLK1(6), PRKDC(70), PTPRA(11), PTTG1(5), PTTG2(1), RBL1(17), SKP2(6), SMAD4(5), TBC1D8(12), TGFB1(4), WEE1(1) 35572760 589 93 570 153 134 269 70 25 82 9 0.10 0.38 169 RIBOFLAVIN_METABOLISM ACP1, ACP2, ACP5, ACPP, ACPT, ENPP1, ENPP3, FLAD1, RFK, TYR 10 ACP1(4), ACP2(2), ACP5(4), ACPP(5), ACPT(7), ENPP1(11), ENPP3(16), FLAD1(8), RFK(2), TYR(10) 3401209 69 32 69 20 17 26 15 6 5 0 0.10 0.38 170 RASPATHWAY Ras activation stimulates many signaling cascades, including PI3K/AKT activation to inhibit apoptosis. AKT1, ARHA, BAD, BCL2L1, CASP9, CDC42, CHUK, ELK1, H2AFX, HRAS, MAP2K1, MAPK3, MLLT7, NFKB1, PIK3CA, PIK3R1, RAC1, RAF1, RALA, RALBP1, RALGDS, RELA, RHOA 19 AKT1(8), BAD(2), BCL2L1(3), CASP9(3), CDC42(5), CHUK(11), ELK1(2), H2AFX(1), MAP2K1(2), MAPK3(4), NFKB1(12), RAF1(7), RALA(4), RALBP1(7), RALGDS(10), RELA(6), RHOA(4) 5158815 91 38 86 16 18 42 16 4 11 0 0.11 0.38 171 CERAMIDEPATHWAY Ceramide is a lipid signaling molecule that can activate proliferative or apoptotic pathways, depending on signaling context, localization, and cell type. BAD, BAX, BCL2, CASP8, CYCS, FADD, MAP2K1, MAP2K4, MAP3K1, MAPK1, MAPK3, MAPK8, NFKB1, NSMAF, PDCD8, RAF1, RELA, RIPK1, SMPD1, TNFRSF1A, TRADD, TRAF2 18 BAD(2), BAX(4), CYCS(3), FADD(1), MAP2K1(2), MAP2K4(6), MAPK1(2), MAPK3(4), MAPK8(7), NFKB1(12), NSMAF(11), RAF1(7), RELA(6), RIPK1(8), SMPD1(12), TNFRSF1A(6), TRAF2(5) 5621519 98 41 97 18 17 36 22 5 18 0 0.11 0.38 172 IL1RPATHWAY The cytokine IL-1 stimulates its primary receptor, IL-1R1, which induces transcription of inflammation-related genes such as interferons. CHUK, IFNA1, IFNB1, IKBKB, IL1A, IL1B, IL1R1, IL1RAP, IL1RN, IL6, IRAK1, IRAK2, IRAK3, JUN, MAP2K3, MAP2K6, MAP3K1, MAP3K14, MAP3K7, MAP3K7IP1, MAPK14, MAPK8, MYD88, NFKB1, NFKBIA, RELA, SITPEC, TGFB1, TGFB2, TGFB3, TNF, TOLLIP, TRAF6 29 CHUK(11), IFNB1(4), IKBKB(15), IL1A(1), IL1B(2), IL1R1(5), IL1RAP(2), IL1RN(1), IL6(2), IRAK1(5), IRAK2(7), IRAK3(13), JUN(1), MAP2K3(8), MAP2K6(9), MAP3K14(12), MAP3K7(8), MAPK14(6), MAPK8(7), MYD88(1), NFKB1(12), NFKBIA(3), RELA(6), TGFB1(4), TGFB2(6), TGFB3(9), TNF(1), TRAF6(4) 9072918 165 49 161 43 31 77 28 9 20 0 0.11 0.38 173 RNA_POLYMERASE POLR1B, POLR2A, POLR2B, POLR2C, POLR2D, POLR2E, POLR2F, POLR2G, POLR2H, POLR2I, POLR2J, POLR2K, POLR2L, POLRMT 13 POLR1B(16), POLR2A(25), POLR2B(20), POLR2C(5), POLR2D(3), POLR2E(1), POLR2F(2), POLR2H(3), POLR2K(2) 3981262 77 35 76 25 19 31 7 6 14 0 0.11 0.38 174 STRIATED_MUSCLE_CONTRACTION ACTA1, ACTA2, ACTC, ACTN2, ACTN3, ACTN4, C9orf97, DES, DES, FAM48A, DMD, MYBPC1, MYBPC2, MYBPC3, MYH3, MYH6, MYH6, MYH7, MYH8, MYL1, MYL2, MYL3, MYL4, MYL9, MYOM1, NEB, TCAP, TMOD1, TNNC2, TNNI1, TNNI2, TNNI3, TNNT1, TNNT2, TNNT3, TPM1, TPM2, TPM3, TPM4, TPM4, TTN, VIM 35 ACTA1(4), ACTA2(7), ACTN2(9), ACTN3(10), ACTN4(11), DES(5), DMD(83), FAM48A(7), MYBPC1(20), MYBPC2(9), MYBPC3(14), MYH3(30), MYH6(23), MYH7(28), MYH8(35), MYL1(7), MYL2(1), MYL4(1), MYL9(3), MYOM1(34), NEB(127), TMOD1(2), TNNC2(4), TNNI1(1), TNNI3(5), TNNT1(5), TNNT2(8), TPM1(2), TPM2(1), TPM3(6), TPM4(6), TTN(652), VIM(8) 49100638 1168 105 1133 243 337 414 192 62 64 99 0.11 0.40 175 EGFPATHWAY The epidermal growth factor (EGF) peptide stimulates the EGF receptor to promote cell proliferation via the MAP kinase and Ras pathways. CSNK2A1, EGF, EGFR, ELK1, FOS, GRB2, HRAS, JAK1, JUN, MAP2K1, MAP2K4, MAP3K1, MAPK3, MAPK8, PIK3CA, PIK3R1, PLCG1, PRKCA, PRKCB1, RAF1, RASA1, SHC1, SOS1, SRF, STAT1, STAT3, STAT5A 21 CSNK2A1(9), EGF(24), EGFR(20), ELK1(2), FOS(6), GRB2(3), JUN(1), MAP2K1(2), MAP2K4(6), MAPK3(4), MAPK8(7), PLCG1(12), PRKCA(10), RAF1(7), SHC1(11), SOS1(21), SRF(3), STAT1(14), STAT3(12), STAT5A(5) 9237350 179 52 172 46 52 68 26 10 21 2 0.11 0.40 176 HSA04720_LONG_TERM_POTENTIATION Genes involved in long-term potentiation ADCY1, ADCY8, ARAF, ATF4, BRAF, CACNA1C, CALM1, CALM2, CALM3, CALML3, CALML6, CAMK2A, CAMK2B, CAMK2D, CAMK2G, CAMK4, CHP, CREBBP, EP300, GNAQ, GRIA1, GRIA2, GRIN1, GRIN2A, GRIN2B, GRIN2C, GRIN2D, GRM1, GRM5, HRAS, ITPR1, ITPR2, ITPR3, KRAS, MAP2K1, MAP2K2, MAPK1, MAPK3, NRAS, PLCB1, PLCB2, PLCB3, PLCB4, PPP1CA, PPP1CB, PPP1CC, PPP1R12A, PPP1R1A, PPP3CA, PPP3CB, PPP3CC, PPP3R1, PPP3R2, PRKACA, PRKACB, PRKACG, PRKCA, PRKCB1, PRKCG, PRKX, PRKY, RAF1, RAP1A, RAP1B, RAPGEF3, RPS6KA1, RPS6KA2, RPS6KA3, RPS6KA6 64 ADCY1(17), ADCY8(16), ARAF(8), ATF4(4), BRAF(12), CACNA1C(30), CALM2(3), CALM3(1), CALML6(4), CAMK2A(8), CAMK2B(2), CAMK2D(7), CAMK2G(8), CAMK4(5), CREBBP(37), EP300(29), GRIA1(12), GRIA2(25), GRIN1(5), GRIN2A(25), GRIN2B(23), GRIN2C(6), GRIN2D(8), GRM1(22), GRM5(22), ITPR1(31), ITPR2(38), ITPR3(23), MAP2K1(2), MAPK1(2), MAPK3(4), PLCB1(6), PLCB2(9), PLCB3(9), PLCB4(20), PPP1CA(6), PPP1CB(7), PPP1CC(2), PPP1R12A(12), PPP1R1A(4), PPP3CA(4), PPP3CB(7), PPP3CC(6), PPP3R1(2), PPP3R2(1), PRKACA(4), PRKACB(2), PRKACG(6), PRKCA(10), PRKCG(10), PRKX(4), RAF1(7), RAP1A(3), RAP1B(2), RAPGEF3(11), RPS6KA1(5), RPS6KA2(16), RPS6KA3(17), RPS6KA6(15) 34475033 646 92 629 214 156 258 115 25 90 2 0.12 0.41 177 SIG_REGULATION_OF_THE_ACTIN_CYTOSKELETON_BY_RHO_GTPASES Genes related to regulation of the actin cytoskeleton ACTG1, ACTG2, ACTR2, ACTR3, AKT1, ANGPTL2, CDC42, CFL1, CFL2, FLNA, FLNC, FSCN1, FSCN2, FSCN3, GDI1, GDI2, LIMK1, MYH2, MYLK, MYLK2, PAK1, PAK2, PAK3, PAK4, PAK6, PAK7, PFN1, PFN2, RHO, ROCK1, ROCK2, RPS4X, VASP, WASF1, WASL 34 ACTG2(1), ACTR2(7), ACTR3(3), AKT1(8), ANGPTL2(9), CDC42(5), CFL1(1), CFL2(8), FLNA(31), FLNC(34), FSCN1(2), FSCN3(5), GDI1(4), GDI2(3), LIMK1(7), MYH2(37), MYLK(17), MYLK2(7), PAK1(3), PAK2(6), PAK3(14), PAK4(2), PAK6(3), PAK7(12), PFN1(1), PFN2(3), RHO(8), ROCK1(27), ROCK2(15), RPS4X(4), VASP(2), WASF1(3), WASL(8) 16003679 300 66 292 84 89 121 33 10 45 2 0.12 0.41 178 HSA00272_CYSTEINE_METABOLISM Genes involved in cysteine metabolism CARS, CARS2, CDO1, CTH, GOT1, GOT2, LDHA, LDHAL6A, LDHAL6B, LDHB, LDHC, MPST, SDS, SULT1B1, SULT1C2, SULT1C4, SULT4A1 16 CARS(10), CARS2(1), CDO1(4), CTH(5), GOT1(6), GOT2(5), LDHA(6), LDHAL6A(8), LDHAL6B(2), LDHB(2), LDHC(3), SDS(3), SULT1B1(4), SULT1C2(7), SULT1C4(4), SULT4A1(3) 4208312 73 37 68 35 20 23 10 6 14 0 0.12 0.41 179 BIOSYNTHESIS_OF_STEROIDS DHCR7, FDFT1, FDPS, FDPS, LOC402397, HMGCR, IDI1, LSS, MVD, MVK, NQO1, NQO2, PMVK, SC5DL, SQLE, VKORC1 14 DHCR7(4), FDFT1(3), FDPS(7), HMGCR(15), IDI1(4), MVD(3), MVK(7), NQO1(3), NQO2(4), PMVK(2), SC5DL(3), SQLE(6), VKORC1(3) 3405750 64 32 62 27 13 24 9 7 11 0 0.12 0.42 180 VOBESITYPATHWAY The adipose tissue of obese individuals overexpresses a key glucocorticoid-metabolizing enzyme, activating inactive circulating corticosteroids and inducing insulin resistance. APM1, HSD11B1, LPL, NR3C1, PPARG, RETN, RXRA, TNF 7 HSD11B1(4), LPL(11), NR3C1(13), PPARG(5), RETN(2), RXRA(1), TNF(1) 1975096 37 23 35 10 13 12 2 2 8 0 0.12 0.42 181 HSA04360_AXON_GUIDANCE Genes involved in axon guidance ABL1, ABLIM1, ABLIM2, ABLIM3, ARHGEF12, CDC42, CDK5, CFL1, CFL2, CHP, CXCL12, CXCR4, DCC, DPYSL2, DPYSL5, EFNA1, EFNA2, EFNA3, EFNA4, EFNA5, EFNB1, EFNB2, EFNB3, EPHA1, EPHA2, EPHA3, EPHA4, EPHA5, EPHA6, EPHA7, EPHA8, EPHB1, EPHB2, EPHB3, EPHB4, EPHB6, FES, FYN, GNAI1, GNAI2, GNAI3, GSK3B, HRAS, ITGB1, KRAS, L1CAM, LIMK1, LIMK2, LRRC4C, MAPK1, MAPK3, MET, NCK1, NCK2, NFAT5, NFATC1, NFATC2, NFATC3, NFATC4, NGEF, NRAS, NRP1, NTN1, NTN2L, NTN4, NTNG1, PAK1, PAK2, PAK3, PAK4, PAK6, PAK7, PLXNA1, PLXNA2, PLXNA3, PLXNB1, PLXNB2, PLXNB3, PLXNC1, PPP3CA, PPP3CB, PPP3CC, PPP3R1, PPP3R2, PTK2, RAC1, RAC2, RAC3, RASA1, RGS3, RHOA, RHOD, RND1, ROBO1, ROBO2, ROBO3, ROCK1, ROCK2, SEMA3A, SEMA3B, SEMA3C, SEMA3D, SEMA3E, SEMA3F, SEMA3G, SEMA4A, SEMA4B, SEMA4C, SEMA4D, SEMA4F, SEMA4G, SEMA5A, SEMA5B, SEMA6A, SEMA6B, SEMA6C, SEMA6D, SEMA7A, SLIT1, SLIT2, SLIT3, SRGAP1, SRGAP2, SRGAP3, UNC5A, UNC5B, UNC5C, UNC5D 115 ABL1(9), ABLIM1(8), ABLIM2(5), ABLIM3(9), ARHGEF12(25), CDC42(5), CDK5(1), CFL1(1), CFL2(8), CXCL12(3), CXCR4(1), DPYSL2(11), DPYSL5(5), EFNA1(2), EFNA3(1), EFNA4(3), EFNA5(1), EFNB1(7), EFNB3(2), EPHA1(14), EPHA2(5), EPHA3(14), EPHA4(17), EPHA6(21), EPHA7(9), EPHA8(12), EPHB1(25), EPHB2(10), EPHB3(6), EPHB4(4), EPHB6(10), FES(16), FYN(7), GNAI1(4), GNAI2(7), GNAI3(3), GSK3B(11), ITGB1(12), L1CAM(16), LIMK1(7), LRRC4C(9), MAPK1(2), MAPK3(4), MET(10), NCK1(4), NCK2(8), NFAT5(13), NFATC2(15), NFATC3(12), NFATC4(8), NGEF(13), NRP1(16), NTN1(4), NTN4(5), NTNG1(11), PAK1(3), PAK2(6), PAK3(14), PAK4(2), PAK6(3), PAK7(12), PLXNA1(22), PLXNA2(29), PLXNA3(19), PLXNB1(12), PLXNC1(29), PPP3CA(4), PPP3CB(7), PPP3CC(6), PPP3R1(2), PPP3R2(1), PTK2(11), RAC2(2), RGS3(15), RHOA(4), RHOD(3), RND1(7), ROBO1(25), ROBO2(27), ROBO3(16), ROCK1(27), ROCK2(15), SEMA3A(10), SEMA3B(8), SEMA3C(10), SEMA3D(9), SEMA3E(8), SEMA3F(6), SEMA3G(5), SEMA4A(7), SEMA4B(5), SEMA4C(8), SEMA4D(12), SEMA4F(15), SEMA4G(10), SEMA5A(19), SEMA5B(13), SEMA6A(13), SEMA6C(7), SEMA6D(23), SEMA7A(11), SLIT1(11), SLIT2(30), SLIT3(21), SRGAP1(21), SRGAP2(18), SRGAP3(13), UNC5B(9), UNC5C(8), UNC5D(14) 60562600 1138 110 1103 373 312 436 165 50 165 10 0.12 0.42 182 HSA00512_O_GLYCAN_BIOSYNTHESIS Genes involved in O-glycan biosynthesis B3GNT6, B4GALT5, C1GALT1, C1GALT1C1, GALNT1, GALNT10, GALNT11, GALNT12, GALNT13, GALNT14, GALNT17, GALNT2, GALNT3, GALNT4, GALNT5, GALNT6, GALNT7, GALNT8, GALNT9, GALNTL1, GALNTL2, GALNTL4, GALNTL5, GCNT1, GCNT3, GCNT4, OGT, ST3GAL1, ST3GAL2, ST6GALNAC1, WBSCR17 28 B4GALT5(2), C1GALT1(4), C1GALT1C1(5), GALNT1(8), GALNT10(5), GALNT11(14), GALNT12(2), GALNT14(11), GALNT2(8), GALNT3(10), GALNT4(8), GALNT5(7), GALNT6(2), GALNT7(11), GALNT8(13), GALNTL1(12), GALNTL2(13), GALNTL4(6), GALNTL5(10), GCNT1(8), GCNT3(7), GCNT4(1), OGT(19), ST3GAL1(2), ST3GAL2(4), ST6GALNAC1(4), WBSCR17(14) 10764560 210 59 202 68 51 84 38 12 25 0 0.13 0.42 183 TIDPATHWAY On ligand binding, interferon gamma receptors stimulate JAK2 kinase to phosphorylate STAT transcription factors, which promote expression of interferon responsive genes. DNAJA3, HSPA1A, IFNG, IFNGR1, IFNGR2, IKBKB, JAK2, LIN7A, NFKB1, NFKBIA, RB1, RELA, TIP-1, TNF, TNFRSF1A, TNFRSF1B, TP53, USH1C, WT1 15 DNAJA3(7), IFNG(5), IFNGR1(6), IFNGR2(4), IKBKB(15), JAK2(21), LIN7A(8), NFKB1(12), NFKBIA(3), RELA(6), TNF(1), TNFRSF1A(6), TNFRSF1B(3), USH1C(10), WT1(3) 5231471 110 39 108 38 18 40 24 6 16 6 0.13 0.42 184 MRPPATHWAY Cancer cells resistant to numerous drugs are called multidrug-resistant (MDR) and express ATP-binding cassette transporter proteins that pump the drugs out of cells. ABCB1, ABCB11, ABCB4, ABCC1, ABCC3, GSTP1 6 ABCB1(28), ABCB11(18), ABCB4(29), ABCC1(23), ABCC3(14), GSTP1(2) 5203986 114 39 110 39 39 34 12 7 20 2 0.13 0.43 185 BIOPEPTIDESPATHWAY Extracellular signaling peptides exert biological effects via G-protein coupled receptors (GPCRs), which activate intracellular GTPases. AGT, AGTR2, BDK, CALM1, CALM2, CALM3, CAMK2A, CAMK2B, CAMK2D, CAMK2G, CDK5, F2, FYN, GNA11, GNAI1, GNB1, GNGT1, GRB2, HRAS, JAK2, MAP2K1, MAP2K2, MAPK1, MAPK14, MAPK3, MAPK8, MAPT, MYLK, PLCG1, PRKCA, PRKCB1, PTK2B, RAF1, SHC1, SOS1, STAT1, STAT3, STAT5A, SYT1 36 AGT(7), AGTR2(8), CALM2(3), CALM3(1), CAMK2A(8), CAMK2B(2), CAMK2D(7), CAMK2G(8), CDK5(1), F2(9), FYN(7), GNA11(3), GNAI1(4), GNB1(3), GRB2(3), JAK2(21), MAP2K1(2), MAPK1(2), MAPK14(6), MAPK3(4), MAPK8(7), MAPT(11), MYLK(17), PLCG1(12), PRKCA(10), PTK2B(16), RAF1(7), SHC1(11), SOS1(21), STAT1(14), STAT3(12), STAT5A(5), SYT1(4) 14175090 256 65 248 73 66 103 35 13 31 8 0.13 0.43 186 GLYCOLYSISPATHWAY Glycolysis is an evolutionarily conserved pathway by which one glucose molecule is converted to two pyruvate molecules for a gain of 2 ATP. ALDOB, ENO1, GAPD, GPI, HK1, PFKL, PGAM1, PGK1, PKLR, TPI1 8 ALDOB(9), ENO1(5), GPI(9), HK1(13), PGAM1(2), PGK1(6), PKLR(10), TPI1(1) 2575703 55 27 53 14 16 22 4 3 8 2 0.13 0.43 187 SMALL_LIGAND_GPCRS C9orf47, CNR1, CNR2, DNMT1, EDG1, EDG2, EDG5, EDG6, MTNR1A, MTNR1B, PTAFR, PTGDR, PTGER1, PTGER2, PTGER4, PTGFR, PTGIR, TBXA2R 11 CNR1(8), CNR2(3), DNMT1(15), MTNR1A(6), MTNR1B(4), PTAFR(6), PTGDR(6), PTGER2(5), PTGER4(8), PTGFR(10), PTGIR(3) 3471953 74 36 70 28 18 36 12 4 4 0 0.13 0.43 188 PGC1APATHWAY PCG-1a is expressed in skeletal muscle, heart muscle, and brown fat, and is a coactivator for receptors such as glucocorticoid receptor and thyroid hormone receptor. CALM1, CALM2, CALM3, CAMK1, CAMK1G, CAMK2A, CAMK2B, CAMK2D, CAMK2G, CAMK4, ESRRA, HDAC5, MEF2A, MEF2B, MEF2C, MEF2D, PPARA, PPARGC1, PPP3CA, PPP3CB, PPP3CC, SLC2A4, SYT1, YWHAH 23 CALM2(3), CALM3(1), CAMK1(9), CAMK1G(5), CAMK2A(8), CAMK2B(2), CAMK2D(7), CAMK2G(8), CAMK4(5), ESRRA(2), HDAC5(15), MEF2A(5), MEF2B(3), MEF2C(11), MEF2D(7), PPARA(2), PPP3CA(4), PPP3CB(7), PPP3CC(6), SLC2A4(4), SYT1(4), YWHAH(4) 6774216 122 42 120 37 28 52 16 4 22 0 0.13 0.43 189 HSA00511_N_GLYCAN_DEGRADATION Genes involved in N-glycan degradation AGA, FLJ21865, FUCA1, FUCA2, GLB1, HEXA, HEXB, LCT, MAN2B1, MAN2B2, MAN2C1, MANBA, NEU1, NEU2, NEU3, NEU4 14 AGA(4), FUCA1(3), FUCA2(3), GLB1(9), HEXA(3), HEXB(4), LCT(30), MAN2B1(20), MAN2B2(9), MAN2C1(8), MANBA(14), NEU2(5), NEU3(3) 6820343 115 47 112 33 32 51 15 6 11 0 0.13 0.43 190 KERATINOCYTEPATHWAY Keratinocyte differentiation, which models the differentiation of epidermal cells, requires the four main MAP kinase pathways. BCL2, CEBPA, CHUK, DAXX, EGF, EGFR, ETS1, ETS2, FOS, HOXA7, HRAS, IKBKB, JUN, MAP2K1, MAP2K3, MAP2K4, MAP2K6, MAP2K7, MAP3K1, MAP3K14, MAP3K5, MAPK1, MAPK13, MAPK14, MAPK3, MAPK8, NFKB1, NFKBIA, PPP2CA, PRKCA, PRKCB1, PRKCD, PRKCE, PRKCG, PRKCH, PRKCQ, RAF1, RELA, RIPK1, SP1, TNF, TNFRSF1A, TNFRSF1B, TNFRSF6, TNFSF6, TRAF2 40 CHUK(11), DAXX(11), EGF(24), EGFR(20), ETS1(6), ETS2(5), FOS(6), HOXA7(8), IKBKB(15), JUN(1), MAP2K1(2), MAP2K3(8), MAP2K4(6), MAP2K6(9), MAP3K14(12), MAP3K5(21), MAPK1(2), MAPK13(2), MAPK14(6), MAPK3(4), MAPK8(7), NFKB1(12), NFKBIA(3), PPP2CA(6), PRKCA(10), PRKCD(7), PRKCE(11), PRKCG(10), PRKCH(9), PRKCQ(13), RAF1(7), RELA(6), RIPK1(8), SP1(6), TNF(1), TNFRSF1A(6), TNFRSF1B(3), TRAF2(5) 15697520 309 64 304 92 70 131 54 17 37 0 0.14 0.44 191 ALKPATHWAY Activin receptor-like kinase 3 (ALK3) is required during gestation for cardiac muscle development. ACVR1, APC, ATF2, AXIN1, BMP10, BMP2, BMP4, BMP5, BMP7, BMPR1A, BMPR2, CHRD, CTNNB1, DVL1, FZD1, GATA4, GSK3B, MADH1, MADH4, MADH5, MADH6, MAP3K7, MEF2C, MYL2, NKX2-5, NOG, NPPA, NPPB, RFC1, TCF1, TGFB1, TGFB2, TGFB3, TGFBR1, TGFBR2, TGFBR3, WNT1 26 ACVR1(9), ATF2(6), AXIN1(8), BMP10(6), BMP2(5), BMP4(7), BMPR1A(8), BMPR2(14), CHRD(14), FZD1(2), GATA4(1), GSK3B(11), MAP3K7(8), MEF2C(11), MYL2(1), NOG(1), NPPA(1), NPPB(2), RFC1(15), TGFB1(4), TGFB2(6), TGFB3(9), TGFBR1(8), TGFBR2(6), TGFBR3(8), WNT1(1) 8726368 172 52 169 37 45 78 27 6 16 0 0.14 0.44 192 AKAP13PATHWAY A-kinase anchor protein 13 (AKAP13) localizes protein kinase A holoenzyme and is a nucleotide exchange factor for Rho/Rac. AKAP13, ARHA, EDG2, EDG4, EDG7, GNA12, PRKACB, PRKACG, PRKAG1, PRKAR2A, PRKAR2B 7 AKAP13(32), GNA12(10), PRKACB(2), PRKACG(6), PRKAG1(2), PRKAR2A(4), PRKAR2B(5) 3482708 61 34 58 17 12 29 5 4 11 0 0.14 0.44 193 PS1PATHWAY Presenilin is required for gamma-secretase activity to activate Notch signaling; presenilin also inhibits beta-catenin in the Wnt/Frizzled pathway. ADAM17, APC, AXIN1, BTRC, CTNNB1, DLL1, DVL1, FZD1, GSK3B, NOTCH1, PSEN1, RBPSUH, TCF1, WNT1 8 ADAM17(11), AXIN1(8), BTRC(13), DLL1(8), FZD1(2), GSK3B(11), PSEN1(4), WNT1(1) 2823546 58 28 57 25 13 30 6 3 6 0 0.14 0.46 194 GLYCINE_SERINE_AND_THREONINE_METABOLISM ABP1, AGXT, AGXT2, ALAS1, ALAS2, AMT, AOC2, AOC3, ATP6V0C, SHMT1, BHMT, CBS, CHDH, CHKA, CHKB, CHKB, CPT1B, CTH, DAO, DLD, DMGDH, GAMT, GARS, GATM, GCAT, GLDC, MAOA, MAOB, PEMT, PISD, PLCB2, PLCG1, PLCG2, PSPH, SARDH, SARS, SHMT1, SHMT2, TARS 36 ABP1(12), AGXT(5), AGXT2(9), ALAS1(12), ALAS2(11), AMT(5), AOC2(6), AOC3(14), ATP6V0C(2), BHMT(2), CBS(13), CHDH(5), CHKA(8), CTH(5), DAO(5), DLD(7), DMGDH(6), GARS(8), GATM(8), GLDC(20), MAOA(14), MAOB(7), PEMT(2), PISD(5), PLCB2(9), PLCG1(12), PLCG2(27), PSPH(1), SARDH(9), SARS(4), SHMT1(6), SHMT2(8), TARS(10) 14110560 277 61 268 77 75 111 37 15 37 2 0.14 0.46 195 HSA04320_DORSO_VENTRAL_AXIS_FORMATION Genes involved in dorso-ventral axis formation BRAF, CPEB1, EGFR, ERBB2, ERBB4, ETS1, ETS2, ETV6, ETV7, FMN2, GRB2, KRAS, MAP2K1, MAPK1, MAPK3, NOTCH1, NOTCH2, NOTCH3, NOTCH4, PIWIL1, PIWIL2, PIWIL3, PIWIL4, RAF1, SOS1, SOS2, SPIRE1, SPIRE2 25 BRAF(12), CPEB1(10), EGFR(20), ERBB2(6), ERBB4(29), ETS1(6), ETS2(5), ETV6(9), ETV7(4), FMN2(22), GRB2(3), MAP2K1(2), MAPK1(2), MAPK3(4), NOTCH2(17), NOTCH3(31), NOTCH4(15), PIWIL1(17), PIWIL2(16), PIWIL3(7), PIWIL4(13), RAF1(7), SOS1(21), SOS2(22), SPIRE1(9) 16034510 309 70 299 55 67 136 49 18 33 6 0.15 0.46 196 HSA00521_STREPTOMYCIN_BIOSYNTHESIS Genes involved in streptomycin biosynthesis GCK, HK1, HK2, HK3, IMPA1, IMPA2, ISYNA1, PGM1, PGM3, TGDS 9 GCK(5), HK1(13), HK2(8), HK3(12), IMPA1(4), IMPA2(6), PGM1(9), PGM3(6), TGDS(3) 3699003 66 32 64 25 20 24 9 5 8 0 0.15 0.47 197 EPOPATHWAY Erythropoietin, which activates the MAPK pathway, stimulates erythrocyte production and is an effective treatment for anemia. CSNK2A1, ELK1, EPO, EPOR, FOS, GRB2, HRAS, JAK2, JUN, MAP2K1, MAPK3, MAPK8, PLCG1, PTPN6, RAF1, SHC1, SOS1, STAT5A, STAT5B 19 CSNK2A1(9), ELK1(2), EPO(2), EPOR(4), FOS(6), GRB2(3), JAK2(21), JUN(1), MAP2K1(2), MAPK3(4), MAPK8(7), PLCG1(12), RAF1(7), SHC1(11), SOS1(21), STAT5A(5), STAT5B(5) 7451064 122 44 116 24 34 42 15 9 14 8 0.15 0.47 198 SETPATHWAY Cytotoxic T cells release perforin, which to allow entry into target cells of granzyme B, which activates caspases, and granzyme A, which induces caspase-independent apoptosis. ANP32A, APEX1, CREBBP, DFFA, DFFB, GZMA, GZMB, HMGB2, NME1, PRF1, SET 11 ANP32A(5), APEX1(3), CREBBP(37), DFFA(1), DFFB(3), GZMA(6), GZMB(2), HMGB2(3), PRF1(8), SET(6) 3605076 74 33 72 23 18 29 7 5 15 0 0.15 0.47 199 HSA00770_PANTOTHENATE_AND_COA_BIOSYNTHESIS Genes involved in pantothenate and CoA biosynthesis BCAT1, BCAT2, COASY, DPYD, DPYS, ENPP1, ENPP3, ILVBL, PANK1, PANK2, PANK3, PANK4, PPCDC, PPCS, UPB1, VNN1 16 BCAT1(9), BCAT2(6), COASY(11), DPYD(16), DPYS(3), ENPP1(11), ENPP3(16), ILVBL(7), PANK1(3), PANK2(8), PANK3(7), PANK4(8), PPCDC(1), PPCS(4), UPB1(9), VNN1(7) 5766114 126 42 124 32 32 48 20 6 20 0 0.16 0.48 200 C21_STEROID_HORMONE_METABOLISM AKR1C4, AKR1D1, CYP11A1, CYP11B1, CYP11B2, CYP17A1, CYP21A2, HSD11B1, HSD11B2, HSD3B1, HSD3B2 11 AKR1C4(5), AKR1D1(8), CYP11A1(10), CYP11B1(6), CYP11B2(7), CYP17A1(3), CYP21A2(7), HSD11B1(4), HSD3B1(1), HSD3B2(5) 3168901 56 29 55 21 8 30 7 3 8 0 0.16 0.48 201 HSA00140_C21_STEROID_HORMONE_METABOLISM Genes involved in C21-steroid hormone metabolism AKR1C4, AKR1D1, CYP11A1, CYP11B1, CYP11B2, CYP17A1, CYP21A2, HSD11B1, HSD11B2, HSD3B1, HSD3B2 11 AKR1C4(5), AKR1D1(8), CYP11A1(10), CYP11B1(6), CYP11B2(7), CYP17A1(3), CYP21A2(7), HSD11B1(4), HSD3B1(1), HSD3B2(5) 3168901 56 29 55 21 8 30 7 3 8 0 0.16 0.48 202 BBCELLPATHWAY Fas ligand expression by T cells induces apoptosis in Fas-expressing, inactive B cells. CD28, CD4, HLA-DRA, HLA-DRB1, TNFRSF5, TNFRSF6, TNFSF5, TNFSF6 4 CD28(6), CD4(8), HLA-DRB1(1) 866136 15 11 15 5 2 9 0 0 4 0 0.16 0.48 203 ERBB3PATHWAY Neuregulins bind to the receptor tyrosine kinases ErbB3 and ErbB4, surface-localized receptors whose overexpression induces tumor formation. EGF, EGFR, ERBB3, NRG1, UBE2D1 5 EGF(24), EGFR(20), ERBB3(16), NRG1(25) 3597189 85 35 82 17 23 36 13 6 7 0 0.16 0.48 204 TOB1PATHWAY TGF-beta signaling activates SMADs, which interact with intracellular Tob to maintain unstimulated T cells by repressing IL-2 expression. CD28, CD3D, CD3E, CD3G, CD3Z, IFNG, IL2, IL2RA, IL4, MADH3, MADH4, TGFB1, TGFB2, TGFB3, TGFBR1, TGFBR2, TGFBR3, TOB1, TOB2, TRA@, TRB@ 16 CD28(6), CD3D(3), CD3E(2), CD3G(2), IFNG(5), IL2(4), IL2RA(3), TGFB1(4), TGFB2(6), TGFB3(9), TGFBR1(8), TGFBR2(6), TGFBR3(8), TOB1(2), TOB2(6) 3716928 74 33 74 25 16 33 11 6 8 0 0.16 0.48 205 STATIN_PATHWAY_PHARMGKB ABCA1, APOA1, APOA1, LOC440837, APOA4, APOC1, APOC2, APOC3, APOC3, LOC440838, APOE, CETP, CYP7A1, DGAT1, HMGCR, LCAT, LDLR, LIPC, LPL, LRP1, SCARB1, SOAT1 14 ABCA1(30), APOC1(1), APOE(1), CETP(6), CYP7A1(12), HMGCR(15), LCAT(2), LDLR(12), LIPC(8), LPL(11), LRP1(53), SCARB1(8), SOAT1(10) 8783728 169 54 166 43 53 67 26 8 15 0 0.16 0.49 206 HSA00592_ALPHA_LINOLENIC_ACID_METABOLISM Genes involved in alpha-Linolenic acid metabolism ACOX1, ACOX3, FADS2, PLA2G10, PLA2G12A, PLA2G12B, PLA2G1B, PLA2G2A, PLA2G2D, PLA2G2E, PLA2G2F, PLA2G3, PLA2G4A, PLA2G5, PLA2G6 15 ACOX1(4), ACOX3(8), FADS2(2), PLA2G10(1), PLA2G12A(1), PLA2G12B(3), PLA2G1B(1), PLA2G2D(2), PLA2G2E(3), PLA2G2F(3), PLA2G3(5), PLA2G4A(11), PLA2G5(2), PLA2G6(6) 3392127 52 31 52 22 10 23 7 3 9 0 0.16 0.49 207 TYROSINE_METABOLISM ABP1, ADH1A, ADH1A, ADH1B, ADH1C, ADH1B, ADH1C, ADH4, ADH6, ADH7, ADHFE1, ALDH1A3, ALDH3A1, ALDH3B1, ALDH3B2, AOC2, AOC3, AOX1, COMT, DBH, DCT, DDC, FAH, GOT1, GOT2, GSTZ1, HGD, HPD, MAOA, MAOB, PNMT, TAT, TH, TPO, TYR 29 ABP1(12), ADH1A(2), ADH1B(6), ADH1C(7), ADH4(5), ADH6(9), ADH7(6), ADHFE1(7), ALDH3A1(6), ALDH3B1(5), ALDH3B2(8), AOC2(6), AOC3(14), AOX1(19), DBH(12), DCT(15), DDC(11), FAH(7), GOT1(6), GOT2(5), GSTZ1(4), HPD(7), MAOA(14), MAOB(7), PNMT(3), TAT(9), TPO(18), TYR(10) 10362323 240 53 232 56 63 96 38 13 30 0 0.17 0.49 208 HIFPATHWAY Under normal conditions, hypoxia inducible factor HIF-1 is degraded; under hypoxic conditions, it activates transcription of genes controlled by hpoxic response elements (HREs). ARNT, ASPH, COPS5, CREB1, EDN1, EP300, EPO, HIF1A, HSPCA, JUN, LDHA, NOS3, P4HB, VEGF, VHL 13 ARNT(7), ASPH(14), COPS5(6), CREB1(5), EDN1(2), EP300(29), EPO(2), HIF1A(17), JUN(1), LDHA(6), NOS3(11), P4HB(1), VHL(2) 5601682 103 37 102 17 27 33 20 4 19 0 0.17 0.49 209 ST_T_CELL_SIGNAL_TRANSDUCTION On activation of the T cell receptor, phospholipase C is activated to produce second messengers DAG and PIP3, both required for T cell activation. CBL, CD28, CD3D, CSK, CTLA4, DAG1, DTYMK, EPHB2, FBXW7, GRAP2, GRB2, ITK, ITPKA, ITPKB, LAT, LCK, LCP2, MAPK1, NCK1, NFAT5, NFKB1, NFKB2, NFKBIA, NFKBIB, NFKBIE, NFKBIL1, NFKBIL2, PAG, PAK1, PAK2, PAK3, PAK4, PAK6, PAK7, PLCG1, PTPRC, RAF1, RASGRP1, RASGRP2, RASGRP3, RASGRP4, SOS1, SOS2, VAV1, ZAP70 41 CBL(10), CD28(6), CD3D(3), CSK(1), CTLA4(2), DAG1(7), EPHB2(10), GRAP2(3), GRB2(3), ITK(10), ITPKB(6), LCK(5), LCP2(7), MAPK1(2), NCK1(4), NFAT5(13), NFKB1(12), NFKB2(10), NFKBIA(3), NFKBIB(3), NFKBIE(6), NFKBIL1(2), PAK1(3), PAK2(6), PAK3(14), PAK4(2), PAK6(3), PAK7(12), PLCG1(12), PTPRC(15), RAF1(7), RASGRP1(8), RASGRP2(5), RASGRP3(8), RASGRP4(7), SOS1(21), SOS2(22), VAV1(16), ZAP70(10) 18196743 299 68 288 107 83 116 37 13 44 6 0.17 0.49 210 FCER1PATHWAY In mast cells, Fc epsilon receptor 1 activates BTK, PKC, and the MAP kinase pathway to promote degranulation and arachnidonic acid release. BTK, CALM1, CALM2, CALM3, ELK1, FCER1A, FCER1G, FOS, GRB2, HRAS, JUN, LYN, MAP2K1, MAP2K4, MAP2K7, MAP3K1, MAPK1, MAPK3, MAPK8, NFATC1, NFATC2, NFATC3, NFATC4, PAK2, PIK3CA, PIK3R1, PLA2G4A, PLCG1, PPP3CA, PPP3CB, PPP3CC, PRKCB1, RAF1, SHC1, SOS1, SYK, SYT1, VAV1 33 BTK(11), CALM2(3), CALM3(1), ELK1(2), FCER1A(6), FCER1G(1), FOS(6), GRB2(3), JUN(1), LYN(7), MAP2K1(2), MAP2K4(6), MAPK1(2), MAPK3(4), MAPK8(7), NFATC2(15), NFATC3(12), NFATC4(8), PAK2(6), PLA2G4A(11), PLCG1(12), PPP3CA(4), PPP3CB(7), PPP3CC(6), RAF1(7), SHC1(11), SOS1(21), SYK(6), SYT1(4), VAV1(16) 12183025 208 59 202 61 65 74 28 9 28 4 0.17 0.49 211 ATMPATHWAY The tumor-suppressing protein kinase ATM responds to radiation-induced DNA damage by blocking cell-cycle progression and activating DNA repair. ABL1, ATM, BRCA1, CDKN1A, CHEK1, CHEK2, GADD45A, JUN, MAPK8, MDM2, MRE11A, NBS1, NFKB1, NFKBIA, RAD50, RAD51, RBBP8, RELA, TP53, TP73 16 ABL1(9), BRCA1(19), CDKN1A(1), CHEK1(4), CHEK2(14), JUN(1), MAPK8(7), MDM2(6), MRE11A(12), NFKB1(12), NFKBIA(3), RAD50(19), RAD51(4), RBBP8(10), RELA(6) 7665925 127 47 123 30 15 53 21 10 26 2 0.17 0.49 212 HSA00230_PURINE_METABOLISM Genes involved in purine metabolism ADA, ADCY1, ADCY2, ADCY3, ADCY4, ADCY5, ADCY6, ADCY7, ADCY8, ADCY9, ADK, ADSL, ADSS, ADSSL1, AK1, AK2, AK3L1, AK5, AK7, ALLC, AMPD1, AMPD2, AMPD3, APRT, ATIC, CANT1, DCK, DGUOK, ECGF1, ENPP1, ENPP3, ENTPD1, ENTPD2, ENTPD3, ENTPD4, ENTPD5, ENTPD6, ENTPD8, FHIT, GART, GDA, GMPR, GMPR2, GMPS, GUCY1A2, GUCY1A3, GUCY1B3, GUCY2C, GUCY2D, GUCY2F, GUK1, HPRT1, IMPDH1, IMPDH2, ITPA, NME1, NME2, NME4, NME6, NME7, NP, NPR1, NPR2, NT5C, NT5C1A, NT5C1B, NT5C2, NT5C3, NT5E, NT5M, NUDT2, NUDT5, NUDT9, PAICS, PAPSS1, PAPSS2, PDE10A, PDE11A, PDE1A, PDE1C, PDE2A, PDE3B, PDE4A, PDE4B, PDE4C, PDE4D, PDE5A, PDE6D, PDE6G, PDE6H, PDE7A, PDE7B, PDE8A, PDE8B, PDE9A, PFAS, PKLR, PKM2, PNPT1, POLA1, POLA2, POLD1, POLD2, POLD3, POLD4, POLE, POLE2, POLE3, POLE4, POLR1A, POLR1B, POLR1C, POLR1D, POLR2A, POLR2B, POLR2C, POLR2D, POLR2E, POLR2F, POLR2G, POLR2H, POLR2I, POLR2J, POLR2K, POLR2L, POLR3A, POLR3B, POLR3G, POLR3GL, POLR3H, POLR3K, PPAT, PRIM1, PRIM2, PRPS1, PRPS1L1, PRPS2, PRUNE, RFC5, RRM1, RRM2, RRM2B, SAC, XDH, ZNRD1 138 ADA(3), ADCY1(17), ADCY2(17), ADCY3(8), ADCY4(8), ADCY5(11), ADCY6(16), ADCY7(6), ADCY8(16), ADCY9(25), ADK(1), ADSL(7), ADSS(8), ADSSL1(6), AK1(2), AK2(4), AK5(6), AK7(15), ALLC(10), AMPD1(21), AMPD2(9), AMPD3(4), ATIC(9), CANT1(5), DCK(4), DGUOK(3), ENPP1(11), ENPP3(16), ENTPD1(6), ENTPD3(8), ENTPD4(4), ENTPD5(2), ENTPD6(15), FHIT(2), GART(8), GDA(5), GMPR(7), GMPR2(4), GMPS(13), GUCY1A2(10), GUCY1A3(12), GUCY1B3(7), GUCY2C(12), GUCY2D(7), GUCY2F(25), GUK1(6), HPRT1(2), IMPDH1(5), IMPDH2(10), ITPA(1), NME6(2), NME7(4), NPR1(14), NPR2(16), NT5C(1), NT5C1A(2), NT5C1B(10), NT5C2(7), NT5C3(8), NT5E(6), NT5M(4), NUDT2(3), NUDT5(1), NUDT9(1), PAICS(4), PAPSS1(6), PAPSS2(6), PDE10A(14), PDE11A(12), PDE1A(12), PDE1C(14), PDE2A(14), PDE3B(15), PDE4A(12), PDE4B(17), PDE4C(6), PDE4D(7), PDE5A(14), PDE6D(1), PDE7A(3), PDE7B(4), PDE8A(7), PDE8B(20), PDE9A(10), PFAS(10), PKLR(10), PKM2(5), PNPT1(9), POLA1(26), POLD1(15), POLD2(6), POLD3(6), POLD4(1), POLE(1), POLE2(4), POLE3(2), POLR1A(15), POLR1B(16), POLR1C(4), POLR1D(2), POLR2A(25), POLR2B(20), POLR2C(5), POLR2D(3), POLR2E(1), POLR2F(2), POLR2H(3), POLR2K(2), POLR3A(9), POLR3B(7), POLR3G(2), POLR3GL(2), POLR3H(3), PPAT(10), PRIM1(2), PRIM2(7), PRPS1(3), PRPS1L1(5), PRPS2(10), PRUNE(4), RFC5(7), RRM1(4), RRM2(5), RRM2B(5), XDH(10), ZNRD1(1) 55894213 1005 106 983 294 269 415 137 59 121 4 0.17 0.49 213 ETSPATHWAY The Ets transcription factors are activated by Ras and promote macrophage differentiation. CSF1, CSF1R, DDX20, E2F1, E2F4, ETS1, ETS2, ETV3, FOS, HDAC2, HDAC5, HRAS, JUN, NCOR2, RBL1, RBL2, SIN3A, SIN3B 15 CSF1(5), CSF1R(7), DDX20(6), E2F4(3), ETS1(6), ETS2(5), FOS(6), HDAC2(5), HDAC5(15), JUN(1), NCOR2(24), RBL1(17), RBL2(21), SIN3B(15) 6781625 136 45 130 37 37 60 13 8 15 3 0.17 0.49 214 TPOPATHWAY Thrombopoietin binds to its receptor and activates cell growth through the Erk and JNK MAP kinase pathways, protein kinase C, and JAK/STAT activation. CSNK2A1, FOS, GRB2, HRAS, JAK2, JUN, MAP2K1, MAPK3, MPL, PIK3CA, PIK3R1, PLCG1, PRKCA, PRKCB1, RAF1, RASA1, SHC1, SOS1, STAT1, STAT3, STAT5A, STAT5B, THPO 19 CSNK2A1(9), FOS(6), GRB2(3), JAK2(21), JUN(1), MAP2K1(2), MAPK3(4), MPL(5), PLCG1(12), PRKCA(10), RAF1(7), SHC1(11), SOS1(21), STAT1(14), STAT3(12), STAT5A(5), STAT5B(5), THPO(11) 8464663 159 48 152 38 41 60 24 10 16 8 0.18 0.50 215 HSA01030_GLYCAN_STRUCTURES_BIOSYNTHESIS_1 Genes involved in glycan structures - biosynthesis 1 A4GNT, ALG1, ALG10, ALG10B, ALG11, ALG12, ALG13, ALG14, ALG2, ALG3, ALG6, ALG8, ALG9, B3GALT6, B3GNT1, B3GNT2, B3GNT6, B3GNT7, B4GALT1, B4GALT2, B4GALT3, B4GALT4, B4GALT5, B4GALT7, C1GALT1, C1GALT1C1, ChGn, CHPF, CHST1, CHST11, CHST12, CHST13, CHST14, CHST2, CHST3, CHST4, CHST6, CHST7, CHSY-2, CHSY1, CSGlcA-T, DAD1, DDOST, DPAGT1, EXT1, EXT2, EXTL1, EXTL2, EXTL3, FUT11, FUT8, GALNAC4S-6ST, GALNACT-2, GALNT1, GALNT10, GALNT11, GALNT12, GALNT13, GALNT14, GALNT17, GALNT2, GALNT3, GALNT4, GALNT5, GALNT6, GALNT7, GALNT8, GALNT9, GALNTL1, GALNTL2, GALNTL4, GALNTL5, GANAB, GCNT1, GCNT3, GCNT4, GCS1, HS2ST1, HS3ST1, HS3ST2, HS3ST3A1, HS3ST3B1, HS3ST5, HS6ST1, HS6ST2, HS6ST3, LOC728969, MAN1A1, MAN1A2, MAN1B1, MAN1C1, MAN2A1, MGAT1, MGAT2, MGAT3, MGAT4A, MGAT4B, MGAT5, MGAT5B, NDST1, NDST2, NDST3, NDST4, OGT, RPN1, RPN2, ST3GAL1, ST3GAL2, ST3GAL3, ST3GAL4, ST6GAL1, ST6GALNAC1, STT3B, UST, WBSCR17, XYLT1, XYLT2 102 A4GNT(6), ALG1(2), ALG10(9), ALG10B(8), ALG11(6), ALG12(1), ALG13(17), ALG14(2), ALG2(2), ALG3(5), ALG6(5), ALG8(8), ALG9(6), B3GNT1(7), B3GNT2(4), B3GNT7(3), B4GALT1(2), B4GALT2(5), B4GALT3(8), B4GALT4(3), B4GALT5(2), B4GALT7(4), C1GALT1(4), C1GALT1C1(5), CHPF(5), CHST1(10), CHST11(9), CHST12(5), CHST14(2), CHST2(5), CHST3(4), CHST4(6), CHST7(4), CHSY1(1), DAD1(1), DDOST(3), DPAGT1(4), EXT1(12), EXT2(8), EXTL1(13), EXTL2(10), EXTL3(10), FUT11(2), FUT8(13), GALNT1(8), GALNT10(5), GALNT11(14), GALNT12(2), GALNT14(11), GALNT2(8), GALNT3(10), GALNT4(8), GALNT5(7), GALNT6(2), GALNT7(11), GALNT8(13), GALNTL1(12), GALNTL2(13), GALNTL4(6), GALNTL5(10), GANAB(13), GCNT1(8), GCNT3(7), GCNT4(1), HS2ST1(5), HS3ST1(5), HS3ST2(4), HS3ST3A1(3), HS3ST5(10), HS6ST2(11), HS6ST3(2), MAN1A1(11), MAN1A2(9), MAN1B1(4), MAN1C1(7), MAN2A1(23), MGAT1(3), MGAT2(2), MGAT3(4), MGAT4A(4), MGAT4B(7), MGAT5(9), MGAT5B(7), NDST1(13), NDST2(7), NDST3(17), NDST4(11), OGT(19), RPN1(6), RPN2(9), ST3GAL1(2), ST3GAL2(4), ST3GAL3(6), ST3GAL4(4), ST6GAL1(10), ST6GALNAC1(4), STT3B(6), UST(4), WBSCR17(14), XYLT1(15), XYLT2(9) 36647782 710 94 680 224 180 295 114 31 84 6 0.18 0.50 216 HSA04115_P53_SIGNALING_PATHWAY Genes involved in p53 signaling pathway APAF1, ATM, ATR, BAI1, BAX, BBC3, BID, CASP3, CASP8, CASP9, CCNB1, CCNB2, CCNB3, CCND1, CCND2, CCND3, CCNE1, CCNE2, CCNG1, CCNG2, CD82, CDC2, CDK2, CDK4, CDK6, CDKN1A, CDKN2A, CHEK1, CHEK2, CYCS, DDB2, EI24, FAS, GADD45A, GADD45B, GADD45G, GTSE1, IGF1, IGFBP3, LRDD, MDM2, MDM4, P53AIP1, PERP, PMAIP1, PPM1D, PTEN, RCHY1, RFWD2, RPRM, RRM2, RRM2B, SCOTIN, SERPINB5, SERPINE1, SESN1, SESN2, SESN3, SFN, SIAH1, STEAP3, THBS1, TNFRSF10B, TP53, TP53I3, TP73, TSC2, ZMAT3 54 APAF1(19), ATR(38), BAI1(8), BAX(4), BID(3), CASP3(4), CASP9(3), CCNB1(8), CCNB2(4), CCNB3(20), CCND2(7), CCND3(5), CCNE2(6), CCNG1(6), CCNG2(4), CD82(2), CDK2(5), CDK4(4), CDK6(3), CDKN1A(1), CDKN2A(1), CHEK1(4), CHEK2(14), CYCS(3), DDB2(5), EI24(7), FAS(7), GTSE1(2), IGF1(3), IGFBP3(7), MDM2(6), MDM4(1), PERP(3), PMAIP1(1), RCHY1(5), RFWD2(6), RRM2(5), RRM2B(5), SERPINB5(1), SERPINE1(5), SESN1(7), SESN2(3), SESN3(14), SIAH1(3), STEAP3(5), THBS1(12), TNFRSF10B(5), TP53I3(5), TSC2(14), ZMAT3(10) 16979755 323 72 317 96 60 137 46 25 49 6 0.18 0.50 217 APOPTOSIS_GENMAPP APAF1, BAK1, BCL2L7P1, BAX, BCL2, BCL2L1, BID, BIRC2, BIRC3, BIRC4, CASP2, CASP3, CASP6, CASP7, CASP8, CASP9, CYCS, FADD, FAS, FASLG, GZMB, IKBKG, JUN, MAP2K4, MAP3K1, MAP3K14, MAPK10, MCL1, MDM2, MYC, NFKB1, NFKBIA, PARP1, PRF1, RELA, RIPK1, TNF, TNFRSF1A, TNFRSF1B, TNFSF10, TP53, TRADD, TRAF1, TRAF2 37 APAF1(19), BAK1(4), BAX(4), BCL2L1(3), BID(3), BIRC2(13), BIRC3(3), CASP2(9), CASP3(4), CASP6(4), CASP7(4), CASP9(3), CYCS(3), FADD(1), FAS(7), FASLG(6), GZMB(2), JUN(1), MAP2K4(6), MAP3K14(12), MAPK10(9), MCL1(1), MDM2(6), MYC(7), NFKB1(12), NFKBIA(3), PARP1(11), PRF1(8), RELA(6), RIPK1(8), TNF(1), TNFRSF1A(6), TNFRSF1B(3), TNFSF10(1), TRAF1(5), TRAF2(5) 11030567 203 56 199 61 45 80 36 15 25 2 0.18 0.51 218 HIVNEFPATHWAY HIV-infected CD4 helper T cells may express Fas ligand, which binds to the Fas receptors of uninfected cells and induces apoptosis. ACTG1, ADPRT, APAF1, ARHGDIB, BAG4, BCL2, BID, BIRC2, BIRC3, BIRC4, CASP2, CASP3, CASP6, CASP7, CASP8, CASP9, CDC2L1, CDC2L2, CFLAR, CHUK, CRADD, CYCS, DAXX, DFFA, DFFB, FADD, GSN, LMNA, LMNB1, LMNB2, MAP2K7, MAP3K1, MAP3K14, MAP3K5, MAPK8, MDM2, NFKB1, NFKBIA, NUMA1, PAK2, PRKCD, PRKDC, PSEN1, PSEN2, PTK2, RASA1, RB1, RELA, RIPK1, SPTAN1, TNF, TNFRSF1A, TNFRSF1B, TNFRSF6, TNFSF6, TRADD, TRAF1, TRAF2 45 APAF1(19), ARHGDIB(2), BAG4(4), BID(3), BIRC2(13), BIRC3(3), CASP2(9), CASP3(4), CASP6(4), CASP7(4), CASP9(3), CFLAR(7), CHUK(11), CRADD(3), CYCS(3), DAXX(11), DFFA(1), DFFB(3), FADD(1), GSN(5), LMNA(8), LMNB1(5), MAP3K14(12), MAP3K5(21), MAPK8(7), MDM2(6), NFKB1(12), NFKBIA(3), NUMA1(28), PAK2(6), PRKCD(7), PRKDC(70), PSEN1(4), PSEN2(5), PTK2(11), RELA(6), RIPK1(8), SPTAN1(29), TNF(1), TNFRSF1A(6), TNFRSF1B(3), TRAF1(5), TRAF2(5) 21113499 381 69 374 98 92 159 52 25 50 3 0.18 0.51 219 TELPATHWAY Telomerase is a ribonucleotide protein that adds telomeric repeats to the 3' ends of chromosomes. AKT1, BCL2, EGFR, G22P1, HSPCA, IGF1R, KRAS2, MYC, POLR2A, PPP2CA, PRKCA, RB1, TEP1, TERF1, TERT, TNKS, TP53, XRCC5 13 AKT1(8), EGFR(20), IGF1R(13), MYC(7), POLR2A(25), PPP2CA(6), PRKCA(10), TEP1(19), TERF1(2), TERT(6), TNKS(20), XRCC5(7) 8698405 143 45 136 56 34 67 17 7 18 0 0.18 0.51 220 TCRPATHWAY T cell receptors bind to foreign peptides presented by MHC molecules and induce T cell activation. CALM1, CALM2, CALM3, CD3D, CD3E, CD3G, CD3Z, ELK1, FOS, FYN, GRB2, HRAS, JUN, LAT, LCK, MAP2K1, MAP2K4, MAP3K1, MAPK3, MAPK8, NFATC1, NFATC2, NFATC3, NFATC4, NFKB1, NFKBIA, PIK3CA, PIK3R1, PLCG1, PPP3CA, PPP3CB, PPP3CC, PRKCA, PRKCB1, PTPN7, RAC1, RAF1, RASA1, RELA, SHC1, SOS1, SYT1, TRA@, TRB@, VAV1, ZAP70 38 CALM2(3), CALM3(1), CD3D(3), CD3E(2), CD3G(2), ELK1(2), FOS(6), FYN(7), GRB2(3), JUN(1), LCK(5), MAP2K1(2), MAP2K4(6), MAPK3(4), MAPK8(7), NFATC2(15), NFATC3(12), NFATC4(8), NFKB1(12), NFKBIA(3), PLCG1(12), PPP3CA(4), PPP3CB(7), PPP3CC(6), PRKCA(10), PTPN7(5), RAF1(7), RELA(6), SHC1(11), SOS1(21), SYT1(4), VAV1(16), ZAP70(10) 13383283 223 62 217 65 62 85 30 11 31 4 0.18 0.51 221 O_GLYCAN_BIOSYNTHESIS GALNT1, GALNT10, GALNT2, GALNT3, GALNT4, GALNT6, GALNT7, GALNT8, GALNT9, GCNT1, SIAT4A, SIAT4B, ST3GAL1, ST3GAL2, ST3GAL4, WBSCR17 14 GALNT1(8), GALNT10(5), GALNT2(8), GALNT3(10), GALNT4(8), GALNT6(2), GALNT7(11), GALNT8(13), GCNT1(8), ST3GAL1(2), ST3GAL2(4), ST3GAL4(4), WBSCR17(14) 4989603 97 40 95 30 24 38 20 7 8 0 0.18 0.51 222 HSA00534_HEPARAN_SULFATE_BIOSYNTHESIS Genes involved in heparan sulfate biosynthesis EXT1, EXT2, EXTL1, EXTL2, EXTL3, GLCE, HS2ST1, HS3ST1, HS3ST2, HS3ST3A1, HS3ST3B1, HS3ST5, HS6ST1, HS6ST2, HS6ST3, LOC728969, NDST1, NDST2, NDST3, NDST4 17 EXT1(12), EXT2(8), EXTL1(13), EXTL2(10), EXTL3(10), GLCE(5), HS2ST1(5), HS3ST1(5), HS3ST2(4), HS3ST3A1(3), HS3ST5(10), HS6ST2(11), HS6ST3(2), NDST1(13), NDST2(7), NDST3(17), NDST4(11) 6906144 146 47 143 48 36 60 21 8 19 2 0.19 0.52 223 CTLPATHWAY Cytotoxic T lymphocytes induce apoptosis in infected cells presenting antigen-MHC-I complexes via the perforin and Fas/Fas ligand pathways. B2M, CD3D, CD3E, CD3G, CD3Z, GZMB, HLA-A, ICAM1, ITGAL, ITGB2, PRF1, TNFRSF6, TNFSF6, TRA@, TRB@ 10 B2M(2), CD3D(3), CD3E(2), CD3G(2), GZMB(2), HLA-A(5), ICAM1(3), ITGAL(13), ITGB2(14), PRF1(8) 2865849 54 30 52 22 13 30 6 0 5 0 0.19 0.52 224 GLUTAMATE_METABOLISM ABAT, ALDH4A1, ALDH5A1, CAD, CPS1, EPRS, GAD1, GAD2, GCLC, GCLM, GFPT1, GLS, GLS2, GLUD1, GLUL, GMPS, GOT1, GOT2, GPT, GPT2, GSS, NADSYN1, PPAT, QARS 23 ABAT(9), ALDH4A1(2), ALDH5A1(9), CAD(38), CPS1(24), EPRS(11), GAD1(8), GAD2(12), GCLC(8), GCLM(3), GFPT1(11), GLS(10), GLS2(9), GLUD1(4), GLUL(6), GMPS(13), GOT1(6), GOT2(5), GPT2(7), GSS(5), NADSYN1(12), PPAT(10), QARS(6) 11208144 228 58 221 60 48 99 36 10 31 4 0.19 0.52 225 IFNGPATHWAY IFN gamma signaling pathway IFNG, IFNGR1, IFNGR2, JAK1, JAK2, STAT1 5 IFNG(5), IFNGR1(6), IFNGR2(4), JAK2(21), STAT1(14) 2086709 50 25 48 14 11 15 10 2 6 6 0.19 0.52 226 MITRPATHWAY The MyoD/MEF2 transcription factors induce muscle cell differentiation and are repressed by the transcriptional repressor MITR. CAMK1, CAMK1G, HDAC9, MEF2A, MEF2B, MEF2C, MEF2D, MYOD1, YWHAH 9 CAMK1(9), CAMK1G(5), HDAC9(19), MEF2A(5), MEF2B(3), MEF2C(11), MEF2D(7), MYOD1(3), YWHAH(4) 2814942 66 28 62 15 15 27 7 3 14 0 0.19 0.52 227 TNFR2PATHWAY Tumor necrosis factor beta, produced by activated lymphocytes, binds to its receptor TNFR2 to induce activation in immune cells and apoptosis in many other cells. CHUK, DUSP1, IKBKAP, IKBKB, IKBKG, LTA, MAP3K1, MAP3K14, NFKB1, NFKBIA, RELA, RIPK1, TANK, TNFAIP3, TNFRSF1B, TRAF1, TRAF2, TRAF3 16 CHUK(11), DUSP1(2), IKBKAP(14), IKBKB(15), LTA(3), MAP3K14(12), NFKB1(12), NFKBIA(3), RELA(6), RIPK1(8), TANK(4), TNFAIP3(2), TNFRSF1B(3), TRAF1(5), TRAF2(5), TRAF3(6) 6845199 111 41 110 32 19 51 15 8 18 0 0.19 0.53 228 HSA04610_COMPLEMENT_AND_COAGULATION_CASCADES Genes involved in complement and coagulation cascades A2M, BDKRB1, BDKRB2, C1QA, C1QB, C1QC, C1R, C1S, C2, C3, C3AR1, C4A, C4B, C4BPA, C4BPB, C5, C5AR1, C6, C7, C8A, C8B, C8G, C9, CD46, CD55, CD59, CFB, CFD, CFH, CFI, CPB2, CR1, CR2, F10, F11, F12, F13A1, F13B, F2, F2R, F3, F5, F7, F8, F9, FGA, FGB, FGG, KLKB1, KNG1, MASP1, MASP2, MBL2, PLAT, PLAU, PLAUR, PLG, PROC, PROS1, SERPINA1, SERPINA5, SERPINC1, SERPIND1, SERPINE1, SERPINF2, SERPING1, TFPI, THBD, VWF 62 A2M(21), BDKRB1(5), BDKRB2(9), C1QA(6), C1QB(3), C1QC(6), C1R(15), C1S(9), C2(6), C3(24), C3AR1(7), C4BPA(8), C4BPB(4), C5(20), C5AR1(5), C6(23), C7(21), C8A(12), C8B(4), CD46(1), CD55(6), CD59(2), CFB(8), CFH(17), CFI(9), CPB2(7), CR1(28), F10(10), F11(10), F12(3), F13A1(10), F13B(13), F2(9), F2R(8), F3(6), F5(46), F7(2), F8(41), F9(11), FGA(30), FGB(6), FGG(12), KLKB1(13), KNG1(8), MASP1(14), MASP2(6), MBL2(3), PLAT(6), PLAU(5), PLAUR(5), PLG(13), PROC(7), SERPINA1(4), SERPINA5(3), SERPINC1(9), SERPIND1(6), SERPINE1(5), SERPINF2(5), SERPING1(7), TFPI(11), VWF(31) 30119736 664 86 636 182 183 284 84 33 72 8 0.19 0.53 229 STREPTOMYCIN_BIOSYNTHESIS GCK, HK1, HK2, HK3, IMPA1, PGM1, PGM3, TGDS 8 GCK(5), HK1(13), HK2(8), HK3(12), IMPA1(4), PGM1(9), PGM3(6), TGDS(3) 3521187 60 30 58 25 20 19 9 5 7 0 0.20 0.53 230 SIG_BCR_SIGNALING_PATHWAY Members of the BCR signaling pathway AKT1, AKT2, AKT3, BAD, BCL2, BCR, BLNK, BTK, CD19, CD22, CD81, CR2, CSK, DAG1, FLOT1, FLOT2, GRB2, GSK3A, GSK3B, INPP5D, ITPR1, ITPR2, ITPR3, LYN, MAP4K1, MAPK1, MAPK3, NFATC1, NFATC2, NR0B2, PDK1, PIK3CA, PIK3CD, PIK3R1, PLCG2, PPP1R13B, PPP3CA, PPP3CB, PPP3CC, PTPRC, RAF1, SHC1, SOS1, SOS2, SYK, VAV1 42 AKT1(8), AKT2(4), AKT3(8), BAD(2), BCR(6), BLNK(4), BTK(11), CD19(7), CD22(13), CSK(1), DAG1(7), FLOT1(1), FLOT2(3), GRB2(3), GSK3A(9), GSK3B(11), INPP5D(14), ITPR1(31), ITPR2(38), ITPR3(23), LYN(7), MAP4K1(13), MAPK1(2), MAPK3(4), NFATC2(15), NR0B2(2), PDK1(7), PIK3CD(10), PLCG2(27), PPP1R13B(7), PPP3CA(4), PPP3CB(7), PPP3CC(6), PTPRC(15), RAF1(7), SHC1(11), SOS1(21), SOS2(22), SYK(6), VAV1(16) 23088595 413 80 400 146 114 170 61 16 44 8 0.20 0.53 231 IL3PATHWAY IL-3 promotes proliferation and differentiation of hematopoietic cells via a heterodimeric receptor that activates the Stat5 and MAP kinase pathways. CSF2RB, FOS, GRB2, HRAS, IL3, IL3RA, JAK2, MAP2K1, MAPK3, PTPN6, RAF1, SHC1, SOS1, STAT5A, STAT5B 15 CSF2RB(11), FOS(6), GRB2(3), IL3RA(11), JAK2(21), MAP2K1(2), MAPK3(4), RAF1(7), SHC1(11), SOS1(21), STAT5A(5), STAT5B(5) 5983843 107 39 104 24 28 45 13 8 5 8 0.20 0.53 232 DREAMPATHWAY The transcription factor DREAM blocks expression of the prodynorphin gene, which encodes the ligand of an opioid receptor that blocks pain signaling. CREB1, CREM, CSEN, FOS, JUN, MAPK3, OPRK1, POLR2A, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B 12 CREB1(5), CREM(5), FOS(6), JUN(1), MAPK3(4), OPRK1(9), POLR2A(25), PRKACB(2), PRKACG(6), PRKAR1A(4), PRKAR2A(4), PRKAR2B(5) 4218350 76 36 74 21 16 38 7 5 10 0 0.20 0.53 233 HSA00740_RIBOFLAVIN_METABOLISM Genes involved in riboflavin metabolism ACP1, ACP2, ACP5, ACP6, ACPP, ACPT, ENPP1, ENPP3, FLAD1, LHPP, MTMR1, MTMR2, MTMR6, PHPT1, RFK, TYR 16 ACP1(4), ACP2(2), ACP5(4), ACP6(3), ACPP(5), ACPT(7), ENPP1(11), ENPP3(16), FLAD1(8), LHPP(2), MTMR1(16), MTMR2(4), MTMR6(8), PHPT1(2), RFK(2), TYR(10) 5220238 104 38 102 34 23 38 22 7 14 0 0.20 0.53 234 ASBCELLPATHWAY B cells require interaction with helper T cells to produce antigen-specific immunoglobulins as a key element of the human immune response. CD28, CD4, CD80, HLA-DRA, HLA-DRB1, IL10, IL2, IL4, TNFRSF5, TNFRSF6, TNFSF5, TNFSF6 8 CD28(6), CD4(8), CD80(7), HLA-DRB1(1), IL10(4), IL2(4) 1439736 30 17 30 11 5 15 5 0 5 0 0.20 0.53 235 AHSPPATHWAY Alpha-hemoglobin stabilizing protein (AHSP) prevents precitipation of hemoglobin alpha-subunits. ALAD, ALAS1, ALAS2, CPO, ERAF, FECH, GATA1, HBA1, HBA2, HBB, HMBS, UROD, UROS 10 ALAD(3), ALAS1(12), ALAS2(11), CPO(4), FECH(5), GATA1(9), HBB(3), HMBS(7), UROD(2), UROS(3) 2819483 59 27 57 12 10 29 6 3 11 0 0.20 0.53 236 CLASSICPATHWAY The classic complement pathway is initiated by antibodies and promotes phagocytosis and lysis of foreign cells as well as activating the inflammatory response. C1QA, C1QB, C1QG, C1R, C1S, C2, C3, C4A, C4B, C5, C6, C7, C8A, C9 10 C1QA(6), C1QB(3), C1R(15), C1S(9), C2(6), C3(24), C5(20), C6(23), C7(21), C8A(12) 5766353 139 41 133 37 28 61 20 7 19 4 0.21 0.53 237 G_PROTEIN_SIGNALING ADCY1, ADCY2, ADCY3, ADCY4, ADCY5, ADCY6, ADCY7, ADCY8, ADCY9, AKAP1, AKAP10, AKAP11, AKAP12, AKAP2, PALM2_AKAP2, AKAP3, AKAP4, AKAP5, AKAP6, AKAP7, AKAP8, AKAP9, ARHGEF1, CALM1, CALM2, CALM3, CHMP1B, GNA11, GNA12, GNA13, GNA14, GNA15, GNAI2, GNAI3, GNAL, GNAO1, GNAQ, GNAZ, GNB1, GNB2, GNB3, GNB5, GNG10, GNG10, LOC552891, GNG12, GNG13, GNG3, GNG4, GNG5, GNG7, GNGT1, GNGT2, HRAS, IL18BP, ITPR1, KCNJ3, KRAS, MGC11266, NRAS, PALM2, PALM2_AKAP2, PALM2_AKAP2, PDE1A, PDE1B, PDE1C, PDE4A, PDE4B, PDE4C, PDE4D, PDE7A, PDE7B, PDE8A, PDE8B, PLCB3, PPP3CA, PPP3CC, PRKACA, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, PRKCA, PRKCB1, PRKCD, PRKCE, PRKCG, PRKCH, PRKCI, PRKCQ, PRKCZ, PRKD1, PRKD3, RHOA, RRAS, SARA1, SLC9A1, USP5 88 ADCY1(17), ADCY2(17), ADCY3(8), ADCY4(8), ADCY5(11), ADCY6(16), ADCY7(6), ADCY8(16), ADCY9(25), AKAP1(8), AKAP10(7), AKAP11(32), AKAP12(20), AKAP3(15), AKAP4(1), AKAP5(2), AKAP6(30), AKAP7(4), AKAP8(2), AKAP9(57), ARHGEF1(11), CALM2(3), CALM3(1), CHMP1B(3), GNA11(3), GNA12(10), GNA13(9), GNA14(5), GNA15(1), GNAI2(7), GNAI3(3), GNAL(6), GNAO1(5), GNAZ(7), GNB1(3), GNB2(5), GNB3(4), GNB5(3), GNG12(2), GNG13(2), GNG3(3), GNGT2(1), ITPR1(31), KCNJ3(15), PALM2(6), PDE1A(12), PDE1B(9), PDE1C(14), PDE4A(12), PDE4B(17), PDE4C(6), PDE4D(7), PDE7A(3), PDE7B(4), PDE8A(7), PDE8B(20), PLCB3(9), PPP3CA(4), PPP3CC(6), PRKACA(4), PRKACB(2), PRKACG(6), PRKAR1A(4), PRKAR2A(4), PRKAR2B(5), PRKCA(10), PRKCD(7), PRKCE(11), PRKCG(10), PRKCH(9), PRKCI(8), PRKCQ(13), PRKCZ(4), PRKD1(8), PRKD3(10), RHOA(4), RRAS(1), SLC9A1(10), USP5(13) 39738052 724 94 704 266 195 290 107 39 84 9 0.21 0.53 238 SA_BONE_MORPHOGENETIC Bone morphogenetic protein binds to its receptor to induce ectopic bone formation and promote development of the viscera. BMP1, BMPR1A, BMPR1B, BMPR2, MADH1, MADH4, MADH6 4 BMP1(20), BMPR1A(8), BMPR1B(6), BMPR2(14) 2144786 48 26 47 8 14 18 9 2 5 0 0.21 0.54 239 TCYTOTOXICPATHWAY Cytotoxic T cells release perforin and granzyme to lyse foreign cell targets and express Fas ligand to promote Fas-induced apoptosis. CD2, CD28, CD3D, CD3E, CD3G, CD3Z, CD8A, ICAM1, ITGAL, ITGB2, PTPRC, THY1, TRA@, TRB@ 11 CD2(4), CD28(6), CD3D(3), CD3E(2), CD3G(2), CD8A(3), ICAM1(3), ITGAL(13), ITGB2(14), PTPRC(15), THY1(1) 3648096 66 32 65 27 16 33 7 2 8 0 0.21 0.55 240 ST_INTERFERON_GAMMA_PATHWAY The interferon gamma pathway resembles the JAK-STAT pathway and activates STAT transcription factors. CISH, IFNG, IFNGR1, JAK1, JAK2, PLA2G2A, PTPRU, REG1A, STAT1, STATIP1 8 IFNG(5), IFNGR1(6), JAK2(21), PTPRU(20), REG1A(4), STAT1(14) 3153605 70 32 68 19 13 27 12 2 10 6 0.22 0.56 241 HSA00251_GLUTAMATE_METABOLISM Genes involved in glutamate metabolism ABAT, ADC, ALDH4A1, ALDH5A1, CAD, CPS1, EARS2, EPRS, GAD1, GAD2, GCLC, GCLM, GFPT1, GFPT2, GLS, GLS2, GLUD1, GLUD2, GLUL, GMPS, GNPNAT1, GOT1, GOT2, GPT, GPT2, GSR, GSS, NADSYN1, NAGK, PPAT, QARS 30 ABAT(9), ADC(8), ALDH4A1(2), ALDH5A1(9), CAD(38), CPS1(24), EARS2(4), EPRS(11), GAD1(8), GAD2(12), GCLC(8), GCLM(3), GFPT1(11), GFPT2(12), GLS(10), GLS2(9), GLUD1(4), GLUD2(9), GLUL(6), GMPS(13), GNPNAT1(2), GOT1(6), GOT2(5), GPT2(7), GSR(5), GSS(5), NADSYN1(12), NAGK(3), PPAT(10), QARS(6) 13372528 271 62 264 78 60 122 39 10 36 4 0.22 0.56 242 EPHA4PATHWAY Eph Kinases and ephrins support platelet aggregation ACTA1, EPHA4, EPHB1, FYN, ITGA1, ITGB1, L1CAM, LYN, RAP1B, SELP 10 ACTA1(4), EPHA4(17), EPHB1(25), FYN(7), ITGA1(20), ITGB1(12), L1CAM(16), LYN(7), RAP1B(2), SELP(15) 5669558 125 41 120 38 33 58 12 4 18 0 0.22 0.56 243 HSA04512_ECM_RECEPTOR_INTERACTION Genes involved in ECM-receptor interaction AGRN, CD36, CD44, CD47, CHAD, COL11A1, COL11A2, COL1A1, COL1A2, COL2A1, COL3A1, COL4A1, COL4A2, COL4A4, COL4A6, COL5A1, COL5A2, COL5A3, COL6A1, COL6A2, COL6A3, COL6A6, DAG1, FN1, FNDC1, FNDC3A, FNDC4, FNDC5, GP1BA, GP1BB, GP5, GP6, GP9, HMMR, HSPG2, IBSP, ITGA1, ITGA10, ITGA11, ITGA2, ITGA2B, ITGA3, ITGA4, ITGA5, ITGA6, ITGA7, ITGA8, ITGA9, ITGAV, ITGB1, ITGB3, ITGB4, ITGB5, ITGB6, ITGB7, ITGB8, LAMA1, LAMA2, LAMA3, LAMA4, LAMA5, LAMB1, LAMB2, LAMB3, LAMB4, LAMC1, LAMC2, LAMC3, RELN, SDC1, SDC2, SDC3, SDC4, SPP1, SV2A, SV2B, SV2C, THBS1, THBS2, THBS3, THBS4, TNC, TNN, TNR, TNXB, VTN, VWF 81 CD36(7), CD44(12), CD47(8), CHAD(3), COL11A1(36), COL11A2(13), COL1A1(12), COL1A2(22), COL2A1(14), COL3A1(18), COL4A1(23), COL4A2(11), COL4A4(24), COL4A6(35), COL5A2(24), COL5A3(23), COL6A3(54), COL6A6(38), DAG1(7), FN1(39), FNDC1(37), FNDC3A(9), FNDC4(4), FNDC5(1), GP1BA(11), GP5(5), GP6(3), HMMR(12), HSPG2(37), IBSP(6), ITGA1(20), ITGA10(11), ITGA11(12), ITGA2(21), ITGA2B(11), ITGA3(6), ITGA4(12), ITGA5(12), ITGA6(12), ITGA7(10), ITGA8(16), ITGA9(15), ITGAV(10), ITGB1(12), ITGB3(16), ITGB4(12), ITGB5(8), ITGB6(6), ITGB7(8), ITGB8(5), LAMA1(39), LAMA2(62), LAMA3(35), LAMA4(22), LAMB1(22), LAMB2(27), LAMB3(16), LAMB4(27), LAMC1(17), LAMC2(12), LAMC3(13), RELN(48), SDC1(1), SDC2(2), SDC3(2), SDC4(8), SPP1(3), SV2A(17), SV2B(15), SV2C(16), THBS1(12), THBS2(22), THBS3(6), THBS4(9), TNC(19), TNN(16), TNR(16), TNXB(25), VWF(31) 73405265 1343 119 1316 398 353 551 174 68 166 31 0.22 0.56 244 PANTOTHENATE_AND_COA_BIOSYNTHESIS BCAT1, COASY, DPYD, DPYS, ENPP1, ENPP3, PANK1, PANK2, PANK3, PANK4, PPCS, UPB1 12 BCAT1(9), COASY(11), DPYD(16), DPYS(3), ENPP1(11), ENPP3(16), PANK1(3), PANK2(8), PANK3(7), PANK4(8), PPCS(4), UPB1(9) 4559642 105 36 104 23 27 36 17 5 20 0 0.22 0.56 245 HSA05050_DENTATORUBROPALLIDOLUYSIAN_ATROPHY Genes involved in dentatorubropallidoluysian atrophy (DRPLA) ATN1, BAIAP2, CASP1, CASP3, CASP7, CASP8, GAPDH, INS, INSR, ITCH, MAGI1, MAGI2, RERE, WWP1, WWP2 13 ATN1(9), BAIAP2(1), CASP1(7), CASP3(4), CASP7(4), GAPDH(2), INSR(18), ITCH(8), MAGI1(32), MAGI2(26), RERE(14), WWP1(18), WWP2(7) 7606175 150 46 148 40 32 77 20 6 15 0 0.22 0.56 246 PYRIMIDINE_METABOLISM AK3, AK3L1, AK3L1, AK3L2, CAD, CANT1, CDA, CMPK, CTPS, CTPS2, DCK, DCTD, DHODH, DPYD, DPYS, DTYMK, DUT, ECGF1, ENTPD1, ITPA, NME1, NME2, NP, NT5C, NT5E, NT5M, NUDT2, POLA, POLB, POLD1, POLD2, POLE, POLG, POLL, POLQ, POLR1B, POLR2A, POLR2B, POLR2C, POLR2D, POLR2E, POLR2F, POLR2G, POLR2H, POLR2I, POLR2J, POLR2K, POLR2L, POLRMT, POLS, RRM1, RRM2, TK1, TK2, TXNRD1, TYMS, UCK1, UCK2, UMPS, UNG, UPB1, UPP1 53 CAD(38), CANT1(5), CDA(1), CTPS(10), CTPS2(10), DCK(4), DCTD(5), DHODH(3), DPYD(16), DPYS(3), DUT(1), ENTPD1(6), ITPA(1), NT5C(1), NT5E(6), NT5M(4), NUDT2(3), POLB(4), POLD1(15), POLD2(6), POLE(1), POLG(7), POLL(8), POLQ(23), POLR1B(16), POLR2A(25), POLR2B(20), POLR2C(5), POLR2D(3), POLR2E(1), POLR2F(2), POLR2H(3), POLR2K(2), RRM1(4), RRM2(5), TK1(2), TK2(7), TXNRD1(10), TYMS(1), UCK1(5), UCK2(6), UMPS(7), UNG(1), UPB1(9), UPP1(4) 19174731 319 71 312 92 64 138 43 23 51 0 0.22 0.56 247 HSA00401_NOVOBIOCIN_BIOSYNTHESIS Genes involved in novobiocin biosynthesis GOT1, GOT2, TAT 3 GOT1(6), GOT2(5), TAT(9) 900313 20 14 19 3 5 7 3 3 2 0 0.23 0.56 248 MRNA_PROCESSING_REACTOME BRUNOL4, C10orf9, C20orf14, CD2BP2, CDC40, CLK2, CLK3, CLK4, COL2A1, CPSF1, CPSF2, CPSF3, CPSF4, CSTF1, CSTF2, CSTF2T, CSTF3, CUGBP1, CUGBP2, DDIT3, DDX1, DDX20, DHX15, DHX16, DHX38, DHX8, DHX9, DICER1, DNAJC8, FLJ10748, FNBP3, FUS, FUSIP1, GIPC1, HEAB, HNRPA2B1, HNRPA3, HNRPA3P1, HNRPA3, LOC387933, HNRPA3P1, HNRPA3, LOC389395, HNRPAB, HNRPC, HNRPC, HNRPCL1, LOC390615, LOC440563, HNRPD, HNRPH1, HNRPH2, HNRPL, HNRPR, HNRPU, HRMT1L2, LSM2, LSM7, METTL3, NCBP1, NCBP2, NONO, NUDT21, NXF1, PABPN1, PAPOLA, PHF5A, POLR2A, PPM1G, PRPF18, PRPF3, PRPF4, PRPF4B, PRPF8, PSKH1, PTBP1, PTBP2, RBM17, RBM5, RNGTT, RNMT, RNPC2, RNPS1, SF3A1, SF3A2, SF3A3, SF3B1, SF3B2, SF3B4, SF3B5, SF4, SFRS10, SFRS12, SFRS14, SFRS16, SFRS2, SFRS4, SFRS5, SFRS6, SFRS7, SFRS8, SFRS9, SMC1L1, SNRP70, SNRPA, SNRPA1, SNRPB, SNRPB2, SNRPD1, SNRPD2, SNRPD3, SNRPE, SNRPF, SNRPG, SNRPN, SNRPN, PAR1, SNRPN, SNURF, SPOP, SRPK1, SRPK2, SRRM1, SUPT5H, TMP21, TXNL4A, U2AF1, U2AF2, WDR57, XRN2 88 CD2BP2(3), CDC40(8), CLK2(10), CLK3(5), CLK4(6), COL2A1(14), CPSF1(9), CPSF2(10), CPSF3(8), CPSF4(3), CSTF1(4), CSTF2(12), CSTF2T(8), CSTF3(12), DDIT3(1), DDX1(6), DDX20(6), DHX15(10), DHX16(16), DHX38(14), DHX8(10), DHX9(18), DICER1(39), DNAJC8(1), FUS(3), GIPC1(1), METTL3(8), NCBP1(9), NCBP2(4), NONO(15), NXF1(4), PABPN1(4), PAPOLA(10), PHF5A(1), POLR2A(25), PPM1G(7), PRPF18(4), PRPF3(11), PRPF4(6), PRPF4B(25), PRPF8(27), PSKH1(6), PTBP1(2), PTBP2(6), RBM17(9), RBM5(5), RNGTT(13), RNMT(7), RNPS1(1), SF3A1(9), SF3A3(6), SF3B1(18), SF3B2(10), SF3B4(4), SF3B5(2), SNRPA(2), SNRPB(3), SNRPB2(1), SNRPD1(1), SNRPD2(2), SNRPD3(2), SNRPE(2), SNRPG(1), SRPK1(14), SRPK2(7), SRRM1(10), SUPT5H(20), U2AF1(3), U2AF2(6), XRN2(14) 36040722 583 94 568 169 167 224 81 40 67 4 0.23 0.56 249 HSA00565_ETHER_LIPID_METABOLISM Genes involved in ether lipid metabolism AGPAT1, AGPAT2, AGPAT3, AGPAT4, AGPAT6, AGPS, CHPT1, ENPP2, ENPP6, LYCAT, PAFAH1B1, PAFAH1B2, PAFAH1B3, PAFAH2, PLA2G10, PLA2G12A, PLA2G12B, PLA2G1B, PLA2G2A, PLA2G2D, PLA2G2E, PLA2G2F, PLA2G3, PLA2G4A, PLA2G5, PLA2G6, PLD1, PLD2, PPAP2A, PPAP2B, PPAP2C 29 AGPAT1(2), AGPAT2(1), AGPAT3(6), AGPAT4(4), AGPAT6(8), AGPS(10), ENPP2(20), ENPP6(9), PAFAH1B1(1), PAFAH1B2(3), PAFAH2(6), PLA2G10(1), PLA2G12A(1), PLA2G12B(3), PLA2G1B(1), PLA2G2D(2), PLA2G2E(3), PLA2G2F(3), PLA2G3(5), PLA2G4A(11), PLA2G5(2), PLA2G6(6), PLD1(16), PLD2(7), PPAP2A(4), PPAP2B(3) 7669749 138 46 135 42 33 56 17 7 23 2 0.23 0.56 250 LDLPATHWAY Low density lipoproteins (LDL) are present in blood plasma, contain cholesterol and triglycerides, and contribute to atherogenic plaque formation. ACAT1, CCL2, CSF1, IL6, LDLR, LPL 6 ACAT1(6), CSF1(5), IL6(2), LDLR(12), LPL(11) 1875911 36 22 35 9 13 14 3 1 5 0 0.23 0.56 251 SA_DIACYLGLYCEROL_SIGNALING DAG (diacylglycerol) signaling activity ESR1, ESR2, ITPKA, PDE1A, PDE1B, PLCB1, PLCB2, PRL, TRH, VIP 8 ESR2(8), PDE1A(12), PDE1B(9), PLCB1(6), PLCB2(9), PRL(6), VIP(2) 3374202 52 31 51 22 18 20 7 2 5 0 0.23 0.56 252 HSA00360_PHENYLALANINE_METABOLISM Genes involved in phenylalanine metabolism ABP1, ALDH1A3, ALDH3A1, ALDH3B1, ALDH3B2, AOC2, AOC3, ARD1A, DDC, EPX, ESCO1, ESCO2, GOT1, GOT2, HPD, LPO, LYCAT, MAOA, MAOB, MIF, MPO, MYST3, MYST4, NAT5, NAT6, PNPLA3, PRDX6, SH3GLB1, TAT, TPO 26 ABP1(12), ALDH3A1(6), ALDH3B1(5), ALDH3B2(8), AOC2(6), AOC3(14), DDC(11), EPX(14), ESCO1(11), ESCO2(6), GOT1(6), GOT2(5), HPD(7), LPO(6), MAOA(14), MAOB(7), MPO(9), NAT6(2), PNPLA3(6), PRDX6(2), SH3GLB1(8), TAT(9), TPO(18) 11884275 192 55 187 61 56 73 28 8 27 0 0.24 0.58 253 AMINOACYL_TRNA_BIOSYNTHESIS AARS, CARS, DARS, EPRS, FARS2, FARSLB, GARS, HARS, HARSL, IARS, KARS, LARS, LARS2, MARS, MARS2, NARS, QARS, RARS, SARS, TARS, WARS, WARS2, YARS 21 AARS(10), CARS(10), DARS(4), EPRS(11), FARS2(2), GARS(8), HARS(4), IARS(13), KARS(7), LARS(23), LARS2(9), MARS(12), MARS2(7), NARS(7), QARS(6), RARS(11), SARS(4), TARS(10), WARS(6), WARS2(5), YARS(8) 11301115 177 52 176 68 39 80 32 7 19 0 0.24 0.58 254 ST_JNK_MAPK_PATHWAY JNKs are MAP kinases regulated by several levels of kinases (MAPKK, MAPKKK) and phosphorylate transcription factors and regulatory proteins. AKT1, ATF2, CDC42, DLD, DUSP10, DUSP4, DUSP8, GAB1, GADD45A, GCK, IL1R1, JUN, MAP2K4, MAP2K5, MAP2K7, MAP3K1, MAP3K10, MAP3K11, MAP3K12, MAP3K13, MAP3K2, MAP3K3, MAP3K4, MAP3K5, MAP3K7, MAP3K7IP1, MAP3K7IP2, MAP3K9, MAPK10, MAPK7, MAPK8, MAPK9, MYEF2, NFATC3, NR2C2, PAPPA, SHC1, TP53, TRAF6, ZAK 34 AKT1(8), ATF2(6), CDC42(5), DLD(7), DUSP10(7), DUSP4(1), GAB1(10), GCK(5), IL1R1(5), JUN(1), MAP2K4(6), MAP2K5(2), MAP3K10(7), MAP3K11(5), MAP3K12(8), MAP3K13(13), MAP3K2(8), MAP3K3(9), MAP3K4(23), MAP3K5(21), MAP3K7(8), MAP3K9(6), MAPK10(9), MAPK7(17), MAPK8(7), MAPK9(7), MYEF2(6), NFATC3(12), NR2C2(8), PAPPA(32), SHC1(11), TRAF6(4), ZAK(12) 15751295 296 66 287 93 86 126 37 9 36 2 0.24 0.59 255 HSA04540_GAP_JUNCTION Genes involved in gap junction ADCY1, ADCY2, ADCY3, ADCY4, ADCY5, ADCY6, ADCY7, ADCY8, ADCY9, ADRB1, CDC2, CSNK1D, DRD1, DRD2, EDG2, EGF, EGFR, GJA1, GJD2, GNA11, GNAI1, GNAI2, GNAI3, GNAQ, GNAS, GRB2, GRM1, GRM5, GUCY1A2, GUCY1A3, GUCY1B3, GUCY2C, GUCY2D, GUCY2F, HRAS, HTR2A, HTR2B, HTR2C, ITPR1, ITPR2, ITPR3, KRAS, LOC643224, LOC654264, MAP2K1, MAP2K2, MAP2K5, MAP3K2, MAPK1, MAPK3, MAPK7, NPR1, NPR2, NRAS, PDGFA, PDGFB, PDGFC, PDGFD, PDGFRA, PDGFRB, PLCB1, PLCB2, PLCB3, PLCB4, PRKACA, PRKACB, PRKACG, PRKCA, PRKCB1, PRKCG, PRKG1, PRKG2, PRKX, PRKY, RAF1, SOS1, SOS2, SRC, TJP1, TUBA1A, TUBA1B, TUBA1C, TUBA3C, TUBA3D, TUBA3E, TUBA4A, TUBA8, TUBAL3, TUBB, TUBB1, TUBB2A, TUBB2B, TUBB2C, TUBB3, TUBB4, TUBB4Q, TUBB6, TUBB8 87 ADCY1(17), ADCY2(17), ADCY3(8), ADCY4(8), ADCY5(11), ADCY6(16), ADCY7(6), ADCY8(16), ADCY9(25), ADRB1(2), DRD1(6), DRD2(10), EGF(24), EGFR(20), GJA1(6), GJD2(8), GNA11(3), GNAI1(4), GNAI2(7), GNAI3(3), GNAS(25), GRB2(3), GRM1(22), GRM5(22), GUCY1A2(10), GUCY1A3(12), GUCY1B3(7), GUCY2C(12), GUCY2D(7), GUCY2F(25), HTR2A(15), HTR2B(2), ITPR1(31), ITPR2(38), ITPR3(23), MAP2K1(2), MAP2K5(2), MAP3K2(8), MAPK1(2), MAPK3(4), MAPK7(17), NPR1(14), NPR2(16), PDGFB(4), PDGFC(4), PDGFD(6), PDGFRA(29), PDGFRB(12), PLCB1(6), PLCB2(9), PLCB3(9), PLCB4(20), PRKACA(4), PRKACB(2), PRKACG(6), PRKCA(10), PRKCG(10), PRKG1(9), PRKG2(10), PRKX(4), RAF1(7), SOS1(21), SOS2(22), SRC(2), TJP1(33), TUBA1A(5), TUBA1B(4), TUBA1C(9), TUBA3C(7), TUBA3D(5), TUBA3E(15), TUBA4A(7), TUBA8(11), TUBAL3(5), TUBB1(8), TUBB2A(4), TUBB2B(2), TUBB2C(1), TUBB4(9), TUBB4Q(4), TUBB6(4), TUBB8(3) 44442050 878 98 856 271 238 363 130 38 99 10 0.25 0.59 256 HSA00533_KERATAN_SULFATE_BIOSYNTHESIS Genes involved in keratan sulfate biosynthesis B3GNT1, B3GNT2, B3GNT7, B4GALT1, B4GALT2, B4GALT3, B4GALT4, CHST1, CHST2, CHST4, CHST6, FUT8, ST3GAL1, ST3GAL2, ST3GAL3, ST3GAL4 15 B3GNT1(7), B3GNT2(4), B3GNT7(3), B4GALT1(2), B4GALT2(5), B4GALT3(8), B4GALT4(3), CHST1(10), CHST2(5), CHST4(6), FUT8(13), ST3GAL1(2), ST3GAL2(4), ST3GAL3(6), ST3GAL4(4) 3844793 82 35 76 32 20 38 11 3 10 0 0.25 0.61 257 HSA00361_GAMMA_HEXACHLOROCYCLOHEXANE_DEGRADATION Genes involved in gamma-hexachlorocyclohexane degradation ACP1, ACP2, ACP5, ACP6, ACPP, ACPT, ALPI, ALPL, ALPP, ALPPL2, CMBL, CYP3A4, CYP3A43, CYP3A5, CYP3A7, DHRS1, DHRS2, DHRS3, DHRS7, DHRSX, PON1, PON2, PON3 23 ACP1(4), ACP2(2), ACP5(4), ACP6(3), ACPP(5), ACPT(7), ALPI(3), ALPL(3), ALPP(4), ALPPL2(5), CMBL(4), CYP3A4(14), CYP3A43(5), CYP3A5(7), CYP3A7(9), DHRS1(4), DHRS2(3), DHRS3(2), DHRS7(9), DHRSX(4), PON1(12), PON2(8), PON3(1) 6073229 122 41 119 36 33 42 25 8 14 0 0.26 0.62 258 HSA00061_FATTY_ACID_BIOSYNTHESIS Genes involved in fatty acid biosynthesis ACACA, ACACB, FASN, MCAT, OLAH, OXSM 5 ACACA(27), ACACB(31), MCAT(3), OLAH(7), OXSM(6) 4227432 74 35 71 25 20 27 11 2 10 4 0.26 0.63 259 MYOSINPATHWAY Myosin light chain kinase phosphorylates myosin and promotes muscle contraction and platelet formation; myosin phosphatase antagonizes these processes. ARHGAP5, ARHGEF1, GNA12, GNA13, GNAQ, GNB1, GNGT1, MYL2, MYLK, PLCB1, PPP1R12B, PRKCA, PRKCB1, PRKCL1, ROCK1 13 ARHGAP5(24), ARHGEF1(11), GNA12(10), GNA13(9), GNB1(3), MYL2(1), MYLK(17), PLCB1(6), PPP1R12B(18), PRKCA(10), ROCK1(27) 7293563 136 43 132 32 39 46 17 7 19 8 0.27 0.63 260 HSA04650_NATURAL_KILLER_CELL_MEDIATED_CYTOTOXICITY Genes involved in natural killer cell mediated cytotoxicity ARAF, BID, BRAF, CASP3, CD244, CD247, CD48, CHP, CSF2, FAS, FASLG, FCER1G, FCGR3A, FCGR3B, FYN, GRB2, GZMB, HCST, HLA-A, HLA-B, HLA-C, HLA-E, HLA-G, HRAS, ICAM1, ICAM2, IFNA1, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA2, IFNA21, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, IFNAR1, IFNAR2, IFNB1, IFNG, IFNGR1, IFNGR2, ITGAL, ITGB2, KIR2DL1, KIR2DL2, KIR2DL3, KIR2DL4, KIR2DL5A, KIR2DS1, KIR2DS2, KIR3DL1, KIR3DL2, KLRC1, KLRC2, KLRC3, KLRD1, KLRK1, KRAS, LAT, LCK, LCP2, LOC652578, MAP2K1, MAP2K2, MAPK1, MAPK3, MICA, MICB, NCR1, NCR2, NCR3, NFAT5, NFATC1, NFATC2, NFATC3, NFATC4, NRAS, PAK1, PIK3CA, PIK3CB, PIK3CD, PIK3CG, PIK3R1, PIK3R2, PIK3R3, PIK3R5, PLCG1, PLCG2, PPP3CA, PPP3CB, PPP3CC, PPP3R1, PPP3R2, PRF1, PRKCA, PRKCB1, PRKCG, PTK2B, PTPN11, PTPN6, RAC1, RAC2, RAC3, RAF1, SH2D1A, SH2D1B, SH3BP2, SHC1, SHC2, SHC3, SHC4, SOS1, SOS2, SYK, TNF, TNFRSF10A, TNFRSF10B, TNFRSF10C, TNFRSF10D, TNFSF10, TYROBP, ULBP1, ULBP2, ULBP3, VAV1, VAV2, VAV3, ZAP70 118 ARAF(8), BID(3), BRAF(12), CASP3(4), CD244(4), CD247(5), CD48(4), FAS(7), FASLG(6), FCER1G(1), FCGR3A(2), FCGR3B(5), FYN(7), GRB2(3), GZMB(2), HCST(2), HLA-A(5), HLA-B(3), HLA-E(2), HLA-G(3), ICAM1(3), ICAM2(5), IFNA10(2), IFNA13(3), IFNA14(3), IFNA16(2), IFNA17(2), IFNA2(1), IFNA21(2), IFNA4(3), IFNA5(2), IFNA6(6), IFNA7(2), IFNA8(2), IFNAR1(9), IFNAR2(8), IFNB1(4), IFNG(5), IFNGR1(6), IFNGR2(4), ITGAL(13), ITGB2(14), KIR2DL1(6), KIR2DL3(2), KIR2DL4(3), KIR3DL1(7), KIR3DL2(7), KLRC1(2), KLRC2(3), KLRC3(1), KLRD1(2), KLRK1(1), LCK(5), LCP2(7), MAP2K1(2), MAPK1(2), MAPK3(4), MICB(3), NCR1(5), NCR2(5), NFAT5(13), NFATC2(15), NFATC3(12), NFATC4(8), PAK1(3), PIK3CB(19), PIK3CD(10), PIK3CG(25), PIK3R2(4), PIK3R3(8), PIK3R5(8), PLCG1(12), PLCG2(27), PPP3CA(4), PPP3CB(7), PPP3CC(6), PPP3R1(2), PPP3R2(1), PRF1(8), PRKCA(10), PRKCG(10), PTK2B(16), PTPN11(8), RAC2(2), RAF1(7), SH2D1A(3), SH2D1B(2), SH3BP2(10), SHC1(11), SHC3(9), SHC4(7), SOS1(21), SOS2(22), SYK(6), TNF(1), TNFRSF10A(3), TNFRSF10B(5), TNFRSF10C(3), TNFRSF10D(10), TNFSF10(1), TYROBP(1), ULBP1(2), ULBP2(5), ULBP3(1), VAV1(16), VAV2(5), VAV3(13), ZAP70(10) 36322264 668 95 653 211 189 264 91 36 80 8 0.27 0.63 261 INTEGRIN_MEDIATED_CELL_ADHESION_KEGG AKT1, AKT3, BCAR1, CAPN1, CAPN10, CAPN11, CAPN2, CAPN3, CAPN5, CAPN6, CAPN7, CAPN9, CAPNS1, CAV1, CAV2, CAV3, CDC42, CRK, CSK, DKFZp434E1119, DOCK1, FLJ14825, FLJ40125, FYN, GIT2, GRB2, ILK, ITGA10, ITGA11, ITGA2, ITGA2B, ITGA3, ITGA4, ITGA5, ITGA6, ITGA7, ITGA8, ITGA9, ITGAD, ITGAE, ITGAL, ITGAM, ITGAV, ITGAX, ITGB1, ITGB2, ITGB3, ITGB4, ITGB5, ITGB6, ITGB7, ITGB8, LOC283874, PDPK1, MAP2K1, MAP2K2, MAP2K3, MAP2K6, MAPK10, MAPK12, MAPK4, MAPK6, MAPK7, MGC17301, MYLK2, PAK1, PAK2, PAK3, PAK4, PAK6, PDPK1, PIK3R2, PTK2, PXN, RAC1, RAC2, RAC3, RAP1B, RAPGEF1, RHO, ROCK1, ROCK2, SDCCAG8, SEPP1, SHC1, SHC3, SORBS1, SOS1, SRC, TLN1, TNS, TNS1, VASP, VAV2, VAV3, VCL, ZYX 86 AKT1(8), AKT3(8), CAPN1(4), CAPN10(8), CAPN11(8), CAPN2(6), CAPN3(13), CAPN5(6), CAPN6(6), CAPN7(8), CAPN9(12), CAPNS1(3), CAV2(1), CDC42(5), CRK(1), CSK(1), DOCK1(32), FYN(7), GIT2(9), GRB2(3), ILK(8), ITGA10(11), ITGA11(12), ITGA2(21), ITGA2B(11), ITGA3(6), ITGA4(12), ITGA5(12), ITGA6(12), ITGA7(10), ITGA8(16), ITGA9(15), ITGAD(11), ITGAE(14), ITGAL(13), ITGAM(24), ITGAV(10), ITGAX(9), ITGB1(12), ITGB2(14), ITGB3(16), ITGB4(12), ITGB5(8), ITGB6(6), ITGB7(8), ITGB8(5), MAP2K1(2), MAP2K3(8), MAP2K6(9), MAPK10(9), MAPK4(6), MAPK6(11), MAPK7(17), MYLK2(7), PAK1(3), PAK2(6), PAK3(14), PAK4(2), PAK6(3), PDPK1(3), PIK3R2(4), PTK2(11), PXN(6), RAC2(2), RAP1B(2), RAPGEF1(18), RHO(8), ROCK1(27), ROCK2(15), SDCCAG8(14), SEPP1(4), SHC1(11), SHC3(9), SORBS1(22), SOS1(21), SRC(2), TLN1(28), TNS1(20), VASP(2), VAV2(5), VAV3(13), VCL(14), ZYX(12) 45473574 827 99 800 281 225 335 101 37 117 12 0.27 0.63 262 PEPIPATHWAY Proepithelin (PEPI) induces epithelial cells to secrete IL-8, which promotes elastase secretion by neutrophils. ELA1, ELA2, ELA2A, ELA2B, ELA3B, GRN, IL8, SLPI 3 GRN(4), IL8(3), SLPI(3) 610167 10 10 9 1 3 3 2 0 2 0 0.27 0.63 263 HSA00280_VALINE_LEUCINE_AND_ISOLEUCINE_DEGRADATION Genes involved in valine, leucine and isoleucine degradation ABAT, ACAA1, ACAA2, ACADM, ACADS, ACAT1, ACAT2, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH6A1, ALDH7A1, ALDH9A1, AOX1, AUH, BCAT1, BCAT2, BCKDHA, BCKDHB, DBT, DLD, ECHS1, EHHADH, HADH, HADHA, HADHB, HIBADH, HIBCH, HMGCL, HMGCS1, HMGCS2, HSD17B10, HSD17B4, IVD, MCCC1, MCCC2, MCEE, MUT, OXCT1, OXCT2, PCCA, PCCB 44 ABAT(9), ACAA1(5), ACAA2(2), ACADM(6), ACADS(5), ACAT1(6), ACAT2(5), ALDH1B1(7), ALDH2(2), ALDH3A1(6), ALDH3A2(2), ALDH6A1(5), ALDH7A1(2), ALDH9A1(4), AOX1(19), AUH(4), BCAT1(9), BCAT2(6), BCKDHA(7), BCKDHB(3), DBT(3), DLD(7), ECHS1(3), EHHADH(9), HADH(1), HADHA(7), HADHB(5), HIBADH(4), HIBCH(7), HMGCL(3), HMGCS1(4), HMGCS2(8), HSD17B10(4), HSD17B4(10), IVD(4), MCCC1(11), MCCC2(7), MUT(7), OXCT1(10), OXCT2(2), PCCA(10), PCCB(8) 14626083 248 59 245 60 61 108 42 15 20 2 0.27 0.63 264 SRCRPTPPATHWAY Activation of Src by Protein-tyrosine phosphatase alpha CCNB1, CDC2, CDC25A, CDC25B, CDC25C, CSK, GRB2, PRKCA, PRKCB1, PTPRA, SRC 9 CCNB1(8), CDC25A(9), CDC25B(3), CDC25C(8), CSK(1), GRB2(3), PRKCA(10), PTPRA(11), SRC(2) 3211443 55 30 52 23 12 18 11 4 10 0 0.27 0.63 265 RACCYCDPATHWAY Ras, Rac, and Rho coordinate to induce cyclin D1 expression and activate cdk2 to promote the G1/S transition. AKT1, ARHA, CCND1, CCNE1, CDK2, CDK4, CDK6, CDKN1A, CDKN1B, E2F1, HRAS, MAPK1, MAPK3, NFKB1, NFKBIA, PAK1, PIK3CA, PIK3R1, RAC1, RAF1, RB1, RELA, TFDP1 17 AKT1(8), CDK2(5), CDK4(4), CDK6(3), CDKN1A(1), CDKN1B(5), MAPK1(2), MAPK3(4), NFKB1(12), NFKBIA(3), PAK1(3), RAF1(7), RELA(6) 4670060 63 32 60 19 5 29 15 5 9 0 0.27 0.63 266 NUCLEAR_RECEPTORS ALK, AR, ESR1, ESR2, ESRRA, HNF4A, NPM1, NR0B1, NR1D2, NR1H2, NR1H3, NR1I2, NR1I3, NR2C2, NR2E1, NR2F1, NR2F2, NR2F6, NR3C1, NR4A1, NR4A2, NR5A1, NR5A2, PGR, PPARA, PPARD, PPARG, RARA, RARB, RARG, ROR1, RORA, RORC, RXRA, RXRB, RXRG, THRA, THRA, NR1D1, THRB, VDR 37 ALK(21), AR(5), ESR2(8), ESRRA(2), HNF4A(15), NPM1(3), NR0B1(8), NR1D1(3), NR1D2(5), NR1H2(4), NR1H3(5), NR1I2(5), NR1I3(7), NR2C2(8), NR2E1(6), NR2F1(5), NR2F2(6), NR3C1(13), NR4A1(4), NR4A2(13), NR5A2(14), PGR(9), PPARA(2), PPARD(6), PPARG(5), RARA(3), RARB(6), RARG(6), ROR1(11), RORA(9), RORC(8), RXRA(1), RXRG(10), THRA(5), THRB(4), VDR(9) 13724575 254 60 244 77 80 108 29 15 20 2 0.27 0.63 267 HSA00970_AMINOACYL_TRNA_BIOSYNTHESIS Genes involved in aminoacyl-tRNA biosynthesis AARS, AARS2, CARS, CARS2, DARS, DARS2, EARS2, EPRS, FARS2, FARSA, FARSB, GARS, HARS, HARS2, IARS, IARS2, KARS, LARS, LARS2, MARS, MARS2, MTFMT, NARS, NARS2, PARS2, QARS, RARS, RARS2, SARS, SARS2, TARS, TARS2, VARS, VARS2, WARS, WARS2, YARS, YARS2 38 AARS(10), AARS2(13), CARS(10), CARS2(1), DARS(4), DARS2(7), EARS2(4), EPRS(11), FARS2(2), FARSA(6), FARSB(7), GARS(8), HARS(4), HARS2(8), IARS(13), IARS2(21), KARS(7), LARS(23), LARS2(9), MARS(12), MARS2(7), MTFMT(1), NARS(7), NARS2(7), PARS2(4), QARS(6), RARS(11), RARS2(7), SARS(4), SARS2(7), TARS(10), TARS2(10), VARS(8), VARS2(5), WARS(6), WARS2(5), YARS(8), YARS2(3) 19103987 296 71 293 99 82 120 50 12 32 0 0.28 0.63 268 FIBRINOLYSISPATHWAY Thrombin cleavage of fibrinogen results in rapid formation of fibrin threads that form a mesh to capture platelets and other blood cells into a clot. CPB2, F13A1, F2, F2R, FGA, FGB, FGG, PLAT, PLAU, PLG, SERPINB2, SERPINE1 12 CPB2(7), F13A1(10), F2(9), F2R(8), FGA(30), FGB(6), FGG(12), PLAT(6), PLAU(5), PLG(13), SERPINB2(9), SERPINE1(5) 4749169 120 40 115 23 42 42 21 7 8 0 0.28 0.63 269 CHEMICALPATHWAY DNA damage promotes Bid cleavage, which stimulates mitochondrial cytochrome c release and consequent caspase activation, resulting in apoptosis. ADPRT, AKT1, APAF1, ATM, BAD, BAX, BCL2, BCL2L1, BID, CASP3, CASP6, CASP7, CASP9, CYCS, EIF2S1, PRKCA, PRKCB1, PTK2, PXN, STAT1, TLN1, TP53 18 AKT1(8), APAF1(19), BAD(2), BAX(4), BCL2L1(3), BID(3), CASP3(4), CASP6(4), CASP7(4), CASP9(3), CYCS(3), EIF2S1(1), PRKCA(10), PTK2(11), PXN(6), STAT1(14), TLN1(28) 7131760 127 43 122 37 35 50 20 7 15 0 0.28 0.63 270 HSA00052_GALACTOSE_METABOLISM Genes involved in galactose metabolism AKR1B1, AKR1B10, B4GALT1, B4GALT2, G6PC, G6PC2, GAA, GALE, GALK1, GALK2, GALT, GANC, GCK, GLA, GLB1, HK1, HK2, HK3, HSD3B7, LALBA, LCT, MGAM, PFKL, PFKM, PFKP, PGM1, PGM3, RDH11, RDH12, RDH13, RDH14, UGP2 31 AKR1B1(2), AKR1B10(4), B4GALT1(2), B4GALT2(5), G6PC(6), G6PC2(9), GAA(5), GALE(2), GALK1(3), GALK2(3), GALT(2), GANC(17), GCK(5), GLA(3), GLB1(9), HK1(13), HK2(8), HK3(12), HSD3B7(3), LALBA(1), LCT(30), MGAM(49), PFKM(7), PFKP(11), PGM1(9), PGM3(6), RDH11(3), RDH12(6), RDH13(5), RDH14(3), UGP2(8) 12427761 251 61 244 77 75 110 28 17 21 0 0.28 0.63 271 VEGFPATHWAY Vascular endothelial growth factor (VEGF) is upregulated by hypoxic conditions and promotes normal blood vessel formation and angiogenesis related to tumor growth or cardiac disease. ARNT, EIF1, EIF1A, EIF2B1, EIF2B2, EIF2B3, EIF2B4, EIF2B5, EIF2S1, EIF2S2, EIF2S3, ELAVL1, FLT1, FLT4, HIF1A, HRAS, KDR, NOS3, PIK3CA, PIK3R1, PLCG1, PRKCA, PRKCB1, PTK2, PXN, SHC1, VEGF, VHL 23 ARNT(7), EIF1(1), EIF2B1(1), EIF2B2(4), EIF2B3(8), EIF2B4(5), EIF2B5(6), EIF2S1(1), EIF2S2(5), EIF2S3(6), ELAVL1(6), FLT1(23), FLT4(10), HIF1A(17), KDR(23), NOS3(11), PLCG1(12), PRKCA(10), PTK2(11), PXN(6), SHC1(11), VHL(2) 9724910 186 49 183 53 49 80 20 10 27 0 0.28 0.63 272 SHHPATHWAY Sonic hedgehog (Shh) signaling in the developing CNS induces neuronal proliferation via interaction with the patched (Ptc-1) and smoothened receptors. DYRK1A, DYRK1B, GLI, GLI2, GLI3, GSK3B, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, PTCH, SHH, SMO, SUFU 12 DYRK1B(4), GLI2(11), GLI3(21), GSK3B(11), PRKACB(2), PRKACG(6), PRKAR1A(4), PRKAR2A(4), PRKAR2B(5), SHH(7), SMO(6), SUFU(7) 4817523 88 34 86 48 26 37 5 3 17 0 0.28 0.63 273 NFKBPATHWAY Inactive nuclear factor kB (NF-kB) is inhibited by the IkB family in the cytoplasm; active NF-kB is localized in the nucleus and regulates transcription of a variety of genes. CHUK, FADD, IKBKB, IKBKG, IL1A, IL1R1, IRAK1, MAP3K1, MAP3K14, MAP3K7, MAP3K7IP1, MYD88, NFKB1, NFKBIA, RELA, RIPK1, TLR4, TNF, TNFAIP3, TNFRSF1A, TNFRSF1B, TRADD, TRAF6 19 CHUK(11), FADD(1), IKBKB(15), IL1A(1), IL1R1(5), IRAK1(5), MAP3K14(12), MAP3K7(8), MYD88(1), NFKB1(12), NFKBIA(3), RELA(6), RIPK1(8), TLR4(14), TNF(1), TNFAIP3(2), TNFRSF1A(6), TNFRSF1B(3), TRAF6(4) 7245763 118 41 117 38 24 49 19 8 18 0 0.28 0.64 274 RNAPATHWAY dsRNA-activated protein kinase phosphorylates elF2a, which generally inhibits translation, and activates NF-kB to provoke inflammation. CHUK, DNAJC3, EIF2S1, EIF2S2, MAP3K14, NFKB1, NFKBIA, PRKR, RELA, TP53 8 CHUK(11), DNAJC3(8), EIF2S1(1), EIF2S2(5), MAP3K14(12), NFKB1(12), NFKBIA(3), RELA(6) 3095289 58 27 57 9 9 22 14 4 9 0 0.28 0.64 275 HSA00500_STARCH_AND_SUCROSE_METABOLISM Genes involved in starch and sucrose metabolism AGL, AMY1A, AMY1B, AMY1C, AMY2A, AMY2B, ASCC3, ASCC3L1, ATP13A2, DDX18, DDX19A, DDX23, DDX4, DDX41, DDX47, DDX50, DDX51, DDX52, DDX54, DDX55, DDX56, DHX58, ENPP1, ENPP3, ENTPD7, EP400, ERCC2, ERCC3, G6PC, G6PC2, GAA, GANC, GBA, GBA3, GBE1, GCK, GPI, GUSB, GYS1, GYS2, HK1, HK2, HK3, IFIH1, LYZL1, MGAM, MOV10L1, NUDT5, NUDT8, PGM1, PGM3, PYGB, PYGL, PYGM, RAD54B, RAD54L, RUVBL2, SETX, SI, SKIV2L2, SMARCA2, SMARCA5, TREH, UGDH, UGP2, UGT1A1, UGT1A10, UGT1A3, UGT1A4, UGT1A5, UGT1A6, UGT1A7, UGT1A8, UGT1A9, UGT2A1, UGT2A3, UGT2B10, UGT2B11, UGT2B15, UGT2B17, UGT2B28, UGT2B4, UGT2B7, UXS1 79 AGL(18), AMY2A(7), AMY2B(11), ASCC3(25), ATP13A2(6), DDX18(14), DDX19A(1), DDX23(12), DDX4(18), DDX41(2), DDX47(8), DDX50(11), DDX52(7), DDX54(8), DDX55(5), DDX56(6), DHX58(5), ENPP1(11), ENPP3(16), ENTPD7(7), ERCC2(4), ERCC3(11), G6PC(6), G6PC2(9), GAA(5), GANC(17), GBA(4), GBA3(9), GBE1(12), GCK(5), GPI(9), GUSB(5), GYS1(12), GYS2(19), HK1(13), HK2(8), HK3(12), IFIH1(5), LYZL1(2), MGAM(49), NUDT5(1), NUDT8(1), PGM1(9), PGM3(6), PYGB(10), PYGL(9), PYGM(10), RAD54B(14), RAD54L(5), RUVBL2(6), SETX(41), SI(47), SKIV2L2(20), SMARCA2(24), SMARCA5(19), TREH(4), UGDH(3), UGP2(8), UGT1A1(6), UGT1A10(8), UGT1A3(4), UGT1A4(4), UGT1A5(7), UGT1A6(5), UGT1A7(9), UGT1A8(4), UGT1A9(4), UGT2A1(9), UGT2A3(5), UGT2B10(14), UGT2B11(22), UGT2B15(9), UGT2B17(4), UGT2B28(14), UGT2B4(10), UGT2B7(10), UXS1(5) 42214570 804 91 776 203 212 294 139 48 104 7 0.28 0.64 276 VALINE_LEUCINE_AND_ISOLEUCINE_DEGRADATION ACAA1, ACAA2, ACADL, ACADM, ACADS, ACADSB, ACAT1, ACAT2, ALDH1A1, ALDH1A2, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH6A1, ALDH9A1, AOX1, BCAT1, BCKDHA, BCKDHB, ECHS1, EHHADH, HADHA, HADHB, HIBADH, HMGCL, IVD, MCCC1, MCCC2, MCEE, MUT, OXCT1, PCCA, PCCB, SDS 36 ACAA1(5), ACAA2(2), ACADL(7), ACADM(6), ACADS(5), ACADSB(4), ACAT1(6), ACAT2(5), ALDH1A1(6), ALDH1A2(9), ALDH1B1(7), ALDH2(2), ALDH3A1(6), ALDH3A2(2), ALDH6A1(5), ALDH9A1(4), AOX1(19), BCAT1(9), BCKDHA(7), BCKDHB(3), ECHS1(3), EHHADH(9), HADHA(7), HADHB(5), HIBADH(4), HMGCL(3), IVD(4), MCCC1(11), MCCC2(7), MUT(7), OXCT1(10), PCCA(10), PCCB(8), SDS(3) 12155301 210 55 208 61 52 88 33 16 19 2 0.29 0.64 277 N_GLYCAN_DEGRADATION AGA, FLJ21865, FUCA1, FUCA2, GLB1, HEXA, HEXB, LCT, MAN2C1, MANBA, NEU1, NEU2, NEU3, NEU4 12 AGA(4), FUCA1(3), FUCA2(3), GLB1(9), HEXA(3), HEXB(4), LCT(30), MAN2C1(8), MANBA(14), NEU2(5), NEU3(3) 5536196 86 39 85 28 27 30 14 5 10 0 0.29 0.64 278 PEPTIDE_GPCRS AGTR1, AGTR2, ATP8A1, AVPR1A, AVPR1B, AVPR2, BDKRB1, BDKRB2, BLR1, BRS3, C3AR1, C5R1, CCKAR, CCKBR, CCR1, CCR10, CCR2, CCR3, CCR4, CCR5, CCR6, CCR7, CCR8, CX3CR1, CXCR3, CXCR4, CXCR6, EDNRA, EDNRB, ELA3A, FPR1, FPRL1, FPRL2, FSHR, FY, GALR1, GALR2, GALR3, GALT, GHSR, GNB2L1, GNRHR, GPR77, GRPR, IL8RA, IL8RB, LHCGR, MC1R, MC2R, MC3R, MC4R, MC5R, NMBR, NPY1R, NPY2R, NPY5R, NPY6R, NTSR1, NTSR2, OPRD1, OPRK1, OPRL1, OPRM1, OXTR, PPYR1, SSTR1, SSTR2, SSTR3, SSTR4, TAC4, TACR1, TACR2, TACR3, TRHR, TSHR 61 AGTR2(8), ATP8A1(14), AVPR1A(8), AVPR1B(3), AVPR2(5), BDKRB1(5), BDKRB2(9), BRS3(13), C3AR1(7), CCKAR(12), CCKBR(7), CCR1(5), CCR2(6), CCR3(5), CCR4(5), CCR6(5), CCR7(5), CCR8(6), CX3CR1(4), CXCR3(5), CXCR4(1), CXCR6(3), EDNRA(6), EDNRB(2), FPR1(4), FSHR(17), GALR1(2), GALR3(3), GALT(2), GHSR(7), GNB2L1(2), GNRHR(4), GPR77(3), GRPR(4), LHCGR(16), MC2R(2), MC3R(8), MC4R(7), MC5R(12), NMBR(4), NPY1R(6), NPY2R(4), NPY5R(10), NTSR1(4), NTSR2(2), OPRD1(2), OPRK1(9), OPRM1(11), OXTR(4), PPYR1(7), SSTR2(3), SSTR3(6), TAC4(1), TACR1(6), TACR2(4), TACR3(9), TRHR(5), TSHR(12) 16498648 351 65 345 131 93 155 49 15 39 0 0.29 0.64 279 HSA02010_ABC_TRANSPORTERS_GENERAL Genes involved in ABC transporters - general ABCA1, ABCA10, ABCA12, ABCA13, ABCA2, ABCA3, ABCA4, ABCA5, ABCA6, ABCA7, ABCA8, ABCA9, ABCB1, ABCB10, ABCB11, ABCB4, ABCB5, ABCB6, ABCB7, ABCB8, ABCB9, ABCC1, ABCC10, ABCC11, ABCC12, ABCC2, ABCC3, ABCC4, ABCC5, ABCC6, ABCC8, ABCC9, ABCD1, ABCD2, ABCD3, ABCD4, ABCG1, ABCG2, ABCG4, ABCG5, ABCG8, CFTR, TAP1, TAP2 41 ABCA1(30), ABCA10(27), ABCA12(50), ABCA13(82), ABCA3(19), ABCA4(26), ABCA5(27), ABCA6(24), ABCA8(29), ABCA9(29), ABCB1(28), ABCB10(12), ABCB11(18), ABCB4(29), ABCB5(26), ABCB6(13), ABCB7(16), ABCB8(6), ABCB9(11), ABCC1(23), ABCC10(14), ABCC11(23), ABCC12(24), ABCC2(30), ABCC3(14), ABCC4(12), ABCC5(20), ABCC6(16), ABCC8(19), ABCC9(34), ABCD2(8), ABCD3(9), ABCD4(3), ABCG1(9), ABCG2(8), ABCG4(10), ABCG5(3), ABCG8(9), CFTR(13), TAP1(7), TAP2(2) 38956044 812 99 782 199 212 316 105 49 110 20 0.29 0.64 280 RECKPATHWAY RECK is a membrane-anchored inhibitor of matrix metalloproteinases, which are expressed by tumor cells and promote metastasis. HRAS, MMP14, MMP2, MMP9, RECK, TIMP1, TIMP2, TIMP3, TIMP4 9 MMP14(5), MMP2(11), MMP9(14), RECK(16), TIMP1(5), TIMP2(3), TIMP3(8), TIMP4(1) 2612748 63 28 61 22 21 27 8 1 6 0 0.29 0.64 281 HSA00550_PEPTIDOGLYCAN_BIOSYNTHESIS Genes involved in peptidoglycan biosynthesis GLUL, PGLYRP2 2 GLUL(6), PGLYRP2(8) 652231 14 12 13 7 5 5 1 0 3 0 0.29 0.64 282 UBIQUITIN_MEDIATED_PROTEOLYSIS CDC34, HIP2, NRF1, UBE1, UBE2A, UBE2B, UBE2C, UBE2D1, UBE2D2, UBE2D3, UBE2E1, UBE2E3, UBE2G1, UBE2G2, UBE2G2, TAX1BP3, UBE2H, UBE2I, UBE2J1, UBE2J2, UBE2L3, UBE2L6, UBE2M, UBE2N, UBE2S, UBE3A 22 NRF1(6), TAX1BP3(1), UBE2A(4), UBE2B(3), UBE2C(1), UBE2D2(3), UBE2D3(3), UBE2E1(3), UBE2E3(8), UBE2G1(2), UBE2H(3), UBE2J1(5), UBE2L3(4), UBE2L6(1), UBE2M(1), UBE2N(4), UBE3A(13) 3369183 65 31 65 23 12 26 14 1 12 0 0.29 0.64 283 EDG1PATHWAY The lipid S1P is an EDG1 ligand promoting chemotaxis via Rac1 and cell survival and proliferation via ERK activation. ADCY1, AKT1, ARHA, ASAH1, EDG1, GNAI1, GNB1, GNGT1, ITGAV, ITGB3, MAPK1, MAPK3, PDGFA, PDGFRA, PIK3CA, PIK3R1, PLCB1, PRKCA, PRKCB1, PTK2, RAC1, SKIP, SMPD1, SMPD2, SPHK1, SRC 19 ADCY1(17), AKT1(8), ASAH1(9), GNAI1(4), GNB1(3), ITGAV(10), ITGB3(16), MAPK1(2), MAPK3(4), PDGFRA(29), PLCB1(6), PRKCA(10), PTK2(11), SMPD1(12), SMPD2(5), SPHK1(2), SRC(2) 8016538 150 45 144 44 32 65 20 11 20 2 0.30 0.64 284 CYANOAMINO_ACID_METABOLISM ATP6V0C, SHMT1, GBA3, GGT1, SHMT1, SHMT2 5 ATP6V0C(2), GBA3(9), GGT1(10), SHMT1(6), SHMT2(8) 1487297 35 20 32 7 12 11 4 0 6 2 0.30 0.65 285 AGPCRPATHWAY G-protein coupled receptors (GPCRs) transduce extracellular signals across the plasma membrane; attenuation occurs by signal molecule degradation or receptor-mediated endocytosis. ARRB1, GNAS, GNB1, GNGT1, GPRK2L, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, PRKCA, PRKCB1 10 ARRB1(7), GNAS(25), GNB1(3), PRKACB(2), PRKACG(6), PRKAR1A(4), PRKAR2A(4), PRKAR2B(5), PRKCA(10) 2929901 66 31 62 20 17 31 5 4 9 0 0.30 0.65 286 RANKLPATHWAY RANK is a TNF-type receptor that promotes osteoclast differentiation and consequent bone resorbtion on binding RANK ligand produced by osteoblasts. FOS, FOSL1, FOSL2, IFNAR1, IFNAR2, IFNB1, ISGF3G, MAPK8, NFKB1, PRKR, RELA, TNFRSF11A, TNFSF11, TRAF6 12 FOS(6), FOSL1(4), FOSL2(7), IFNAR1(9), IFNAR2(8), IFNB1(4), MAPK8(7), NFKB1(12), RELA(6), TNFRSF11A(6), TNFSF11(6), TRAF6(4) 3892354 79 33 75 16 20 28 18 4 9 0 0.31 0.66 287 HEME_BIOSYNTHESIS ALAD, ALAS1, ALAS2, CPOX, FECH, HMBS, PPOX, UROD, UROS 9 ALAD(3), ALAS1(12), ALAS2(11), CPOX(8), FECH(5), HMBS(7), UROD(2), UROS(3) 2723883 51 24 49 9 9 25 6 3 8 0 0.31 0.66 288 COMPPATHWAY Both the classic and alternative immune complement pathways promote inflammation, foreign cell lysis, and phagocytosis. BF, C1QA, C1QB, C1QG, C1R, C1S, C2, C3, C4A, C4B, C5, C6, C7, C8A, C9, DF, MASP1, MASP2, MBL2 13 C1QA(6), C1QB(3), C1R(15), C1S(9), C2(6), C3(24), C5(20), C6(23), C7(21), C8A(12), MASP1(14), MASP2(6), MBL2(3) 7031380 162 44 155 48 36 75 21 7 19 4 0.31 0.66 289 HSA03030_DNA_POLYMERASE Genes involved in DNA polymerase POLA1, POLA2, POLB, POLD1, POLD2, POLD3, POLD4, POLE, POLE2, POLE3, POLE4, POLG, POLG2, POLH, POLI, POLK, POLL, POLM, POLQ, POLS, PRIM1, PRIM2, REV1, REV3L, RFC5 23 POLA1(26), POLB(4), POLD1(15), POLD2(6), POLD3(6), POLD4(1), POLE(1), POLE2(4), POLE3(2), POLG(7), POLG2(8), POLH(13), POLI(13), POLK(12), POLL(8), POLQ(23), PRIM1(2), PRIM2(7), REV1(13), REV3L(40), RFC5(7) 14380391 218 62 210 55 60 77 34 10 35 2 0.31 0.66 290 BCRPATHWAY B cell antigen receptors (BCRs) activate tyrosine kinases and transiently increase tyrosine phosphorylation on binding to antigen. BLNK, BTK, CALM1, CALM2, CALM3, CD79A, CD79B, ELK1, FOS, GRB2, HRAS, JUN, LYN, MAP2K1, MAP3K1, MAPK14, MAPK3, MAPK8, NFATC1, NFATC2, NFATC3, NFATC4, PLCG1, PPP3CA, PPP3CB, PPP3CC, PRKCA, PRKCB1, RAC1, RAF1, SHC1, SOS1, SYK, SYT1, VAV1 33 BLNK(4), BTK(11), CALM2(3), CALM3(1), CD79A(1), CD79B(2), ELK1(2), FOS(6), GRB2(3), JUN(1), LYN(7), MAP2K1(2), MAPK14(6), MAPK3(4), MAPK8(7), NFATC2(15), NFATC3(12), NFATC4(8), PLCG1(12), PPP3CA(4), PPP3CB(7), PPP3CC(6), PRKCA(10), RAF1(7), SHC1(11), SOS1(21), SYK(6), SYT1(4), VAV1(16) 12090532 199 56 193 63 62 69 29 11 24 4 0.31 0.66 291 HSA00150_ANDROGEN_AND_ESTROGEN_METABOLISM Genes involved in androgen and estrogen metabolism AKR1C4, AKR1D1, ARSD, ARSE, CARM1, CYP11B1, CYP11B2, CYP19A1, HEMK1, HSD11B1, HSD11B2, HSD17B1, HSD17B12, HSD17B2, HSD17B3, HSD17B7, HSD17B8, HSD3B1, HSD3B2, LCMT1, LCMT2, METTL2B, METTL6, PRMT2, PRMT3, PRMT5, PRMT6, PRMT7, PRMT8, SRD5A1, SRD5A2, STS, SULT1E1, SULT2A1, SULT2B1, UGT1A1, UGT1A10, UGT1A3, UGT1A4, UGT1A5, UGT1A6, UGT1A7, UGT1A8, UGT1A9, UGT2A1, UGT2A3, UGT2B10, UGT2B11, UGT2B15, UGT2B17, UGT2B28, UGT2B4, UGT2B7, WBSCR22 54 AKR1C4(5), AKR1D1(8), ARSD(9), ARSE(7), CARM1(6), CYP11B1(6), CYP11B2(7), CYP19A1(12), HEMK1(2), HSD11B1(4), HSD17B1(3), HSD17B12(4), HSD17B2(3), HSD17B3(6), HSD17B7(4), HSD17B8(2), HSD3B1(1), HSD3B2(5), LCMT1(4), LCMT2(13), METTL2B(3), METTL6(2), PRMT3(10), PRMT5(11), PRMT6(6), PRMT7(4), PRMT8(9), SRD5A1(4), SRD5A2(4), STS(9), SULT1E1(13), SULT2A1(7), SULT2B1(4), UGT1A1(6), UGT1A10(8), UGT1A3(4), UGT1A4(4), UGT1A5(7), UGT1A6(5), UGT1A7(9), UGT1A8(4), UGT1A9(4), UGT2A1(9), UGT2A3(5), UGT2B10(14), UGT2B11(22), UGT2B15(9), UGT2B17(4), UGT2B28(14), UGT2B4(10), UGT2B7(10), WBSCR22(9) 16832770 354 61 340 92 96 136 50 23 43 6 0.31 0.66 292 EXTRINSICPATHWAY The extrinsic prothrombin activation pathway requires the release of thromboplastin from damaged tissues to activate the blood clotting cascade. F10, F2, F2R, F3, F5, F7, FGA, FGB, FGG, PROC, PROS1, SERPINC1, TFPI 13 F10(10), F2(9), F2R(8), F3(6), F5(46), F7(2), FGA(30), FGB(6), FGG(12), PROC(7), SERPINC1(9), TFPI(11) 5539542 156 41 150 31 53 59 22 10 12 0 0.32 0.67 293 GLUCOCORTICOID_MINERALOCORTICOID_METABOLISM CPN2, CYP11A1, CYP11B2, CYP17A1, HSD11B1, HSD11B2, HSD3B1, HSD3B2 8 CPN2(5), CYP11A1(10), CYP11B2(7), CYP17A1(3), HSD11B1(4), HSD3B1(1), HSD3B2(5) 2460027 35 24 34 16 7 16 5 1 6 0 0.32 0.67 294 VITCBPATHWAY Vitamin C (ascorbic acid), in addition to its role in collagen modification, serves as an antioxidant and is imported into cells by Svct2 in the brain and Svct1 in intestinal epithelium. COL4A1, COL4A2, COL4A3, COL4A4, COL4A5, COL4A6, P4HB, SLC23A1, SLC23A2, SLC2A1, SLC2A3 11 COL4A1(23), COL4A2(11), COL4A3(24), COL4A4(24), COL4A5(27), COL4A6(35), P4HB(1), SLC23A1(11), SLC23A2(5), SLC2A1(6), SLC2A3(14) 8897731 181 50 173 55 49 73 17 10 24 8 0.32 0.67 295 HSA00630_GLYOXYLATE_AND_DICARBOXYLATE_METABOLISM Genes involved in glyoxylate and dicarboxylate metabolism ACO1, ACO2, AFMID, CS, GRHPR, HAO1, HAO2, HYI, LOC441996, MDH1, MDH2, MTHFD1, MTHFD1L, MTHFD2 13 ACO1(13), ACO2(8), AFMID(6), CS(5), GRHPR(4), HAO1(2), HAO2(7), HYI(2), MDH1(2), MDH2(5), MTHFD1(6), MTHFD1L(12), MTHFD2(3) 4704715 75 36 73 29 27 27 9 5 7 0 0.32 0.67 296 HSA04660_T_CELL_RECEPTOR_SIGNALING_PATHWAY Genes involved in T cell receptor signaling pathway AKT1, AKT2, AKT3, BCL10, CARD11, CBL, CBLB, CBLC, CD247, CD28, CD3D, CD3E, CD3G, CD4, CD40LG, CD8A, CD8B, CDC42, CDK4, CHP, CHUK, CSF2, CTLA4, FOS, FYN, GRAP2, GRB2, HRAS, ICOS, IFNG, IKBKB, IKBKG, IL10, IL2, IL4, IL5, ITK, JUN, KRAS, LAT, LCK, LCP2, MALT1, MAP3K14, MAP3K8, NCK1, NCK2, NFAT5, NFATC1, NFATC2, NFATC3, NFATC4, NFKB1, NFKB2, NFKBIA, NFKBIB, NFKBIE, NRAS, PAK1, PAK2, PAK3, PAK4, PAK6, PAK7, PDCD1, PDK1, PIK3CA, PIK3CB, PIK3CD, PIK3CG, PIK3R1, PIK3R2, PIK3R3, PIK3R5, PLCG1, PPP3CA, PPP3CB, PPP3CC, PPP3R1, PPP3R2, PRKCQ, PTPN6, PTPRC, RASGRP1, RHOA, SOS1, SOS2, TEC, TNF, VAV1, VAV2, VAV3, ZAP70 87 AKT1(8), AKT2(4), AKT3(8), BCL10(2), CARD11(16), CBL(10), CBLB(15), CBLC(5), CD247(5), CD28(6), CD3D(3), CD3E(2), CD3G(2), CD4(8), CD40LG(7), CD8A(3), CD8B(1), CDC42(5), CDK4(4), CHUK(11), CTLA4(2), FOS(6), FYN(7), GRAP2(3), GRB2(3), ICOS(2), IFNG(5), IKBKB(15), IL10(4), IL2(4), IL5(2), ITK(10), JUN(1), LCK(5), LCP2(7), MALT1(4), MAP3K14(12), MAP3K8(12), NCK1(4), NCK2(8), NFAT5(13), NFATC2(15), NFATC3(12), NFATC4(8), NFKB1(12), NFKB2(10), NFKBIA(3), NFKBIB(3), NFKBIE(6), PAK1(3), PAK2(6), PAK3(14), PAK4(2), PAK6(3), PAK7(12), PDK1(7), PIK3CB(19), PIK3CD(10), PIK3CG(25), PIK3R2(4), PIK3R3(8), PIK3R5(8), PLCG1(12), PPP3CA(4), PPP3CB(7), PPP3CC(6), PPP3R1(2), PPP3R2(1), PRKCQ(13), PTPRC(15), RASGRP1(8), RHOA(4), SOS1(21), SOS2(22), TEC(5), TNF(1), VAV1(16), VAV2(5), VAV3(13), ZAP70(10) 32397645 609 87 594 188 163 242 81 32 85 6 0.32 0.67 297 UBIQUINONE_BIOSYNTHESIS NDUFA1, NDUFA10, NDUFA11, NDUFA4, NDUFA5, NDUFA8, NDUFB2, NDUFB4, NDUFB5, NDUFB6, NDUFB7, NDUFS1, NDUFS2, NDUFV1, NDUFV2 11 NDUFA1(1), NDUFA10(8), NDUFA4(2), NDUFA8(6), NDUFB5(2), NDUFB6(1), NDUFS1(13), NDUFS2(5), NDUFV1(4), NDUFV2(3) 2170120 45 23 44 13 12 23 4 3 3 0 0.32 0.67 298 ERBB4PATHWAY ErbB4 (aka HER4) is a receptor tyrosine kinase that binds neuregulins as well as members of the EGF family, which also target EGF receptors. ADAM17, ERBB4, NRG2, NRG3, PRKCA, PRKCB1, PSEN1 6 ADAM17(11), ERBB4(29), NRG2(6), NRG3(15), PRKCA(10), PSEN1(4) 3085490 75 28 74 22 15 28 14 9 9 0 0.32 0.67 299 PLCEPATHWAY Gs-coupled receptors activate adenylyl cyclase, which activates Epac1, leading to the stimulation of PLC and subsequent DAG and IP3 production. ADCY1, ADRB2, GNAS, PLCE1, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, PTGER1, RAP2B 10 ADCY1(17), ADRB2(8), GNAS(25), PLCE1(36), PRKACB(2), PRKACG(6), PRKAR1A(4), PRKAR2A(4), PRKAR2B(5) 4663846 107 39 102 28 24 47 17 6 13 0 0.32 0.67 300 HSA00830_RETINOL_METABOLISM Genes involved in retinol metabolism ALDH1A1, ALDH1A2, BCMO1, RDH5 4 ALDH1A1(6), ALDH1A2(9), BCMO1(4), RDH5(6) 1363973 25 18 25 16 8 9 1 1 6 0 0.33 0.67 301 AMINOSUGARS_METABOLISM CMAS, CYB5R3, GCK, GFPT1, GNE, GNPDA1, GNPDA2, HEXA, HEXB, HK1, HK2, HK3, PGM3, RENBP, UAP1 15 CMAS(6), CYB5R3(5), GCK(5), GFPT1(11), GNE(8), GNPDA1(3), GNPDA2(5), HEXA(3), HEXB(4), HK1(13), HK2(8), HK3(12), PGM3(6), RENBP(6), UAP1(8) 5825386 103 40 100 37 25 40 17 10 11 0 0.33 0.67 302 HSA00072_SYNTHESIS_AND_DEGRADATION_OF_KETONE_BODIES Genes involved in synthesis and degradation of ketone bodies ACAT1, ACAT2, BDH1, BDH2, HMGCL, HMGCS1, HMGCS2, OXCT1, OXCT2 9 ACAT1(6), ACAT2(5), BDH1(6), BDH2(6), HMGCL(3), HMGCS1(4), HMGCS2(8), OXCT1(10), OXCT2(2) 2438278 50 28 49 7 17 22 3 2 4 2 0.33 0.67 303 GANGLIOSIDE_BIOSYNTHESIS B3GALT4, GALGT, SIAT4A, SIAT4B, SIAT7B, SIAT7D, SIAT9, ST3GAL1, ST3GAL2, ST3GAL4, ST3GAL5, ST6GALNAC2, ST6GALNAC4, ST8SIA1 8 B3GALT4(6), ST3GAL1(2), ST3GAL2(4), ST3GAL4(4), ST3GAL5(2), ST6GALNAC2(3), ST6GALNAC4(5), ST8SIA1(4) 1830979 30 21 30 11 13 10 5 0 2 0 0.33 0.68 304 EPONFKBPATHWAY The cytokine erythropoietin (Epo) prevents stress-induced neuronal apoptosis by stimulating anti-apoptotic pathways through JAK2 kinase and NF-kB. ARNT, CDKN1A, EPO, EPOR, GRIN1, HIF1A, JAK2, NFKB1, NFKBIA, RELA, SOD2 11 ARNT(7), CDKN1A(1), EPO(2), EPOR(4), GRIN1(5), HIF1A(17), JAK2(21), NFKB1(12), NFKBIA(3), RELA(6), SOD2(3) 4247030 81 30 80 20 15 27 17 5 11 6 0.34 0.68 305 ACHPATHWAY Nicotinic acetylcholine receptors are ligand-gated ion channels that primarily mediate neuromuscular signaling and may inhibit neuronal apoptosis via the AKT pathway. AKT1, BAD, CHRNB1, CHRNG, FOXO3A, MUSK, PIK3CA, PIK3R1, PTK2, PTK2B, RAPSN, SRC, TERT, TNFSF6, YWHAH 11 AKT1(8), BAD(2), CHRNB1(3), CHRNG(9), MUSK(16), PTK2(11), PTK2B(16), RAPSN(4), SRC(2), TERT(6), YWHAH(4) 4081164 81 33 78 38 25 35 10 6 5 0 0.34 0.68 306 MPRPATHWAY Progesterone binding to its intracellular receptor activates the MAPK pathway and induces oocyte maturation; binding to membrane receptor inhibits adenylyl cyclase. ACTA1, ADCY1, CAP1, CCNB1, CDC2, CDC25C, GNAI1, GNAS, GNB1, GNGT1, HRAS, MAPK1, MAPK3, MYT1, PIN1, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, RPS6KA1, SRC 21 ACTA1(4), ADCY1(17), CAP1(7), CCNB1(8), CDC25C(8), GNAI1(4), GNAS(25), GNB1(3), MAPK1(2), MAPK3(4), PIN1(1), PRKACB(2), PRKACG(6), PRKAR1A(4), PRKAR2A(4), PRKAR2B(5), RPS6KA1(5), SRC(2) 6402093 111 43 105 27 23 50 13 5 20 0 0.34 0.68 307 41BBPATHWAY TNF-type receptor 4-1BB is bound by TRAF1 to activate the MAP kinase pathway in activated T cells. ATF2, CHUK, IFNG, IKBKB, IL2, IL4, JUN, MAP3K1, MAP3K5, MAP4K5, MAPK14, MAPK8, NFKB1, NFKBIA, RELA, TNFRSF9, TNFSF9, TRAF2 16 ATF2(6), CHUK(11), IFNG(5), IKBKB(15), IL2(4), JUN(1), MAP3K5(21), MAP4K5(7), MAPK14(6), MAPK8(7), NFKB1(12), NFKBIA(3), RELA(6), TNFRSF9(3), TRAF2(5) 5854066 112 37 108 34 23 50 16 6 17 0 0.34 0.68 308 ECMPATHWAY Extracellular matrix induces integrin-mediated FAK phosphorylation in epithelial cells, leading to PI3 and MAP kinase activation and actin reorganization. ARHA, ARHGAP5, DIAPH1, FYN, GSN, HRAS, ITGA1, ITGB1, MAP2K1, MAPK1, MAPK3, MYL2, MYLK, PFN1, PIK3CA, PIK3R1, PTK2, PXN, RAF1, ROCK1, SHC1, SRC, TLN1 20 ARHGAP5(24), DIAPH1(11), FYN(7), GSN(5), ITGA1(20), ITGB1(12), MAP2K1(2), MAPK1(2), MAPK3(4), MYL2(1), MYLK(17), PFN1(1), PTK2(11), PXN(6), RAF1(7), ROCK1(27), SHC1(11), SRC(2), TLN1(28) 11969837 198 55 193 43 54 81 23 7 29 4 0.34 0.68 309 HSA04662_B_CELL_RECEPTOR_SIGNALING_PATHWAY Genes involved in B cell receptor signaling pathway AKT1, AKT2, AKT3, BCL10, BLNK, BTK, CARD11, CD19, CD22, CD72, CD79A, CD79B, CD81, CHP, CHUK, CR2, FCGR2B, FOS, GSK3B, HRAS, IFITM1, IKBKB, IKBKG, INPP5D, JUN, KRAS, LILRB3, LYN, MALT1, NFAT5, NFATC1, NFATC2, NFATC3, NFATC4, NFKB1, NFKB2, NFKBIA, NFKBIB, NFKBIE, NRAS, PIK3CA, PIK3CB, PIK3CD, PIK3CG, PIK3R1, PIK3R2, PIK3R3, PIK3R5, PLCG2, PPP3CA, PPP3CB, PPP3CC, PPP3R1, PPP3R2, PRKCB1, PTPN6, RAC1, RAC2, RAC3, RASGRP3, SYK, VAV1, VAV2, VAV3 55 AKT1(8), AKT2(4), AKT3(8), BCL10(2), BLNK(4), BTK(11), CARD11(16), CD19(7), CD22(13), CD72(3), CD79A(1), CD79B(2), CHUK(11), FCGR2B(4), FOS(6), GSK3B(11), IKBKB(15), INPP5D(14), JUN(1), LILRB3(2), LYN(7), MALT1(4), NFAT5(13), NFATC2(15), NFATC3(12), NFATC4(8), NFKB1(12), NFKB2(10), NFKBIA(3), NFKBIB(3), NFKBIE(6), PIK3CB(19), PIK3CD(10), PIK3CG(25), PIK3R2(4), PIK3R3(8), PIK3R5(8), PLCG2(27), PPP3CA(4), PPP3CB(7), PPP3CC(6), PPP3R1(2), PPP3R2(1), RAC2(2), RASGRP3(8), SYK(6), VAV1(16), VAV2(5), VAV3(13) 22179917 407 72 399 146 111 166 54 20 54 2 0.34 0.68 310 COMPLEMENT_ACTIVATION_CLASSICAL C1QA, C1QB, C1QG, C1R, C1S, C2, C3, C4A, C4B, C5, C6, C7, C8A, C8B, C9, DAF, MASP1 12 C1QA(6), C1QB(3), C1R(15), C1S(9), C2(6), C3(24), C5(20), C6(23), C7(21), C8A(12), C8B(4), MASP1(14) 6945340 157 43 149 44 33 73 21 7 19 4 0.34 0.68 311 PTC1PATHWAY The binding of extracellular signaling protein Sonic hedgehog to the Patched receptor (Ptc1) allows progression through G1 and may inhibit the G2/M transition. CCNB1, CCNH, CDC2, CDC25A, CDC25B, CDC25C, CDK7, MNAT1, PTCH, SHH, XPO1 9 CCNB1(8), CCNH(3), CDC25A(9), CDC25B(3), CDC25C(8), CDK7(6), MNAT1(2), SHH(7), XPO1(15) 3028608 61 28 58 13 16 22 11 3 9 0 0.34 0.68 312 SYNTHESIS_AND_DEGRADATION_OF_KETONE_BODIES ACAT1, ACAT2, BDH, HMGCL, OXCT1 4 ACAT1(6), ACAT2(5), HMGCL(3), OXCT1(10) 1166798 24 18 24 1 6 12 2 0 2 2 0.35 0.68 313 HSA05120_EPITHELIAL_CELL_SIGNALING_IN_HELICOBACTER_PYLORI_INFECTION Genes involved in epithelial cell signaling in Helicobacter pylori infection ADAM10, ADAM17, ATP6AP1, ATP6V0A1, ATP6V0A2, ATP6V0A4, ATP6V0B, ATP6V0C, ATP6V0D1, ATP6V0D2, ATP6V0E1, ATP6V1A, ATP6V1B1, ATP6V1B2, ATP6V1C1, ATP6V1C2, ATP6V1D, ATP6V1E1, ATP6V1E2, ATP6V1F, ATP6V1G1, ATP6V1G2, ATP6V1G3, ATP6V1H, CASP3, CCL5, CDC42, CHUK, CSK, CXCL1, EGFR, F11R, GIT1, HBEGF, IGSF5, IKBKB, IKBKG, IL8, IL8RA, IL8RB, JAM2, JAM3, JUN, LYN, MAP2K4, MAP3K14, MAPK10, MAPK11, MAPK12, MAPK13, MAPK14, MAPK8, MAPK9, MET, NFKB1, NFKB2, NFKBIA, NOD1, PAK1, PLCG1, PLCG2, PTPN11, PTPRZ1, RAC1, RELA, SRC, TCIRG1, TJP1 62 ADAM10(4), ADAM17(11), ATP6AP1(7), ATP6V0A1(5), ATP6V0A2(11), ATP6V0A4(14), ATP6V0B(2), ATP6V0C(2), ATP6V0D1(3), ATP6V0D2(10), ATP6V1A(7), ATP6V1B2(7), ATP6V1C1(3), ATP6V1C2(9), ATP6V1D(4), ATP6V1E1(3), ATP6V1E2(4), ATP6V1F(2), ATP6V1G1(1), ATP6V1G2(4), ATP6V1G3(2), ATP6V1H(5), CASP3(4), CCL5(4), CDC42(5), CHUK(11), CSK(1), CXCL1(1), EGFR(20), F11R(2), GIT1(9), HBEGF(3), IGSF5(9), IKBKB(15), IL8(3), JAM2(9), JAM3(3), JUN(1), LYN(7), MAP2K4(6), MAP3K14(12), MAPK10(9), MAPK13(2), MAPK14(6), MAPK8(7), MAPK9(7), MET(10), NFKB1(12), NFKB2(10), NFKBIA(3), NOD1(9), PAK1(3), PLCG1(12), PLCG2(27), PTPN11(8), PTPRZ1(43), RELA(6), SRC(2), TCIRG1(8), TJP1(33) 23503738 462 73 454 151 116 195 63 22 62 4 0.35 0.69 314 NO2IL12PATHWAY Macrophages activate NK cells by releasing IL-12, which induces NK cytotoxic activity in coordination with NO produced by inducible nitric oxide synthase II. CCR5, CD2, CD3D, CD3E, CD3G, CD3Z, CD4, CXCR3, IFNG, IL12A, IL12B, IL12RB1, IL12RB2, JAK2, NOS2A, STAT4, TYK2 14 CD2(4), CD3D(3), CD3E(2), CD3G(2), CD4(8), CXCR3(5), IFNG(5), IL12A(7), IL12B(3), IL12RB1(16), IL12RB2(11), JAK2(21), STAT4(9), TYK2(7) 4986735 103 36 100 26 19 44 12 8 14 6 0.36 0.70 315 INTRINSICPATHWAY The intrinsic prothrombin activation pathway is activated by traumatized blood vessels and induces clot formation. COL4A1, COL4A2, COL4A3, COL4A4, COL4A5, COL4A6, F10, F11, F12, F2, F2R, F5, F8, F9, FGA, FGB, FGG, KLKB1, KNG, PROC, PROS1, SERPINC1, SERPING1 22 COL4A1(23), COL4A2(11), COL4A3(24), COL4A4(24), COL4A5(27), COL4A6(35), F10(10), F11(10), F12(3), F2(9), F2R(8), F5(46), F8(41), F9(11), FGA(30), FGB(6), FGG(12), KLKB1(13), PROC(7), SERPINC1(9), SERPING1(7) 15568221 366 64 351 82 105 142 48 23 40 8 0.36 0.71 316 NEUTROPHILPATHWAY Neutrophils are phagocytotic leukocytes that destroy foreign cells with reactive oxygen species or enzymatic digestion and express CD11 and CD18. CD44, ICAM1, ITGAL, ITGAM, ITGB2, PECAM1, SELE, SELL 8 CD44(12), ICAM1(3), ITGAL(13), ITGAM(24), ITGB2(14), SELE(10), SELL(4) 4144977 80 34 78 24 19 33 12 4 10 2 0.36 0.71 317 SA_G2_AND_M_PHASES Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition. CDC2, CDC25A, CDC25B, CDK7, CDKN1A, CHEK1, NEK1, WEE1 7 CDC25A(9), CDC25B(3), CDK7(6), CDKN1A(1), CHEK1(4), NEK1(20), WEE1(1) 2580483 44 26 41 12 13 15 5 3 8 0 0.37 0.71 318 CHREBPPATHWAY Carbohydrate responsive element binding protein (chREBP) is a transcription factor inhibited by cAMP and activated by high carbohydrate levels. ADCY1, BG1, BUCS1, GNAS, GNB1, GNGT1, PPP2CA, PRKAA1, PRKAA2, PRKAB1, PRKAB2, PRKACB, PRKACG, PRKAG1, PRKAG2, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, WBSCR14 16 ADCY1(17), GNAS(25), GNB1(3), PPP2CA(6), PRKAA1(6), PRKAA2(9), PRKAB1(7), PRKAB2(2), PRKACB(2), PRKACG(6), PRKAG1(2), PRKAG2(4), PRKAR1A(4), PRKAR2A(4), PRKAR2B(5) 4833775 102 37 97 27 21 53 8 6 14 0 0.37 0.71 319 OXIDATIVE_PHOSPHORYLATION ATP12A, ATP4B, ATP5E, ATP5O, ATP6AP1, ATP6V0A1, ATP6V0A4, ATP6V0B, ATP6V0C, ATP6V0C, SHMT1, ATP6V0D1, ATP6V0E, ATP6V1A, ATP6V1B1, ATP6V1B2, ATP6V1C1, ATP6V1C2, ATP6V1D, ATP6V1E1, ATP6V1F, ATP6V1G1, ATP6V1G2, ATP6V1G3, ATP6V1H, ATP7A, ATP7B, COX10, COX4I1, COX5A, COX5B, COX6A1, COX6A2, COX6B1, COX6C, COX7A1, COX7A2, COX7B, COX7C, COX8A, NDUFA1, NDUFA10, NDUFA11, NDUFA4, NDUFA5, NDUFA8, NDUFB2, NDUFB4, NDUFB5, NDUFB6, NDUFB7, NDUFS1, NDUFS2, NDUFV1, NDUFV2, PP, PPA2, SDHA, SDHA, SDHAL2, SDHB, UQCRB, UQCRC1, UQCRFS1, UQCRH 52 ATP12A(17), ATP4B(2), ATP5E(1), ATP5O(1), ATP6AP1(7), ATP6V0A1(5), ATP6V0A4(14), ATP6V0B(2), ATP6V0C(2), ATP6V0D1(3), ATP6V1A(7), ATP6V1B2(7), ATP6V1C1(3), ATP6V1C2(9), ATP6V1D(4), ATP6V1E1(3), ATP6V1F(2), ATP6V1G1(1), ATP6V1G2(4), ATP6V1G3(2), ATP6V1H(5), ATP7B(13), COX10(5), COX4I1(2), COX5A(1), COX5B(1), COX6A1(2), COX6B1(4), COX6C(2), COX7A2(2), COX7B(2), COX7C(2), COX8A(1), NDUFA1(1), NDUFA10(8), NDUFA4(2), NDUFA8(6), NDUFB5(2), NDUFB6(1), NDUFS1(13), NDUFS2(5), NDUFV1(4), NDUFV2(3), PPA2(5), SDHA(12), SDHB(1), SHMT1(6), UQCRB(3), UQCRC1(6), UQCRH(1) 11571902 217 57 214 64 65 86 28 8 30 0 0.37 0.71 320 HSA00350_TYROSINE_METABOLISM Genes involved in tyrosine metabolism ABP1, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, ADHFE1, ALDH1A3, ALDH3A1, ALDH3B1, ALDH3B2, AOC2, AOC3, AOX1, ARD1A, CARM1, COMT, DBH, DCT, DDC, ECH1, ESCO1, ESCO2, FAH, GOT1, GOT2, GSTZ1, HEMK1, HGD, HPD, LCMT1, LCMT2, LYCAT, MAOA, MAOB, METTL2B, METTL6, MIF, MYST3, MYST4, NAT5, NAT6, PNMT, PNPLA3, PRMT2, PRMT3, PRMT5, PRMT6, PRMT7, PRMT8, SH3GLB1, TAT, TH, TPO, TYR, TYRP1, WBSCR22 52 ABP1(12), ADH1A(2), ADH1B(6), ADH1C(7), ADH4(5), ADH5(3), ADH6(9), ADH7(6), ADHFE1(7), ALDH3A1(6), ALDH3B1(5), ALDH3B2(8), AOC2(6), AOC3(14), AOX1(19), CARM1(6), DBH(12), DCT(15), DDC(11), ECH1(6), ESCO1(11), ESCO2(6), FAH(7), GOT1(6), GOT2(5), GSTZ1(4), HEMK1(2), HPD(7), LCMT1(4), LCMT2(13), MAOA(14), MAOB(7), METTL2B(3), METTL6(2), NAT6(2), PNMT(3), PNPLA3(6), PRMT3(10), PRMT5(11), PRMT6(6), PRMT7(4), PRMT8(9), SH3GLB1(8), TAT(9), TPO(18), TYR(10), TYRP1(6), WBSCR22(9) 19924235 367 64 357 92 94 149 55 19 46 4 0.37 0.71 321 REDUCTIVE_CARBOXYLATE_CYCLE_CO2_FIXATION ACO1, ACO2, FH, IDH1, IDH2, MDH1, MDH2, SDHB, SUCLA2 9 ACO1(13), ACO2(8), FH(11), IDH1(4), IDH2(7), MDH1(2), MDH2(5), SDHB(1), SUCLA2(5) 3132573 56 30 55 30 18 24 4 5 5 0 0.37 0.71 322 GALACTOSE_METABOLISM AKR1B1, B4GALT1, B4GALT2, FBP2, G6PC, GAA, GALE, GALK1, GALK2, GALT, GANAB, GCK, GLA, GLB1, HK1, HK2, HK3, LALBA, LCT, MGAM, PFKM, PFKP, PGM1, PGM3 24 AKR1B1(2), B4GALT1(2), B4GALT2(5), G6PC(6), GAA(5), GALE(2), GALK1(3), GALK2(3), GALT(2), GANAB(13), GCK(5), GLA(3), GLB1(9), HK1(13), HK2(8), HK3(12), LALBA(1), LCT(30), MGAM(49), PFKM(7), PFKP(11), PGM1(9), PGM3(6) 10815706 206 55 200 71 62 91 23 12 18 0 0.37 0.71 323 ST_IL_13_PATHWAY Like IL-4, IL-13 is produced by Th2 cells on activation of the T cell antigen receptor, and by mast and basophil cells on activation of the IgE receptor. IL13, IL13RA1, IL13RA2, IL4R, JAK1, JAK2, TYK2 6 IL13RA1(14), IL13RA2(3), IL4R(6), JAK2(21), TYK2(7) 2812074 51 26 50 15 9 16 11 4 5 6 0.37 0.71 324 ST_INTERLEUKIN_13_PATHWAY IL-13 is produced by Th2 cells on activation of the T cell antigen receptor, and by mast and basophil cells on activation of the IgE receptor. IL13, IL13RA1, IL13RA2, IL4R, JAK1, JAK2, TYK2 6 IL13RA1(14), IL13RA2(3), IL4R(6), JAK2(21), TYK2(7) 2812074 51 26 50 15 9 16 11 4 5 6 0.37 0.71 325 BUTANOATE_METABOLISM AACS, ABAT, ACADS, ACAT1, ACAT2, ALDH1A1, ALDH1A2, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH5A1, ALDH9A1, BDH, BUCS1, ECHS1, EHHADH, GAD1, GAD2, HADHA, HMGCL, L2HGDH, OXCT1, PDHA1, PDHA2, PDHB, SDHB, SDS 27 AACS(9), ABAT(9), ACADS(5), ACAT1(6), ACAT2(5), ALDH1A1(6), ALDH1A2(9), ALDH1B1(7), ALDH2(2), ALDH3A1(6), ALDH3A2(2), ALDH5A1(9), ALDH9A1(4), ECHS1(3), EHHADH(9), GAD1(8), GAD2(12), HADHA(7), HMGCL(3), L2HGDH(3), OXCT1(10), PDHA1(4), PDHA2(10), PDHB(7), SDHB(1), SDS(3) 8755048 159 47 154 44 39 68 22 11 17 2 0.38 0.71 326 IONPATHWAY Activated phospholipase C hydrolyzes the lipid PIP3 into second messengers DAG, which activates protein kinase C, and IP3, which induces calcium influx into the cytoplasm. P2RY2, PLCG1, PRKCA, PRKCB1, PTK2B 4 P2RY2(6), PLCG1(12), PRKCA(10), PTK2B(16) 2362515 44 25 42 24 12 17 6 5 4 0 0.38 0.72 327 FREEPATHWAY Neutrophils release superoxide to induce lysis in invading bacteria; in neighboring endothelial cells, superoxide dismutase scavenges radicals but produces pro-apoptotic peroxides. GPX1, GSR, GSS, IL8, NFKB1, NOX1, RELA, SOD1, TNF, XDH 10 GSR(5), GSS(5), IL8(3), NFKB1(12), NOX1(11), RELA(6), SOD1(2), TNF(1), XDH(10) 3572811 55 28 54 18 16 17 10 3 9 0 0.38 0.72 328 ST_JAK_STAT_PATHWAY The Janus kinase-signal transducer and activator of transcription (JAK-STAT) pathway transduces extracellular signals to promote gene activation. CISH, JAK1, JAK2, JAK3, PIAS1, PIAS3, PTPRU, REG1A, SOAT1 8 JAK2(21), JAK3(9), PIAS1(5), PIAS3(9), PTPRU(20), REG1A(4), SOAT1(10) 3970507 78 32 76 21 18 34 10 3 7 6 0.39 0.72 329 INTEGRINPATHWAY Integrins are cell surface receptors commonly present at focal adhensions that interact with the extracellular matrix and transduce extracellular signaling. ACTA1, ACTN1, ACTN2, ACTN3, ARHA, BCAR1, BCR, CAPN1, CAPNS1, CAPNS2, CAV1, CRKL, CSK, FYN, GRB2, GRF2, HRAS, ITGA1, ITGB1, JUN, MAP2K1, MAP2K2, MAPK1, MAPK3, MAPK8, PPP1R12B, PTK2, PXN, RAF1, RAP1A, ROCK1, SHC1, SOS1, SRC, TLN1, TNS, VCL, ZYX 33 ACTA1(4), ACTN1(13), ACTN2(9), ACTN3(10), BCR(6), CAPN1(4), CAPNS1(3), CAPNS2(6), CRKL(5), CSK(1), FYN(7), GRB2(3), ITGA1(20), ITGB1(12), JUN(1), MAP2K1(2), MAPK1(2), MAPK3(4), MAPK8(7), PPP1R12B(18), PTK2(11), PXN(6), RAF1(7), RAP1A(3), ROCK1(27), SHC1(11), SOS1(21), SRC(2), TLN1(28), VCL(14), ZYX(12) 15465451 279 64 270 75 85 111 28 9 40 6 0.39 0.73 330 HSA03020_RNA_POLYMERASE Genes involved in RNA polymerase POLR1A, POLR1B, POLR1C, POLR1D, POLR2A, POLR2B, POLR2C, POLR2D, POLR2E, POLR2F, POLR2G, POLR2H, POLR2I, POLR2J, POLR2K, POLR2L, POLR3A, POLR3B, POLR3G, POLR3GL, POLR3H, POLR3K, ZNRD1 23 POLR1A(15), POLR1B(16), POLR1C(4), POLR1D(2), POLR2A(25), POLR2B(20), POLR2C(5), POLR2D(3), POLR2E(1), POLR2F(2), POLR2H(3), POLR2K(2), POLR3A(9), POLR3B(7), POLR3G(2), POLR3GL(2), POLR3H(3), ZNRD1(1) 8165674 122 43 120 42 34 47 10 11 20 0 0.39 0.74 331 MSPPATHWAY Macrophage stimulating protein is synthesized as pro-MSP by the liver and, on proteolysis, binds to monocyte receptor kinase RON to induce macrophage development. CCL2, CSF1, IL1B, MST1, MST1R, TNF 6 CSF1(5), IL1B(2), MST1(6), MST1R(17), TNF(1) 2108219 31 19 30 13 12 10 1 1 7 0 0.40 0.74 332 HSA01031_GLYCAN_STRUCTURES_BIOSYNTHESIS_2 Genes involved in glycan structures - biosynthesis 2 A4GALT, ABO, B3GALNT1, B3GALT1, B3GALT2, B3GALT4, B3GALT5, B3GNT1, B3GNT2, B3GNT3, B3GNT4, B3GNT5, B4GALNT1, B4GALT1, B4GALT2, B4GALT3, B4GALT4, B4GALT6, FUT1, FUT2, FUT3, FUT4, FUT5, FUT6, FUT7, FUT9, GBGT1, GCNT2, PIGA, PIGB, PIGC, PIGF, PIGG, PIGH, PIGK, PIGL, PIGM, PIGN, PIGO, PIGP, PIGQ, PIGS, PIGT, PIGU, PIGV, PIGX, PIGZ, ST3GAL1, ST3GAL2, ST3GAL3, ST3GAL4, ST3GAL5, ST3GAL6, ST6GALNAC3, ST6GALNAC4, ST6GALNAC5, ST6GALNAC6, ST8SIA1, ST8SIA5, UGCG, UGCGL1, UGCGL2 55 B3GALNT1(5), B3GALT1(10), B3GALT2(8), B3GALT4(6), B3GALT5(6), B3GNT1(7), B3GNT2(4), B3GNT3(2), B3GNT4(5), B3GNT5(6), B4GALNT1(5), B4GALT1(2), B4GALT2(5), B4GALT3(8), B4GALT4(3), B4GALT6(5), FUT1(5), FUT2(3), FUT3(9), FUT6(13), FUT9(12), GBGT1(6), GCNT2(17), PIGA(8), PIGB(10), PIGC(4), PIGF(4), PIGG(12), PIGH(3), PIGK(6), PIGL(1), PIGN(9), PIGO(15), PIGP(2), PIGS(3), PIGT(10), PIGU(3), PIGV(6), PIGX(2), PIGZ(6), ST3GAL1(2), ST3GAL2(4), ST3GAL3(6), ST3GAL4(4), ST3GAL5(2), ST3GAL6(8), ST6GALNAC3(10), ST6GALNAC4(5), ST6GALNAC5(5), ST8SIA1(4), ST8SIA5(8), UGCG(5) 15349297 319 63 310 71 88 144 37 18 32 0 0.40 0.74 333 OVARIAN_INFERTILITY_GENES ATM, BMPR1B, CCND2, CDK4, CDKN1B, CEBPB, DAZL, DMC1, EGR1, ESR2, FSHR, GJA4, INHA, LHCGR, MLH1, MSH5, NCOR1, NR5A1, NRIP1, PGR, PRLR, PTGER2, SMPD1, VDR, ZP2 22 BMPR1B(6), CCND2(7), CDK4(4), CDKN1B(5), DAZL(5), DMC1(8), EGR1(8), ESR2(8), FSHR(17), GJA4(2), INHA(3), LHCGR(16), MLH1(8), MSH5(15), NCOR1(24), NRIP1(18), PGR(9), PRLR(6), PTGER2(5), SMPD1(12), VDR(9), ZP2(15) 9722759 210 50 202 54 42 98 24 9 35 2 0.40 0.74 334 INOSITOL_PHOSPHATE_METABOLISM IMPA1, INPP1, INPP4A, INPP4B, INPP5A, INPPL1, ITPKA, ITPKB, MIOX, OCRL, PIK3C2A, PIK3C2B, PIK3C2G, PIK3CA, PIK3CB, PIK3CG, PIK4CA, PIK4CA, LOC220686, PIP5K2B, PLCB1, PLCB2, PLCB3, PLCB4, PLCD1, PLCG1, PLCG2 19 IMPA1(4), INPP1(2), INPP4B(17), INPP5A(6), ITPKB(6), OCRL(20), PIK3C2A(20), PIK3C2B(15), PIK3C2G(22), PIK3CB(19), PIK3CG(25), PLCB1(6), PLCB2(9), PLCB3(9), PLCB4(20), PLCD1(5), PLCG1(12), PLCG2(27) 13373006 244 57 237 80 65 89 33 14 39 4 0.40 0.74 335 HSA00530_AMINOSUGARS_METABOLISM Genes involved in aminosugars metabolism AMDHD2, CHIA, CHIT1, CMAS, CTBS, CYB5R1, CYB5R3, GFPT1, GFPT2, GNE, GNPDA1, GNPDA2, GNPNAT1, HEXA, HEXB, HK1, HK2, HK3, LHPP, MTMR1, MTMR2, MTMR6, NAGK, NANS, NPL, PGM3, PHPT1, RENBP, UAP1 29 AMDHD2(7), CHIA(8), CHIT1(5), CMAS(6), CTBS(4), CYB5R1(5), CYB5R3(5), GFPT1(11), GFPT2(12), GNE(8), GNPDA1(3), GNPDA2(5), GNPNAT1(2), HEXA(3), HEXB(4), HK1(13), HK2(8), HK3(12), LHPP(2), MTMR1(16), MTMR2(4), MTMR6(8), NAGK(3), NANS(6), NPL(6), PGM3(6), PHPT1(2), RENBP(6), UAP1(8) 9847039 188 50 183 64 45 77 28 13 25 0 0.40 0.74 336 HSA04514_CELL_ADHESION_MOLECULES Genes involved in cell adhesion molecules (CAMs) ALCAM, CADM1, CADM3, CD2, CD22, CD226, CD274, CD276, CD28, CD34, CD4, CD40, CD40LG, CD58, CD6, CD80, CD86, CD8A, CD8B, CD99, CDH1, CDH15, CDH2, CDH3, CDH4, CDH5, CLDN1, CLDN10, CLDN11, CLDN14, CLDN15, CLDN16, CLDN17, CLDN18, CLDN19, CLDN2, CLDN20, CLDN22, CLDN23, CLDN3, CLDN4, CLDN5, CLDN6, CLDN7, CLDN8, CLDN9, CNTN1, CNTN2, CNTNAP1, CNTNAP2, CTLA4, ESAM, F11R, GLG1, HLA-A, HLA-A29.1, HLA-B, HLA-C, HLA-DMA, HLA-DMB, HLA-DOA, HLA-DOB, HLA-DPA1, HLA-DPB1, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRA, HLA-DRB1, HLA-DRB3, HLA-DRB4, HLA-DRB5, HLA-E, HLA-F, HLA-G, ICAM1, ICAM2, ICAM3, ICOS, ICOSLG, ITGA4, ITGA6, ITGA8, ITGA9, ITGAL, ITGAM, ITGAV, ITGB1, ITGB2, ITGB7, ITGB8, JAM2, JAM3, L1CAM, MADCAM1, MAG, MPZ, MPZL1, NCAM1, NCAM2, NEGR1, NEO1, NFASC, NLGN1, NLGN2, NLGN3, NRCAM, NRXN1, NRXN2, NRXN3, OCLN, PDCD1, PDCD1LG2, PECAM1, PTPRC, PTPRF, PTPRM, PVR, PVRL1, PVRL2, PVRL3, SDC1, SDC2, SDC3, SDC4, SELE, SELL, SELP, SELPLG, SIGLEC1, SPN, VCAM1, VCAN 121 ALCAM(13), CADM1(5), CADM3(6), CD2(4), CD22(13), CD226(5), CD274(3), CD276(2), CD28(6), CD34(4), CD4(8), CD40(4), CD40LG(7), CD58(1), CD6(8), CD80(7), CD86(6), CD8A(3), CD8B(1), CD99(2), CDH1(15), CDH2(14), CDH3(8), CDH5(9), CLDN1(2), CLDN10(9), CLDN11(1), CLDN15(4), CLDN16(6), CLDN17(2), CLDN18(4), CLDN19(2), CLDN2(4), CLDN20(4), CLDN22(3), CLDN6(1), CLDN7(1), CLDN8(5), CLDN9(2), CNTN1(17), CNTN2(7), CNTNAP1(13), CNTNAP2(33), CTLA4(2), ESAM(1), F11R(2), GLG1(4), HLA-A(5), HLA-B(3), HLA-DMA(4), HLA-DMB(2), HLA-DOA(3), HLA-DOB(4), HLA-DPA1(1), HLA-DPB1(2), HLA-DQA1(2), HLA-DQA2(1), HLA-DQB1(1), HLA-DRB1(1), HLA-DRB5(1), HLA-E(2), HLA-F(3), HLA-G(3), ICAM1(3), ICAM2(5), ICAM3(5), ICOS(2), ICOSLG(2), ITGA4(12), ITGA6(12), ITGA8(16), ITGA9(15), ITGAL(13), ITGAM(24), ITGAV(10), ITGB1(12), ITGB2(14), ITGB7(8), ITGB8(5), JAM2(9), JAM3(3), L1CAM(16), MAG(10), MPZ(3), MPZL1(2), NCAM1(13), NEGR1(3), NEO1(16), NLGN1(12), NLGN2(3), NLGN3(21), NRCAM(14), NRXN1(39), NRXN2(22), NRXN3(24), OCLN(5), PTPRC(15), PTPRF(34), PTPRM(19), PVR(2), PVRL1(9), PVRL2(5), PVRL3(9), SDC1(1), SDC2(2), SDC3(2), SDC4(8), SELE(10), SELL(4), SELP(15), SELPLG(11), SIGLEC1(10), SPN(4), VCAM1(9), VCAN(59) 47968973 922 103 897 296 256 381 124 44 106 11 0.41 0.74 337 LYMPHOCYTEPATHWAY B and T cell lymphocytes interact with other cells via transmembrane adhesion proteins such as CD44, which interacts with endothelial cells. CD44, ICAM1, ITGA4, ITGAL, ITGB1, ITGB2, PECAM1, SELE, SELL 9 CD44(12), ICAM1(3), ITGA4(12), ITGAL(13), ITGB1(12), ITGB2(14), SELE(10), SELL(4) 4673645 80 34 78 26 21 32 11 6 10 0 0.41 0.75 338 CARDIACEGFPATHWAY Cardiac hypertrophy, a response to high blood pressure, is stimulated by GPCR ligands such as angiotensin II that activate the EGF pathway. ADAM12, AGT, AGTR2, ARHA, EDN1, EDNRA, EDNRB, EGF, EGFR, FOS, HRAS, JUN, MYC, NFKB1, PLCG1, PRKCA, PRKCB1, RELA 16 ADAM12(12), AGT(7), AGTR2(8), EDN1(2), EDNRA(6), EDNRB(2), EGF(24), EGFR(20), FOS(6), JUN(1), MYC(7), NFKB1(12), PLCG1(12), PRKCA(10), RELA(6) 7244568 135 43 130 49 33 55 23 8 16 0 0.41 0.75 339 STAT3PATHWAY The STAT transcription factors are phosphorylated and activated by JAK kinases in response to cytokine signaling. FRAP1, JAK1, JAK2, JAK3, MAPK1, MAPK3, STAT3, TYK2 6 JAK2(21), JAK3(9), MAPK1(2), MAPK3(4), STAT3(12), TYK2(7) 3195669 55 28 54 21 9 24 8 3 5 6 0.41 0.75 340 HSA00602_GLYCOSPHINGOLIPID_BIOSYNTHESIS_NEO_LACTOSERIES Genes involved in glycosphingolipid biosynthesis - neo-lactoseries ABO, B3GNT1, B3GNT2, B3GNT3, B3GNT4, B3GNT5, B4GALT1, B4GALT2, B4GALT3, B4GALT4, FUT1, FUT2, FUT3, FUT4, FUT5, FUT6, FUT7, FUT9, GCNT2, ST3GAL6, ST8SIA1 18 B3GNT1(7), B3GNT2(4), B3GNT3(2), B3GNT4(5), B3GNT5(6), B4GALT1(2), B4GALT2(5), B4GALT3(8), B4GALT4(3), FUT1(5), FUT2(3), FUT3(9), FUT6(13), FUT9(12), GCNT2(17), ST3GAL6(8), ST8SIA1(4) 4921727 113 35 107 25 27 59 9 6 12 0 0.42 0.75 341 DNA_REPLICATION_REACTOME ASK, CDC45L, CDC6, CDC7, CDK2, CDT1, DIAPH2, GMNN, MCM10, MCM2, MCM3, MCM4, MCM5, MCM6, MCM7, NACA, NACA, FKSG17, ORC1L, ORC2L, ORC3L, ORC4L, ORC5L, ORC6L, PCNA, POLA, POLA2, POLD1, POLD2, POLD3, POLD4, POLE, POLE2, PRIM1, PRIM2A, RFC1, RFC2, RFC3, RFC4, RFC5, RPA1, RPA2, RPA3, RPA4, RPS27A, RPS27A, LOC388720, LOC389425, UBA52, UBB, UBC 41 CDC6(3), CDC7(13), CDK2(5), DIAPH2(22), GMNN(3), MCM10(8), MCM2(10), MCM3(9), MCM4(9), MCM5(12), MCM6(9), MCM7(5), NACA(20), PCNA(3), POLD1(15), POLD2(6), POLD3(6), POLD4(1), POLE(1), POLE2(4), PRIM1(2), RFC1(15), RFC2(4), RFC3(4), RFC4(4), RFC5(7), RPA1(6), RPA2(2), RPA3(4), RPA4(6), RPS27A(3), UBB(3), UBC(5) 17156137 229 61 222 57 82 90 21 9 27 0 0.42 0.75 342 AKAPCENTROSOMEPATHWAY Protein Kinase A at the Centrosome AKAP9, ARHA, CDC2, MAP2, PCNT1, PCNT2, PPP1CA, PPP2CA, PRKACB, PRKACG, PRKAG1, PRKAR2A, PRKAR2B, PRKCE, PRKCL1 10 AKAP9(57), MAP2(27), PPP1CA(6), PPP2CA(6), PRKACB(2), PRKACG(6), PRKAG1(2), PRKAR2A(4), PRKAR2B(5), PRKCE(11) 6468057 126 41 121 36 23 46 24 6 24 3 0.42 0.75 343 D4GDIPATHWAY D4-GDI inhibits the pro-apoptotic Rho GTPases and is cleaved by caspase-3. ADPRT, APAF1, ARHGAP5, ARHGDIB, CASP1, CASP10, CASP3, CASP8, CASP9, CYCS, GZMB, JUN, PRF1 11 APAF1(19), ARHGAP5(24), ARHGDIB(2), CASP1(7), CASP10(10), CASP3(4), CASP9(3), CYCS(3), GZMB(2), JUN(1), PRF1(8) 4148801 83 31 80 18 22 27 12 4 16 2 0.43 0.77 344 HSA04070_PHOSPHATIDYLINOSITOL_SIGNALING_SYSTEM Genes involved in phosphatidylinositol signaling system CALM1, CALM2, CALM3, CALML3, CALML6, CARKL, CDIPT, CDS1, CDS2, DGKA, DGKB, DGKD, DGKE, DGKG, DGKH, DGKI, DGKQ, DGKZ, FN3K, IMPA1, IMPA2, INPP1, INPP4A, INPP4B, INPP5A, INPP5B, INPP5D, INPP5E, INPPL1, ITGB1BP3, ITPK1, ITPKA, ITPKB, ITPR1, ITPR2, ITPR3, OCRL, PI4KA, PI4KB, PIB5PA, PIK3C2A, PIK3C2B, PIK3C2G, PIK3C3, PIK3CA, PIK3CB, PIK3CD, PIK3CG, PIK3R1, PIK3R2, PIK3R3, PIK3R5, PIP4K2A, PIP4K2B, PIP4K2C, PIP5K1A, PIP5K1B, PIP5K1C, PIP5K3, PLCB1, PLCB2, PLCB3, PLCB4, PLCD1, PLCD3, PLCD4, PLCE1, PLCG1, PLCG2, PLCZ1, PRKCA, PRKCB1, PRKCG, PTEN, PTPMT1, SKIP, SYNJ1, SYNJ2 65 CALM2(3), CALM3(1), CALML6(4), CDIPT(1), CDS1(3), CDS2(2), DGKA(15), DGKB(17), DGKD(21), DGKE(4), DGKG(13), DGKH(11), DGKI(21), DGKZ(9), IMPA1(4), IMPA2(6), INPP1(2), INPP4B(17), INPP5A(6), INPP5B(8), INPP5D(14), ITGB1BP3(1), ITPK1(2), ITPKB(6), ITPR1(31), ITPR2(38), ITPR3(23), OCRL(20), PI4KA(18), PI4KB(12), PIK3C2A(20), PIK3C2B(15), PIK3C2G(22), PIK3C3(11), PIK3CB(19), PIK3CD(10), PIK3CG(25), PIK3R2(4), PIK3R3(8), PIK3R5(8), PIP4K2A(4), PIP4K2B(9), PIP4K2C(4), PIP5K1A(7), PIP5K1B(6), PIP5K1C(5), PLCB1(6), PLCB2(9), PLCB3(9), PLCB4(20), PLCD1(5), PLCD3(7), PLCD4(13), PLCE1(36), PLCG1(12), PLCG2(27), PLCZ1(16), PRKCA(10), PRKCG(10), PTPMT1(1), SYNJ1(27), SYNJ2(13) 39076500 731 92 715 243 204 281 112 37 89 8 0.43 0.77 345 BLOOD_GROUP_GLYCOLIPID_BIOSYNTHESIS_NEOLACTOSERIES ABO, B3GNT1, FUT1, FUT2, FUT9, GCNT2, ST8SIA1 7 B3GNT1(7), FUT1(5), FUT2(3), FUT9(12), GCNT2(17), ST8SIA1(4) 2126144 48 25 45 10 12 24 5 3 4 0 0.43 0.77 346 PARKINPATHWAY In Parkinson's disease, dopaminergic neurons contain Lewy bodies consisting of alpha-synuclein and parkin, an E3 ubiquitin ligase that targets glycosylated alpha-synuclein. GPR37, PARK2, PNUTL1, SNCA, SNCAIP, UBE2E2, UBE2F, UBE2G1, UBE2G2, UBE2L3, UBE2L6, UBL1 10 GPR37(9), PARK2(6), SNCA(2), SNCAIP(12), UBE2E2(3), UBE2F(1), UBE2G1(2), UBE2L3(4), UBE2L6(1) 2165818 40 24 40 13 13 17 4 4 2 0 0.44 0.78 347 PLCDPATHWAY Phospholipase C (PLC-d1) hydrolyzes the membrane lipid PIP2 to DAG and IP3, which induce calcium influx and activates protein kinase C. ADRA1B, PLCD1, PRKCA, PRKCB1, TGM2 4 ADRA1B(7), PLCD1(5), PRKCA(10), TGM2(9) 1769078 31 22 31 20 10 11 5 3 2 0 0.44 0.78 348 METHIONINEPATHWAY Catabolic Pathways for Methionine, Isoleucine, Threonine and Valine BCKDHB, BCKDK, CBS, CTH, MUT 5 BCKDHB(3), BCKDK(6), CBS(13), CTH(5), MUT(7) 1579551 34 21 33 7 8 16 4 1 5 0 0.44 0.78 349 CELLCYCLEPATHWAY Cyclins interact with cyclin-dependent kinases to form active kinase complexes that regulate progression through the cell cycle. CCNA1, CCNB1, CCND1, CCND2, CCND3, CCNE1, CCNH, CDC2, CDC25A, CDK2, CDK4, CDK6, CDK7, CDKN1A, CDKN1B, CDKN2A, CDKN2B, CDKN2C, CDKN2D, E2F1, RB1, RBL1, TFDP1 18 CCNA1(4), CCNB1(8), CCND2(7), CCND3(5), CCNH(3), CDC25A(9), CDK2(5), CDK4(4), CDK6(3), CDK7(6), CDKN1A(1), CDKN1B(5), CDKN2A(1), CDKN2C(3), CDKN2D(3), RBL1(17) 4385889 84 33 80 17 16 36 12 6 14 0 0.44 0.78 350 HSA00650_BUTANOATE_METABOLISM Genes involved in butanoate metabolism AACS, AADAC, ABAT, ACADS, ACAT1, ACAT2, ACSM1, AKR1B10, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH5A1, ALDH7A1, ALDH9A1, BDH1, BDH2, DDHD1, ECHS1, EHHADH, GAD1, GAD2, HADH, HADHA, HMGCL, HMGCS1, HMGCS2, HSD17B10, HSD17B4, HSD3B7, ILVBL, L2HGDH, OXCT1, OXCT2, PDHA1, PDHA2, PDHB, PLA1A, PPME1, PRDX6, RDH11, RDH12, RDH13, RDH14 45 AACS(9), AADAC(5), ABAT(9), ACADS(5), ACAT1(6), ACAT2(5), ACSM1(12), AKR1B10(4), ALDH1B1(7), ALDH2(2), ALDH3A1(6), ALDH3A2(2), ALDH5A1(9), ALDH7A1(2), ALDH9A1(4), BDH1(6), BDH2(6), DDHD1(14), ECHS1(3), EHHADH(9), GAD1(8), GAD2(12), HADH(1), HADHA(7), HMGCL(3), HMGCS1(4), HMGCS2(8), HSD17B10(4), HSD17B4(10), HSD3B7(3), ILVBL(7), L2HGDH(3), OXCT1(10), OXCT2(2), PDHA1(4), PDHA2(10), PDHB(7), PLA1A(5), PPME1(1), PRDX6(2), RDH11(3), RDH12(6), RDH13(5), RDH14(3) 13856981 253 56 244 64 65 113 33 15 23 4 0.45 0.78 351 DEATHPATHWAY Death receptors such as Fas and DR3, 4, and 5 transduce pro-apoptotic signaling by oligomerizing to activate the caspase cascade. APAF1, BCL2, BID, BIRC2, BIRC3, BIRC4, CASP10, CASP3, CASP6, CASP7, CASP8, CASP9, CFLAR, CHUK, CYCS, DFFA, DFFB, FADD, GAS2, LMNA, MAP3K14, NFKB1, NFKBIA, RELA, RIPK1, SPTAN1, TNFRSF10A, TNFRSF10B, TNFRSF25, TNFSF10, TNFSF12, TRADD, TRAF2 30 APAF1(19), BID(3), BIRC2(13), BIRC3(3), CASP10(10), CASP3(4), CASP6(4), CASP7(4), CASP9(3), CFLAR(7), CHUK(11), CYCS(3), DFFA(1), DFFB(3), FADD(1), GAS2(7), LMNA(8), MAP3K14(12), NFKB1(12), NFKBIA(3), RELA(6), RIPK1(8), SPTAN1(29), TNFRSF10A(3), TNFRSF10B(5), TNFRSF25(1), TNFSF10(1), TNFSF12(4), TRAF2(5) 10869242 193 51 190 52 50 76 24 10 33 0 0.45 0.78 352 HSA00271_METHIONINE_METABOLISM Genes involved in methionine metabolism AHCY, AMD1, BHMT, CBS, CTH, DNMT1, DNMT3A, DNMT3B, KIAA0828, MARS, MARS2, MAT1A, MAT2B, MTAP, MTFMT, MTR, SRM, TAT 17 AHCY(4), AMD1(3), BHMT(2), CBS(13), CTH(5), DNMT1(15), DNMT3A(13), DNMT3B(15), MARS(12), MARS2(7), MAT1A(2), MAT2B(12), MTAP(4), MTFMT(1), MTR(13), SRM(1), TAT(9) 6919050 131 42 121 53 32 62 17 3 17 0 0.45 0.78 353 HSA00380_TRYPTOPHAN_METABOLISM Genes involved in tryptophan metabolism AADAT, AANAT, ABP1, ACAT1, ACAT2, ACMSD, AFMID, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH7A1, ALDH9A1, AOC2, AOC3, AOX1, ASMT, CARM1, CAT, CYP1A1, CYP1A2, CYP1B1, DDC, ECHS1, EHHADH, GCDH, HAAO, HADH, HADHA, HEMK1, HSD17B10, HSD17B4, INDO, INDOL1, INMT, KMO, KYNU, LCMT1, LCMT2, LNX1, MAOA, MAOB, METTL2B, METTL6, NFX1, OGDH, OGDHL, PRMT2, PRMT3, PRMT5, PRMT6, PRMT7, PRMT8, TDO2, TPH1, TPH2, WARS, WARS2, WBSCR22 58 AADAT(6), AANAT(4), ABP1(12), ACAT1(6), ACAT2(5), ACMSD(8), AFMID(6), ALDH1B1(7), ALDH2(2), ALDH3A1(6), ALDH3A2(2), ALDH7A1(2), ALDH9A1(4), AOC2(6), AOC3(14), AOX1(19), ASMT(3), CARM1(6), CAT(5), CYP1A1(9), CYP1A2(6), CYP1B1(3), DDC(11), ECHS1(3), EHHADH(9), GCDH(5), HAAO(4), HADH(1), HADHA(7), HEMK1(2), HSD17B10(4), HSD17B4(10), INMT(4), KMO(11), KYNU(5), LCMT1(4), LCMT2(13), LNX1(9), MAOA(14), MAOB(7), METTL2B(3), METTL6(2), NFX1(14), OGDH(11), OGDHL(18), PRMT3(10), PRMT5(11), PRMT6(6), PRMT7(4), PRMT8(9), TDO2(3), TPH1(14), TPH2(9), WARS(6), WARS2(5), WBSCR22(9) 20922060 398 70 387 99 95 166 60 25 43 9 0.45 0.79 354 PHOTOSYNTHESIS ATP5E, ATP5O, ATP6AP1, ATP6V0A1, ATP6V0A4, ATP6V0B, ATP6V0C, ATP6V0C, SHMT1, ATP6V0D1, ATP6V0E, ATP6V1A, ATP6V1B1, ATP6V1B2, ATP6V1C1, ATP6V1C2, ATP6V1D, ATP6V1E1, ATP6V1F, ATP6V1G1, ATP6V1G2, ATP6V1G3, ATP6V1H, FDXR 21 ATP5E(1), ATP5O(1), ATP6AP1(7), ATP6V0A1(5), ATP6V0A4(14), ATP6V0B(2), ATP6V0C(2), ATP6V0D1(3), ATP6V1A(7), ATP6V1B2(7), ATP6V1C1(3), ATP6V1C2(9), ATP6V1D(4), ATP6V1E1(3), ATP6V1F(2), ATP6V1G1(1), ATP6V1G2(4), ATP6V1G3(2), ATP6V1H(5), FDXR(6), SHMT1(6) 5242465 94 36 94 30 22 41 12 3 16 0 0.46 0.80 355 NUCLEOTIDE_METABOLISM ADSL, ADSS, DHFR, HPRT1, IMPDH1, MTHFD2, NME2, OAZ1, POLA, POLB, POLD1, POLG, PRPS2, RRM1, SAT, SRM 13 ADSL(7), ADSS(8), DHFR(3), HPRT1(2), IMPDH1(5), MTHFD2(3), POLB(4), POLD1(15), POLG(7), PRPS2(10), RRM1(4), SRM(1) 4120599 69 33 68 22 16 31 11 5 6 0 0.47 0.81 356 GLYCOLYSIS_AND_GLUCONEOGENESIS Genes involved in glycolysis and gluconeogenesis ALDOA, ALDOB, ALDOC, DLAT, DLD, ENO1, ENO2, ENO3, FBP1, FBP2, G6PC, GAPDH, GAPDHS, GAPDS, GCK, GOT1, GOT2, GPI, HK1, HK2, HK3, LDHA, LDHAL6B, LDHB, LDHC, MDH1, MDH2, PC, PCK1, PDHA1, PDHA2, PDHB, PDHX, PFKL, PFKM, PFKP, PGAM1, PGAM2, PGK1, PGK2, PKLR, PKM2, TNFAIP1, TPI1 42 ALDOA(6), ALDOB(9), ALDOC(4), DLAT(2), DLD(7), ENO1(5), ENO2(3), ENO3(4), FBP1(4), G6PC(6), GAPDH(2), GAPDHS(10), GCK(5), GOT1(6), GOT2(5), GPI(9), HK1(13), HK2(8), HK3(12), LDHA(6), LDHAL6B(2), LDHB(2), LDHC(3), MDH1(2), MDH2(5), PC(8), PCK1(15), PDHA1(4), PDHA2(10), PDHB(7), PDHX(8), PFKM(7), PFKP(11), PGAM1(2), PGAM2(2), PGK1(6), PGK2(5), PKLR(10), PKM2(5), TNFAIP1(3), TPI1(1) 13872277 244 57 239 81 69 102 30 16 25 2 0.47 0.81 357 ATP_SYNTHESIS ATP5E, ATP5O, ATP6AP1, ATP6V0A1, ATP6V0A4, ATP6V0B, ATP6V0C, ATP6V0C, SHMT1, ATP6V0D1, ATP6V0E, ATP6V1A, ATP6V1B1, ATP6V1B2, ATP6V1C1, ATP6V1C2, ATP6V1D, ATP6V1E1, ATP6V1F, ATP6V1G1, ATP6V1G2, ATP6V1G3, ATP6V1H 20 ATP5E(1), ATP5O(1), ATP6AP1(7), ATP6V0A1(5), ATP6V0A4(14), ATP6V0B(2), ATP6V0C(2), ATP6V0D1(3), ATP6V1A(7), ATP6V1B2(7), ATP6V1C1(3), ATP6V1C2(9), ATP6V1D(4), ATP6V1E1(3), ATP6V1F(2), ATP6V1G1(1), ATP6V1G2(4), ATP6V1G3(2), ATP6V1H(5), SHMT1(6) 4956143 88 35 88 30 22 38 10 3 15 0 0.48 0.81 358 FLAGELLAR_ASSEMBLY ATP5E, ATP5O, ATP6AP1, ATP6V0A1, ATP6V0A4, ATP6V0B, ATP6V0C, ATP6V0C, SHMT1, ATP6V0D1, ATP6V0E, ATP6V1A, ATP6V1B1, ATP6V1B2, ATP6V1C1, ATP6V1C2, ATP6V1D, ATP6V1E1, ATP6V1F, ATP6V1G1, ATP6V1G2, ATP6V1G3, ATP6V1H 20 ATP5E(1), ATP5O(1), ATP6AP1(7), ATP6V0A1(5), ATP6V0A4(14), ATP6V0B(2), ATP6V0C(2), ATP6V0D1(3), ATP6V1A(7), ATP6V1B2(7), ATP6V1C1(3), ATP6V1C2(9), ATP6V1D(4), ATP6V1E1(3), ATP6V1F(2), ATP6V1G1(1), ATP6V1G2(4), ATP6V1G3(2), ATP6V1H(5), SHMT1(6) 4956143 88 35 88 30 22 38 10 3 15 0 0.48 0.81 359 TYPE_III_SECRETION_SYSTEM ATP5E, ATP5O, ATP6AP1, ATP6V0A1, ATP6V0A4, ATP6V0B, ATP6V0C, ATP6V0C, SHMT1, ATP6V0D1, ATP6V0E, ATP6V1A, ATP6V1B1, ATP6V1B2, ATP6V1C1, ATP6V1C2, ATP6V1D, ATP6V1E1, ATP6V1F, ATP6V1G1, ATP6V1G2, ATP6V1G3, ATP6V1H 20 ATP5E(1), ATP5O(1), ATP6AP1(7), ATP6V0A1(5), ATP6V0A4(14), ATP6V0B(2), ATP6V0C(2), ATP6V0D1(3), ATP6V1A(7), ATP6V1B2(7), ATP6V1C1(3), ATP6V1C2(9), ATP6V1D(4), ATP6V1E1(3), ATP6V1F(2), ATP6V1G1(1), ATP6V1G2(4), ATP6V1G3(2), ATP6V1H(5), SHMT1(6) 4956143 88 35 88 30 22 38 10 3 15 0 0.48 0.81 360 BLYMPHOCYTEPATHWAY B cells express the major histocompatibility complex (class II MHC), immunoglobulins, adhesion proteins, and other factors on their cell surface. CD80, CR1, CR2, FCGR2B, HLA-DRA, HLA-DRB1, ICAM1, ITGAL, ITGB2, PTPRC, TNFRSF5 9 CD80(7), CR1(28), FCGR2B(4), HLA-DRB1(1), ICAM1(3), ITGAL(13), ITGB2(14), PTPRC(15) 4526899 85 33 83 34 24 37 11 4 7 2 0.48 0.81 361 CYTOKINEPATHWAY Intercellular signaling in the immune system occurs via secretion of cytokines, which promote antigen-dependent B and T cell response. IFNA1, IFNB1, IFNG, IL10, IL12A, IL12B, IL13, IL14, IL15, IL16, IL17, IL18, IL1A, IL2, IL3, IL4, IL5, IL6, IL8, IL9, LTA, TNF 20 IFNB1(4), IFNG(5), IL10(4), IL12A(7), IL12B(3), IL15(1), IL16(17), IL18(1), IL1A(1), IL2(4), IL5(2), IL6(2), IL8(3), LTA(3), TNF(1) 3594321 58 28 56 22 16 25 7 2 8 0 0.48 0.81 362 HSA00601_GLYCOSPHINGOLIPID_BIOSYNTHESIS_LACTOSERIES Genes involved in glycosphingolipid biosynthesis - lactoseries ABO, B3GALT1, B3GALT2, B3GALT5, B3GNT5, FUT1, FUT2, FUT3, ST3GAL3, ST3GAL4 10 B3GALT1(10), B3GALT2(8), B3GALT5(6), B3GNT5(6), FUT1(5), FUT2(3), FUT3(9), ST3GAL3(6), ST3GAL4(4) 2575225 57 26 54 16 12 28 7 3 7 0 0.48 0.81 363 METHIONINE_METABOLISM AHCY, BHMT, CBS, CTH, DNMT1, DNMT2, DNMT3A, DNMT3B, MARS, MARS2, MAT1A, MAT2B, MTR 12 AHCY(4), BHMT(2), CBS(13), CTH(5), DNMT1(15), DNMT3A(13), DNMT3B(15), MARS(12), MARS2(7), MAT1A(2), MAT2B(12), MTR(13) 5873186 113 38 104 44 26 55 14 2 16 0 0.48 0.82 364 CD40PATHWAY The CD40 receptor is a TNF-type receptor that regulates immunoglobulin expression in B cells and moderates T cell activation via T-cell expression of its ligand. CHUK, DUSP1, IKBKAP, IKBKB, IKBKG, MAP3K1, MAP3K14, NFKB1, NFKBIA, RELA, TNFAIP3, TNFRSF5, TNFSF5, TRAF3, TRAF6 11 CHUK(11), DUSP1(2), IKBKAP(14), IKBKB(15), MAP3K14(12), NFKB1(12), NFKBIA(3), RELA(6), TNFAIP3(2), TRAF3(6), TRAF6(4) 5344518 87 34 86 24 14 39 14 6 14 0 0.48 0.82 365 UREACYCLEPATHWAY Ammonia released from amino acid deamination is used to produce carbamoyl phosphate, which is used to convert ornithine to citrulline, from which urea is eventually formed. ARG1, ASL, ASS, CPS1, GLS, GLUD1, GOT1 6 ARG1(5), ASL(4), CPS1(24), GLS(10), GLUD1(4), GOT1(6) 2621352 53 24 51 13 12 20 7 2 8 4 0.49 0.82 366 HSA00531_GLYCOSAMINOGLYCAN_DEGRADATION Genes involved in glycosaminoglycan degradation ARSB, GALNS, GLB1, GNS, GUSB, HEXA, HEXB, HGSNAT, HPSE, HPSE2, HYAL1, HYAL2, IDS, IDUA, LCT, NAGLU, SPAM1 16 ARSB(6), GLB1(9), GNS(2), GUSB(5), HEXA(3), HEXB(4), HGSNAT(9), HPSE(4), HPSE2(5), HYAL1(4), HYAL2(1), IDS(6), LCT(30), NAGLU(3), SPAM1(12) 6792858 103 41 101 51 28 45 12 8 10 0 0.49 0.82 367 TERTPATHWAY hTERC, the RNA subunit of telomerase, and hTERT, the catalytic protein subunit, are required for telomerase activity and are overexpressed in many cancers. HDAC1, MAX, MYC, SP1, SP3, TP53, WT1, ZNF42 6 HDAC1(4), MAX(8), MYC(7), SP1(6), SP3(12), WT1(3) 2119691 40 23 38 10 7 20 7 1 3 2 0.49 0.82 368 HSA00240_PYRIMIDINE_METABOLISM Genes involved in pyrimidine metabolism AICDA, AK3, CAD, CANT1, CDA, CMPK, CTPS, CTPS2, DCK, DCTD, DHODH, DPYD, DPYS, DTYMK, DUT, ECGF1, ENTPD1, ENTPD3, ENTPD4, ENTPD5, ENTPD6, ENTPD8, ITPA, NME1, NME2, NME4, NME6, NME7, NP, NT5C, NT5C1A, NT5C1B, NT5C2, NT5C3, NT5E, NT5M, NUDT2, PNPT1, POLA1, POLA2, POLD1, POLD2, POLD3, POLD4, POLE, POLE2, POLE3, POLE4, POLR1A, POLR1B, POLR1C, POLR1D, POLR2A, POLR2B, POLR2C, POLR2D, POLR2E, POLR2F, POLR2G, POLR2H, POLR2I, POLR2J, POLR2K, POLR2L, POLR3A, POLR3B, POLR3G, POLR3GL, POLR3H, POLR3K, PRIM1, PRIM2, RFC5, RRM1, RRM2, RRM2B, TK1, TK2, TXNRD1, TXNRD2, TYMS, UCK1, UCK2, UMPS, UPB1, UPP1, UPP2, UPRT, ZNRD1 83 AICDA(3), CAD(38), CANT1(5), CDA(1), CTPS(10), CTPS2(10), DCK(4), DCTD(5), DHODH(3), DPYD(16), DPYS(3), DUT(1), ENTPD1(6), ENTPD3(8), ENTPD4(4), ENTPD5(2), ENTPD6(15), ITPA(1), NME6(2), NME7(4), NT5C(1), NT5C1A(2), NT5C1B(10), NT5C2(7), NT5C3(8), NT5E(6), NT5M(4), NUDT2(3), PNPT1(9), POLA1(26), POLD1(15), POLD2(6), POLD3(6), POLD4(1), POLE(1), POLE2(4), POLE3(2), POLR1A(15), POLR1B(16), POLR1C(4), POLR1D(2), POLR2A(25), POLR2B(20), POLR2C(5), POLR2D(3), POLR2E(1), POLR2F(2), POLR2H(3), POLR2K(2), POLR3A(9), POLR3B(7), POLR3G(2), POLR3GL(2), POLR3H(3), PRIM1(2), PRIM2(7), RFC5(7), RRM1(4), RRM2(5), RRM2B(5), TK1(2), TK2(7), TXNRD1(10), TXNRD2(4), TYMS(1), UCK1(5), UCK2(6), UMPS(7), UPB1(9), UPP1(4), UPP2(7), UPRT(6), ZNRD1(1) 27818405 472 81 461 144 110 192 71 32 65 2 0.49 0.82 369 RABPATHWAY Rab family GTPases regulate vesicle transport, endocytosis and exocytosis, and vesicle docking via interactions with the rabphilins. ACTA1, MEL, RAB11A, RAB1A, RAB2, RAB27A, RAB3A, RAB4A, RAB5A, RAB6A, RAB7, RAB9A 9 ACTA1(4), RAB11A(1), RAB1A(3), RAB27A(3), RAB3A(5), RAB4A(5), RAB5A(2), RAB6A(2), RAB9A(7) 1537248 32 18 28 8 9 14 3 0 6 0 0.49 0.82 370 EGFR_SMRTEPATHWAY EGF receptor activation inhibits SMRT, a transcriptional co-repressor that interacts with transcription factor complexes and gene silencers. EGF, EGFR, MAP2K1, MAP3K1, MAPK14, NCOR2, RARA, RXRA, THRA, THRB, ZNF145 9 EGF(24), EGFR(20), MAP2K1(2), MAPK14(6), NCOR2(24), RARA(3), RXRA(1), THRA(5), THRB(4) 4308931 89 33 87 33 23 36 14 6 10 0 0.50 0.82 371 HSA00640_PROPANOATE_METABOLISM Genes involved in propanoate metabolism ABAT, ACACA, ACACB, ACADM, ACAT1, ACAT2, ACSS1, ACSS2, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH6A1, ALDH7A1, ALDH9A1, ECHS1, EHHADH, HADHA, HIBCH, LDHA, LDHAL6A, LDHAL6B, LDHB, LDHC, LOC283398, MCEE, MLYCD, MUT, PCCA, PCCB, SUCLA2, SUCLG1, SUCLG2 32 ABAT(9), ACACA(27), ACACB(31), ACADM(6), ACAT1(6), ACAT2(5), ACSS1(4), ACSS2(11), ALDH1B1(7), ALDH2(2), ALDH3A1(6), ALDH3A2(2), ALDH6A1(5), ALDH7A1(2), ALDH9A1(4), ECHS1(3), EHHADH(9), HADHA(7), HIBCH(7), LDHA(6), LDHAL6A(8), LDHAL6B(2), LDHB(2), LDHC(3), MLYCD(5), MUT(7), PCCA(10), PCCB(8), SUCLA2(5), SUCLG1(1) 13481512 210 53 204 53 58 82 31 13 22 4 0.50 0.82 372 ST_WNT_CA2_CYCLIC_GMP_PATHWAY Some Wnt glycoprotein/Frizzled receptor interactions increase intracellular calcium and decrease cGMP. BF, CAMK2A, CAMK2B, CAMK2D, CAMK2G, DAG1, ITPKA, ITPKB, ITPR1, ITPR2, ITPR3, NFAT5, PDE6A, PDE6B, PDE6C, PDE6D, PDE6G, PDE6H, SLC6A13, TF 18 CAMK2A(8), CAMK2B(2), CAMK2D(7), CAMK2G(8), DAG1(7), ITPKB(6), ITPR1(31), ITPR2(38), ITPR3(23), NFAT5(13), PDE6A(13), PDE6B(6), PDE6C(14), PDE6D(1), SLC6A13(10), TF(15) 12139049 202 51 199 68 60 85 23 6 26 2 0.50 0.83 373 ST_TYPE_I_INTERFERON_PATHWAY Type I interferon is an antiviral cytokine that induces a JAK-STAT type pathway leading to ISGF3 activation and a cellular antiviral response. IFNAR1, IFNB1, ISGF3G, JAK1, PTPRU, REG1A, STAT1, STAT2, TYK2 7 IFNAR1(9), IFNB1(4), PTPRU(20), REG1A(4), STAT1(14), STAT2(12), TYK2(7) 3473387 70 32 68 21 17 33 11 3 6 0 0.50 0.83 374 CTLA4PATHWAY T cell activation requires interaction with an antigen-MHC-I complex on an antigen-presenting cell (APC), as well as CD28 interaction with the APC's CD80 or 86. CD28, CD3D, CD3E, CD3G, CD3Z, CD80, CD86, CTLA4, GRB2, HLA-DRA, HLA-DRB1, ICOS, ICOSL, IL2, ITK, LCK, PIK3CA, PIK3R1, PTPN11, TRA@, TRB@ 15 CD28(6), CD3D(3), CD3E(2), CD3G(2), CD80(7), CD86(6), CTLA4(2), GRB2(3), HLA-DRB1(1), ICOS(2), IL2(4), ITK(10), LCK(5), PTPN11(8) 3205468 61 27 61 13 12 31 9 2 7 0 0.50 0.83 375 HSA00363_BISPHENOL_A_DEGRADATION Genes involved in bisphenol A degradation AKR1B10, DHRS1, DHRS2, DHRS3, DHRS7, DHRSX, HSD3B7, PON1, PON2, PON3, RDH11, RDH12, RDH13, RDH14 14 AKR1B10(4), DHRS1(4), DHRS2(3), DHRS3(2), DHRS7(9), DHRSX(4), HSD3B7(3), PON1(12), PON2(8), PON3(1), RDH11(3), RDH12(6), RDH13(5), RDH14(3) 3072823 67 30 65 17 21 25 11 3 7 0 0.50 0.83 376 TCRMOLECULE T Cell Receptor and CD3 Complex CD3D, CD3E, CD3G, CD3Z, TRA@, TRB@ 3 CD3D(3), CD3E(2), CD3G(2) 407734 7 6 7 1 0 4 1 0 2 0 0.51 0.83 377 SELENOAMINO_ACID_METABOLISM AHCY, CBS, CTH, GGT1, MARS, MARS2, MAT1A, MAT2B, PAPSS1, PAPSS2, SCLY, SEPHS1 12 AHCY(4), CBS(13), CTH(5), GGT1(10), MARS(12), MARS2(7), MAT1A(2), MAT2B(12), PAPSS1(6), PAPSS2(6), SCLY(4), SEPHS1(13) 4130398 94 33 88 29 31 39 14 2 8 0 0.51 0.83 378 BLOOD_GROUP_GLYCOLIPID_BIOSYNTHESIS_LACTOSERIES ABO, FUT1, FUT2, FUT3, FUT5, FUT6, SIAT6, ST3GAL3 6 FUT1(5), FUT2(3), FUT3(9), FUT6(13), ST3GAL3(6) 1534380 36 20 36 14 4 26 4 1 1 0 0.51 0.83 379 HSA00710_CARBON_FIXATION Genes involved in carbon fixation ALDOA, ALDOB, ALDOC, FBP1, FBP2, GOT1, GOT2, GPT, GPT2, MDH1, MDH2, ME1, ME3, PGK1, PGK2, PKLR, PKM2, RPE, RPIA, TKT, TKTL1, TKTL2, TPI1 22 ALDOA(6), ALDOB(9), ALDOC(4), FBP1(4), GOT1(6), GOT2(5), GPT2(7), MDH1(2), MDH2(5), ME1(10), ME3(7), PGK1(6), PGK2(5), PKLR(10), PKM2(5), RPE(3), RPIA(7), TKT(7), TKTL1(10), TKTL2(12), TPI1(1) 6529241 131 41 128 43 35 57 14 7 16 2 0.51 0.83 380 MONOCYTEPATHWAY Monocytes are a class of immune phagocytes that can develop into macrophages and express LFA-1, CD44, and other surface signaling proteins. CD44, ICAM1, ITGA4, ITGAL, ITGAM, ITGB1, ITGB2, PECAM1, SELE, SELL, SELP 11 CD44(12), ICAM1(3), ITGA4(12), ITGAL(13), ITGAM(24), ITGB1(12), ITGB2(14), SELE(10), SELL(4), SELP(15) 6087091 119 40 114 29 30 50 14 6 17 2 0.52 0.84 381 ONE_CARBON_POOL_BY_FOLATE ALDH1L1, AMT, ATIC, ATP6V0C, SHMT1, DHFR, GART, MTHFD1, MTHFD1L, MTHFD2, MTHFR, MTHFS, MTR, SHMT1, SHMT2, TYMS 15 ALDH1L1(9), AMT(5), ATIC(9), ATP6V0C(2), DHFR(3), GART(8), MTHFD1(6), MTHFD1L(12), MTHFD2(3), MTHFR(7), MTR(13), SHMT1(6), SHMT2(8), TYMS(1) 6300757 92 37 88 32 23 42 9 3 13 2 0.52 0.84 382 TERPENOID_BIOSYNTHESIS FDFT1, FDPS, FDPS, LOC402397, IDI1, SQLE 4 FDFT1(3), FDPS(7), IDI1(4), SQLE(6) 1130709 20 14 20 6 5 5 5 3 2 0 0.52 0.84 383 CFTRPATHWAY The cAMP-regulated chloride channel CFTR (deficient in cystic fibrosis) is regulated by the surface-localized beta-adrenergic receptor. ADCY1, ADRB2, CFTR, GNAS, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, SLC9A3R1, VIL2 10 ADCY1(17), ADRB2(8), CFTR(13), GNAS(25), PRKACB(2), PRKACG(6), PRKAR1A(4), PRKAR2A(4), PRKAR2B(5), SLC9A3R1(3) 4062044 87 33 82 22 20 40 9 5 13 0 0.52 0.84 384 HSA00310_LYSINE_DEGRADATION Genes involved in lysine degradation AADAT, AASDHPPT, AASS, ACAT1, ACAT2, AKR1B10, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH7A1, ALDH9A1, BBOX1, DLST, DOT1L, ECHS1, EHHADH, EHMT1, EHMT2, GCDH, HADH, HADHA, HSD17B10, HSD17B4, HSD3B7, NSD1, OGDH, OGDHL, PIPOX, PLOD1, PLOD2, PLOD3, RDH11, RDH12, RDH13, RDH14, SETD1A, SETD7, SETDB1, SHMT1, SHMT2, SPCS1, SPCS3, SUV39H1, SUV39H2, TMLHE 47 AADAT(6), AASDHPPT(4), AASS(6), ACAT1(6), ACAT2(5), AKR1B10(4), ALDH1B1(7), ALDH2(2), ALDH3A1(6), ALDH3A2(2), ALDH7A1(2), ALDH9A1(4), BBOX1(4), DLST(10), DOT1L(8), ECHS1(3), EHHADH(9), EHMT2(6), GCDH(5), HADH(1), HADHA(7), HSD17B10(4), HSD17B4(10), HSD3B7(3), NSD1(36), OGDH(11), OGDHL(18), PIPOX(6), PLOD1(4), PLOD2(16), PLOD3(11), RDH11(3), RDH12(6), RDH13(5), RDH14(3), SETD1A(12), SETD7(6), SETDB1(19), SHMT1(6), SHMT2(8), SPCS1(1), SPCS3(3), SUV39H1(10), SUV39H2(6), TMLHE(5) 19491406 319 68 305 82 78 134 49 19 35 4 0.52 0.84 385 GLYCOSPHINGOLIPID_METABOLISM ARSA, ARSB, ARSD, ARSE, ASAH1, GAL3ST1, GALC, GBA, GBAP, GLA, GLB1, LCT, NEU1, NEU2, NEU3, NEU4, PPAP2A, PPAP2B, PPAP2C, SMPD1, SMPD2, SPTLC1, SPTLC2, UGCG 20 ARSB(6), ARSD(9), ARSE(7), ASAH1(9), GAL3ST1(13), GALC(7), GBA(4), GLA(3), GLB1(9), LCT(30), NEU2(5), NEU3(3), PPAP2A(4), PPAP2B(3), SMPD1(12), SMPD2(5), SPTLC1(6), SPTLC2(6), UGCG(5) 7860710 146 43 145 44 43 68 12 9 14 0 0.52 0.84 386 TCRAPATHWAY The kinases Lck and Fyn phosphorylate and activate the T cell receptor, which recognizes antigen-bound MHCII and leads to T cell activation. CD3D, CD3E, CD3G, CD3Z, CD4, FYN, HLA-DRA, HLA-DRB1, LCK, PTPRC, TRA@, TRB@, ZAP70 10 CD3D(3), CD3E(2), CD3G(2), CD4(8), FYN(7), HLA-DRB1(1), LCK(5), PTPRC(15), ZAP70(10) 3184675 53 27 53 15 11 25 5 2 10 0 0.53 0.84 387 SPPAPATHWAY Thrombin cleaves protease-activated receptors PAR1 and PAR4 to induce calcium influx and activate platelet aggregation, a process inhibited by aspirin. F2, F2R, F2RL3, GNAI1, GNB1, GNGT1, HRAS, ITGA1, ITGB1, MAP2K1, MAPK1, MAPK3, PLA2G4A, PLCB1, PRKCA, PRKCB1, PTGS1, PTK2, RAF1, SRC, SYK, TBXAS1 20 F2(9), F2R(8), GNAI1(4), GNB1(3), ITGA1(20), ITGB1(12), MAP2K1(2), MAPK1(2), MAPK3(4), PLA2G4A(11), PLCB1(6), PRKCA(10), PTGS1(8), PTK2(11), RAF1(7), SRC(2), SYK(6), TBXAS1(6) 8327716 131 44 129 43 34 51 20 7 19 0 0.53 0.84 388 LEPTINPATHWAY Leptin is a peptide secreted by adipose tissue that, in skeletal muscle, promotes fatty acid oxidation, decreases cells' lipid content, and promotes insulin sensitivity. ACACA, CPT1A, LEP, LEPR, PRKAA1, PRKAA2, PRKAB1, PRKAB2, PRKAG1, PRKAG2 10 ACACA(27), CPT1A(10), LEP(2), LEPR(15), PRKAA1(6), PRKAA2(9), PRKAB1(7), PRKAB2(2), PRKAG1(2), PRKAG2(4) 5100499 84 34 82 25 22 33 9 5 15 0 0.53 0.84 389 GATA3PATHWAY GATA-3 is a transcription factor that promotes differentiation of helper T cells into Th2 cells, which secrete cytokines IL4, IL5, and IL13. GATA3, IL13, IL4, IL5, JUNB, MAF, MAP2K3, MAPK14, NFATC1, NFATC2, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B 14 GATA3(4), IL5(2), MAF(2), MAP2K3(8), MAPK14(6), NFATC2(15), PRKACB(2), PRKACG(6), PRKAR1A(4), PRKAR2A(4), PRKAR2B(5) 3405750 58 29 56 22 10 28 4 6 10 0 0.53 0.85 390 ST_DICTYOSTELIUM_DISCOIDEUM_CAMP_CHEMOTAXIS_PATHWAY The fungus Dictyostelium discoideum is a model system for cytoskeletal organization during chemotaxis. ACTR2, ACTR3, AKT1, ANGPTL2, BF, DAG1, DGKA, ETFA, GCA, ITGA9, ITPKA, ITPKB, ITPR1, ITPR2, ITPR3, MAP2K1, MAPK1, MAPK3, NR1I3, PAK1, PDE3A, PDE3B, PI3, PIK3C2G, PIK3CA, PIK3CD, PIK3R1, PLDN, PSME1, RIPK3, RPS4X, SGCB, VASP 29 ACTR2(7), ACTR3(3), AKT1(8), ANGPTL2(9), DAG1(7), DGKA(15), ETFA(4), GCA(3), ITGA9(15), ITPKB(6), ITPR1(31), ITPR2(38), ITPR3(23), MAP2K1(2), MAPK1(2), MAPK3(4), NR1I3(7), PAK1(3), PDE3A(17), PDE3B(15), PI3(3), PIK3C2G(22), PIK3CD(10), PLDN(4), PSME1(2), RIPK3(2), RPS4X(4), SGCB(4), VASP(2) 15830165 272 61 266 89 72 111 40 8 35 6 0.54 0.85 391 TRYPTOPHAN_METABOLISM AANAT, ABP1, ACAT1, ACAT2, ACMSD, ALDH1A1, ALDH1A2, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH9A1, AOC2, AOC3, AOX1, ASMT, CAT, CYP19A1, CYP1A1, CYP1A2, CYP2A6, CYP2A6, CYP2A7, CYP2A7P1, CYP2A13, CYP2B6, CYP2C18, CYP2C19, CYP2C19, CYP2C9, CYP2C8, CYP2C9, CYP2D6, CYP2E1, CYP2F1, CYP2J2, CYP3A4, CYP3A5, CYP3A7, CYP4B1, CYP4F8, CYP51A1, DDC, ECHS1, EHHADH, GCDH, HAAO, HADHA, INDO, KMO, KYNU, MAOA, MAOB, SDS, TDO2, TPH1, WARS, WARS2 54 AANAT(4), ABP1(12), ACAT1(6), ACAT2(5), ACMSD(8), ALDH1A1(6), ALDH1A2(9), ALDH1B1(7), ALDH2(2), ALDH3A1(6), ALDH3A2(2), ALDH9A1(4), AOC2(6), AOC3(14), AOX1(19), ASMT(3), CAT(5), CYP19A1(12), CYP1A1(9), CYP1A2(6), CYP2A13(7), CYP2A6(11), CYP2A7(5), CYP2B6(11), CYP2C18(5), CYP2C19(7), CYP2C8(4), CYP2C9(5), CYP2D6(2), CYP2E1(5), CYP2F1(5), CYP2J2(5), CYP3A4(14), CYP3A5(7), CYP3A7(9), CYP4B1(4), CYP4F8(9), CYP51A1(4), DDC(11), ECHS1(3), EHHADH(9), GCDH(5), HAAO(4), HADHA(7), KMO(11), KYNU(5), MAOA(14), MAOB(7), SDS(3), TDO2(3), TPH1(14), WARS(6), WARS2(5) 19356132 371 67 364 108 101 139 59 22 43 7 0.54 0.85 392 HSA00410_BETA_ALANINE_METABOLISM Genes involved in beta-alanine metabolism ABAT, ABP1, ACADM, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH7A1, ALDH9A1, AOC2, AOC3, CNDP1, DPYD, DPYS, ECHS1, EHHADH, GAD1, GAD2, HADHA, HIBCH, MLYCD, SMS, SRM, UPB1 25 ABAT(9), ABP1(12), ACADM(6), ALDH1B1(7), ALDH2(2), ALDH3A1(6), ALDH3A2(2), ALDH7A1(2), ALDH9A1(4), AOC2(6), AOC3(14), CNDP1(6), DPYD(16), DPYS(3), ECHS1(3), EHHADH(9), GAD1(8), GAD2(12), HADHA(7), HIBCH(7), MLYCD(5), SMS(8), SRM(1), UPB1(9) 9239023 164 47 159 46 48 58 26 12 20 0 0.54 0.85 393 HSA00563_GLYCOSYLPHOSPHATIDYLINOSITOL_ANCHOR_BIOSYNTHESIS Genes involved in glycosylphosphatidylinositol(GPI)-anchor biosynthesis GPAA1, GPLD1, PGAP1, PIGA, PIGB, PIGC, PIGF, PIGG, PIGH, PIGK, PIGL, PIGM, PIGN, PIGO, PIGP, PIGQ, PIGS, PIGT, PIGU, PIGV, PIGW, PIGX, PIGZ 22 GPAA1(4), GPLD1(10), PGAP1(11), PIGA(8), PIGB(10), PIGC(4), PIGF(4), PIGG(12), PIGH(3), PIGK(6), PIGL(1), PIGN(9), PIGO(15), PIGP(2), PIGS(3), PIGT(10), PIGU(3), PIGV(6), PIGW(8), PIGX(2), PIGZ(6) 8032790 137 45 135 24 37 56 20 8 16 0 0.54 0.85 394 ACE2PATHWAY Angiotensin-converting enzyme 2 (ACE2) digests the blood-pressure regulator angiotensin II (AGT) ultimately to the vasodilator AGT1-7. ACE2, AGT, AGTR1, AGTR2, CMA1, COL4A1, COL4A2, COL4A3, COL4A4, COL4A5, COL4A6, REN 12 ACE2(19), AGT(7), AGTR2(8), CMA1(1), COL4A1(23), COL4A2(11), COL4A3(24), COL4A4(24), COL4A5(27), COL4A6(35), REN(3) 9026552 182 47 174 50 47 78 16 10 23 8 0.54 0.85 395 CITRATE_CYCLE_TCA_CYCLE ACO1, ACO2, CS, DLD, DLST, DLSTP, FH, IDH1, IDH2, IDH3A, IDH3B, IDH3G, MDH1, MDH2, PC, PCK1, SDHA, SDHA, SDHAL2, SDHB, SUCLA2, SUCLG1, SUCLG2 19 ACO1(13), ACO2(8), CS(5), DLD(7), DLST(10), FH(11), IDH1(4), IDH2(7), IDH3A(5), IDH3B(5), IDH3G(9), MDH1(2), MDH2(5), PC(8), PCK1(15), SDHA(12), SDHB(1), SUCLA2(5), SUCLG1(1) 6893238 133 42 129 56 40 58 17 7 11 0 0.55 0.85 396 BIOGENIC_AMINE_SYNTHESIS AANAT, ACHE, CHAT, COMT, DBH, DDC, DXYS155E, GAD1, GAD2, HDC, MAOA, PAH, PNMT, SLC18A3, TH, TPH1 13 AANAT(4), ACHE(4), CHAT(1), DBH(12), DDC(11), GAD1(8), GAD2(12), HDC(10), MAOA(14), PAH(1), PNMT(3), TPH1(14) 4650223 94 34 93 17 20 32 21 1 18 2 0.55 0.85 397 NKCELLSPATHWAY Natural killer (NK) lymphocytes are inhibited by MHC and activated by surface glycoproteins on tumor or virus-infected cells, which undergo perforin-mediated lysis. B2M, HLA-A, IL18, ITGB1, KLRC1, KLRC2, KLRC3, KLRC4, KLRD1, LAT, MAP2K1, MAPK3, PAK1, PIK3CA, PIK3R1, PTK2B, PTPN6, RAC1, SYK, VAV1 18 B2M(2), HLA-A(5), IL18(1), ITGB1(12), KLRC1(2), KLRC2(3), KLRC3(1), KLRC4(3), KLRD1(2), MAP2K1(2), MAPK3(4), PAK1(3), PTK2B(16), SYK(6), VAV1(16) 5202552 78 34 75 24 20 29 10 5 12 2 0.55 0.86 398 VIPPATHWAY Apoptosis of activated T cells is inhibited by vasoactive intestinal peptide (VIP) and its relative PACAP. CALM1, CALM2, CALM3, CHUK, EGR2, EGR3, GNAQ, MAP3K1, MYC, NFATC1, NFATC2, NFKB1, NFKBIA, PLCG1, PPP3CA, PPP3CB, PPP3CC, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, RELA, SYT1, VIP, VIPR2 25 CALM2(3), CALM3(1), CHUK(11), EGR2(8), EGR3(9), MYC(7), NFATC2(15), NFKB1(12), NFKBIA(3), PLCG1(12), PPP3CA(4), PPP3CB(7), PPP3CC(6), PRKACB(2), PRKACG(6), PRKAR1A(4), PRKAR2A(4), PRKAR2B(5), RELA(6), SYT1(4), VIP(2) 8183838 131 43 127 47 28 53 20 9 21 0 0.55 0.86 399 HSA00071_FATTY_ACID_METABOLISM Genes involved in fatty acid metabolism ACAA1, ACAA2, ACADL, ACADM, ACADS, ACADSB, ACADVL, ACAT1, ACAT2, ACOX1, ACOX3, ACSL1, ACSL3, ACSL4, ACSL5, ACSL6, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, ADHFE1, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH7A1, ALDH9A1, CPT1A, CPT1B, CPT1C, CPT2, CYP4A11, CYP4A22, DCI, ECHS1, EHHADH, GCDH, HADH, HADHA, HADHB, HSD17B10, HSD17B4, PECI 46 ACAA1(5), ACAA2(2), ACADL(7), ACADM(6), ACADS(5), ACADSB(4), ACADVL(6), ACAT1(6), ACAT2(5), ACOX1(4), ACOX3(8), ACSL1(13), ACSL3(10), ACSL5(18), ACSL6(13), ADH1A(2), ADH1B(6), ADH1C(7), ADH4(5), ADH5(3), ADH6(9), ADH7(6), ADHFE1(7), ALDH1B1(7), ALDH2(2), ALDH3A1(6), ALDH3A2(2), ALDH7A1(2), ALDH9A1(4), CPT1A(10), CPT1C(15), CPT2(7), CYP4A11(5), CYP4A22(8), ECHS1(3), EHHADH(9), GCDH(5), HADH(1), HADHA(7), HADHB(5), HSD17B10(4), HSD17B4(10) 16278768 269 55 263 72 65 122 39 13 28 2 0.56 0.87 400 RNA_TRANSCRIPTION_REACTOME CCNH, CDK7, ERCC3, GTF2A2, GTF2B, GTF2E1, GTF2E2, GTF2F2, GTF2H1, GTF2H2, GTF2H4, ILK, MGC9850, MNAT1, POLR1A, POLR1B, POLR2A, POLR2B, POLR2C, POLR2E, POLR2F, POLR2G, POLR2H, POLR2I, POLR2J, POLR2K, POLR3B, POLR3D, POLR3E, POLR3H, POLR3K, TAF12, TAF13, TAF5, TAF6, TAF7, TAF9, TBP, VARS2L 36 CCNH(3), CDK7(6), ERCC3(11), GTF2B(5), GTF2E1(4), GTF2E2(5), GTF2F2(1), GTF2H1(8), GTF2H2(3), GTF2H4(2), ILK(8), MNAT1(2), POLR1A(15), POLR1B(16), POLR2A(25), POLR2B(20), POLR2C(5), POLR2E(1), POLR2F(2), POLR2H(3), POLR2K(2), POLR3B(7), POLR3D(3), POLR3E(5), POLR3H(3), TAF12(1), TAF5(6), TAF6(8), TAF7(3), TAF9(2), TBP(5) 12365860 190 52 183 68 41 81 21 15 32 0 0.56 0.87 401 ATRBRCAPATHWAY BRCA1 and 2 block cell cycle progression in response to DNA damage and promote double-stranded break repair; mutations induce breast cancer susceptibility. ATM, ATR, BRCA1, BRCA2, CHEK1, CHEK2, FANCA, FANCC, FANCD2, FANCE, FANCF, FANCG, HUS1, MRE11A, NBS1, RAD1, RAD17, RAD50, RAD51, RAD9A, TP53, TREX1 19 ATR(38), BRCA1(19), BRCA2(51), CHEK1(4), CHEK2(14), FANCC(8), FANCD2(17), FANCE(10), FANCF(4), FANCG(8), HUS1(5), MRE11A(12), RAD1(3), RAD17(9), RAD50(19), RAD51(4), RAD9A(2), TREX1(1) 13161969 228 57 222 33 47 88 38 13 36 6 0.57 0.87 402 RIBOSOMAL_PROTEINS ANK2, APG10L, RPS23, B3GALT4, CDR1, DGKI, FAU, IL6ST, KIAA1394, LOC133957, MRPL19, NET_5, PIGK, RPL10, RPL11, RPL12, RPL13, RPL13, LOC388344, RPL13A, RPL13A, LOC283340, LOC387930, RPL14, RPL14, RPL14L, RPL15, RPL15, LOC136321, LOC402694, RPL17, RPL17, dJ612B15.1, RPL18, RPL18A, LOC285053, LOC347544, LOC390354, RPL18A, LOC390354, RPL19, RPL21, RPL21, LOC387753, LOC388143, LOC388532, LOC388621, LOC389156, LOC390488, LOC402336, LOC440487, LOC440575, RPL21, LOC387753, LOC388143, LOC388532, LOC388621, LOC389156, LOC390488, LOC440487, LOC440575, RPL22, RPL23, RPL24, RPL24, SLC36A2, RPL26, LOC391126, LOC392501, LOC400055, LOC441073, LOC441533, RPL27, RPL27A, RPL27A, LOC389435, RPL28, RPL29, RPL29, LOC283412, LOC284064, LOC389655, LOC391738, LOC401911, RPL3, RPL30, RPL31, RPL32, RPL34, LOC342994, RPL35, RPL35A, RPL36, RPL37, RPL38, RPL39, RPL3L, RPL4, RPL41, RPL5, RPL5, LOC388907, RPL5, RNU66, LOC388907, RPL6, RPL7, RPL7, LOC389305, RPL7, LOC90193, LOC388401, LOC389305, LOC392550, LOC439954, RPL7A, RPL7A, LOC133748, LOC388474, RPL7A, RNU36B, LOC133748, LOC388474, RPL8, RPL9, RPLP0, RPLP0, RPLP0_like, RPLP1, RPLP2, RPS10, RPS10, LOC158104, LOC388885, LOC389127, LOC390842, LOC401817, RPS10, LOC388885, RPS11, RPS12, RPS13, RPS14, RPS15, RPS16, RPS16, LOC441876, RPS17, RPS17, LOC402057, RPS18, RPS19, RPS2, RPS2, LOC91561, LOC148430, LOC286444, LOC400963, LOC440589, RPS20, RPS21, RPS23, RPS24, RPS25, RPS26, RPS26L, LOC440440, RPS27, RPS27A, RPS27A, LOC388720, LOC389425, RPS28, RPS29, RPS3, RPS3A, RPS3A, LOC146053, LOC400652, LOC401016, LOC439992, RPS4X, RPS4Y1, RPS5, RPS6, RPS6KA1, RPS6KA2, RPS6KA3, RPS6KA6, RPS6KB1, RPS6KB2, RPS7, RPS8, RPS9, RPSA, LOC388524, LOC388654, SCDR10, TBC1D10C, TSPAN9, UBA52, UBB, UBC 88 ANK2(42), B3GALT4(6), CDR1(2), DGKI(21), FAU(1), IL6ST(10), MRPL19(6), PIGK(6), RPL10(5), RPL11(4), RPL12(1), RPL14(2), RPL15(1), RPL17(5), RPL18(4), RPL18A(4), RPL19(4), RPL21(2), RPL23(1), RPL24(3), RPL27(1), RPL27A(1), RPL28(2), RPL29(3), RPL3(5), RPL30(2), RPL31(1), RPL35(1), RPL35A(2), RPL37(3), RPL38(1), RPL3L(3), RPL4(4), RPL5(6), RPL6(2), RPL7(2), RPL8(1), RPL9(1), RPLP0(6), RPS10(2), RPS12(3), RPS13(1), RPS14(1), RPS18(4), RPS20(3), RPS21(2), RPS24(4), RPS25(1), RPS27(2), RPS27A(3), RPS29(2), RPS3(2), RPS3A(2), RPS4X(4), RPS5(1), RPS6(6), RPS6KA1(5), RPS6KA2(16), RPS6KA3(17), RPS6KA6(15), RPS6KB1(3), RPS6KB2(6), RPS7(3), RPS8(5), RPS9(1), RPSA(1), SLC36A2(5), TBC1D10C(2), TSPAN9(4), UBB(3), UBC(5) 17766543 311 62 302 106 89 115 45 12 50 0 0.57 0.87 403 APOPTOSIS_KEGG APAF1, BAD, BAX, BCL2, BCL2A1, BCL2L1, BCL2L2, BOK, CASP1, CASP1, COPl, CASP10, CASP2, CASP3, CASP4, CASP6, CASP7, CASP8, CASP9, CD40, CD40LG, CRADD, CYCS, DAXX, DFFA, DFFB, FADD, FAS, FASLG, HRK, IKBKE, LTA, MCL1, NFKB1, NFKBIA, NGFB, NGFR, NR3C1, NTRK1, PTPN13, RIPK1, SFRS2IP, TFG, TNF, TNFRSF1A, TNFRSF1B, TRADD, TRAF1, TRAF2, TRAF3, TRAF6 44 APAF1(19), BAD(2), BAX(4), BCL2A1(2), BCL2L1(3), BCL2L2(2), CASP1(7), CASP10(10), CASP2(9), CASP3(4), CASP4(8), CASP6(4), CASP7(4), CASP9(3), CD40(4), CD40LG(7), CRADD(3), CYCS(3), DAXX(11), DFFA(1), DFFB(3), FADD(1), FAS(7), FASLG(6), IKBKE(3), LTA(3), MCL1(1), NFKB1(12), NFKBIA(3), NGFR(4), NR3C1(13), NTRK1(11), PTPN13(27), RIPK1(8), TFG(5), TNF(1), TNFRSF1A(6), TNFRSF1B(3), TRAF1(5), TRAF2(5), TRAF3(6), TRAF6(4) 14669581 247 57 243 70 67 93 38 13 34 2 0.57 0.87 404 ACTINYPATHWAY The Arp 2/3 complex localizes to the Y-junction of polymerizing actin fibers that enable lamellipod extension and consequent cell motility. ABI-2, ACTA1, ACTR2, ACTR3, ARPC1A, ARPC1B, ARPC2, ARPC3, ARPC4, NCK1, NCKAP1, NTRK1, PIR, PSMA7, RAC1, WASF1, WASF2, WASF3, WASL 18 ACTA1(4), ACTR2(7), ACTR3(3), ARPC1A(7), ARPC1B(3), ARPC2(2), ARPC3(2), NCK1(4), NCKAP1(10), NTRK1(11), PIR(4), WASF1(3), WASF2(5), WASF3(9), WASL(8) 5403073 82 35 82 32 27 34 6 3 12 0 0.57 0.87 405 SARSPATHWAY The SARS coronavirus has a 30kb RNA genome containing rep, a large gene encoding viral protease Mpro. ANPEP, CKM, EIF4E, FBL, GPT, LDHA, LDHB, LDHC, MAPK14, NCL 9 ANPEP(13), CKM(3), EIF4E(4), FBL(4), LDHA(6), LDHB(2), LDHC(3), MAPK14(6), NCL(2) 2977223 43 27 43 21 11 15 7 5 3 2 0.58 0.88 406 SA_CASPASE_CASCADE Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. ADPRT, APAF1, BIRC2, BIRC3, BIRC4, CASP10, CASP3, CASP7, CASP8, CASP9, DFFA, DFFB, GZMB, PRF1, SCAP, SREBF1, SREBF2, TNFRSF6, TNFSF6 14 APAF1(19), BIRC2(13), BIRC3(3), CASP10(10), CASP3(4), CASP7(4), CASP9(3), DFFA(1), DFFB(3), GZMB(2), PRF1(8), SCAP(16), SREBF1(6), SREBF2(10) 5433665 102 36 98 30 31 36 12 7 16 0 0.58 0.88 407 ARGININECPATHWAY Related catabolic pathways process arginine, histidine, glutamine, and proline through glutamate to alpha-ketoglutamate, which feeds into the citric acid cycle. ALDH4A1, ARG1, GLS, GLUD1, OAT, PRODH 6 ALDH4A1(2), ARG1(5), GLS(10), GLUD1(4), OAT(7) 1641930 28 19 26 10 5 13 5 1 4 0 0.58 0.88 408 ST_GA12_PATHWAY G-alpha-12 promotes cell survival and proliferation, is involved in the stress response, and activates JNK. BF, BTK, DLG4, EPHB2, F2, F2RL1, F2RL2, F2RL3, JUN, MAP2K5, MAPK1, MAPK7, MAPK8, MYEF2, PLD1, PLD2, PLD3, PTK2, RAF1, RASAL1, SRC, TEC, VAV1 21 BTK(11), DLG4(13), EPHB2(10), F2(9), F2RL1(3), F2RL2(3), JUN(1), MAP2K5(2), MAPK1(2), MAPK7(17), MAPK8(7), MYEF2(6), PLD1(16), PLD2(7), PLD3(3), PTK2(11), RAF1(7), RASAL1(14), SRC(2), TEC(5), VAV1(16) 9304748 165 48 160 58 43 69 26 5 20 2 0.58 0.88 409 CCR5PATHWAY CCR5 is a G-protein coupled receptor expressed in macrophages that recognizes chemokine ligands and is targeted by the HIV envelope protein GP120. CALM1, CALM2, CALM3, CCL2, CCL4, CCR5, CXCL12, CXCR4, FOS, GNAQ, JUN, MAPK14, MAPK8, PLCG1, PRKCA, PRKCB1, PTK2B, SYT1 16 CALM2(3), CALM3(1), CCL4(1), CXCL12(3), CXCR4(1), FOS(6), JUN(1), MAPK14(6), MAPK8(7), PLCG1(12), PRKCA(10), PTK2B(16), SYT1(4) 4564422 71 33 69 32 20 24 9 8 10 0 0.59 0.88 410 UREA_CYCLE_AND_METABOLISM_OF_AMINO_GROUPS ACY1, ALDH18A1, ARG1, ARG2, ASL, ASS, CKB, CKM, CKMT1, CKMT1B, CKMT1A, CKMT2, CPS1, GAMT, GATM, GLUD1, NAGS, OAT, ODC1, OTC, PYCR1, SMS 16 ACY1(3), ALDH18A1(13), ARG1(5), ARG2(6), ASL(4), CKM(3), CKMT1A(5), CKMT1B(2), CKMT2(5), CPS1(24), GATM(8), GLUD1(4), OAT(7), ODC1(3), OTC(8), SMS(8) 5381563 108 36 104 35 27 46 16 5 10 4 0.59 0.89 411 ARENRF2PATHWAY Nrf1 and nrf2 are transcription factors that bind to antioxidant response elements (AREs), promoters of genes involved in oxidative damage control. CREB1, FOS, FXYD2, JUN, KEAP1, MAFF, MAFG, MAFK, MAPK1, MAPK14, MAPK8, NFE2L2, PRKCA, PRKCB1 8 CREB1(5), FOS(6), JUN(1), KEAP1(8), MAPK1(2), MAPK14(6), MAPK8(7), PRKCA(10) 2467436 45 24 45 9 9 18 5 5 8 0 0.59 0.89 412 BLOOD_CLOTTING_CASCADE F10, F11, F12, F13B, F2, F5, F7, F8, F8A1, F9, FGA, FGB, FGG, LPA, PLG, PLAT, PLAU, PLG, SERPINB2, SERPINE1, SERPINF2, VWF 20 F10(10), F11(10), F12(3), F13B(13), F2(9), F5(46), F7(2), F8(41), F9(11), FGA(30), FGB(6), FGG(12), LPA(14), PLAT(6), PLAU(5), PLG(13), SERPINB2(9), SERPINE1(5), SERPINF2(5), VWF(31) 12089576 281 53 269 73 83 112 44 13 25 4 0.60 0.89 413 RHOPATHWAY RhoA is a G protein whose active form stabilizes actin structures such as focal adhesions and activates Rock1, which phosphorylates myosin light chains. ACTR2, ACTR3, ARHA, ARHGAP1, ARHGAP4, ARHGAP5, ARHGAP6, ARHGEF1, ARHGEF11, ARHGEF5, ARPC1A, ARPC1B, ARPC2, ARPC3, ARPC4, BAIAP2, CFL1, DIAPH1, GSN, LIMK1, MYL2, MYLK, OPHN1, PFN1, PIP5K1A, PIP5K1B, PPP1R12B, ROCK1, SRC, TLN1, VCL 30 ACTR2(7), ACTR3(3), ARHGAP1(2), ARHGAP4(15), ARHGAP5(24), ARHGAP6(13), ARHGEF1(11), ARHGEF11(22), ARHGEF5(11), ARPC1A(7), ARPC1B(3), ARPC2(2), ARPC3(2), BAIAP2(1), CFL1(1), DIAPH1(11), GSN(5), LIMK1(7), MYL2(1), MYLK(17), OPHN1(13), PFN1(1), PIP5K1A(7), PIP5K1B(6), PPP1R12B(18), ROCK1(27), SRC(2), TLN1(28), VCL(14) 16054825 281 63 274 79 89 106 29 18 31 8 0.60 0.89 414 IRINOTECAN_PATHWAY_PHARMGKB ABCC1, ABCC2, ABCG2, BCHE, CES1, CES2, CES4, CYP3A4, CYP3A5, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, UGT1A6 16 ABCC1(23), ABCC2(30), ABCG2(8), CES1(12), CES2(3), CYP3A4(14), CYP3A5(7), UGT1A1(6), UGT1A10(8), UGT1A3(4), UGT1A4(4), UGT1A5(7), UGT1A6(5), UGT1A7(9), UGT1A8(4), UGT1A9(4) 7739298 148 41 142 40 35 64 22 11 14 2 0.60 0.89 415 PKCPATHWAY Gq-coupled receptors promote hydrolysis of PIP2 to DAG and IP3, which causes calcium influx and activates protein kinase C. GNAQ, NFKB1, NFKBIA, PLCB1, PRKCA, PRKCB1, RELA 6 NFKB1(12), NFKBIA(3), PLCB1(6), PRKCA(10), RELA(6) 2891900 37 23 37 16 4 13 10 4 6 0 0.60 0.89 416 P35ALZHEIMERSPATHWAY p35, a neuron-specific activator of cyclin-dependent kinase 5, is cleaved to p25 in Alzheimer's disease and promotoes hyperphosphorylated tau formation and apoptosis. APP, CAPN1, CAPNS1, CAPNS2, CDK5, CDK5R1, CSNK1A1, CSNK1D, GSK3B, MAPT, PPP2CA 10 CAPN1(4), CAPNS1(3), CAPNS2(6), CDK5(1), CDK5R1(5), CSNK1A1(5), GSK3B(11), MAPT(11), PPP2CA(6) 2556344 52 24 51 18 10 24 4 3 11 0 0.61 0.89 417 HSA04612_ANTIGEN_PROCESSING_AND_PRESENTATION Genes involved in antigen processing and presentation B2M, CALR, CANX, CD4, CD74, CD8A, CD8B, CIITA, CREB1, CTSB, CTSL1, CTSS, HLA-A, HLA-A29.1, HLA-B, HLA-C, HLA-DMA, HLA-DMB, HLA-DOA, HLA-DOB, HLA-DPA1, HLA-DPB1, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRA, HLA-DRB1, HLA-DRB3, HLA-DRB4, HLA-DRB5, HLA-E, HLA-F, HLA-G, HSP90AA1, HSP90AB1, HSPA5, IFI30, IFNA1, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA2, IFNA21, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, KIR2DL1, KIR2DL2, KIR2DL3, KIR2DL4, KIR2DL5A, KIR2DS1, KIR2DS2, KIR2DS3, KIR2DS4, KIR2DS5, KIR3DL1, KIR3DL2, KIR3DL3, KLRC1, KLRC2, KLRC3, KLRC4, KLRD1, LGMN, LTA, NFYA, NFYB, NFYC, PDIA3, PSME1, PSME2, RFX5, RFXANK, RFXAP, TAP1, TAP2, TAPBP 72 B2M(2), CALR(4), CANX(8), CD4(8), CD74(1), CD8A(3), CD8B(1), CIITA(21), CREB1(5), CTSB(1), CTSL1(7), CTSS(6), HLA-A(5), HLA-B(3), HLA-DMA(4), HLA-DMB(2), HLA-DOA(3), HLA-DOB(4), HLA-DPA1(1), HLA-DPB1(2), HLA-DQA1(2), HLA-DQA2(1), HLA-DQB1(1), HLA-DRB1(1), HLA-DRB5(1), HLA-E(2), HLA-F(3), HLA-G(3), HSP90AA1(7), HSP90AB1(20), HSPA5(8), IFNA10(2), IFNA13(3), IFNA14(3), IFNA16(2), IFNA17(2), IFNA2(1), IFNA21(2), IFNA4(3), IFNA5(2), IFNA6(6), IFNA7(2), IFNA8(2), KIR2DL1(6), KIR2DL3(2), KIR2DL4(3), KIR2DS4(6), KIR3DL1(7), KIR3DL2(7), KIR3DL3(3), KLRC1(2), KLRC2(3), KLRC3(1), KLRC4(3), KLRD1(2), LGMN(8), LTA(3), NFYA(7), NFYB(2), NFYC(1), PDIA3(6), PSME1(2), PSME2(2), RFX5(13), RFXANK(4), RFXAP(1), TAP1(7), TAP2(2), TAPBP(5) 16547882 278 58 272 69 80 119 31 10 36 2 0.61 0.89 418 KREBPATHWAY The Krebs (citric acid) cycle takes place in mitochondria, where it extracts energy in the form of electron carriers NADH and FADH2, which drive the electron transport chain. ACO2, CS, FH, IDH2, MDH1, OGDH, SDHA, SUCLA2 8 ACO2(8), CS(5), FH(11), IDH2(7), MDH1(2), OGDH(11), SDHA(12), SUCLA2(5) 3326163 61 28 60 26 17 30 6 4 4 0 0.61 0.89 419 HSA05130_PATHOGENIC_ESCHERICHIA_COLI_INFECTION_EHEC Genes involved in pathogenic Escherichia coli infection - EHEC ABL1, ACTB, ACTG1, ARHGEF2, ARPC5, ARPC5L, CD14, CDC42, CDH1, CLDN1, CTNNB1, CTTN, EZR, FYN, HCLS1, ITGB1, KRT18, LOC643224, LOC654264, LY96, NCK1, NCK2, NCL, OCLN, PRKCA, RHOA, ROCK1, ROCK2, TLR4, TLR5, TUBA1A, TUBA1B, TUBA1C, TUBA3C, TUBA3D, TUBA3E, TUBA4A, TUBA8, TUBAL3, TUBB, TUBB1, TUBB2A, TUBB2B, TUBB2C, TUBB3, TUBB4, TUBB4Q, TUBB6, TUBB8, WAS, WASL, YWHAQ, YWHAZ 49 ABL1(9), ACTB(5), ARHGEF2(10), ARPC5(1), CD14(2), CDC42(5), CDH1(15), CLDN1(2), CTTN(8), EZR(6), FYN(7), HCLS1(8), ITGB1(12), LY96(4), NCK1(4), NCK2(8), NCL(2), OCLN(5), PRKCA(10), RHOA(4), ROCK1(27), ROCK2(15), TLR4(14), TLR5(8), TUBA1A(5), TUBA1B(4), TUBA1C(9), TUBA3C(7), TUBA3D(5), TUBA3E(15), TUBA4A(7), TUBA8(11), TUBAL3(5), TUBB1(8), TUBB2A(4), TUBB2B(2), TUBB2C(1), TUBB4(9), TUBB4Q(4), TUBB6(4), TUBB8(3), WASL(8), YWHAQ(3), YWHAZ(1) 17742404 306 65 302 92 80 133 27 11 53 2 0.61 0.89 420 HSA05131_PATHOGENIC_ESCHERICHIA_COLI_INFECTION_EPEC Genes involved in pathogenic Escherichia coli infection - EPEC ABL1, ACTB, ACTG1, ARHGEF2, ARPC5, ARPC5L, CD14, CDC42, CDH1, CLDN1, CTNNB1, CTTN, EZR, FYN, HCLS1, ITGB1, KRT18, LOC643224, LOC654264, LY96, NCK1, NCK2, NCL, OCLN, PRKCA, RHOA, ROCK1, ROCK2, TLR4, TLR5, TUBA1A, TUBA1B, TUBA1C, TUBA3C, TUBA3D, TUBA3E, TUBA4A, TUBA8, TUBAL3, TUBB, TUBB1, TUBB2A, TUBB2B, TUBB2C, TUBB3, TUBB4, TUBB4Q, TUBB6, TUBB8, WAS, WASL, YWHAQ, YWHAZ 49 ABL1(9), ACTB(5), ARHGEF2(10), ARPC5(1), CD14(2), CDC42(5), CDH1(15), CLDN1(2), CTTN(8), EZR(6), FYN(7), HCLS1(8), ITGB1(12), LY96(4), NCK1(4), NCK2(8), NCL(2), OCLN(5), PRKCA(10), RHOA(4), ROCK1(27), ROCK2(15), TLR4(14), TLR5(8), TUBA1A(5), TUBA1B(4), TUBA1C(9), TUBA3C(7), TUBA3D(5), TUBA3E(15), TUBA4A(7), TUBA8(11), TUBAL3(5), TUBB1(8), TUBB2A(4), TUBB2B(2), TUBB2C(1), TUBB4(9), TUBB4Q(4), TUBB6(4), TUBB8(3), WASL(8), YWHAQ(3), YWHAZ(1) 17742404 306 65 302 92 80 133 27 11 53 2 0.61 0.89 421 GPCRDB_CLASS_A_RHODOPSIN_LIKE2 CYSLTR1, CYSLTR2, GPR109B, GPR161, GPR171, GPR18, GPR34, GPR39, GPR41, GPR42, GPR45, GPR65, GPR68, GPR75, GPR81, LYPDC1 13 CYSLTR1(5), CYSLTR2(6), GPR161(3), GPR171(6), GPR18(2), GPR34(6), GPR39(10), GPR45(7), GPR65(10), GPR68(4), GPR75(10) 3491073 69 28 65 31 16 28 18 3 4 0 0.61 0.89 422 ALKALOID_BIOSYNTHESIS_II ABP1, AOC2, AOC3, CES1, ESD 5 ABP1(12), AOC2(6), AOC3(14), CES1(12), ESD(2) 2205970 46 23 43 15 13 16 10 3 4 0 0.61 0.89 423 HSA00670_ONE_CARBON_POOL_BY_FOLATE Genes involved in one carbon pool by folate ALDH1L1, AMT, ATIC, DHFR, FTCD, GART, MTFMT, MTHFD1, MTHFD1L, MTHFD2, MTHFR, MTHFS, MTR, SHMT1, SHMT2, TYMS 15 ALDH1L1(9), AMT(5), ATIC(9), DHFR(3), GART(8), MTFMT(1), MTHFD1(6), MTHFD1L(12), MTHFD2(3), MTHFR(7), MTR(13), SHMT1(6), SHMT2(8), TYMS(1) 6443201 91 36 87 32 22 42 9 3 13 2 0.62 0.89 424 GLUCONEOGENESIS ACYP1, ACYP2, ADH1A, ADH1A, ADH1B, ADH1C, ADH1B, ADH1C, ADH4, ADH6, ADH7, ADHFE1, AKR1A1, ALDH1A1, ALDH1A2, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH3B1, ALDH3B2, ALDH9A1, ALDOA, ALDOB, ALDOC, BPGM, DLAT, DLD, ENO1, ENO2, ENO3, FBP1, FBP2, G6PC, GAPDH, GCK, GPI, HK1, HK2, HK3, LDHA, LDHB, LDHC, PDHA1, PDHA2, PDHB, PFKM, PFKP, PGAM1, PGK1, PGM1, PGM3, PKLR, PKM2, TPI1 53 ACYP1(2), ADH1A(2), ADH1B(6), ADH1C(7), ADH4(5), ADH6(9), ADH7(6), ADHFE1(7), AKR1A1(1), ALDH1A1(6), ALDH1A2(9), ALDH1B1(7), ALDH2(2), ALDH3A1(6), ALDH3A2(2), ALDH3B1(5), ALDH3B2(8), ALDH9A1(4), ALDOA(6), ALDOB(9), ALDOC(4), BPGM(2), DLAT(2), DLD(7), ENO1(5), ENO2(3), ENO3(4), FBP1(4), G6PC(6), GAPDH(2), GCK(5), GPI(9), HK1(13), HK2(8), HK3(12), LDHA(6), LDHB(2), LDHC(3), PDHA1(4), PDHA2(10), PDHB(7), PFKM(7), PFKP(11), PGAM1(2), PGK1(6), PGM1(9), PGM3(6), PKLR(10), PKM2(5), TPI1(1) 16614324 284 61 278 94 83 116 34 16 33 2 0.62 0.89 425 GLYCOLYSIS ACYP1, ACYP2, ADH1A, ADH1A, ADH1B, ADH1C, ADH1B, ADH1C, ADH4, ADH6, ADH7, ADHFE1, AKR1A1, ALDH1A1, ALDH1A2, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH3B1, ALDH3B2, ALDH9A1, ALDOA, ALDOB, ALDOC, BPGM, DLAT, DLD, ENO1, ENO2, ENO3, FBP1, FBP2, G6PC, GAPDH, GCK, GPI, HK1, HK2, HK3, LDHA, LDHB, LDHC, PDHA1, PDHA2, PDHB, PFKM, PFKP, PGAM1, PGK1, PGM1, PGM3, PKLR, PKM2, TPI1 53 ACYP1(2), ADH1A(2), ADH1B(6), ADH1C(7), ADH4(5), ADH6(9), ADH7(6), ADHFE1(7), AKR1A1(1), ALDH1A1(6), ALDH1A2(9), ALDH1B1(7), ALDH2(2), ALDH3A1(6), ALDH3A2(2), ALDH3B1(5), ALDH3B2(8), ALDH9A1(4), ALDOA(6), ALDOB(9), ALDOC(4), BPGM(2), DLAT(2), DLD(7), ENO1(5), ENO2(3), ENO3(4), FBP1(4), G6PC(6), GAPDH(2), GCK(5), GPI(9), HK1(13), HK2(8), HK3(12), LDHA(6), LDHB(2), LDHC(3), PDHA1(4), PDHA2(10), PDHB(7), PFKM(7), PFKP(11), PGAM1(2), PGK1(6), PGM1(9), PGM3(6), PKLR(10), PKM2(5), TPI1(1) 16614324 284 61 278 94 83 116 34 16 33 2 0.62 0.89 426 TNFR1PATHWAY Tumor necrosis factor alpha binds to its receptor TNFR1 and induces caspase-dependent apoptosis. ADPRT, ARHGDIB, BAG4, CASP2, CASP3, CASP8, CRADD, DFFA, DFFB, FADD, JUN, LMNA, LMNB1, LMNB2, MADD, MAP2K4, MAP3K1, MAP3K7, MAPK8, PAK1, PAK2, PRKDC, RB1, RIPK1, SPTAN1, TNF, TNFRSF1A, TRADD, TRAF2 23 ARHGDIB(2), BAG4(4), CASP2(9), CASP3(4), CRADD(3), DFFA(1), DFFB(3), FADD(1), JUN(1), LMNA(8), LMNB1(5), MADD(21), MAP2K4(6), MAP3K7(8), MAPK8(7), PAK1(3), PAK2(6), PRKDC(70), RIPK1(8), SPTAN1(29), TNF(1), TNFRSF1A(6), TRAF2(5) 11491837 211 52 208 50 50 82 30 15 31 3 0.62 0.89 427 CARBON_FIXATION ALDOA, ALDOB, ALDOC, FBP1, FBP2, GOT1, GOT2, GPT, GPT2, MDH1, MDH2, ME1, ME2, ME3, PGK1, PKLR, PKM2, RPE, RPE, LOC440001, RPIA, TKT, TPI1 20 ALDOA(6), ALDOB(9), ALDOC(4), FBP1(4), GOT1(6), GOT2(5), GPT2(7), MDH1(2), MDH2(5), ME1(10), ME2(7), ME3(7), PGK1(6), PKLR(10), PKM2(5), RPE(3), RPIA(7), TKT(7), TPI1(1) 5828254 111 37 109 37 31 47 13 6 12 2 0.62 0.89 428 HSA00730_THIAMINE_METABOLISM Genes involved in thiamine metabolism LHPP, MTMR1, MTMR2, MTMR6, NFS1, PHPT1, THTPA, TPK1 8 LHPP(2), MTMR1(16), MTMR2(4), MTMR6(8), NFS1(8), PHPT1(2), THTPA(1), TPK1(2) 2210750 43 22 41 18 7 17 8 1 10 0 0.62 0.89 429 CIRCADIANPATHWAY A heterodimer composed of Bmal1 and Clock acts as a transcription factor for proteins that regulate circadian rhythms, such as Per and Cry. ARNTL, CLOCK, CRY1, CRY2, CSNK1E, PER1 6 ARNTL(12), CLOCK(11), CRY1(6), CRY2(4), CSNK1E(10), PER1(15) 2749217 58 24 57 17 16 20 10 2 8 2 0.62 0.89 430 DNA_POLYMERASE POLA, POLB, POLD1, POLD2, POLE, POLG, POLL, POLQ, POLS 7 POLB(4), POLD1(15), POLD2(6), POLE(1), POLG(7), POLL(8), POLQ(23) 5901627 64 36 63 15 15 29 9 4 7 0 0.62 0.89 431 HSA00480_GLUTATHIONE_METABOLISM Genes involved in glutathione metabolism ANPEP, G6PD, GCLC, GCLM, GGT1, GGTL3, GGTL4, GPX1, GPX2, GPX3, GPX4, GPX5, GPX6, GPX7, GSR, GSS, GSTA1, GSTA2, GSTA3, GSTA4, GSTA5, GSTK1, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, GSTO2, GSTP1, GSTT1, GSTT2, GSTZ1, IDH1, IDH2, MGST1, MGST2, MGST3, OPLAH, TXNDC12 34 ANPEP(13), G6PD(3), GCLC(8), GCLM(3), GGT1(10), GPX3(4), GPX5(7), GPX6(6), GPX7(1), GSR(5), GSS(5), GSTA1(5), GSTA2(6), GSTA3(3), GSTA4(3), GSTA5(2), GSTK1(5), GSTM1(3), GSTM2(1), GSTM3(4), GSTM4(2), GSTM5(2), GSTO2(2), GSTP1(2), GSTZ1(4), IDH1(4), IDH2(7), MGST1(3), MGST3(1), TXNDC12(5) 7001266 129 43 122 48 49 41 18 11 8 2 0.62 0.89 432 HSA00330_ARGININE_AND_PROLINE_METABOLISM Genes involved in arginine and proline metabolism ALDH4A1, ARG1, ARG2, ASL, ASS1, CKB, CKM, CKMT1A, CKMT1B, CKMT2, CPS1, DAO, EPRS, GAMT, GATM, GLUD1, GLUD2, GOT1, GOT2, LAP3, NOS1, NOS2A, NOS3, OAT, OTC, P4HA1, P4HA2, P4HA3, PARS2, PRODH, PYCR1, PYCR2, PYCRL, RARS, RARS2 31 ALDH4A1(2), ARG1(5), ARG2(6), ASL(4), ASS1(3), CKM(3), CKMT1A(5), CKMT1B(2), CKMT2(5), CPS1(24), DAO(5), EPRS(11), GATM(8), GLUD1(4), GLUD2(9), GOT1(6), GOT2(5), LAP3(7), NOS1(21), NOS3(11), OAT(7), OTC(8), P4HA1(8), P4HA2(10), P4HA3(5), PARS2(4), PYCR2(3), PYCRL(1), RARS(11), RARS2(7) 11471044 210 52 204 79 48 98 32 10 18 4 0.62 0.89 433 EIF2PATHWAY Eukaryotic initiation factor 2 (EIF2) initiates translation by transferring Met-tRNA to the 40S ribosome in a GTP-dependent process. EIF2AK3, EIF2AK4, EIF2B5, EIF2S1, EIF2S2, EIF2S3, EIF5, GSK3B, HRI, PPP1CA, PRKR 9 EIF2AK3(14), EIF2AK4(12), EIF2B5(6), EIF2S1(1), EIF2S2(5), EIF2S3(6), EIF5(3), GSK3B(11), PPP1CA(6) 4058459 64 32 63 16 16 27 5 5 11 0 0.63 0.89 434 HYPERTROPHY_MODEL ADAM10, ANKRD1, ATF3, CYR61, DUSP14, EIF4E, EIF4EBP1, GDF8, HBEGF, IFNG, IFRD1, IL18, IL1A, IL1R1, JUND, MYOG, NR4A3, TCF8, VEGF, WDR1 16 ADAM10(4), ANKRD1(4), ATF3(4), CYR61(3), DUSP14(3), EIF4E(4), HBEGF(3), IFNG(5), IFRD1(10), IL18(1), IL1A(1), IL1R1(5), MYOG(1), NR4A3(10), WDR1(10) 3627542 68 29 67 20 23 24 13 2 6 0 0.63 0.89 435 HSA00400_PHENYLALANINE_TYROSINE_AND_TRYPTOPHAN_BIOSYNTHESIS Genes involved in phenylalanine, tyrosine and tryptophan biosynthesis FARS2, FARSA, FARSB, GOT1, GOT2, PAH, TAT, YARS, YARS2 9 FARS2(2), FARSA(6), FARSB(7), GOT1(6), GOT2(5), PAH(1), TAT(9), YARS(8), YARS2(3) 3071867 47 25 46 14 14 17 9 4 3 0 0.63 0.89 436 S1PPATHWAY At low cholesterol concentrations, sterol-regulatory element binding proteins (SREBPs) act as transcription factors to promote cholesterol uptake and biosynthesis. EPLIN, HMGCS1, LDLR, MBTPS1, MBTPS2, SCAP, SREBF1, SREBF2 7 HMGCS1(4), LDLR(12), MBTPS1(13), MBTPS2(15), SCAP(16), SREBF1(6), SREBF2(10) 3548194 76 30 75 20 21 34 7 4 10 0 0.63 0.89 437 HSA04742_TASTE_TRANSDUCTION Genes involved in taste transduction ACCN1, ADCY4, ADCY6, ADCY8, CACNA1A, CACNA1B, GNAS, GNAT3, GNB1, GNB3, GNG13, GNG3, GRM4, ITPR3, KCNB1, PDE1A, PLCB2, PRKACA, PRKACB, PRKACG, PRKX, PRKY, SCNN1A, SCNN1B, SCNN1G, TAS1R1, TAS1R2, TAS1R3, TAS2R1, TAS2R10, TAS2R13, TAS2R14, TAS2R16, TAS2R3, TAS2R38, TAS2R39, TAS2R4, TAS2R40, TAS2R41, TAS2R42, TAS2R43, TAS2R44, TAS2R45, TAS2R46, TAS2R48, TAS2R49, TAS2R5, TAS2R50, TAS2R60, TAS2R7, TAS2R8, TAS2R9, TRPM5 46 ACCN1(4), ADCY4(8), ADCY6(16), ADCY8(16), CACNA1A(19), CACNA1B(1), GNAS(25), GNAT3(7), GNB1(3), GNB3(4), GNG13(2), GNG3(3), GRM4(16), ITPR3(23), KCNB1(17), PDE1A(12), PLCB2(9), PRKACA(4), PRKACB(2), PRKACG(6), PRKX(4), SCNN1A(5), SCNN1B(6), SCNN1G(13), TAS1R1(11), TAS1R2(12), TAS2R1(4), TAS2R10(6), TAS2R13(4), TAS2R14(6), TAS2R16(3), TAS2R3(2), TAS2R38(4), TAS2R39(10), TAS2R4(3), TAS2R40(4), TAS2R41(2), TAS2R42(5), TAS2R46(1), TAS2R5(5), TAS2R50(4), TAS2R60(7), TAS2R7(4), TAS2R8(6), TAS2R9(1) 18971820 329 60 322 123 91 141 42 17 38 0 0.64 0.90 438 HSA00190_OXIDATIVE_PHOSPHORYLATION Genes involved in oxidative phosphorylation ATP12A, ATP4A, ATP4B, ATP5A1, ATP5B, ATP5C1, ATP5D, ATP5E, ATP5F1, ATP5G1, ATP5G2, ATP5G3, ATP5H, ATP5I, ATP5J, ATP5J2, ATP5L, ATP5O, ATP6, ATP6AP1, ATP6V0A1, ATP6V0A2, ATP6V0A4, ATP6V0B, ATP6V0C, ATP6V0D1, ATP6V0D2, ATP6V0E1, ATP6V1A, ATP6V1B1, ATP6V1B2, ATP6V1C1, ATP6V1C2, ATP6V1D, ATP6V1E1, ATP6V1E2, ATP6V1F, ATP6V1G1, ATP6V1G2, ATP6V1G3, ATP6V1H, ATP8, COX1, COX10, COX15, COX17, COX2, COX3, COX4I1, COX4I2, COX5A, COX5B, COX6A1, COX6A2, COX6B1, COX6B2, COX6C, COX7A1, COX7A2, COX7B, COX7B2, COX7C, COX8A, COX8C, CYC1, CYTB, LHPP, ND1, ND2, ND3, ND4, ND4L, ND5, ND6, NDUFA1, NDUFA10, NDUFA11, NDUFA12, NDUFA13, NDUFA2, NDUFA3, NDUFA4, NDUFA4L2, NDUFA5, NDUFA6, NDUFA7, NDUFA8, NDUFA9, NDUFAB1, NDUFB1, NDUFB10, NDUFB11, NDUFB2, NDUFB3, NDUFB4, NDUFB5, NDUFB6, NDUFB7, NDUFB8, NDUFB9, NDUFC1, NDUFC2, NDUFS1, NDUFS2, NDUFS3, NDUFS4, NDUFS5, NDUFS6, NDUFS7, NDUFS8, NDUFV1, NDUFV2, NDUFV3, PPA1, PPA2, SDHA, SDHB, SDHC, SDHD, TCIRG1, UCRC, UQCR, UQCRB, UQCRC1, UQCRC2, UQCRFS1, UQCRH, UQCRQ 104 ATP12A(17), ATP4A(13), ATP4B(2), ATP5A1(11), ATP5B(4), ATP5C1(1), ATP5E(1), ATP5F1(5), ATP5G1(4), ATP5G2(1), ATP5I(1), ATP5J(4), ATP5L(1), ATP5O(1), ATP6AP1(7), ATP6V0A1(5), ATP6V0A2(11), ATP6V0A4(14), ATP6V0B(2), ATP6V0C(2), ATP6V0D1(3), ATP6V0D2(10), ATP6V1A(7), ATP6V1B2(7), ATP6V1C1(3), ATP6V1C2(9), ATP6V1D(4), ATP6V1E1(3), ATP6V1E2(4), ATP6V1F(2), ATP6V1G1(1), ATP6V1G2(4), ATP6V1G3(2), ATP6V1H(5), COX10(5), COX15(4), COX4I1(2), COX4I2(2), COX5A(1), COX5B(1), COX6A1(2), COX6B1(4), COX6C(2), COX7A2(2), COX7B(2), COX7B2(2), COX7C(2), COX8A(1), COX8C(2), CYC1(2), LHPP(2), NDUFA1(1), NDUFA10(8), NDUFA13(1), NDUFA2(3), NDUFA3(4), NDUFA4(2), NDUFA4L2(1), NDUFA6(3), NDUFA8(6), NDUFA9(4), NDUFAB1(2), NDUFB1(1), NDUFB5(2), NDUFB6(1), NDUFB8(1), NDUFC1(1), NDUFC2(2), NDUFS1(13), NDUFS2(5), NDUFS4(2), NDUFS5(1), NDUFS8(3), NDUFV1(4), NDUFV2(3), NDUFV3(2), PPA1(5), PPA2(5), SDHA(12), SDHB(1), SDHC(6), SDHD(1), TCIRG1(8), UQCRB(3), UQCRC1(6), UQCRC2(4), UQCRH(1), UQCRQ(2) 18348030 339 67 336 93 94 141 39 18 47 0 0.64 0.90 439 HSP27PATHWAY Hsp27 oligomers have molecular chaperone activity and protect heat-stressed cells against apoptosis. ACTA1, APAF1, BCL2, CASP3, CASP9, CYCS, DAXX, FAS, FASLG, HSPB1, HSPB2, IL1A, MAPKAPK2, MAPKAPK3, TNF, TNFRSF6 14 ACTA1(4), APAF1(19), CASP3(4), CASP9(3), CYCS(3), DAXX(11), FAS(7), FASLG(6), HSPB2(1), IL1A(1), MAPKAPK2(6), MAPKAPK3(4), TNF(1) 3808943 70 30 69 20 19 25 11 5 10 0 0.64 0.90 440 P53PATHWAY p53 induces cell cycle arrest or apoptosis under conditions of DNA damage. APAF1, ATM, BAX, BCL2, CCND1, CCNE1, CDK2, CDK4, CDKN1A, E2F1, GADD45A, MDM2, PCNA, RB1, TIMP3, TP53 11 APAF1(19), BAX(4), CDK2(5), CDK4(4), CDKN1A(1), MDM2(6), PCNA(3), TIMP3(8) 2732487 50 24 49 15 12 20 7 3 8 0 0.65 0.90 441 PROPANOATE_METABOLISM ABAT, ACACA, ACADL, ACADM, ACADSB, ACAS2, ACAS2L, ACAT1, ACAT2, ALDH1A1, ALDH1A2, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH6A1, ALDH9A1, ECHS1, EHHADH, HADHA, LDHA, LDHB, LDHC, MCEE, MLYCD, MUT, PCCA, PCCB, SDS, SUCLA2, SUCLG1, SUCLG2 30 ABAT(9), ACACA(27), ACADL(7), ACADM(6), ACADSB(4), ACAT1(6), ACAT2(5), ALDH1A1(6), ALDH1A2(9), ALDH1B1(7), ALDH2(2), ALDH3A1(6), ALDH3A2(2), ALDH6A1(5), ALDH9A1(4), ECHS1(3), EHHADH(9), HADHA(7), LDHA(6), LDHB(2), LDHC(3), MLYCD(5), MUT(7), PCCA(10), PCCB(8), SDS(3), SUCLA2(5), SUCLG1(1) 11163212 174 48 171 52 45 63 30 13 23 0 0.65 0.91 442 PHENYLALANINE_TYROSINE_AND_TRYPTOPHAN_BIOSYNTHESIS ENO1, ENO2, ENO3, FARS2, FARSLB, GOT1, GOT2, PAH, TAT, YARS 9 ENO1(5), ENO2(3), ENO3(4), FARS2(2), GOT1(6), GOT2(5), PAH(1), TAT(9), YARS(8) 2926077 43 23 42 14 9 19 6 4 5 0 0.66 0.91 443 HSA00785_LIPOIC_ACID_METABOLISM Genes involved in lipoic acid metabolism LIAS, LIPT1, LOC387787 2 LIAS(7), LIPT1(5) 529863 12 9 12 3 2 7 2 0 1 0 0.66 0.91 444 HSA04740_OLFACTORY_TRANSDUCTION Genes involved in olfactory transduction ADCY3, ADRBK2, ARRB2, CALM1, CALM2, CALM3, CALML3, CALML6, CAMK2A, CAMK2B, CAMK2D, CAMK2G, CLCA1, CLCA2, CLCA4, CNGA3, CNGA4, CNGB1, GNAL, GUCA1A, GUCA1B, GUCA1C, PDC, PDE1C, PRKACA, PRKACB, PRKACG, PRKG1, PRKG2, PRKX, PRKY 30 ADCY3(8), ADRBK2(10), ARRB2(3), CALM2(3), CALM3(1), CALML6(4), CAMK2A(8), CAMK2B(2), CAMK2D(7), CAMK2G(8), CLCA1(20), CLCA2(13), CLCA4(16), CNGA3(13), CNGA4(11), CNGB1(14), GNAL(6), GUCA1A(5), GUCA1B(3), GUCA1C(3), PDE1C(14), PRKACA(4), PRKACB(2), PRKACG(6), PRKG1(9), PRKG2(10), PRKX(4) 10456011 207 51 204 85 54 85 31 7 28 2 0.66 0.91 445 HSA00604_GLYCOSPHINGOLIPID_BIOSYNTHESIS_GANGLIOSERIES Genes involved in glycosphingolipid biosynthesis - ganglioseries B3GALT4, B4GALNT1, GLB1, HEXA, HEXB, LCT, SLC33A1, ST3GAL1, ST3GAL2, ST3GAL5, ST6GALNAC3, ST6GALNAC4, ST6GALNAC5, ST6GALNAC6, ST8SIA1, ST8SIA5 15 B3GALT4(6), B4GALNT1(5), GLB1(9), HEXA(3), HEXB(4), LCT(30), SLC33A1(8), ST3GAL1(2), ST3GAL2(4), ST3GAL5(2), ST6GALNAC3(10), ST6GALNAC4(5), ST6GALNAC5(5), ST8SIA1(4), ST8SIA5(8) 5487440 105 36 104 34 34 41 12 7 11 0 0.66 0.91 446 HSA00910_NITROGEN_METABOLISM Genes involved in nitrogen metabolism AMT, ASNS, ASRGL1, CA1, CA12, CA13, CA14, CA2, CA3, CA4, CA5A, CA5B, CA6, CA7, CA8, CA9, CPS1, CTH, GLS, GLS2, GLUD1, GLUD2, GLUL, HAL 24 AMT(5), ASNS(9), ASRGL1(2), CA1(4), CA12(3), CA13(2), CA14(4), CA2(5), CA3(4), CA4(1), CA5A(5), CA5B(5), CA6(2), CA7(5), CA8(5), CA9(8), CPS1(24), CTH(5), GLS(10), GLS2(9), GLUD1(4), GLUD2(9), GLUL(6), HAL(6) 7353074 142 41 136 47 46 55 16 4 17 4 0.66 0.91 447 UCALPAINPATHWAY Calpains promote formation of integrin adhesion clusters which recruit Rac to enable the formation of mature focal adhesions that do not contain calpain. ACTA1, ACTN1, ACTN2, ACTN3, ARHA, CAPN1, CAPNS1, CAPNS2, ITGA1, ITGB1, ITGB3, PTK2, PXN, RAC1, SPTAN1, SRC, TLN1, VIL2 16 ACTA1(4), ACTN1(13), ACTN2(9), ACTN3(10), CAPN1(4), CAPNS1(3), CAPNS2(6), ITGA1(20), ITGB1(12), ITGB3(16), PTK2(11), PXN(6), SPTAN1(29), SRC(2), TLN1(28) 9938815 173 48 169 72 60 70 13 6 24 0 0.66 0.91 448 CXCR4PATHWAY CXCR4 is a G-protein coupled receptor that responds to the ligand SDF-1 by activating Ras and PI3 kinase to promote lymphocyte chemotaxis. BCAR1, CRK, CXCL12, CXCR4, GNAI1, GNAQ, GNB1, GNGT1, HRAS, MAP2K1, MAPK1, MAPK3, NFKB1, PIK3C2G, PIK3CA, PIK3R1, PLCG1, PRKCA, PRKCB1, PTK2, PTK2B, PXN, RAF1, RELA 20 CRK(1), CXCL12(3), CXCR4(1), GNAI1(4), GNB1(3), MAP2K1(2), MAPK1(2), MAPK3(4), NFKB1(12), PIK3C2G(22), PLCG1(12), PRKCA(10), PTK2(11), PTK2B(16), PXN(6), RAF1(7), RELA(6) 7968738 122 42 120 49 31 41 21 10 17 2 0.66 0.91 449 HSA00660_C5_BRANCHED_DIBASIC_ACID_METABOLISM Genes involved in C5-branched dibasic acid metabolism ILVBL, SUCLA2 2 ILVBL(7), SUCLA2(5) 754762 12 10 11 2 2 9 0 0 1 0 0.66 0.91 450 HSA00300_LYSINE_BIOSYNTHESIS Genes involved in lysine biosynthesis AADAT, AASDHPPT, AASS, KARS 4 AADAT(6), AASDHPPT(4), AASS(6), KARS(7) 1653641 23 16 22 10 7 7 6 2 1 0 0.67 0.91 451 CREMPATHWAY The transcription factor CREM activates a post-meiotic transcriptional cascade culminating in spermatogenesis. ADCY1, CREM, FHL5, FSHB, FSHR, GNAS, XPO1 7 ADCY1(17), CREM(5), FHL5(6), FSHR(17), GNAS(25), XPO1(15) 3133290 85 28 81 18 24 42 11 3 5 0 0.67 0.91 452 CCR3PATHWAY CCR3 is a G-protein coupled receptor that recruits eosinophils to inflammation sites via chemokine ligands. ARHA, CCL11, CCR3, CFL1, GNAQ, GNAS, GNB1, GNGT1, HRAS, LIMK1, MAP2K1, MAPK1, MAPK3, MYL2, NOX1, PIK3C2G, PLCB1, PPP1R12B, PRKCA, PRKCB1, PTK2, RAF1, ROCK2 21 CCR3(5), CFL1(1), GNAS(25), GNB1(3), LIMK1(7), MAP2K1(2), MAPK1(2), MAPK3(4), MYL2(1), NOX1(11), PIK3C2G(22), PLCB1(6), PPP1R12B(18), PRKCA(10), PTK2(11), RAF1(7), ROCK2(15) 8758155 150 44 147 41 40 52 21 8 25 4 0.67 0.91 453 NOTCHPATHWAY Proteolysis and Signaling Pathway of Notch ADAM17, DLL1, FURIN, NOTCH1, PSEN1, RBPSUH 4 ADAM17(11), DLL1(8), FURIN(5), PSEN1(4) 1751631 28 18 28 20 6 16 1 2 3 0 0.67 0.91 454 ST_G_ALPHA_S_PATHWAY The G-alpha-s protein activates adenylyl cyclases, which catalyze cAMP formation. ASAH1, BF, BFAR, BRAF, CAMP, CREB1, CREB3, CREB5, EPAC, GAS, GRF2, MAPK1, RAF1, SNX13, SRC, TERF2IP 12 ASAH1(9), BFAR(9), BRAF(12), CAMP(1), CREB1(5), CREB3(2), CREB5(6), MAPK1(2), RAF1(7), SNX13(12), SRC(2), TERF2IP(4) 3966205 71 30 71 14 11 28 14 6 12 0 0.67 0.91 455 TH1TH2PATHWAY Helper T subtype Th1 produces pro-inflammatory cytokines that stimulate phagocytosis, while Th2 cells promote antibody production and activate eosinophils. CD28, CD86, HLA-DRA, HLA-DRB1, IFNG, IFNGR1, IFNGR2, IL12A, IL12B, IL12RB1, IL12RB2, IL18, IL18R1, IL2, IL2RA, IL4, IL4R, TNFRSF5, TNFSF5 17 CD28(6), CD86(6), HLA-DRB1(1), IFNG(5), IFNGR1(6), IFNGR2(4), IL12A(7), IL12B(3), IL12RB1(16), IL12RB2(11), IL18(1), IL18R1(5), IL2(4), IL2RA(3), IL4R(6) 4512559 84 33 82 19 20 35 9 8 12 0 0.68 0.92 456 FXRPATHWAY The nuclear receptor transcription factors FXR and LXR are activated by cholesterol metabolites and regulate cholesterol homeostasis. FABP6, LDLR, NR0B2, NR1H3, NR1H4, RXRA 6 FABP6(3), LDLR(12), NR0B2(2), NR1H3(5), NR1H4(8), RXRA(1) 1845319 31 21 31 11 8 16 4 0 3 0 0.68 0.92 457 CDC25PATHWAY The protein phosphatase Cdc25 is phosphorylated by Chk1 and activates Cdc2 to stimulate eukaryotic cells into M phase. ATM, CDC2, CDC25A, CDC25B, CDC25C, CHEK1, MYT1, WEE1, YWHAH 7 CDC25A(9), CDC25B(3), CDC25C(8), CHEK1(4), WEE1(1), YWHAH(4) 2566621 29 20 26 6 6 10 3 0 10 0 0.68 0.92 458 VALINE_LEUCINE_AND_ISOLEUCINE_BIOSYNTHESIS BCAT1, IARS, LARS, LARS2, PDHA1, PDHA2, PDHB 7 BCAT1(9), IARS(13), LARS(23), LARS2(9), PDHA1(4), PDHA2(10), PDHB(7) 3562056 75 27 75 14 15 34 11 4 11 0 0.68 0.92 459 PORPHYRIN_AND_CHLOROPHYLL_METABOLISM ALAD, BLVRA, BLVRB, CP, CPOX, EPRS, FECH, GUSB, HCCS, HMBS, HMOX1, HMOX2, PPOX, UGT1A10, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, UGT1A6, UGT1A8, UGT1A9, UGT2B15, UGT2B4, UROD, UROS 26 ALAD(3), BLVRA(2), BLVRB(1), CP(12), CPOX(8), EPRS(11), FECH(5), GUSB(5), HCCS(2), HMBS(7), HMOX1(3), HMOX2(5), UGT1A1(6), UGT1A10(8), UGT1A3(4), UGT1A4(4), UGT1A5(7), UGT1A6(5), UGT1A7(9), UGT1A8(4), UGT1A9(4), UGT2B15(9), UGT2B4(10), UROD(2), UROS(3) 9137926 139 43 133 39 42 57 17 7 16 0 0.68 0.92 460 HSA00020_CITRATE_CYCLE Genes involved in citrate cycle (TCA cycle) ACLY, ACO1, ACO2, CLYBL, CS, DLD, DLST, FH, IDH1, IDH2, IDH3A, IDH3B, IDH3G, LOC283398, LOC441996, MDH1, MDH2, OGDH, OGDHL, PC, PCK1, PCK2, SDHA, SDHB, SDHC, SDHD, SUCLA2, SUCLG1, SUCLG2 26 ACLY(9), ACO1(13), ACO2(8), CLYBL(10), CS(5), DLD(7), DLST(10), FH(11), IDH1(4), IDH2(7), IDH3A(5), IDH3B(5), IDH3G(9), MDH1(2), MDH2(5), OGDH(11), OGDHL(18), PC(8), PCK1(15), PCK2(7), SDHA(12), SDHB(1), SDHC(6), SDHD(1), SUCLA2(5), SUCLG1(1) 10165387 195 51 188 76 49 91 26 11 18 0 0.69 0.92 461 NOS1PATHWAY Glutamate stimulates NMDA-mediates calcium influx, which promotes nitric oxide synthesis from arginine by neuronal nitric oxide synthase, activating guanylate cyclase. CALM1, CALM2, CALM3, DLG4, GRIN1, GRIN2A, GRIN2B, GRIN2C, GRIN2D, NOS1, PPP3CA, PPP3CB, PPP3CC, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, PRKCA, PRKCB1, SYT1 20 CALM2(3), CALM3(1), DLG4(13), GRIN1(5), GRIN2A(25), GRIN2B(23), GRIN2C(6), GRIN2D(8), NOS1(21), PPP3CA(4), PPP3CB(7), PPP3CC(6), PRKACB(2), PRKACG(6), PRKAR1A(4), PRKAR2A(4), PRKAR2B(5), PRKCA(10), SYT1(4) 8451279 157 46 152 68 34 70 31 6 16 0 0.69 0.92 462 HSA04710_CIRCADIAN_RHYTHM Genes involved in circadian rhythm ARNTL, BHLHB2, BHLHB3, CLOCK, CRY1, CRY2, CSNK1D, CSNK1E, NPAS2, NR1D1, PER1, PER2, PER3 11 ARNTL(12), CLOCK(11), CRY1(6), CRY2(4), CSNK1E(10), NPAS2(10), NR1D1(3), PER1(15), PER2(8), PER3(16) 5595468 95 35 91 27 28 33 14 3 15 2 0.69 0.92 463 ARAPPATHWAY ADP-ribosylation factors (ARFs), members of the Ras superfamily, regulate eukaryotic vesicular trafficking and activate phospholipase D's. ARF1, ARFGAP1, ARFGAP3, ARFGEF2, BIG1, CENTD1, CENTD2, CLTA, CLTB, COP, COPA, DDEF1, DDEF2, GBF1, GPLD1, KDELR1, KDELR2, KDELR3, PSCD1, PSCD2, PSCD3, PSCD4 12 ARF1(4), ARFGAP1(3), ARFGAP3(6), ARFGEF2(30), CLTA(1), CLTB(5), COPA(14), GBF1(23), GPLD1(10), KDELR1(3), KDELR2(2), KDELR3(4) 5507994 105 35 105 25 20 50 14 5 14 2 0.70 0.92 464 GLUTATHIONE_METABOLISM ANPEP, G6PD, GCLC, GCLM, GGT1, GPX1, GPX2, GPX3, GPX4, GPX5, GSS, GSTA1, GSTA2, GSTA3, GSTA4, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, GSTO2, GSTP1, GSTT1, GSTT2, GSTZ1, IDH1, IDH2, MGST1, MGST2, MGST3, PGD 29 ANPEP(13), G6PD(3), GCLC(8), GCLM(3), GGT1(10), GPX3(4), GPX5(7), GSS(5), GSTA1(5), GSTA2(6), GSTA3(3), GSTA4(3), GSTM1(3), GSTM2(1), GSTM3(4), GSTM4(2), GSTM5(2), GSTO2(2), GSTP1(2), GSTZ1(4), IDH1(4), IDH2(7), MGST1(3), MGST3(1), PGD(4) 6272794 109 40 104 41 41 36 14 11 5 2 0.70 0.92 465 DNAFRAGMENTPATHWAY DNA fragmentation during apoptosis is effected by DFF, a caspase-activated DNAse, and by endonuclease G. CASP3, CASP7, DFFA, DFFB, ENDOG, GZMB, HMGB1, HMGB2, TOP2A, TOP2B 9 CASP3(4), CASP7(4), DFFA(1), DFFB(3), GZMB(2), HMGB1(2), HMGB2(3), TOP2A(15), TOP2B(21) 3519275 55 27 55 21 5 17 13 7 13 0 0.70 0.92 466 MITOCHONDRIAL_FATTY_ACID_BETAOXIDATION ACADL, ACADM, ACADS, ACADVL, ACSL1, ACSL3, ACSL4, CPT1A, CPT2, DCI, EHHADH, HADHA, HADHSC, MGC5139, PECR, SCP2, SLC25A20 14 ACADL(7), ACADM(6), ACADS(5), ACADVL(6), ACSL1(13), ACSL3(10), CPT1A(10), CPT2(7), EHHADH(9), HADHA(7), PECR(5), SCP2(13), SLC25A20(5) 5312731 103 34 99 32 24 44 19 6 10 0 0.70 0.92 467 HSA00450_SELENOAMINO_ACID_METABOLISM Genes involved in selenoamino acid metabolism AHCY, CARM1, CBS, CTH, GGT1, GGTL3, GGTL4, HEMK1, KIAA0828, LCMT1, LCMT2, MARS, MARS2, MAT1A, MAT2B, METTL2B, METTL6, PAPSS1, PAPSS2, PRMT2, PRMT3, PRMT5, PRMT6, PRMT7, PRMT8, SCLY, SEPHS1, SEPHS2, WBSCR22 26 AHCY(4), CARM1(6), CBS(13), CTH(5), GGT1(10), HEMK1(2), LCMT1(4), LCMT2(13), MARS(12), MARS2(7), MAT1A(2), MAT2B(12), METTL2B(3), METTL6(2), PAPSS1(6), PAPSS2(6), PRMT3(10), PRMT5(11), PRMT6(6), PRMT7(4), PRMT8(9), SCLY(4), SEPHS1(13), SEPHS2(4), WBSCR22(9) 8352572 177 41 169 45 53 71 23 7 19 4 0.70 0.92 468 RARRXRPATHWAY RXR and RAR suppress transcription in the absence of ligand and, on binding trans- or 9-cis-retinoic acid, are ubiquitinated to allow transcription to proceed. ERCC3, GTF2A1, GTF2B, GTF2E1, GTF2F1, HDAC3, NCOA1, NCOA2, NCOA3, NCOR2, PCAF, POLR2A, RARA, RXRA, TBP 14 ERCC3(11), GTF2A1(5), GTF2B(5), GTF2E1(4), GTF2F1(6), HDAC3(10), NCOA1(17), NCOA2(16), NCOA3(8), NCOR2(24), POLR2A(25), RARA(3), RXRA(1), TBP(5) 8039721 140 41 137 55 27 68 23 7 15 0 0.70 0.92 469 HSA00460_CYANOAMINO_ACID_METABOLISM Genes involved in cyanoamino acid metabolism ASRGL1, GBA, GBA3, GGT1, GGTL3, GGTL4, SHMT1, SHMT2 6 ASRGL1(2), GBA(4), GBA3(9), GGT1(10), SHMT1(6), SHMT2(8) 1968643 39 20 36 13 12 14 4 1 6 2 0.70 0.92 470 GPCRDB_CLASS_B_SECRETIN_LIKE ADCYAP1R1, CALCR, CALCRL, CD97, CRHR1, CRHR2, ELTD1, EMR1, EMR2, GCGR, GHRHR, GIPR, GLP1R, GLP2R, GPR64, LPHN1, LPHN2, LPHN3, PTHR1, PTHR2, SCTR, VIPR1, VIPR2 20 ADCYAP1R1(7), CALCR(5), CALCRL(9), CD97(8), CRHR1(2), CRHR2(2), ELTD1(12), EMR1(22), EMR2(5), GHRHR(2), GIPR(4), GLP1R(8), GLP2R(17), GPR64(10), LPHN1(16), LPHN2(30), LPHN3(29), SCTR(4), VIPR1(3) 9426160 195 48 190 57 43 93 23 14 20 2 0.71 0.92 471 CK1PATHWAY Caseine kinase 1 (CK1) and cdk5 phosphorylate DARPP32 in the dopamine signaling pathway. CDK5, CDK5R1, CSNK1D, DRD1, DRD2, GRM1, PLCB1, PPP1CA, PPP1R1B, PPP2CA, PPP3CA, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B 16 CDK5(1), CDK5R1(5), DRD1(6), DRD2(10), GRM1(22), PLCB1(6), PPP1CA(6), PPP1R1B(4), PPP2CA(6), PPP3CA(4), PRKACB(2), PRKACG(6), PRKAR1A(4), PRKAR2A(4), PRKAR2B(5) 5302454 91 33 89 36 24 38 13 4 12 0 0.71 0.92 472 FEEDERPATHWAY Sugars such as mannose, galactose, and fructose are enzymatically converted to glucose via feeder pathways that lead to glycolysis. HK1, KHK, LCT, MPI, PGM1, PYGL, PYGM, TPI1, TREH 9 HK1(13), KHK(1), LCT(30), MPI(5), PGM1(9), PYGL(9), PYGM(10), TPI1(1), TREH(4) 4675557 82 30 82 33 19 36 11 8 8 0 0.71 0.92 473 GLYCEROPHOSPHOLIPID_METABOLISM ACHE, AGPAT1, AGPAT2, AGPAT3, AGPAT4, AGPS, CDIPT, CDS1, CDS2, CHAT, CHKA, CHKB, CHKB, CPT1B, CLC, DGKA, DGKB, DGKD, DGKE, DGKG, DGKH, DGKQ, DGKZ, ETNK1, GNPAT, GPD1, GPD2, LCAT, LGALS13, LYPLA1, LYPLA2, LYPLA2, LYPLA2P1, LOC388499, LYPLA3, PAFAH1B1, PAFAH2, PCYT1A, PCYT1B, PEMT, PISD, PLA2G1B, PLA2G2A, PLA2G2E, PLA2G3, PLA2G4A, PLA2G5, PLA2G6, PLCB2, PLCG1, PLCG2, PPAP2A, PPAP2B, PPAP2C 47 ACHE(4), AGPAT1(2), AGPAT2(1), AGPAT3(6), AGPAT4(4), AGPS(10), CDIPT(1), CDS1(3), CDS2(2), CHAT(1), CHKA(8), DGKA(15), DGKB(17), DGKD(21), DGKE(4), DGKG(13), DGKH(11), DGKZ(9), ETNK1(9), GNPAT(11), GPD1(6), GPD2(5), LCAT(2), LGALS13(2), LYPLA1(2), LYPLA2(5), PAFAH1B1(1), PAFAH2(6), PCYT1A(7), PCYT1B(4), PEMT(2), PISD(5), PLA2G1B(1), PLA2G2E(3), PLA2G3(5), PLA2G4A(11), PLA2G5(2), PLA2G6(6), PLCB2(9), PLCG1(12), PLCG2(27), PPAP2A(4), PPAP2B(3) 16172413 282 62 278 93 74 108 44 21 31 4 0.71 0.92 474 SODDPATHWAY Some members of the tumor necrosis factor receptor family have cytoplasmic death domains that promote apoptosis when active and are repressed by silencers called SODDs. BAG4, BIRC3, CASP8, FADD, RIPK1, TNF, TNFRSF1A, TNFRSF1B, TRADD, TRAF2 8 BAG4(4), BIRC3(3), FADD(1), RIPK1(8), TNF(1), TNFRSF1A(6), TNFRSF1B(3), TRAF2(5) 2309696 31 19 31 9 6 11 5 3 6 0 0.72 0.92 475 GLYOXYLATE_AND_DICARBOXYLATE_METABOLISM ACO1, ACO2, CS, GRHPR, HAO1, HAO2, HYI, MDH1, MDH2, MTHFD1, MTHFD1L, MTHFD2 12 ACO1(13), ACO2(8), CS(5), GRHPR(4), HAO1(2), HAO2(7), HYI(2), MDH1(2), MDH2(5), MTHFD1(6), MTHFD1L(12), MTHFD2(3) 4485313 69 33 68 28 24 26 9 5 5 0 0.72 0.92 476 NUCLEOTIDE_GPCRS ADORA1, ADORA2A, ADORA2B, ADORA3, GPR23, LTB4R, P2RY1, P2RY2, P2RY5, P2RY6 8 ADORA1(6), ADORA2A(5), ADORA2B(2), ADORA3(5), LTB4R(3), P2RY1(2), P2RY2(6), P2RY6(3) 2001147 32 21 32 14 9 9 10 4 0 0 0.72 0.92 477 CASPASEPATHWAY Caspases are cysteine proteases active in apoptosis; caspase-8 and 9 cleave and activate other caspases, while 3, 6, and 7 cleave cellular targets. ADPRT, APAF1, ARHGDIB, BIRC2, BIRC3, BIRC4, CASP1, CASP10, CASP2, CASP3, CASP4, CASP6, CASP7, CASP8, CASP9, CYCS, DFFA, DFFB, GZMB, LMNA, LMNB1, LMNB2, PRF1 19 APAF1(19), ARHGDIB(2), BIRC2(13), BIRC3(3), CASP1(7), CASP10(10), CASP2(9), CASP3(4), CASP4(8), CASP6(4), CASP7(4), CASP9(3), CYCS(3), DFFA(1), DFFB(3), GZMB(2), LMNA(8), LMNB1(5), PRF1(8) 6020888 116 35 111 34 35 42 16 4 19 0 0.72 0.92 478 TUBBYPATHWAY Tubby is activated by phospholipase C activity and hydrolysis of PIP2, after which it enters the nucleus and regulates transcription. CHRM1, GNAQ, GNB1, GNGT1, HTR2C, PLCB1, TUB 6 CHRM1(6), GNB1(3), PLCB1(6), TUB(12) 2144786 27 19 27 10 9 11 5 0 2 0 0.72 0.92 479 CELL2CELLPATHWAY Epithelial cell adhesion proteins such as cadherins transduce signals into the cell via catenins, which alter cell shape and motility. ACTN1, ACTN2, ACTN3, BCAR1, CSK, CTNNA1, CTNNA2, CTNNB1, PECAM1, PTK2, PXN, SRC, VCL 11 ACTN1(13), ACTN2(9), ACTN3(10), CSK(1), CTNNA1(18), CTNNA2(13), PTK2(11), PXN(6), SRC(2), VCL(14) 6059606 97 36 92 43 32 36 9 2 18 0 0.72 0.92 480 METPATHWAY The hepatocyte growth factor receptor c-Met stimulates proliferation and alters cell motility and adhesion on binding the ligand HGF. ACTA1, CRK, CRKL, DOCK1, ELK1, FOS, GAB1, GRB2, GRF2, HGF, HRAS, ITGA1, ITGB1, JUN, MAP2K1, MAP2K2, MAP4K1, MAPK1, MAPK3, MAPK8, MET, PAK1, PIK3CA, PIK3R1, PTEN, PTK2, PTK2B, PTPN11, PXN, RAF1, RAP1A, RAP1B, RASA1, SOS1, SRC, STAT3 30 ACTA1(4), CRK(1), CRKL(5), DOCK1(32), ELK1(2), FOS(6), GAB1(10), GRB2(3), HGF(15), ITGA1(20), ITGB1(12), JUN(1), MAP2K1(2), MAP4K1(13), MAPK1(2), MAPK3(4), MAPK8(7), MET(10), PAK1(3), PTK2(11), PTK2B(16), PTPN11(8), PXN(6), RAF1(7), RAP1A(3), RAP1B(2), SOS1(21), SRC(2), STAT3(12) 13119427 240 60 234 74 61 103 32 10 32 2 0.72 0.92 481 SA_FAS_SIGNALING The TNF-type receptor Fas induces apoptosis on ligand binding. BCL2, CASP3, CASP8, CFL1, CFLAR, P11, PDE6D, TNFRSF6, TNFSF6 5 CASP3(4), CFL1(1), CFLAR(7), PDE6D(1) 884539 13 11 13 4 2 7 2 1 1 0 0.72 0.92 482 HSA00340_HISTIDINE_METABOLISM Genes involved in histidine metabolism ABP1, ACY3, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH3B1, ALDH3B2, ALDH7A1, ALDH9A1, AMDHD1, AOC2, AOC3, ASPA, CARM1, CNDP1, DDC, FTCD, HAL, HARS, HARS2, HDC, HEMK1, HNMT, LCMT1, LCMT2, MAOA, MAOB, METTL2B, METTL6, PRMT2, PRMT3, PRMT5, PRMT6, PRMT7, PRMT8, PRPS1, PRPS2, UROC1, WBSCR22 40 ABP1(12), ACY3(4), ALDH1B1(7), ALDH2(2), ALDH3A1(6), ALDH3A2(2), ALDH3B1(5), ALDH3B2(8), ALDH7A1(2), ALDH9A1(4), AMDHD1(9), AOC2(6), AOC3(14), ASPA(5), CARM1(6), CNDP1(6), DDC(11), HAL(6), HARS(4), HARS2(8), HDC(10), HEMK1(2), HNMT(5), LCMT1(4), LCMT2(13), MAOA(14), MAOB(7), METTL2B(3), METTL6(2), PRMT3(10), PRMT5(11), PRMT6(6), PRMT7(4), PRMT8(9), PRPS1(3), PRPS2(10), UROC1(14), WBSCR22(9) 13349823 263 53 257 73 72 99 37 15 36 4 0.72 0.92 483 ARFPATHWAY Cyclin-dependent kinase inhibitor 2A is a tumor suppressor that induces G1 arrest and can activate the p53 pathway, leading to G2/M arrest. ABL1, CDKN2A, E2F1, MDM2, MYC, PIK3CA, PIK3R1, POLR1A, POLR1B, POLR1C, POLR1D, RAC1, RB1, TBX2, TP53, TWIST1 10 ABL1(9), CDKN2A(1), MDM2(6), MYC(7), POLR1A(15), POLR1B(16), POLR1C(4), POLR1D(2), TBX2(4) 4470734 64 31 63 36 18 26 5 7 8 0 0.72 0.92 484 SIG_PIP3_SIGNALING_IN_B_LYMPHOCYTES Genes related to PIP3 signaling in B lymphocytes AKT1, AKT2, AKT3, BCR, BTK, CD19, CDKN2A, DAPP1, FLOT1, FLOT2, FOXO3A, GAB1, ITPR1, ITPR2, ITPR3, LYN, NR0B2, P101-PI3K, PDK1, PHF11, PIK3CA, PITX2, PLCG2, PPP1R13B, PREX1, PSCD3, PTEN, PTPRC, RPS6KA1, RPS6KA2, RPS6KA3, RPS6KB1, SAG, SYK, TEC, VAV1 30 AKT1(8), AKT2(4), AKT3(8), BCR(6), BTK(11), CD19(7), CDKN2A(1), DAPP1(7), FLOT1(1), FLOT2(3), GAB1(10), ITPR1(31), ITPR2(38), ITPR3(23), LYN(7), NR0B2(2), PDK1(7), PHF11(4), PLCG2(27), PPP1R13B(7), PREX1(25), PTPRC(15), RPS6KA1(5), RPS6KA2(16), RPS6KA3(17), RPS6KB1(3), SAG(5), SYK(6), TEC(5), VAV1(16) 18132213 325 67 314 117 78 143 42 16 42 4 0.72 0.92 485 FASPATHWAY Binding of the Fas ligand to the Fas receptor induces caspase activation and consequent apoptosis in the Fas-expressing cell. ADPRT, ARHGDIB, CASP10, CASP3, CASP6, CASP7, CASP8, CFLAR, DAXX, DFFA, DFFB, FADD, FAF1, JUN, LMNA, LMNB1, LMNB2, MAP2K4, MAP3K1, MAP3K7, MAPK8, PAK1, PAK2, PRKDC, PTPN13, RB1, RIPK2, SPTAN1, TNFRSF6, TNFSF6 23 ARHGDIB(2), CASP10(10), CASP3(4), CASP6(4), CASP7(4), CFLAR(7), DAXX(11), DFFA(1), DFFB(3), FADD(1), FAF1(8), JUN(1), LMNA(8), LMNB1(5), MAP2K4(6), MAP3K7(8), MAPK8(7), PAK1(3), PAK2(6), PRKDC(70), PTPN13(27), RIPK2(7), SPTAN1(29) 12602470 232 53 228 51 58 86 35 15 33 5 0.73 0.92 486 HSA00510_N_GLYCAN_BIOSYNTHESIS Genes involved in N-glycan biosynthesis ALG1, ALG10, ALG10B, ALG11, ALG12, ALG13, ALG14, ALG2, ALG3, ALG5, ALG6, ALG8, ALG9, B4GALT1, B4GALT2, B4GALT3, DAD1, DDOST, DHDDS, DOLPP1, DPAGT1, DPM1, FUT8, GANAB, GCS1, MAN1A1, MAN1A2, MAN1B1, MAN1C1, MAN2A1, MGAT1, MGAT2, MGAT3, MGAT4A, MGAT4B, MGAT5, MGAT5B, RFT1, RPN1, RPN2, ST6GAL1, STT3B 41 ALG1(2), ALG10(9), ALG10B(8), ALG11(6), ALG12(1), ALG13(17), ALG14(2), ALG2(2), ALG3(5), ALG5(4), ALG6(5), ALG8(8), ALG9(6), B4GALT1(2), B4GALT2(5), B4GALT3(8), DAD1(1), DDOST(3), DHDDS(8), DOLPP1(1), DPAGT1(4), DPM1(2), FUT8(13), GANAB(13), MAN1A1(11), MAN1A2(9), MAN1B1(4), MAN1C1(7), MAN2A1(23), MGAT1(3), MGAT2(2), MGAT3(4), MGAT4A(4), MGAT4B(7), MGAT5(9), MGAT5B(7), RFT1(6), RPN1(6), RPN2(9), ST6GAL1(10), STT3B(6) 14360076 262 58 245 64 65 109 41 9 34 4 0.73 0.92 487 HSA00472_D_ARGININE_AND_D_ORNITHINE_METABOLISM Genes involved in D-arginine and D-ornithine metabolism DAO 1 DAO(5) 259076 5 3 5 2 1 3 0 1 0 0 0.73 0.92 488 RANPATHWAY RanGEF (aka RCC1) and RanGFP regulate the GTP- or GDP-bound state of Ran, creating a Ran gradient across the nuclear membrane that is used in nuclear import. CHC1, RAN, RANBP1, RANBP2, RANGAP1 4 RAN(1), RANBP2(37), RANGAP1(5) 2882340 43 23 43 7 9 14 9 1 10 0 0.73 0.92 489 KERATAN_SULFATE_BIOSYNTHESIS B3GNT1, B4GALT1, B4GALT2, B4GALT3, B4GALT5, FUT8, SIAT4A, SIAT4B, SIAT6, ST3GAL1, ST3GAL2, ST3GAL3, ST3GAL4 10 B3GNT1(7), B4GALT1(2), B4GALT2(5), B4GALT3(8), B4GALT5(2), FUT8(13), ST3GAL1(2), ST3GAL2(4), ST3GAL3(6), ST3GAL4(4) 2606056 53 25 48 17 15 25 9 0 4 0 0.73 0.92 490 PROTEASOMEPATHWAY Ubiquitinated proteins are targeted for proteolytic degradation by the proteasome, where they are unfolded and degraded to small peptides in an ATP-dependent process. PSMA1, PSMA2, PSMA3, PSMA4, PSMA5, PSMA6, PSMA7, PSMB1, PSMB2, PSMB3, PSMB4, PSMB5, PSMB6, PSMB7, PSMC3, PSMD14, RPN1, RPN2, UBE1, UBE2A, UBE3A 20 PSMA1(5), PSMA2(5), PSMA3(5), PSMA4(2), PSMA5(1), PSMA6(2), PSMB1(2), PSMB2(2), PSMB3(4), PSMB4(3), PSMB5(4), PSMB6(3), PSMB7(1), PSMC3(1), PSMD14(3), RPN1(6), RPN2(9), UBE2A(4), UBE3A(13) 4635883 75 30 71 24 14 32 11 3 15 0 0.74 0.92 491 HSA00860_PORPHYRIN_AND_CHLOROPHYLL_METABOLISM Genes involved in porphyrin and chlorophyll metabolism ALAD, ALAS1, ALAS2, BLVRA, BLVRB, COX10, COX15, CP, CPOX, EARS2, EPRS, FECH, FTH1, FTMT, GUSB, HCCS, HMBS, HMOX1, HMOX2, MMAB, PPOX, UGT1A1, UGT1A10, UGT1A3, UGT1A4, UGT1A5, UGT1A6, UGT1A7, UGT1A8, UGT1A9, UGT2A1, UGT2A3, UGT2B10, UGT2B11, UGT2B15, UGT2B17, UGT2B28, UGT2B4, UGT2B7, UROD, UROS 41 ALAD(3), ALAS1(12), ALAS2(11), BLVRA(2), BLVRB(1), COX10(5), COX15(4), CP(12), CPOX(8), EARS2(4), EPRS(11), FECH(5), FTH1(2), FTMT(7), GUSB(5), HCCS(2), HMBS(7), HMOX1(3), HMOX2(5), MMAB(2), UGT1A1(6), UGT1A10(8), UGT1A3(4), UGT1A4(4), UGT1A5(7), UGT1A6(5), UGT1A7(9), UGT1A8(4), UGT1A9(4), UGT2A1(9), UGT2A3(5), UGT2B10(14), UGT2B11(22), UGT2B15(9), UGT2B17(4), UGT2B28(14), UGT2B4(10), UGT2B7(10), UROD(2), UROS(3) 13992494 264 53 254 65 79 107 38 13 27 0 0.74 0.92 492 LYSINE_BIOSYNTHESIS AADAT, AASDH, AASDHPPT, AASS, KARS 5 AADAT(6), AASDH(11), AASDHPPT(4), AASS(6), KARS(7) 2455008 34 22 33 16 12 9 8 2 3 0 0.74 0.92 493 BETA_ALANINE_METABOLISM ABAT, ABP1, ACADL, ACADM, ACADSB, ALDH1A1, ALDH1A2, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH9A1, AOC2, AOC3, CNDP1, DPYD, DPYS, ECHS1, EHHADH, GAD1, GAD2, HADHA, MLYCD, SDS, SMS, UPB1 27 ABAT(9), ABP1(12), ACADL(7), ACADM(6), ACADSB(4), ALDH1A1(6), ALDH1A2(9), ALDH1B1(7), ALDH2(2), ALDH3A1(6), ALDH3A2(2), ALDH9A1(4), AOC2(6), AOC3(14), CNDP1(6), DPYD(16), DPYS(3), ECHS1(3), EHHADH(9), GAD1(8), GAD2(12), HADHA(7), MLYCD(5), SDS(3), SMS(8), UPB1(9) 10047799 183 49 178 64 52 63 29 15 24 0 0.74 0.92 494 HSA04370_VEGF_SIGNALING_PATHWAY Genes involved in VEGF signaling pathway AKT1, AKT2, AKT3, BAD, CASP9, CDC42, CHP, HRAS, KDR, KRAS, MAP2K1, MAP2K2, MAPK1, MAPK11, MAPK12, MAPK13, MAPK14, MAPK3, MAPKAPK2, MAPKAPK3, NFAT5, NFATC1, NFATC2, NFATC3, NFATC4, NOS3, NRAS, PIK3CA, PIK3CB, PIK3CD, PIK3CG, PIK3R1, PIK3R2, PIK3R3, PIK3R5, PLA2G10, PLA2G12A, PLA2G12B, PLA2G1B, PLA2G2A, PLA2G2D, PLA2G2E, PLA2G2F, PLA2G3, PLA2G4A, PLA2G5, PLA2G6, PLCG1, PLCG2, PPP3CA, PPP3CB, PPP3CC, PPP3R1, PPP3R2, PRKCA, PRKCB1, PRKCG, PTGS2, PTK2, PXN, RAC1, RAC2, RAC3, RAF1, SH2D2A, SHC2, SPHK1, SPHK2, SRC, VEGFA 60 AKT1(8), AKT2(4), AKT3(8), BAD(2), CASP9(3), CDC42(5), KDR(23), MAP2K1(2), MAPK1(2), MAPK13(2), MAPK14(6), MAPK3(4), MAPKAPK2(6), MAPKAPK3(4), NFAT5(13), NFATC2(15), NFATC3(12), NFATC4(8), NOS3(11), PIK3CB(19), PIK3CD(10), PIK3CG(25), PIK3R2(4), PIK3R3(8), PIK3R5(8), PLA2G10(1), PLA2G12A(1), PLA2G12B(3), PLA2G1B(1), PLA2G2D(2), PLA2G2E(3), PLA2G2F(3), PLA2G3(5), PLA2G4A(11), PLA2G5(2), PLA2G6(6), PLCG1(12), PLCG2(27), PPP3CA(4), PPP3CB(7), PPP3CC(6), PPP3R1(2), PPP3R2(1), PRKCA(10), PRKCG(10), PTGS2(7), PTK2(11), PXN(6), RAC2(2), RAF1(7), SPHK1(2), SPHK2(1), SRC(2), VEGFA(1) 21132619 368 71 361 127 105 143 48 23 49 0 0.74 0.92 495 HSA00051_FRUCTOSE_AND_MANNOSE_METABOLISM Genes involved in fructose and mannose metabolism AKR1B1, AKR1B10, ALDOA, ALDOB, ALDOC, FBP1, FBP2, FPGT, FUK, GMDS, GMPPA, GMPPB, HK1, HK2, HK3, HSD3B7, KHK, LHPP, MPI, MTMR1, MTMR2, MTMR6, PFKFB1, PFKFB2, PFKFB3, PFKFB4, PFKL, PFKM, PFKP, PGM2, PHPT1, PMM1, PMM2, RDH11, RDH12, RDH13, RDH14, SORD, TPI1, TSTA3, UGCGL1, UGCGL2 39 AKR1B1(2), AKR1B10(4), ALDOA(6), ALDOB(9), ALDOC(4), FBP1(4), FPGT(5), FUK(8), GMDS(3), GMPPA(9), GMPPB(3), HK1(13), HK2(8), HK3(12), HSD3B7(3), KHK(1), LHPP(2), MPI(5), MTMR1(16), MTMR2(4), MTMR6(8), PFKFB1(9), PFKFB2(1), PFKFB3(7), PFKFB4(4), PFKM(7), PFKP(11), PGM2(6), PHPT1(2), PMM1(1), PMM2(6), RDH11(3), RDH12(6), RDH13(5), RDH14(3), SORD(3), TPI1(1), TSTA3(4) 12021700 208 55 202 71 56 86 25 14 25 2 0.74 0.92 496 HSA00030_PENTOSE_PHOSPHATE_PATHWAY Genes involved in pentose phosphate pathway ALDOA, ALDOB, ALDOC, DERA, FBP1, FBP2, G6PD, GPI, H6PD, PFKL, PFKM, PFKP, PGD, PGLS, PGM1, PGM3, PRPS1, PRPS1L1, PRPS2, RBKS, RPE, RPIA, TALDO1, TKT, TKTL1, TKTL2 25 ALDOA(6), ALDOB(9), ALDOC(4), DERA(9), FBP1(4), G6PD(3), GPI(9), H6PD(5), PFKM(7), PFKP(11), PGD(4), PGLS(1), PGM1(9), PGM3(6), PRPS1(3), PRPS1L1(5), PRPS2(10), RBKS(1), RPE(3), RPIA(7), TALDO1(6), TKT(7), TKTL1(10), TKTL2(12) 7865729 151 45 143 50 40 67 17 8 17 2 0.75 0.92 497 CACAMPATHWAY Calcium functions as a second messenger activating the calcium/calmodulin-dependent kinases, which phosphorylate targets such as CREB. CALM1, CALM2, CALM3, CAMK1, CAMK1G, CAMK2A, CAMK2B, CAMK2D, CAMK2G, CAMK4, CAMKK1, CAMKK2, CREB1, SYT1 14 CALM2(3), CALM3(1), CAMK1(9), CAMK1G(5), CAMK2A(8), CAMK2B(2), CAMK2D(7), CAMK2G(8), CAMK4(5), CAMKK1(8), CAMKK2(6), CREB1(5), SYT1(4) 3825434 71 30 69 11 16 31 7 4 13 0 0.75 0.92 498 HSA00100_BIOSYNTHESIS_OF_STEROIDS Genes involved in biosynthesis of steroids CYP27B1, CYP51A1, DHCR24, DHCR7, EBP, FDFT1, FDPS, GGCX, GGPS1, HMGCR, HSD17B7, IDI1, IDI2, LSS, MVD, MVK, NQO1, NSDHL, PMVK, SC4MOL, SC5DL, SQLE, TM7SF2, VKORC1 24 CYP27B1(9), CYP51A1(4), DHCR24(6), DHCR7(4), FDFT1(3), FDPS(7), GGCX(10), GGPS1(2), HMGCR(15), HSD17B7(4), IDI1(4), IDI2(2), MVD(3), MVK(7), NQO1(3), NSDHL(9), PMVK(2), SC4MOL(3), SC5DL(3), SQLE(6), TM7SF2(3), VKORC1(3) 6305059 112 34 111 49 31 42 17 8 14 0 0.75 0.92 499 1_AND_2_METHYLNAPHTHALENE_DEGRADATION ADH1A, ADH1A, ADH1B, ADH1C, ADH1B, ADH1C, ADH4, ADH6, ADH7, ADHFE1 7 ADH1A(2), ADH1B(6), ADH1C(7), ADH4(5), ADH6(9), ADH7(6), ADHFE1(7) 2015487 42 21 41 7 11 15 10 0 6 0 0.75 0.92 500 N_GLYCAN_BIOSYNTHESIS ALG3, ALG5, B4GALT1, B4GALT2, B4GALT3, B4GALT5, DDOST, DPAGT1, DPM1, FUT8, GCS1, MAN1A1, MAN1B1, MGAT1, MGAT2, MGAT3, MGAT4A, MGAT4B, MGAT5, RPN1, RPN2, ST6GAL1 21 ALG3(5), ALG5(4), B4GALT1(2), B4GALT2(5), B4GALT3(8), B4GALT5(2), DDOST(3), DPAGT1(4), DPM1(2), FUT8(13), MAN1A1(11), MAN1B1(4), MGAT1(3), MGAT2(2), MGAT3(4), MGAT4A(4), MGAT4B(7), MGAT5(9), RPN1(6), RPN2(9), ST6GAL1(10) 6557682 117 37 109 31 36 46 20 2 13 0 0.76 0.92 501 SA_G1_AND_S_PHASES Cdk2, 4, and 6 bind cyclin D in G1, while cdk2/cyclin E promotes the G1/S transition. ARF1, ARF3, CCND1, CDK2, CDK4, CDKN1A, CDKN1B, CDKN2A, CFL1, E2F1, E2F2, MDM2, NXT1, PRB1, TP53 12 ARF1(4), ARF3(2), CDK2(5), CDK4(4), CDKN1A(1), CDKN1B(5), CDKN2A(1), CFL1(1), E2F2(1), MDM2(6), PRB1(4) 2112760 34 19 34 15 6 13 9 3 3 0 0.76 0.92 502 HSA00900_TERPENOID_BIOSYNTHESIS Genes involved in terpenoid biosynthesis FDFT1, FDPS, GGPS1, IDI1, IDI2, SQLE 6 FDFT1(3), FDPS(7), GGPS1(2), IDI1(4), IDI2(2), SQLE(6) 1516694 24 16 24 10 6 8 5 3 2 0 0.76 0.92 503 HSA00010_GLYCOLYSIS_AND_GLUCONEOGENESIS Genes involved in glycolysis and gluconeogenesis ACSS1, ACSS2, ACYP1, ACYP2, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, ADHFE1, AKR1A1, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH3B1, ALDH3B2, ALDH7A1, ALDH9A1, ALDOA, ALDOB, ALDOC, BPGM, DLAT, DLD, ENO1, ENO2, ENO3, FBP1, FBP2, G6PC, G6PC2, GALM, GAPDH, GAPDHS, GCK, GPI, HK1, HK2, HK3, LDHA, LDHAL6A, LDHAL6B, LDHB, LDHC, PDHA1, PDHA2, PDHB, PFKL, PFKM, PFKP, PGAM1, PGAM2, PGAM4, PGK1, PGK2, PGM1, PGM3, PKLR, PKM2, TPI1 62 ACSS1(4), ACSS2(11), ACYP1(2), ADH1A(2), ADH1B(6), ADH1C(7), ADH4(5), ADH5(3), ADH6(9), ADH7(6), ADHFE1(7), AKR1A1(1), ALDH1B1(7), ALDH2(2), ALDH3A1(6), ALDH3A2(2), ALDH3B1(5), ALDH3B2(8), ALDH7A1(2), ALDH9A1(4), ALDOA(6), ALDOB(9), ALDOC(4), BPGM(2), DLAT(2), DLD(7), ENO1(5), ENO2(3), ENO3(4), FBP1(4), G6PC(6), G6PC2(9), GAPDH(2), GAPDHS(10), GCK(5), GPI(9), HK1(13), HK2(8), HK3(12), LDHA(6), LDHAL6A(8), LDHAL6B(2), LDHB(2), LDHC(3), PDHA1(4), PDHA2(10), PDHB(7), PFKM(7), PFKP(11), PGAM1(2), PGAM2(2), PGK1(6), PGK2(5), PGM1(9), PGM3(6), PKLR(10), PKM2(5), TPI1(1) 19211776 325 62 318 106 97 131 42 20 31 4 0.76 0.92 504 NITROGEN_METABOLISM AMT, ASNS, CA1, CA12, CA14, CA2, CA3, CA4, CA5A, CA5B, CA6, CA7, CA8, CA9, CPS1, CTH, GLS, GLS2, GLUD1, GLUL, HAL 21 AMT(5), ASNS(9), CA1(4), CA12(3), CA14(4), CA2(5), CA3(4), CA4(1), CA5A(5), CA5B(5), CA6(2), CA7(5), CA8(5), CA9(8), CPS1(24), CTH(5), GLS(10), GLS2(9), GLUD1(4), GLUL(6), HAL(6) 6613130 129 39 123 36 42 47 15 4 17 4 0.76 0.92 505 HSA03010_RIBOSOME Genes involved in ribosome C15orf15, FAU, hCG_1644323, hCG_1984468, hCG_2041321, hCG_21078, hCG_26523, LOC283412, LOC284064, LOC284230, LOC284288, LOC284393, LOC285053, LOC342994, LOC347292, LOC388720, LOC389342, LOC390876, LOC391656, LOC400652, LOC402057, LOC439992, LOC440055, LOC440589, LOC440733, LOC440737, LOC441377, LOC441876, LOC441907, MRPL13, MRPS7, RPL10A, RPL10L, RPL11, RPL12, RPL13, RPL13A, RPL14, RPL18, RPL18A, RPL19, RPL21, RPL22L1, RPL23A, RPL23AP2, RPL24, RPL26, RPL27, RPL27A, RPL28, RPL29, RPL3, RPL30, RPL31, RPL32, RPL34, RPL35, RPL35A, RPL36A, RPL36AL, RPL37, RPL37A, RPL38, RPL39, RPL3L, RPL41, RPL6, RPL7, RPL8, RPL9, RPS10, RPS11, RPS12, RPS13, RPS15A, RPS16, RPS18, RPS2, RPS20, RPS21, RPS23, RPS24, RPS25, RPS26, RPS26P10, RPS27, RPS28, RPS29, RPS3, RPS3A, RPS4Y1, RPS5, RPS6, RPS7, RPS8, RPS9, RPSA, tcag7.23 64 FAU(1), MRPS7(6), RPL10A(1), RPL10L(8), RPL11(4), RPL12(1), RPL14(2), RPL18(4), RPL18A(4), RPL19(4), RPL21(2), RPL22L1(3), RPL23A(3), RPL24(3), RPL27(1), RPL27A(1), RPL28(2), RPL29(3), RPL3(5), RPL30(2), RPL31(1), RPL35(1), RPL35A(2), RPL36A(1), RPL36AL(1), RPL37(3), RPL38(1), RPL3L(3), RPL6(2), RPL7(2), RPL8(1), RPL9(1), RPS10(2), RPS12(3), RPS13(1), RPS15A(1), RPS18(4), RPS20(3), RPS21(2), RPS24(4), RPS25(1), RPS27(2), RPS29(2), RPS3(2), RPS3A(2), RPS5(1), RPS6(6), RPS7(3), RPS8(5), RPS9(1), RPSA(1) 7470184 125 40 122 38 28 61 21 2 13 0 0.76 0.92 506 RBPATHWAY The ATM protein kinase recognizes DNA damage and blocks cell cycle progression by phosphorylating chk1 and p53, which normally inhibits Rb to allow G1/S transitions. ATM, CDC2, CDC25A, CDC25B, CDC25C, CDK2, CDK4, CHEK1, MYT1, RB1, TP53, WEE1, YWHAH 9 CDC25A(9), CDC25B(3), CDC25C(8), CDK2(5), CDK4(4), CHEK1(4), WEE1(1), YWHAH(4) 3012356 38 22 35 9 7 14 6 1 10 0 0.76 0.92 507 SALMONELLAPATHWAY Salmonella induces membrane ruffling in infected cells via bacterial proteins including SipA, SipC, and SopE, which alter actin structure. ACTA1, ACTR2, ACTR3, ARPC1A, ARPC1B, ARPC2, ARPC3, ARPC4, CDC42, RAC1, WASF1, WASL 12 ACTA1(4), ACTR2(7), ACTR3(3), ARPC1A(7), ARPC1B(3), ARPC2(2), ARPC3(2), CDC42(5), WASF1(3), WASL(8) 2884252 44 23 44 13 15 18 2 0 9 0 0.76 0.92 508 SA_MMP_CYTOKINE_CONNECTION Cytokines can induce activation of matrix metalloproteinases, which degrade extracellular matrix. ACE, CD44, CSF1, FCGR3A, IL1B, IL6R, SELL, SPN, TGFB1, TGFB2, TNF, TNFRSF1A, TNFRSF1B, TNFRSF8, TNFSF8 15 ACE(14), CD44(12), CSF1(5), FCGR3A(2), IL1B(2), IL6R(12), SELL(4), SPN(4), TGFB1(4), TGFB2(6), TNF(1), TNFRSF1A(6), TNFRSF1B(3), TNFRSF8(8), TNFSF8(1) 4599794 84 30 81 21 26 28 16 4 10 0 0.76 0.92 509 TSP1PATHWAY Thrombospondin-1 (TSP-1) inhibits angiogenesis by inducing caspase-dependent apoptosis in microvascular endothelial cells. CASP3, CD36, FOS, FYN, JUN, MAPK14, THBS1 7 CASP3(4), CD36(7), FOS(6), FYN(7), JUN(1), MAPK14(6), THBS1(12) 2603188 43 22 43 11 12 18 4 4 5 0 0.76 0.92 510 TERCPATHWAY hTERC, the RNA subunit of telomerase, and hTERT, the catalytic protein subunit, are required for telomerase activity and are overexpressed in many cancers. NFYA, NFYB, NFYC, RB1, SP1, SP3 5 NFYA(7), NFYB(2), NFYC(1), SP1(6), SP3(12) 1727970 28 18 26 8 2 14 7 1 4 0 0.77 0.92 511 HSA00632_BENZOATE_DEGRADATION_VIA_COA_LIGATION Genes involved in benzoate degradation via CoA ligation ACAT1, ACAT2, ACOT11, ACYP1, ACYP2, ARD1A, CARKL, DHRS1, DHRS2, DHRS3, DHRS7, DHRSX, ECHS1, EHHADH, ESCO1, ESCO2, FN3K, GCDH, HADHA, ITGB1BP3, LYCAT, MYST3, MYST4, NAT5, NAT6, PNPLA3, SH3GLB1, YOD1 24 ACAT1(6), ACAT2(5), ACOT11(6), ACYP1(2), DHRS1(4), DHRS2(3), DHRS3(2), DHRS7(9), DHRSX(4), ECHS1(3), EHHADH(9), ESCO1(11), ESCO2(6), GCDH(5), HADHA(7), ITGB1BP3(1), NAT6(2), PNPLA3(6), SH3GLB1(8), YOD1(2) 8986878 101 39 101 38 27 46 13 4 11 0 0.77 0.93 512 SIG_CHEMOTAXIS Genes related to chemotaxis ACTR2, ACTR3, AKT1, AKT2, AKT3, ANGPTL2, ARHGAP1, ARHGAP4, ARHGEF11, BTK, CDC42, CFL1, CFL2, GDI1, GDI2, INPPL1, ITPR1, ITPR2, ITPR3, LIMK1, MYLK, MYLK2, P101-PI3K, PAK1, PAK2, PAK3, PAK4, PAK6, PAK7, PDK1, PIK3CA, PIK3CD, PIK3CG, PIK3R1, PITX2, PPP1R13B, PTEN, RACGAP1, RHO, ROCK1, ROCK2, RPS4X, SAG, WASF1, WASL 39 ACTR2(7), ACTR3(3), AKT1(8), AKT2(4), AKT3(8), ANGPTL2(9), ARHGAP1(2), ARHGAP4(15), ARHGEF11(22), BTK(11), CDC42(5), CFL1(1), CFL2(8), GDI1(4), GDI2(3), ITPR1(31), ITPR2(38), ITPR3(23), LIMK1(7), MYLK(17), MYLK2(7), PAK1(3), PAK2(6), PAK3(14), PAK4(2), PAK6(3), PAK7(12), PDK1(7), PIK3CD(10), PIK3CG(25), PPP1R13B(7), RACGAP1(8), RHO(8), ROCK1(27), ROCK2(15), RPS4X(4), SAG(5), WASF1(3), WASL(8) 21959798 400 70 390 118 118 161 45 17 53 6 0.77 0.93 513 G1_TO_S_CELL_CYCLE_REACTOME ATM, CCNA1, CCNB1, CCND1, CCND2, CCND3, CCNE1, CCNE2, CCNG2, CCNH, CDC25A, CDC45L, CDK2, CDK4, CDK7, CDKN1A, CDKN1B, CDKN1C, CDKN2A, CDKN2B, CDKN2C, CDKN2D, CREB3, CREB3L1, CREB3L3, CREB3L4, CREBL1, CREBL1, TNXB, E2F1, E2F2, E2F3, E2F4, E2F5, E2F6, FLJ14001, GADD45A, GBA2, MCM2, MCM3, MCM4, MCM5, MCM6, MCM7, MDM2, MNAT1, MYC, MYT1, NACA, NACA, FKSG17, ORC1L, ORC2L, ORC3L, ORC4L, ORC5L, ORC6L, PCNA, POLA2, POLE, POLE2, PRIM1, PRIM2A, RB1, RBL1, RPA1, RPA2, RPA3, TFDP1, TFDP2, TP53, WEE1 58 CCNA1(4), CCNB1(8), CCND2(7), CCND3(5), CCNE2(6), CCNG2(4), CCNH(3), CDC25A(9), CDK2(5), CDK4(4), CDK7(6), CDKN1A(1), CDKN1B(5), CDKN2A(1), CDKN2C(3), CDKN2D(3), CREB3(2), CREB3L1(6), CREB3L3(9), CREB3L4(8), E2F2(1), E2F3(5), E2F4(3), E2F5(1), E2F6(3), GBA2(13), MCM2(10), MCM3(9), MCM4(9), MCM5(12), MCM6(9), MCM7(5), MDM2(6), MNAT1(2), MYC(7), NACA(20), PCNA(3), POLE(1), POLE2(4), PRIM1(2), RBL1(17), RPA1(6), RPA2(2), RPA3(4), TFDP2(8), TNXB(25), WEE1(1) 22908150 287 59 280 81 80 128 31 18 30 0 0.77 0.93 514 KREBS_TCA_CYCLE ACO2, CGI_48, CS, DLAT, DLD, DLST, DLST, DLSTP, FH, IDH2, IDH3A, IDH3B, IDH3G, KIAA1348, MDH1, MDH2, OGDH, PC, PDHA1, PDHA2, PDHB, PDHX, PDK1, PDK2, PDK3, PDK4, PDP2, PPM2C, SDHA, SDHA, SDHAL2, SDHB, SDHC, SDHD, SUCLA2, SUCLG1, SUCLG2, WDR50 29 ACO2(8), CS(5), DLAT(2), DLD(7), DLST(10), FH(11), IDH2(7), IDH3A(5), IDH3B(5), IDH3G(9), MDH1(2), MDH2(5), OGDH(11), PC(8), PDHA1(4), PDHA2(10), PDHB(7), PDHX(8), PDK1(7), PDK2(5), PDK3(10), PDK4(7), PDP2(7), SDHA(12), SDHB(1), SDHC(6), SDHD(1), SUCLA2(5), SUCLG1(1) 9549723 186 47 181 66 53 82 21 11 19 0 0.77 0.93 515 HSA00980_METABOLISM_OF_XENOBIOTICS_BY_CYTOCHROME_P450 Genes involved in metabolism of xenobiotics by cytochrome P450 ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, ADHFE1, AKR1C1, AKR1C2, AKR1C3, AKR1C4, ALDH1A3, ALDH3A1, ALDH3B1, ALDH3B2, CYP1A1, CYP1A2, CYP1B1, CYP2B6, CYP2C18, CYP2C19, CYP2C8, CYP2C9, CYP2E1, CYP2F1, CYP2S1, CYP3A4, CYP3A43, CYP3A5, CYP3A7, DHDH, EPHX1, GSTA1, GSTA2, GSTA3, GSTA4, GSTA5, GSTK1, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, GSTO2, GSTP1, GSTT1, GSTT2, GSTZ1, MGST1, MGST2, MGST3, UGT1A1, UGT1A10, UGT1A3, UGT1A4, UGT1A5, UGT1A6, UGT1A7, UGT1A8, UGT1A9, UGT2A1, UGT2A3, UGT2B10, UGT2B11, UGT2B15, UGT2B17, UGT2B28, UGT2B4, UGT2B7 69 ADH1A(2), ADH1B(6), ADH1C(7), ADH4(5), ADH5(3), ADH6(9), ADH7(6), ADHFE1(7), AKR1C1(5), AKR1C2(3), AKR1C3(3), AKR1C4(5), ALDH3A1(6), ALDH3B1(5), ALDH3B2(8), CYP1A1(9), CYP1A2(6), CYP1B1(3), CYP2B6(11), CYP2C18(5), CYP2C19(7), CYP2C8(4), CYP2C9(5), CYP2E1(5), CYP2F1(5), CYP2S1(8), CYP3A4(14), CYP3A43(5), CYP3A5(7), CYP3A7(9), DHDH(3), EPHX1(2), GSTA1(5), GSTA2(6), GSTA3(3), GSTA4(3), GSTA5(2), GSTK1(5), GSTM1(3), GSTM2(1), GSTM3(4), GSTM4(2), GSTM5(2), GSTO2(2), GSTP1(2), GSTZ1(4), MGST1(3), MGST3(1), UGT1A1(6), UGT1A10(8), UGT1A3(4), UGT1A4(4), UGT1A5(7), UGT1A6(5), UGT1A7(9), UGT1A8(4), UGT1A9(4), UGT2A1(9), UGT2A3(5), UGT2B10(14), UGT2B11(22), UGT2B15(9), UGT2B17(4), UGT2B28(14), UGT2B4(10), UGT2B7(10) 19472525 384 66 369 86 106 161 61 20 36 0 0.78 0.93 516 HSA00220_UREA_CYCLE_AND_METABOLISM_OF_AMINO_GROUPS Genes involved in urea cycle and metabolism of amino groups ABP1, ACY1, ADC, AGMAT, ALDH18A1, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH7A1, ALDH9A1, AMD1, AOC2, AOC3, ARG1, ARG2, ASL, ASS1, CPS1, GATM, MAOA, MAOB, NAGS, ODC1, OTC, SAT1, SAT2, SMS, SRM 28 ABP1(12), ACY1(3), ADC(8), AGMAT(3), ALDH18A1(13), ALDH1B1(7), ALDH2(2), ALDH3A1(6), ALDH3A2(2), ALDH7A1(2), ALDH9A1(4), AMD1(3), AOC2(6), AOC3(14), ARG1(5), ARG2(6), ASL(4), ASS1(3), CPS1(24), GATM(8), MAOA(14), MAOB(7), ODC1(3), OTC(8), SMS(8), SRM(1) 9880977 176 46 170 64 50 74 22 8 18 4 0.78 0.93 517 BILE_ACID_BIOSYNTHESIS ACAA1, ACAA2, ADH1A, ADH1A, ADH1B, ADH1C, ADH1B, ADH1C, ADH4, ADH6, ADH7, ADHFE1, AKR1C4, AKR1D1, ALDH1A1, ALDH1A2, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH9A1, BAAT, CEL, CYP27A1, CYP7A1, HADHB, SOAT2, SRD5A1, SRD5A2 27 ACAA1(5), ACAA2(2), ADH1A(2), ADH1B(6), ADH1C(7), ADH4(5), ADH6(9), ADH7(6), ADHFE1(7), AKR1C4(5), AKR1D1(8), ALDH1A1(6), ALDH1A2(9), ALDH1B1(7), ALDH2(2), ALDH3A1(6), ALDH3A2(2), ALDH9A1(4), BAAT(7), CEL(6), CYP27A1(8), CYP7A1(12), HADHB(5), SOAT2(8), SRD5A1(4), SRD5A2(4) 8060036 152 42 147 43 47 55 25 8 17 0 0.78 0.93 518 HSA00720_REDUCTIVE_CARBOXYLATE_CYCLE Genes involved in reductive carboxylate cycle (CO2 fixation) ACLY, ACO1, ACO2, ACSS1, ACSS2, FH, IDH1, IDH2, LOC441996, MDH1, MDH2, SUCLA2 11 ACLY(9), ACO1(13), ACO2(8), ACSS1(4), ACSS2(11), FH(11), IDH1(4), IDH2(7), MDH1(2), MDH2(5), SUCLA2(5) 4691092 79 32 78 36 22 35 6 7 7 2 0.79 0.93 519 FATTY_ACID_BIOSYNTHESIS_PATH_2 ACAA1, ACAA2, ACAT1, ACAT2, ECHS1, EHHADH, HADHA, HADHB, SDS 9 ACAA1(5), ACAA2(2), ACAT1(6), ACAT2(5), ECHS1(3), EHHADH(9), HADHA(7), HADHB(5), SDS(3) 2850075 45 22 45 13 10 20 8 5 2 0 0.79 0.94 520 BOTULINPATHWAY Blockade of Neurotransmitter Relase by Botulinum Toxin CHRM1, CHRNA1, SNAP25, STX1A, VAMP2 5 CHRM1(6), CHRNA1(6), SNAP25(7), STX1A(2) 1149112 21 17 20 7 8 7 4 1 1 0 0.79 0.94 521 BETAOXIDATIONPATHWAY Beta-Oxidation of Fatty Acids ACADL, ACADM, ACADS, ACAT1, ECHS1, HADHA 6 ACADL(7), ACADM(6), ACADS(5), ACAT1(6), ECHS1(3), HADHA(7) 1813293 34 18 33 14 3 20 5 3 3 0 0.80 0.94 522 HSA00062_FATTY_ACID_ELONGATION_IN_MITOCHONDRIA Genes involved in fatty acid elongation in mitochondria ACAA2, ECHS1, HADH, HADHA, HADHB, HSD17B10, HSD17B4, MECR, PPT1, PPT2 10 ACAA2(2), ECHS1(3), HADH(1), HADHA(7), HADHB(5), HSD17B10(4), HSD17B4(10), MECR(6), PPT1(6), PPT2(3) 2893812 47 23 45 11 6 24 7 6 4 0 0.80 0.94 523 HSA04614_RENIN_ANGIOTENSIN_SYSTEM Genes involved in renin-angiotensin system ACE, ACE2, AGT, AGTR1, AGTR2, ANPEP, CMA1, CPA3, CTSA, CTSG, ENPEP, LNPEP, MAS1, MME, NLN, REN, THOP1 16 ACE(14), ACE2(19), AGT(7), AGTR2(8), ANPEP(13), CMA1(1), CPA3(5), CTSA(7), CTSG(3), ENPEP(13), LNPEP(9), MAS1(2), MME(8), NLN(4), REN(3) 7026122 116 38 112 47 36 38 18 6 14 4 0.80 0.94 524 ERYTHPATHWAY Erythropoietin selectively stimulates erythrocyte differentiation from CFU-GEMM cells in bone marrow. CCL3, CSF2, CSF3, EPO, FLT3, IGF1, IL11, IL1A, IL3, IL6, IL9, KITLG, TGFB1, TGFB2, TGFB3 14 CCL3(1), CSF3(1), EPO(2), FLT3(9), IGF1(3), IL1A(1), IL6(2), KITLG(2), TGFB1(4), TGFB2(6), TGFB3(9) 2884730 40 22 40 13 10 18 4 1 7 0 0.80 0.94 525 IFNAPATHWAY Interferon alpha, active in the immune response, binds to the IFN receptor and activates Jak1 and Tyk2, which phosphorylate Stat1 and Stat2. IFNA1, IFNAR1, IFNAR2, IFNB1, ISGF3G, JAK1, STAT1, STAT2, TYK2 7 IFNAR1(9), IFNAR2(8), IFNB1(4), STAT1(14), STAT2(12), TYK2(7) 2969097 54 25 51 17 14 21 11 4 4 0 0.80 0.94 526 HSA00620_PYRUVATE_METABOLISM Genes involved in pyruvate metabolism ACACA, ACACB, ACAT1, ACAT2, ACOT12, ACSS1, ACSS2, ACYP1, ACYP2, AKR1B1, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH7A1, ALDH9A1, DLAT, DLD, GLO1, GRHPR, HAGH, HAGHL, LDHA, LDHAL6A, LDHAL6B, LDHB, LDHC, LDHD, MDH1, MDH2, ME1, ME2, ME3, PC, PCK1, PCK2, PDHA1, PDHA2, PDHB, PKLR, PKM2 41 ACACA(27), ACACB(31), ACAT1(6), ACAT2(5), ACOT12(10), ACSS1(4), ACSS2(11), ACYP1(2), AKR1B1(2), ALDH1B1(7), ALDH2(2), ALDH3A1(6), ALDH3A2(2), ALDH7A1(2), ALDH9A1(4), DLAT(2), DLD(7), GRHPR(4), HAGH(2), LDHA(6), LDHAL6A(8), LDHAL6B(2), LDHB(2), LDHC(3), LDHD(3), MDH1(2), MDH2(5), ME1(10), ME2(7), ME3(7), PC(8), PCK1(15), PCK2(7), PDHA1(4), PDHA2(10), PDHB(7), PKLR(10), PKM2(5) 15880833 257 60 249 91 70 107 30 11 35 4 0.81 0.94 527 ST_GRANULE_CELL_SURVIVAL_PATHWAY The survival and differentiation of granule cells in the brain is controlled by pro-growth PACAP and pro-apoptotic ceramides. ADPRT, APC, ASAH1, CAMP, CASP3, CERK, CREB1, CREB3, CREB5, CXCL2, DAG1, EPHB2, FOS, GNAQ, IL8RB, ITPKA, ITPKB, JUN, MAP2K4, MAP2K7, MAPK1, MAPK10, MAPK8, MAPK8IP1, MAPK8IP2, MAPK8IP3, MAPK9, PACAP 20 ASAH1(9), CAMP(1), CASP3(4), CERK(8), CREB1(5), CREB3(2), CREB5(6), CXCL2(2), DAG1(7), EPHB2(10), FOS(6), ITPKB(6), JUN(1), MAP2K4(6), MAPK1(2), MAPK10(9), MAPK8(7), MAPK8IP1(5), MAPK9(7) 6359790 103 34 101 38 29 42 8 3 19 2 0.81 0.94 528 IL12PATHWAY IL12 and Stat4 Dependent Signaling Pathway in Th1 Development CCR5, CD3D, CD3E, CD3G, CD3Z, CXCR3, ETV5, IFNG, IL12A, IL12B, IL12RB1, IL12RB2, IL18, IL18R1, JAK2, JUN, MAP2K6, MAPK14, MAPK8, STAT4, TRA@, TRB@, TYK2 19 CD3D(3), CD3E(2), CD3G(2), CXCR3(5), ETV5(10), IFNG(5), IL12A(7), IL12B(3), IL12RB1(16), IL12RB2(11), IL18(1), IL18R1(5), JAK2(21), JUN(1), MAP2K6(9), MAPK14(6), MAPK8(7), STAT4(9), TYK2(7) 6381539 130 36 127 25 26 50 17 14 17 6 0.81 0.94 529 EICOSANOID_SYNTHESIS ALOX12, ALOX15, ALOX15B, ALOX5, ALOX5AP, DPEP1, GGT1, IPLA2(GAMMA), LTA4H, LTC4S, PLA2G2A, PLA2G6, PTGDS, PTGES, PTGIS, PTGS1, PTGS2, TBXAS1 15 ALOX12(6), ALOX15(12), ALOX15B(12), ALOX5(7), ALOX5AP(4), GGT1(10), LTA4H(6), PLA2G6(6), PTGDS(6), PTGES(2), PTGIS(8), PTGS1(8), PTGS2(7), TBXAS1(6) 4640424 100 32 98 26 27 47 13 3 10 0 0.81 0.94 530 HSA00903_LIMONENE_AND_PINENE_DEGRADATION Genes involved in limonene and pinene degradation ACOT11, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH7A1, ALDH9A1, ARD1A, CYP2C19, CYP2C9, DHRS1, DHRS2, DHRS3, DHRS7, DHRSX, ECHS1, EHHADH, ESCO1, ESCO2, HADHA, LYCAT, MYST3, MYST4, NAT5, NAT6, PNPLA3, SH3GLB1, YOD1 26 ACOT11(6), ALDH1B1(7), ALDH2(2), ALDH3A1(6), ALDH3A2(2), ALDH7A1(2), ALDH9A1(4), CYP2C19(7), CYP2C9(5), DHRS1(4), DHRS2(3), DHRS3(2), DHRS7(9), DHRSX(4), ECHS1(3), EHHADH(9), ESCO1(11), ESCO2(6), HADHA(7), NAT6(2), PNPLA3(6), SH3GLB1(8), YOD1(2) 10656293 117 40 116 47 40 48 11 6 12 0 0.81 0.94 531 HSA03320_PPAR_SIGNALING_PATHWAY Genes involved in PPAR signaling pathway ACAA1, ACADL, ACADM, ACOX1, ACOX2, ACOX3, ACSL1, ACSL3, ACSL4, ACSL5, ACSL6, ADIPOQ, ANGPTL4, APOA1, APOA2, APOA5, APOC3, AQP7, CD36, CPT1A, CPT1B, CPT1C, CPT2, CYP27A1, CYP4A11, CYP4A22, CYP7A1, CYP8B1, DBI, EHHADH, FABP1, FABP2, FABP3, FABP4, FABP5, FABP5L1, FABP6, FABP7, FADS2, GK, GK2, HMGCS2, ILK, LOC642956, LPL, ME1, MMP1, NR1H3, OLR1, PCK1, PCK2, PDPK1, PLIN, PLTP, PPARA, PPARD, PPARG, RXRA, RXRB, RXRG, SCD, SCP2, SLC27A1, SLC27A2, SLC27A4, SLC27A5, SLC27A6, SORBS1, UBC, UCP1 64 ACAA1(5), ACADL(7), ACADM(6), ACOX1(4), ACOX2(7), ACOX3(8), ACSL1(13), ACSL3(10), ACSL5(18), ACSL6(13), ADIPOQ(3), ANGPTL4(1), APOA2(2), APOA5(2), AQP7(6), CD36(7), CPT1A(10), CPT1C(15), CPT2(7), CYP27A1(8), CYP4A11(5), CYP4A22(8), CYP7A1(12), CYP8B1(8), DBI(3), EHHADH(9), FABP1(5), FABP2(1), FABP3(1), FABP5(3), FABP6(3), FABP7(2), FADS2(2), GK(14), GK2(20), HMGCS2(8), ILK(8), LPL(11), ME1(10), MMP1(2), NR1H3(5), OLR1(1), PCK1(15), PCK2(7), PDPK1(3), PLTP(6), PPARA(2), PPARD(6), PPARG(5), RXRA(1), RXRG(10), SCD(9), SCP2(13), SLC27A1(9), SLC27A2(4), SLC27A4(5), SLC27A5(6), SLC27A6(10), SORBS1(22), UBC(5), UCP1(1) 22088619 432 72 419 120 124 181 59 21 45 2 0.81 0.94 532 GPCRPATHWAY G-protein coupled receptors activate adenylyl cyclase, which converts ATP to cAMP, to activate second messenger pathways. ADCY1, CALM1, CALM2, CALM3, CREB1, ELK1, FOS, GNAI1, GNAQ, GNAS, GNB1, GNGT1, HRAS, JUN, MAP2K1, MAPK3, NFATC1, NFATC2, NFATC3, NFATC4, PLCG1, PPP3CA, PPP3CB, PPP3CC, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, PRKCA, PRKCB1, RAF1, RPS6KA3, SYT1 33 ADCY1(17), CALM2(3), CALM3(1), CREB1(5), ELK1(2), FOS(6), GNAI1(4), GNAS(25), GNB1(3), JUN(1), MAP2K1(2), MAPK3(4), NFATC2(15), NFATC3(12), NFATC4(8), PLCG1(12), PPP3CA(4), PPP3CB(7), PPP3CC(6), PRKACB(2), PRKACG(6), PRKAR1A(4), PRKAR2A(4), PRKAR2B(5), PRKCA(10), RAF1(7), RPS6KA3(17), SYT1(4) 11338160 196 50 189 59 56 75 23 14 28 0 0.81 0.94 533 PENTOSE_AND_GLUCURONATE_INTERCONVERSIONS AKR1B1, DCXR, GUSB, RPE, RPE, LOC440001, UCHL1, UCHL3, UGDH, UGT1A10, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, UGT1A6, UGT1A8, UGT1A9, UGT2B15, UGT2B4 18 AKR1B1(2), GUSB(5), RPE(3), UCHL1(5), UCHL3(1), UGDH(3), UGT1A1(6), UGT1A10(8), UGT1A3(4), UGT1A4(4), UGT1A5(7), UGT1A6(5), UGT1A7(9), UGT1A8(4), UGT1A9(4), UGT2B15(9), UGT2B4(10) 5675055 89 33 85 16 31 32 12 5 9 0 0.82 0.94 534 HSA04140_REGULATION_OF_AUTOPHAGY Genes involved in regulation of autophagy ATG12, ATG3, ATG5, ATG7, BECN1, GABARAP, GABARAPL1, IFNA1, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA2, IFNA21, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, IFNG, INS, LOC441925, PIK3C3, PIK3R4, PRKAA1, PRKAA2, ULK1, ULK2, ULK3 27 ATG12(1), ATG3(4), ATG5(3), ATG7(6), GABARAP(2), GABARAPL1(2), IFNA10(2), IFNA13(3), IFNA14(3), IFNA16(2), IFNA17(2), IFNA2(1), IFNA21(2), IFNA4(3), IFNA5(2), IFNA6(6), IFNA7(2), IFNA8(2), IFNG(5), PIK3C3(11), PIK3R4(25), PRKAA1(6), PRKAA2(9), ULK2(10), ULK3(5) 6746014 119 37 118 37 32 49 19 7 12 0 0.82 0.94 535 SKP2E2FPATHWAY E2F-1, a transcription factor that promotes the G1/S transition, is repressed by Rb and activated by cdk2/cyclin E. CCNA1, CCNE1, CDC34, CDK2, CUL1, E2F1, RB1, SKP1A, SKP2, TFDP1 6 CCNA1(4), CDK2(5), CUL1(12), SKP2(6) 2046796 27 17 27 4 5 14 6 0 2 0 0.82 0.95 536 HSA00750_VITAMIN_B6_METABOLISM Genes involved in vitamin B6 metabolism AOX1, PDXK, PDXP, PNPO, PSAT1 5 AOX1(19), PDXK(3), PDXP(1), PNPO(4), PSAT1(5) 1614923 32 18 32 11 10 12 5 1 4 0 0.82 0.95 537 HSA03022_BASAL_TRANSCRIPTION_FACTORS Genes involved in basal transcription factors GTF2A1, GTF2A1L, GTF2A2, GTF2B, GTF2E1, GTF2E2, GTF2F1, GTF2F2, GTF2H1, GTF2H2, GTF2H3, GTF2H4, GTF2I, GTF2IRD1, LOC391764, STON1, TAF1, TAF10, TAF12, TAF13, TAF1L, TAF2, TAF4, TAF4B, TAF5, TAF5L, TAF6, TAF6L, TAF7, TAF7L, TAF9, TAF9B, TBPL1, TBPL2 31 GTF2A1(5), GTF2A1L(2), GTF2B(5), GTF2E1(4), GTF2E2(5), GTF2F1(6), GTF2F2(1), GTF2H1(8), GTF2H2(3), GTF2H3(3), GTF2H4(2), GTF2I(5), GTF2IRD1(15), STON1(2), TAF1(40), TAF10(1), TAF12(1), TAF1L(41), TAF2(17), TAF4(7), TAF4B(11), TAF5(6), TAF5L(4), TAF6(8), TAF6L(8), TAF7(3), TAF7L(10), TAF9(2), TBPL1(4), TBPL2(4) 12706674 233 48 229 66 58 101 34 11 27 2 0.83 0.95 538 HSA00120_BILE_ACID_BIOSYNTHESIS Genes involved in bile acid biosynthesis ACAA1, ACAA2, ACAD8, ACAD9, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, ADHFE1, AKR1B10, AKR1C4, AKR1D1, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH7A1, ALDH9A1, BAAT, CEL, CYP27A1, CYP7A1, HADHB, HSD3B7, LIPA, RDH11, RDH12, RDH13, RDH14, SLC27A5, SOAT1, SOAT2, SRD5A1, SRD5A2 38 ACAA1(5), ACAA2(2), ACAD8(7), ACAD9(10), ADH1A(2), ADH1B(6), ADH1C(7), ADH4(5), ADH5(3), ADH6(9), ADH7(6), ADHFE1(7), AKR1B10(4), AKR1C4(5), AKR1D1(8), ALDH1B1(7), ALDH2(2), ALDH3A1(6), ALDH3A2(2), ALDH7A1(2), ALDH9A1(4), BAAT(7), CEL(6), CYP27A1(8), CYP7A1(12), HADHB(5), HSD3B7(3), LIPA(6), RDH11(3), RDH12(6), RDH13(5), RDH14(3), SLC27A5(6), SOAT1(10), SOAT2(8), SRD5A1(4), SRD5A2(4) 10858009 205 48 200 50 60 80 31 10 22 2 0.83 0.95 539 NICOTINATE_AND_NICOTINAMIDE_METABOLISM AOX1, CD38, ENPP1, ENPP3, NADSYN1, NMNAT1, NMNAT2, NNMT, NNT, NP, NT5C, NT5E, NT5M, QPRT 13 AOX1(19), CD38(7), ENPP1(11), ENPP3(16), NADSYN1(12), NMNAT1(4), NMNAT2(2), NNMT(7), NNT(9), NT5C(1), NT5E(6), NT5M(4) 5019239 98 34 94 20 22 43 20 7 6 0 0.83 0.95 540 FRUCTOSE_AND_MANNOSE_METABOLISM AKR1B1, ALDOA, ALDOB, ALDOC, FBP1, FBP2, FPGT, GCK, GMDS, GMPPA, GMPPB, HK1, HK2, HK3, KHK, MPI, PFKFB1, PFKFB3, PFKFB4, PFKM, PFKP, PMM1, PMM2, SORD, TPI1 25 AKR1B1(2), ALDOA(6), ALDOB(9), ALDOC(4), FBP1(4), FPGT(5), GCK(5), GMDS(3), GMPPA(9), GMPPB(3), HK1(13), HK2(8), HK3(12), KHK(1), MPI(5), PFKFB1(9), PFKFB3(7), PFKFB4(4), PFKM(7), PFKP(11), PMM1(1), PMM2(6), SORD(3), TPI1(1) 8193876 138 43 135 46 39 60 14 11 12 2 0.83 0.95 541 CIRCADIAN_EXERCISE ARNTL, AZIN1, BTG1, C10orf110, C1orf1, CBX3, CEBPB, CLDN5, CLOCK, CRY1, CRY2, DAZAP2, DAZAP2, LOC401029, DNAJA1, EIF4G2, ETV6, G0S2, GENX_3414, GFRA1, GSTM3, GSTP1, HERPUD1, HLA_DMA, HSPA8, IDI1, KLF9, MAP3K7IP2, MYF6, NCKAP1, NCOA4, NR1D2, OAZIN, PER1, PER2, PIGF, PPP1R3C, PPP2CB, PSMA4, PURA, SF3A3, SUMO3, TOB1, TUBB3, UCP3, UGP2, VAPA, ZFR 37 ARNTL(12), AZIN1(3), CBX3(5), CLOCK(11), CRY1(6), CRY2(4), DAZAP2(2), DNAJA1(1), EIF4G2(8), ETV6(9), GFRA1(6), GSTM3(4), GSTP1(2), HERPUD1(1), HSPA8(10), IDI1(4), KLF9(3), MYF6(8), NCKAP1(10), NCOA4(12), NR1D2(5), PER1(15), PER2(8), PIGF(4), PPP1R3C(3), PPP2CB(2), PSMA4(2), SF3A3(6), SUMO3(3), TOB1(2), UCP3(1), UGP2(8), VAPA(5), ZFR(13) 12390477 198 49 193 60 49 84 26 10 26 3 0.84 0.96 542 HSA00902_MONOTERPENOID_BIOSYNTHESIS Genes involved in monoterpenoid biosynthesis CYP2C19, CYP2C9 2 CYP2C19(7), CYP2C9(5) 721302 12 8 12 4 5 6 0 0 1 0 0.84 0.96 543 P27PATHWAY p27 blocks the G1/S transition by inhibiting the checkpoint kinase cdk2/cyclin E and is inhibited by cdk2-mediated ubiquitination. CCNE1, CDK2, CDKN1B, CKS1B, CUL1, E2F1, NEDD8, RB1, RBX1, SKP1A, SKP2, TFDP1, UBE2M 10 CDK2(5), CDKN1B(5), CUL1(12), RBX1(1), SKP2(6), UBE2M(1) 2123515 30 17 30 5 4 18 6 0 2 0 0.85 0.96 544 ARGININE_AND_PROLINE_METABOLISM ABP1, AGMAT, ALDH1A1, ALDH1A2, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH4A1, ALDH9A1, AMD1, AOC2, AOC3, ARG1, ARG2, ASL, ASS, CKB, CKM, CKMT1, CKMT1B, CKMT1A, CKMT2, CPS1, DAO, GAMT, GATM, GLUD1, GOT1, GOT2, MAOA, MAOB, NOS1, NOS2A, NOS3, OAT, ODC1, OTC, P4HA1, P4HA2, P4HA3, P4HB, PYCR1, RARS, SAT, SMS 40 ABP1(12), AGMAT(3), ALDH1A1(6), ALDH1A2(9), ALDH1B1(7), ALDH2(2), ALDH3A1(6), ALDH3A2(2), ALDH4A1(2), ALDH9A1(4), AMD1(3), AOC2(6), AOC3(14), ARG1(5), ARG2(6), ASL(4), CKM(3), CKMT1A(5), CKMT1B(2), CKMT2(5), CPS1(24), DAO(5), GATM(8), GLUD1(4), GOT1(6), GOT2(5), MAOA(14), MAOB(7), NOS1(21), NOS3(11), OAT(7), ODC1(3), OTC(8), P4HA1(8), P4HA2(10), P4HA3(5), P4HB(1), RARS(11), SMS(8) 14375611 272 54 264 88 70 117 35 17 29 4 0.85 0.96 545 HSA00600_SPHINGOLIPID_METABOLISM Genes involved in sphingolipid metabolism ARSA, ARSD, ARSE, ASAH1, ASAH3L, B4GALT6, CERK, DEGS1, DEGS2, ENPP7, FVT1, GAL3ST1, GALC, GBA, GLA, GLB1, LCT, NEU1, NEU2, NEU3, NEU4, PHCA, PPAP2A, PPAP2B, PPAP2C, SGMS1, SGMS2, SGPP1, SGPP2, SMPD1, SMPD2, SMPD3, SMPD4, SPHK1, SPHK2, SPTLC1, SPTLC2, UGCG, UGT8 33 ARSD(9), ARSE(7), ASAH1(9), B4GALT6(5), CERK(8), DEGS1(5), DEGS2(4), ENPP7(3), GAL3ST1(13), GALC(7), GBA(4), GLA(3), GLB1(9), LCT(30), NEU2(5), NEU3(3), PPAP2A(4), PPAP2B(3), SGMS1(3), SGMS2(6), SGPP1(2), SGPP2(3), SMPD1(12), SMPD2(5), SMPD3(6), SMPD4(16), SPHK1(2), SPHK2(1), SPTLC1(6), SPTLC2(6), UGCG(5), UGT8(12) 11178269 216 50 213 62 70 88 18 12 28 0 0.85 0.96 546 HSA00791_ATRAZINE_DEGRADATION Genes involved in atrazine degradation ADAR, APOBEC1, APOBEC2, APOBEC3A, APOBEC3B, APOBEC3C, APOBEC3F, APOBEC3G, APOBEC4 9 ADAR(6), APOBEC1(7), APOBEC2(5), APOBEC3A(2), APOBEC3B(8), APOBEC3C(5), APOBEC3F(6), APOBEC3G(4), APOBEC4(4) 2589565 47 24 47 18 12 22 9 1 1 2 0.85 0.96 547 NUCLEOTIDE_SUGARS_METABOLISM GALE, GALT, TGDS, UGDH, UXS1 5 GALE(2), GALT(2), TGDS(3), UGDH(3), UXS1(5) 1422050 15 13 15 9 5 4 4 1 1 0 0.86 0.97 548 MEF2DPATHWAY Mef2 transcription factors promote calcium-induced apoptosis in T cells and are regulated by MAP kinases and histone deacetylases. CABIN1, CALM1, CALM2, CALM3, CAPN2, CAPNS1, CAPNS2, EP300, HDAC1, HDAC2, MEF2D, NFATC1, NFATC2, PPP3CA, PPP3CB, PPP3CC, PRKCA, PRKCB1, SYT1, TRA@, TRB@ 18 CABIN1(15), CALM2(3), CALM3(1), CAPN2(6), CAPNS1(3), CAPNS2(6), EP300(29), HDAC1(4), HDAC2(5), MEF2D(7), NFATC2(15), PPP3CA(4), PPP3CB(7), PPP3CC(6), PRKCA(10), SYT1(4) 8113333 125 37 123 44 29 45 20 7 22 2 0.86 0.97 549 HSA00626_NAPHTHALENE_AND_ANTHRACENE_DEGRADATION Genes involved in naphthalene and anthracene degradation CARM1, DHRS1, DHRS2, DHRS3, DHRS7, DHRSX, HEMK1, LCMT1, LCMT2, METTL2B, METTL6, PRMT2, PRMT3, PRMT5, PRMT6, PRMT7, PRMT8, WBSCR22 18 CARM1(6), DHRS1(4), DHRS2(3), DHRS3(2), DHRS7(9), DHRSX(4), HEMK1(2), LCMT1(4), LCMT2(13), METTL2B(3), METTL6(2), PRMT3(10), PRMT5(11), PRMT6(6), PRMT7(4), PRMT8(9), WBSCR22(9) 5012547 101 30 99 23 27 41 10 5 14 4 0.87 0.97 550 IL22BPPATHWAY IL-22 is produced by T cells and induces the acute phase inflammatory response in hepatocytes. IL10RA, IL22, IL22RA1, IL22RA2, JAK1, JAK2, JAK3, SOCS3, STAT1, STAT3, STAT5A, STAT5B, TYK2 12 IL10RA(7), IL22RA1(2), IL22RA2(1), JAK2(21), JAK3(9), STAT1(14), STAT3(12), STAT5A(5), STAT5B(5), TYK2(7) 5454458 83 32 81 35 16 42 10 4 5 6 0.87 0.97 551 SA_REG_CASCADE_OF_CYCLIN_EXPR Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. CCNA1, CCNA2, CCND1, CCNE1, CCNE2, CDK2, CDK4, CDKN1B, CDKN2A, E2F1, E2F2, E2F4, PRB1 11 CCNA1(4), CCNA2(3), CCNE2(6), CDK2(5), CDK4(4), CDKN1B(5), CDKN2A(1), E2F2(1), E2F4(3), PRB1(4) 2533400 36 19 35 9 5 12 11 3 5 0 0.87 0.97 552 REELINPATHWAY Reelin is secreted by neurons and recognized by receptors including cadherin related neuronal receptors, which promote phosphorylation of Dab1. CDK5, CDK5R1, DAB1, FYN, LRP8, RELN, VLDLR 7 CDK5(1), CDK5R1(5), DAB1(7), FYN(7), LRP8(3), RELN(48), VLDLR(6) 4995100 77 31 75 35 22 27 16 3 7 2 0.87 0.97 553 ACETAMINOPHENPATHWAY Acetaminophen selectively inhibits Cox-3, which is localized to the brain, and yields the toxic metabolite NAPQI when processed by CAR in the liver. CYP1A2, CYP2E1, CYP3A, NR1I3, PTGS1, PTGS2 5 CYP1A2(6), CYP2E1(5), NR1I3(7), PTGS1(8), PTGS2(7) 1873760 33 18 32 8 9 12 3 2 7 0 0.88 0.97 554 PENTOSE_PHOSPHATE_PATHWAY ALDOA, ALDOB, ALDOC, FBP1, FBP2, G6PD, GPI, H6PD, PFKM, PFKP, PGD, PGLS, PGM1, PGM3, PRPS1, PRPS1L1, PRPS2, RBKS, RPE, RPE, LOC440001, RPIA, TAL1, TALDO1, TALDO1, HSUP1, TKT 23 ALDOA(6), ALDOB(9), ALDOC(4), FBP1(4), G6PD(3), GPI(9), H6PD(5), PFKM(7), PFKP(11), PGD(4), PGLS(1), PGM1(9), PGM3(6), PRPS1(3), PRPS1L1(5), PRPS2(10), RBKS(1), RPE(3), RPIA(7), TAL1(1), TALDO1(6), TKT(7) 6914987 121 38 116 42 34 53 15 7 10 2 0.88 0.97 555 HSA00440_AMINOPHOSPHONATE_METABOLISM Genes involved in aminophosphonate metabolism CARM1, CHPT1, HEMK1, LCMT1, LCMT2, METTL2B, METTL6, PCYT1A, PCYT1B, PRMT2, PRMT3, PRMT5, PRMT6, PRMT7, PRMT8, WBSCR22 16 CARM1(6), HEMK1(2), LCMT1(4), LCMT2(13), METTL2B(3), METTL6(2), PCYT1A(7), PCYT1B(4), PRMT3(10), PRMT5(11), PRMT6(6), PRMT7(4), PRMT8(9), WBSCR22(9) 4773069 90 29 88 21 24 36 10 5 11 4 0.88 0.97 556 CDC42RACPATHWAY PI3 kinase stimulates cell migration by activating cdc42, which activates ARP2/3, which in turn promotes formation of new actin fibers. ACTR2, ACTR3, ARHA, ARPC1A, ARPC1B, ARPC2, ARPC3, ARPC4, CDC42, PAK1, PDGFRA, PIK3CA, PIK3R1, RAC1, WASL 12 ACTR2(7), ACTR3(3), ARPC1A(7), ARPC1B(3), ARPC2(2), ARPC3(2), CDC42(5), PAK1(3), PDGFRA(29), WASL(8) 3420329 69 22 67 10 20 27 8 2 10 2 0.88 0.97 557 CDK5PATHWAY Cdk5, a regulatory kinase implicated in neuronal development, represses Mek1, which downregulates the MAP kinase pathway. CDK5, CDK5R1, DPM2, EGR1, HRAS, KLK2, MAP2K1, MAP2K2, MAPK1, MAPK3, NGFB, NGFR, RAF1 11 CDK5(1), CDK5R1(5), DPM2(4), EGR1(8), KLK2(2), MAP2K1(2), MAPK1(2), MAPK3(4), NGFR(4), RAF1(7) 2632824 39 23 39 16 12 15 6 3 3 0 0.88 0.97 558 MITOCHONDRIAPATHWAY Pro-apoptotic signaling induces mitochondria to release cytochrome c, which stimulates Apaf-1 to activate caspase 9. APAF1, BAK1, BAX, BCL2, BCL2L1, BID, BIK, BIRC2, BIRC3, BIRC4, CASP3, CASP6, CASP7, CASP8, CASP9, CYCS, DFFA, DFFB, DIABLO, ENDOG, PDCD8 17 APAF1(19), BAK1(4), BAX(4), BCL2L1(3), BID(3), BIK(1), BIRC2(13), BIRC3(3), CASP3(4), CASP6(4), CASP7(4), CASP9(3), CYCS(3), DFFA(1), DFFB(3), DIABLO(2) 4185368 74 26 72 23 17 25 14 4 14 0 0.88 0.97 559 GLYCOSAMINOGLYCAN_DEGRADATION ARSB, GALNS, GLB1, GNS, GUSB, HEXA, HEXB, IDS, IDUA, LCT, NAGLU 10 ARSB(6), GLB1(9), GNS(2), GUSB(5), HEXA(3), HEXB(4), IDS(6), LCT(30), NAGLU(3) 4640424 68 31 68 29 20 30 8 5 5 0 0.88 0.97 560 HSA05110_CHOLERA_INFECTION Genes involved in cholera - infection ACTG1, ACTG2, ADCY3, ADCY9, AK1, ARF1, ARF3, ARF4, ARF5, ARF6, ARL4D, ATP6V0A1, ATP6V0A2, ATP6V0A4, ATP6V0B, ATP6V0C, ATP6V0D1, ATP6V0D2, ATP6V0E1, ATP6V1A, ATP6V1C1, ATP6V1C2, ATP6V1D, ATP6V1E1, ATP6V1E2, ATP6V1F, ATP6V1G1, ATP6V1G2, ATP6V1G3, ATP6V1H, ERO1L, GNAS, PDIA4, PLCG1, PLCG2, PRKCA, SEC61A1, SEC61A2, SEC61B, SEC61G, TRIM23 41 ACTG2(1), ADCY3(8), ADCY9(25), AK1(2), ARF1(4), ARF3(2), ARF4(3), ARF5(5), ARF6(2), ARL4D(1), ATP6V0A1(5), ATP6V0A2(11), ATP6V0A4(14), ATP6V0B(2), ATP6V0C(2), ATP6V0D1(3), ATP6V0D2(10), ATP6V1A(7), ATP6V1C1(3), ATP6V1C2(9), ATP6V1D(4), ATP6V1E1(3), ATP6V1E2(4), ATP6V1F(2), ATP6V1G1(1), ATP6V1G2(4), ATP6V1G3(2), ATP6V1H(5), ERO1L(6), GNAS(25), PDIA4(4), PLCG1(12), PLCG2(27), PRKCA(10), SEC61A1(3), SEC61A2(6), SEC61B(1), SEC61G(3), TRIM23(12) 12614420 253 53 247 72 73 112 24 11 31 2 0.88 0.97 561 ETCPATHWAY Energy is extracted from carbohydrates via oxidation and transferred to the mitochondrial electron transport chain, which couples ATP synthesis to the reduction of oxygen to water. ATP5A1, CYCS, GPD2, MTCO1, NDUFA1, SDHA, SDHB, SDHC, SDHD, UQCRC1 9 ATP5A1(11), CYCS(3), GPD2(5), NDUFA1(1), SDHA(12), SDHB(1), SDHC(6), SDHD(1), UQCRC1(6) 2329533 46 20 46 9 10 24 6 3 3 0 0.89 0.97 562 EOSINOPHILSPATHWAY Recruitment of eosinophils in the inflammatory response observed in asthma occurs via the chemoattractant eotaxin binding to the CCR3 receptor. CCL11, CCL5, CCR3, CSF2, HLA-DRA, HLA-DRB1, IL3, IL5 8 CCL5(4), CCR3(5), HLA-DRB1(1), IL5(2) 1083387 12 9 12 2 2 4 2 0 4 0 0.89 0.97 563 HSA00920_SULFUR_METABOLISM Genes involved in sulfur metabolism BPNT1, CHST11, CHST12, CHST13, PAPSS1, PAPSS2, SULT1A1, SULT1A2, SULT1A3, SULT1A4, SULT1E1, SULT2A1, SULT2B1, SUOX 11 BPNT1(1), CHST11(9), CHST12(5), PAPSS1(6), PAPSS2(6), SULT1A1(8), SULT1A2(2), SULT1E1(13), SULT2A1(7), SULT2B1(4), SUOX(4) 3175354 65 26 61 26 19 32 8 2 4 0 0.90 0.98 564 IL10PATHWAY The cytokine IL-10 inhibits the inflammatory response by macrophages via activation of heme oxygenase 1. BLVRA, BLVRB, HMOX1, IL10, IL10RA, IL10RB, IL1A, IL6, JAK1, STAT1, STAT3, STAT5A, TNF 12 BLVRA(2), BLVRB(1), HMOX1(3), IL10(4), IL10RA(7), IL10RB(9), IL1A(1), IL6(2), STAT1(14), STAT3(12), STAT5A(5), TNF(1) 3418178 61 25 60 22 17 30 6 0 8 0 0.90 0.98 565 HSA00780_BIOTIN_METABOLISM Genes involved in biotin metabolism BTD, HLCS, SPCS1, SPCS3 4 BTD(8), HLCS(5), SPCS1(1), SPCS3(3) 1059965 17 11 17 13 6 5 4 0 2 0 0.90 0.98 566 PMLPATHWAY Ring-shaped PML nuclear bodies regulate transcription and are required co-activators in p53- and DAXX-mediated apoptosis. CREBBP, DAXX, HRAS, PAX3, PML, PRAM-1, RARA, RB1, SIRT1, SP100, TNF, TNFRSF1A, TNFRSF1B, TNFRSF6, TNFSF6, TP53, UBL1 11 CREBBP(37), DAXX(11), PAX3(4), PML(10), RARA(3), SIRT1(8), SP100(15), TNF(1), TNFRSF1A(6), TNFRSF1B(3) 5462106 98 31 96 27 27 44 11 3 13 0 0.91 0.98 567 HSA00290_VALINE_LEUCINE_AND_ISOLEUCINE_BIOSYNTHESIS Genes involved in valine, leucine and isoleucine biosynthesis BCAT1, BCAT2, IARS, IARS2, ILVBL, LARS, LARS2, PDHA1, PDHA2, PDHB, VARS, VARS2 12 BCAT1(9), BCAT2(6), IARS(13), IARS2(21), ILVBL(7), LARS(23), LARS2(9), PDHA1(4), PDHA2(10), PDHB(7), VARS(8), VARS2(5) 6538801 122 34 121 25 31 55 15 6 15 0 0.91 0.98 568 CDMACPATHWAY Cadmium 2+ promotes cell proliferation in cultured macrophages by entering the cell via calcium channels and activating the MAP kinase pathway. CUZD1, FOS, HRAS, JUN, MAP2K1, MAPK1, MAPK3, MYC, NFKB1, NFKBIA, PLCB1, PRKCA, PRKCB1, RAF1, RELA, TNF 15 CUZD1(6), FOS(6), JUN(1), MAP2K1(2), MAPK1(2), MAPK3(4), MYC(7), NFKB1(12), NFKBIA(3), PLCB1(6), PRKCA(10), RAF1(7), RELA(6), TNF(1) 5383714 73 31 73 20 12 27 18 9 7 0 0.91 0.98 569 CALCINEURINPATHWAY Increased intracellular calcium activates the phosphatase calcineurin in differentiating keratinocytes. CALM1, CALM2, CALM3, CDKN1A, GNAQ, MARCKS, NFATC1, NFATC2, NFATC3, NFATC4, PLCG1, PPP3CA, PPP3CB, PPP3CC, PRKCA, PRKCB1, SP1, SP3, SYT1 17 CALM2(3), CALM3(1), CDKN1A(1), NFATC2(15), NFATC3(12), NFATC4(8), PLCG1(12), PPP3CA(4), PPP3CB(7), PPP3CC(6), PRKCA(10), SP1(6), SP3(12), SYT1(4) 6970913 101 36 97 42 30 36 16 5 14 0 0.91 0.98 570 FOLATE_BIOSYNTHESIS ALPI, ALPL, ALPP, ALPP, ALPPL2, ALPPL2, DHFR, FPGS, GCH1, GGH, SPR 9 ALPI(3), ALPL(3), ALPP(4), ALPPL2(5), DHFR(3), FPGS(3), GCH1(2), GGH(3), SPR(2) 2019311 28 19 28 10 8 15 2 3 0 0 0.91 0.98 571 INOSITOL_METABOLISM ALDH6A1, ALDOA, ALDOB, ALDOC, TPI1 5 ALDH6A1(5), ALDOA(6), ALDOB(9), ALDOC(4), TPI1(1) 1383093 25 14 24 6 7 9 3 2 2 2 0.91 0.98 572 PYRUVATE_METABOLISM ACACA, ACAS2, ACAS2L, ACAT1, ACAT2, ACYP1, ACYP2, ADH5, AKR1B1, ALDH1A1, ALDH1A2, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH9A1, CACH_1, DLAT, DLD, GLO1, GRHPR, HAGH, HAGHL, LDHA, LDHB, LDHC, LDHD, MDH1, MDH2, ME1, ME2, ME3, PC, PCK1, PDHA1, PDHA2, PDHB, PKLR, PKM2 36 ACACA(27), ACAT1(6), ACAT2(5), ACYP1(2), ADH5(3), AKR1B1(2), ALDH1A1(6), ALDH1A2(9), ALDH1B1(7), ALDH2(2), ALDH3A1(6), ALDH3A2(2), ALDH9A1(4), DLAT(2), DLD(7), GRHPR(4), HAGH(2), LDHA(6), LDHB(2), LDHC(3), LDHD(3), MDH1(2), MDH2(5), ME1(10), ME2(7), ME3(7), PC(8), PCK1(15), PDHA1(4), PDHA2(10), PDHB(7), PKLR(10), PKM2(5) 12406490 200 51 197 71 52 82 25 10 31 0 0.92 0.98 573 MCALPAINPATHWAY In integrin-mediated cell migration, calpains digest links between the actin cytoskeleton and focal adhesion proteins. ACTA1, CAPN1, CAPN2, CAPNS1, CAPNS2, CXCR3, EGF, EGFR, HRAS, ITGA1, ITGB1, MAPK1, MAPK3, MYL2, MYLK, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, PTK2, PXN, TLN1, VIL2 23 ACTA1(4), CAPN1(4), CAPN2(6), CAPNS1(3), CAPNS2(6), CXCR3(5), EGF(24), EGFR(20), ITGA1(20), ITGB1(12), MAPK1(2), MAPK3(4), MYL2(1), MYLK(17), PRKACB(2), PRKACG(6), PRKAR1A(4), PRKAR2A(4), PRKAR2B(5), PTK2(11), PXN(6), TLN1(28) 11322864 194 46 187 62 55 80 23 7 29 0 0.92 0.98 574 MALATEXPATHWAY The tricarboxylate transfer pathway shuttles acetyl groups of acetyl-CoA between mitochondria and the cytoplasm. ACLY, CS, MDH1, ME1, PC, PDHA1, SLC25A1, SLC25A11 8 ACLY(9), CS(5), MDH1(2), ME1(10), PC(8), PDHA1(4), SLC25A1(2), SLC25A11(2) 3162448 42 22 42 27 7 21 6 3 5 0 0.92 0.98 575 ST_FAS_SIGNALING_PATHWAY The Fas receptor induces apoptosis and NF-kB activation when bound to Fas ligand. ADPRT, ALG2, BAK1, BAX, BFAR, BIRC4, BTK, CAD, CASP10, CASP3, CASP8, CASP8AP2, CD7, CDK2AP1, CSNK1A1, DAXX, DEDD, DEDD2, DFFA, DIABLO, EGFR, EPHB2, FADD, FAF1, FAIM2, FREQ, HRB, HSPB1, IL1A, IL8, MAP2K4, MAP2K7, MAP3K1, MAP3K5, MAPK1, MAPK10, MAPK8, MAPK8IP1, MAPK8IP2, MAPK8IP3, MAPK9, MCP, MET, NFAT5, NFKB1, NFKB2, NFKBIA, NFKBIB, NFKBIE, NFKBIL1, NFKBIL2, NR0B2, PFN1, PFN2, PTPN13, RALBP1, RIPK1, ROCK1, SMPD1, TNFRSF6, TNFRSF6B, TP53, TPX2, TRAF2, TUFM, VIL2 51 ALG2(2), BAK1(4), BAX(4), BFAR(9), BTK(11), CAD(38), CASP10(10), CASP3(4), CASP8AP2(18), CDK2AP1(1), CSNK1A1(5), DAXX(11), DEDD(1), DEDD2(2), DFFA(1), DIABLO(2), EGFR(20), EPHB2(10), FADD(1), FAF1(8), FAIM2(2), IL1A(1), IL8(3), MAP2K4(6), MAP3K5(21), MAPK1(2), MAPK10(9), MAPK8(7), MAPK8IP1(5), MAPK9(7), MET(10), NFAT5(13), NFKB1(12), NFKB2(10), NFKBIA(3), NFKBIB(3), NFKBIE(6), NFKBIL1(2), NR0B2(2), PFN1(1), PFN2(3), PTPN13(27), RALBP1(7), RIPK1(8), ROCK1(27), SMPD1(12), TPX2(14), TRAF2(5), TUFM(13) 22443773 403 70 391 108 91 173 58 15 58 8 0.92 0.98 576 PROTEASOME PSMA1, PSMA2, PSMA3, PSMA4, PSMA5, PSMA6, PSMA7, PSMB1, PSMB10, PSMB2, PSMB3, PSMB4, PSMB5, PSMB6, PSMB7, PSMB8, PSMB9 17 PSMA1(5), PSMA2(5), PSMA3(5), PSMA4(2), PSMA5(1), PSMA6(2), PSMB1(2), PSMB10(3), PSMB2(2), PSMB3(4), PSMB4(3), PSMB5(4), PSMB6(3), PSMB7(1), PSMB8(3), PSMB9(1) 3051313 46 22 43 12 9 20 7 2 8 0 0.92 0.98 577 STEROID_BIOSYNTHESIS CYP17A1, F13B, HSD17B1, HSD17B2, HSD17B3, HSD17B4, HSD17B7, HSD3B1, HSD3B2 9 CYP17A1(3), F13B(13), HSD17B1(3), HSD17B2(3), HSD17B3(6), HSD17B4(10), HSD17B7(4), HSD3B1(1), HSD3B2(5) 2838125 48 23 45 20 13 23 5 1 6 0 0.92 0.98 578 HSA04130_SNARE_INTERACTIONS_IN_VESICULAR_TRANSPORT Genes involved in SNARE interactions in vesicular transport BET1, BET1L, BNIP1, C1orf142, GOSR1, GOSR2, SEC22B, SNAP23, SNAP25, SNAP29, STX10, STX11, STX12, STX16, STX17, STX18, STX19, STX2, STX3, STX4, STX5, STX6, STX7, STX8, TSNARE1, USE1, VAMP1, VAMP2, VAMP3, VAMP4, VAMP5, VAMP7, VAMP8, VTI1A, VTI1B, YKT6 35 BET1(2), BNIP1(7), GOSR1(1), SEC22B(1), SNAP23(2), SNAP25(7), SNAP29(2), STX10(1), STX11(3), STX12(3), STX16(1), STX17(3), STX18(2), STX3(8), STX4(6), STX5(6), STX6(4), STX7(4), STX8(4), TSNARE1(5), USE1(4), VAMP1(1), VAMP4(2), VAMP8(1), VTI1B(9), YKT6(6) 5730264 95 33 92 31 26 40 13 3 11 2 0.92 0.98 579 FMLPPATHWAY The fMLP receptor is a G-protein coupled receptor in neutrophils that recognizes formylated bacterial peptides and activates NADPH oxidase. CALM1, CALM2, CALM3, CAMK1, CAMK1G, ELK1, FPR1, GNA15, GNB1, GNGT1, HRAS, MAP2K1, MAP2K2, MAP2K3, MAP2K6, MAP3K1, MAPK1, MAPK14, MAPK3, NCF1, NCF2, NFATC1, NFATC2, NFATC3, NFATC4, NFKB1, NFKBIA, PAK1, PIK3C2G, PLCB1, PPP3CA, PPP3CB, PPP3CC, RAC1, RAF1, RELA, SYT1 35 CALM2(3), CALM3(1), CAMK1(9), CAMK1G(5), ELK1(2), FPR1(4), GNA15(1), GNB1(3), MAP2K1(2), MAP2K3(8), MAP2K6(9), MAPK1(2), MAPK14(6), MAPK3(4), NCF1(5), NCF2(6), NFATC2(15), NFATC3(12), NFATC4(8), NFKB1(12), NFKBIA(3), PAK1(3), PIK3C2G(22), PLCB1(6), PPP3CA(4), PPP3CB(7), PPP3CC(6), RAF1(7), RELA(6), SYT1(4) 11987045 185 47 183 50 51 60 33 9 30 2 0.93 0.98 580 HSA00760_NICOTINATE_AND_NICOTINAMIDE_METABOLISM Genes involved in nicotinate and nicotinamide metabolism AOX1, BST1, C9orf95, CD38, ENPP1, ENPP3, NADK, NADSYN1, NMNAT1, NMNAT2, NMNAT3, NNMT, NNT, NP, NT5C, NT5C1A, NT5C1B, NT5C2, NT5C3, NT5E, NT5M, NUDT12, PBEF1, QPRT 22 AOX1(19), BST1(5), CD38(7), ENPP1(11), ENPP3(16), NADK(4), NADSYN1(12), NMNAT1(4), NMNAT2(2), NMNAT3(2), NNMT(7), NNT(9), NT5C(1), NT5C1A(2), NT5C1B(10), NT5C2(7), NT5C3(8), NT5E(6), NT5M(4), NUDT12(2) 7422623 138 39 132 36 35 54 31 12 6 0 0.93 0.98 581 BENZOATE_DEGRADATION_VIA_COA_LIGATION ACAT1, ACAT2, ACYP1, ACYP2, ECHS1, EHHADH, GCDH, HADHA, SDHB, SDS 10 ACAT1(6), ACAT2(5), ACYP1(2), ECHS1(3), EHHADH(9), GCDH(5), HADHA(7), SDHB(1), SDS(3) 2646208 41 21 41 15 9 20 6 4 2 0 0.93 0.98 582 HSA00561_GLYCEROLIPID_METABOLISM Genes involved in glycerolipid metabolism ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, ADHFE1, AGK, AGPAT1, AGPAT2, AGPAT3, AGPAT4, AGPAT6, AKR1A1, AKR1B1, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH7A1, ALDH9A1, CEL, DAK, DGAT1, DGAT2, DGKA, DGKB, DGKD, DGKE, DGKG, DGKH, DGKI, DGKQ, DGKZ, GK, GK2, GLA, GLB1, GPAM, LCT, LIPA, LIPC, LIPF, LIPG, LPL, LYCAT, MGLL, PNLIP, PNLIPRP1, PNLIPRP2, PNPLA3, PPAP2A, PPAP2B, PPAP2C, UGCGL1, UGCGL2 52 ADH1A(2), ADH1B(6), ADH1C(7), ADH4(5), ADH5(3), ADH6(9), ADH7(6), ADHFE1(7), AGK(4), AGPAT1(2), AGPAT2(1), AGPAT3(6), AGPAT4(4), AGPAT6(8), AKR1A1(1), AKR1B1(2), ALDH1B1(7), ALDH2(2), ALDH3A1(6), ALDH3A2(2), ALDH7A1(2), ALDH9A1(4), CEL(6), DAK(8), DGAT2(4), DGKA(15), DGKB(17), DGKD(21), DGKE(4), DGKG(13), DGKH(11), DGKI(21), DGKZ(9), GK(14), GK2(20), GLA(3), GLB1(9), GPAM(7), LCT(30), LIPA(6), LIPC(8), LIPF(7), LIPG(6), LPL(11), MGLL(6), PNLIP(3), PNLIPRP1(4), PNLIPRP2(8), PNPLA3(6), PPAP2A(4), PPAP2B(3) 19553307 380 62 370 108 106 157 58 23 34 2 0.93 0.98 583 HSA00031_INOSITOL_METABOLISM Genes involved in inositol metabolism ALDH6A1, TPI1 2 ALDH6A1(5), TPI1(1) 575512 6 5 6 2 3 1 1 0 1 0 0.93 0.98 584 SA_PROGRAMMED_CELL_DEATH Programmed cell death, or apoptosis, eliminates damaged or unneeded cells. APAF1, BAD, BAK1, BAX, BCL10, BCL2, BCL2L1, BCL2L11, BID, CASP8AP2, CASP9, CES1 12 APAF1(19), BAD(2), BAK1(4), BAX(4), BCL10(2), BCL2L1(3), BCL2L11(4), BID(3), CASP8AP2(18), CASP9(3), CES1(12) 3983652 74 27 73 22 18 26 18 4 8 0 0.93 0.98 585 LYSINE_DEGRADATION AADAT, AASDH, AASDHPPT, AASS, ACAT1, ACAT2, ALDH1A1, ALDH1A2, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH9A1, ATP6V0C, SHMT1, BAT8, BBOX1, DLST, DLSTP, DOT1L, ECHS1, EHHADH, EHMT1, EHMT2, GCDH, HADHA, PLOD1, PLOD2, PLOD3, SDS, SHMT1, SHMT2, TMLHE 31 AADAT(6), AASDH(11), AASDHPPT(4), AASS(6), ACAT1(6), ACAT2(5), ALDH1A1(6), ALDH1A2(9), ALDH1B1(7), ALDH2(2), ALDH3A1(6), ALDH3A2(2), ALDH9A1(4), ATP6V0C(2), BBOX1(4), DLST(10), DOT1L(8), ECHS1(3), EHHADH(9), EHMT2(6), GCDH(5), HADHA(7), PLOD1(4), PLOD2(16), PLOD3(11), SDS(3), SHMT1(6), SHMT2(8), TMLHE(5) 12013813 181 46 178 53 53 61 29 14 20 4 0.93 0.98 586 ACE_INHIBITOR_PATHWAY_PHARMGKB ACE, AGT, AGTR1, AGTR2, BDKRB2, KNG1, NOS3, REN 8 ACE(14), AGT(7), AGTR2(8), BDKRB2(9), KNG1(8), NOS3(11), REN(3) 3061590 60 24 57 21 19 28 6 2 5 0 0.94 0.98 587 GLYCEROLIPID_METABOLISM ADH1A, ADH1A, ADH1B, ADH1C, ADH1B, ADH1C, ADH4, ADH6, ADH7, ADHFE1, AGPAT1, AGPAT2, AGPAT3, AGPAT4, AKR1A1, AKR1B1, ALDH1A1, ALDH1A2, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH9A1, CEL, DGAT1, DGKA, DGKB, DGKD, DGKE, DGKG, DGKH, DGKQ, DGKZ, GK, GLA, GLB1, LCT, LIPC, LIPF, LIPG, LPL, PNLIP, PNLIPRP1, PNLIPRP2, PPAP2A, PPAP2B, PPAP2C 42 ADH1A(2), ADH1B(6), ADH1C(7), ADH4(5), ADH6(9), ADH7(6), ADHFE1(7), AGPAT1(2), AGPAT2(1), AGPAT3(6), AGPAT4(4), AKR1A1(1), AKR1B1(2), ALDH1A1(6), ALDH1A2(9), ALDH1B1(7), ALDH2(2), ALDH3A1(6), ALDH3A2(2), ALDH9A1(4), CEL(6), DGKA(15), DGKB(17), DGKD(21), DGKE(4), DGKG(13), DGKH(11), DGKZ(9), GK(14), GLA(3), GLB1(9), LCT(30), LIPC(8), LIPF(7), LIPG(6), LPL(11), PNLIP(3), PNLIPRP1(4), PNLIPRP2(8), PPAP2A(4), PPAP2B(3) 15873185 300 56 295 89 83 120 49 17 29 2 0.94 0.98 588 HISTIDINE_METABOLISM ABP1, ALDH1A1, ALDH1A2, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH3B1, ALDH3B2, ALDH9A1, AOC2, AOC3, ASPA, CNDP1, DDC, HAL, HARS, HARSL, HDC, HNMT, MAOA, MAOB, PRPS1, PRPS2 24 ABP1(12), ALDH1A1(6), ALDH1A2(9), ALDH1B1(7), ALDH2(2), ALDH3A1(6), ALDH3A2(2), ALDH3B1(5), ALDH3B2(8), ALDH9A1(4), AOC2(6), AOC3(14), ASPA(5), CNDP1(6), DDC(11), HAL(6), HARS(4), HDC(10), HNMT(5), MAOA(14), MAOB(7), PRPS1(3), PRPS2(10) 8577710 162 38 158 55 44 63 21 10 24 0 0.94 0.98 589 HSA01040_POLYUNSATURATED_FATTY_ACID_BIOSYNTHESIS Genes involved in polyunsaturated fatty acid biosynthesis ACAA1, ACOX1, ACOX3, ELOVL2, ELOVL5, ELOVL6, FADS1, FADS2, FASN, GPSN2, HADHA, HSD17B12, PECR, SCD 12 ACAA1(5), ACOX1(4), ACOX3(8), ELOVL2(5), ELOVL5(4), ELOVL6(3), FADS1(5), FADS2(2), HADHA(7), HSD17B12(4), PECR(5), SCD(9) 3716450 61 24 61 18 16 27 8 4 6 0 0.94 0.98 590 HSA00040_PENTOSE_AND_GLUCURONATE_INTERCONVERSIONS Genes involved in pentose and glucuronate interconversions AKR1B1, DCXR, GUSB, RPE, UGDH, UGP2, UGT1A1, UGT1A10, UGT1A3, UGT1A4, UGT1A5, UGT1A6, UGT1A7, UGT1A8, UGT1A9, UGT2A1, UGT2A3, UGT2B10, UGT2B11, UGT2B15, UGT2B17, UGT2B28, UGT2B4, UGT2B7, XYLB 25 AKR1B1(2), GUSB(5), RPE(3), UGDH(3), UGP2(8), UGT1A1(6), UGT1A10(8), UGT1A3(4), UGT1A4(4), UGT1A5(7), UGT1A6(5), UGT1A7(9), UGT1A8(4), UGT1A9(4), UGT2A1(9), UGT2A3(5), UGT2B10(14), UGT2B11(22), UGT2B15(9), UGT2B17(4), UGT2B28(14), UGT2B4(10), UGT2B7(10), XYLB(9) 8802370 178 39 169 36 59 64 30 8 17 0 0.94 0.98 591 ACETYLCHOLINE_SYNTHESIS ACHE, CHAT, CHKA, PCYT1A, PDHA1, PDHA2, PEMT, SLC18A3 8 ACHE(4), CHAT(1), CHKA(8), PCYT1A(7), PDHA1(4), PDHA2(10), PEMT(2) 2379723 36 19 36 13 12 11 6 3 4 0 0.94 0.98 592 HSA00520_NUCLEOTIDE_SUGARS_METABOLISM Genes involved in nucleotide sugars metabolism GALE, GALT, TGDS, UGDH, UGP2, UXS1 6 GALE(2), GALT(2), TGDS(3), UGDH(3), UGP2(8), UXS1(5) 1796563 23 15 22 10 9 7 5 1 1 0 0.94 0.98 593 ST_PAC1_RECEPTOR_PATHWAY The signaling peptide PACAP binds to its receptor, PAC1R, which activates adenylyl cyclase and phospholipase C. ASAH1, CAMP, DAG1, GAS, GNAQ, ITPKA, ITPKB, PACAP 5 ASAH1(9), CAMP(1), DAG1(7), ITPKB(6) 1846275 23 18 23 13 8 11 1 0 3 0 0.94 0.98 594 EEA1PATHWAY The FYVE-finger proteins EEA1 and HRS are localized to endosome membranes and regulate sorting and ubiquitination in the vesicle transport system. EEA1, EGF, EGFR, HGS, RAB5A, TF, TFRC 7 EEA1(20), EGF(24), EGFR(20), RAB5A(2), TF(15), TFRC(6) 4485074 87 28 84 20 25 32 12 5 13 0 0.94 0.98 595 1_2_DICHLOROETHANE_DEGRADATION ALDH1A1, ALDH1A2, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH9A1 8 ALDH1A1(6), ALDH1A2(9), ALDH1B1(7), ALDH2(2), ALDH3A1(6), ALDH3A2(2), ALDH9A1(4) 2683253 36 19 35 16 14 12 2 3 5 0 0.95 0.98 596 ASCORBATE_AND_ALDARATE_METABOLISM ALDH1A1, ALDH1A2, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH9A1 8 ALDH1A1(6), ALDH1A2(9), ALDH1B1(7), ALDH2(2), ALDH3A1(6), ALDH3A2(2), ALDH9A1(4) 2683253 36 19 35 16 14 12 2 3 5 0 0.95 0.98 597 RAC1PATHWAY Rac-1 is a Rho family G protein that stimulates formation of actin-dependent structures such as filopodia and lamellopodia. ARFIP2, CDK5, CDK5R1, CFL1, CHN1, LIMK1, MAP3K1, MYL2, MYLK, NCF2, PAK1, PDGFRA, PIK3CA, PIK3R1, PLD1, PPP1R12B, RAC1, RALBP1, RPS6KB1, TRIO, VAV1, WASF1 19 ARFIP2(2), CDK5(1), CDK5R1(5), CFL1(1), CHN1(1), LIMK1(7), MYL2(1), MYLK(17), NCF2(6), PAK1(3), PDGFRA(29), PLD1(16), PPP1R12B(18), RALBP1(7), RPS6KB1(3), TRIO(38), VAV1(16), WASF1(3) 10055447 174 43 166 48 46 68 16 6 32 6 0.95 0.98 598 HSA00603_GLYCOSPHINGOLIPID_BIOSYNTHESIS_GLOBOSERIES Genes involved in glycosphingolipid biosynthesis - globoseries A4GALT, B3GALNT1, B3GALT5, FUT1, FUT2, FUT9, GBGT1, GLA, HEXA, HEXB, NAGA, ST3GAL1, ST3GAL2, ST8SIA1 14 B3GALNT1(5), B3GALT5(6), FUT1(5), FUT2(3), FUT9(12), GBGT1(6), GLA(3), HEXA(3), HEXB(4), NAGA(3), ST3GAL1(2), ST3GAL2(4), ST8SIA1(4) 3554408 60 25 57 19 16 28 7 3 6 0 0.95 0.98 599 LIMONENE_AND_PINENE_DEGRADATION ALDH1A1, ALDH1A2, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH9A1, ECHS1, EHHADH, HADHA, SDS 12 ALDH1A1(6), ALDH1A2(9), ALDH1B1(7), ALDH2(2), ALDH3A1(6), ALDH3A2(2), ALDH9A1(4), ECHS1(3), EHHADH(9), HADHA(7), SDS(3) 4060849 58 25 57 27 20 21 5 7 5 0 0.95 0.98 600 CBLPATHWAY Activated EGF receptors undergo endocytosis into clathrin-coated vesicles, where they are recycled to the membrane or ubiquitinated by Cbl. CBL, CSF1R, EGF, EGFR, GRB2, MET, PDGFRA, PRKCA, PRKCB1, SH3GLB1, SH3GLB2, SH3KBP1, SRC 12 CBL(10), CSF1R(7), EGF(24), EGFR(20), GRB2(3), MET(10), PDGFRA(29), PRKCA(10), SH3GLB1(8), SH3GLB2(3), SH3KBP1(10), SRC(2) 6861212 136 35 131 48 40 51 23 6 14 2 0.96 0.98 601 FBW7PATHWAY Cyclin E interacts with cell cycle checkpoint kinase cdk2 to allow transcription of genes required for S phase, including transcription of additional cyclin E. CCNE1, CDC34, CDK2, CUL1, E2F1, FBXW7, RB1, SKP1A, TFDP1 4 CDK2(5), CUL1(12) 1359910 17 12 17 2 3 10 4 0 0 0 0.96 0.98 602 SULFUR_METABOLISM BPNT1, PAPSS1, PAPSS2, SULT1A2, SULT1A3, SULT1A3, SULT1A4, SULT1E1, SULT2A1, SUOX 7 BPNT1(1), PAPSS1(6), PAPSS2(6), SULT1A2(2), SULT1E1(13), SULT2A1(7), SUOX(4) 2179680 39 19 36 14 10 19 6 2 2 0 0.96 0.99 603 DCPATHWAY Dendritic cells internalize and present antigen, after which they migrate to lymphocyte-rich tissues and induce T and B cell differentiation. ANPEP, CD2, CD33, CD5, CD7, CSF2, IFNA1, IFNB1, IFNG, IL10, IL12A, IL12B, IL13, IL3, IL4, IL5, ITGAX, TLR2, TLR4, TLR7, TLR9, TNFRSF5 21 ANPEP(13), CD2(4), CD33(11), CD5(7), IFNB1(4), IFNG(5), IL10(4), IL12A(7), IL12B(3), IL5(2), ITGAX(9), TLR2(12), TLR4(14), TLR7(15), TLR9(7) 6604765 117 35 114 44 34 47 15 8 11 2 0.97 0.99 604 HSA00130_UBIQUINONE_BIOSYNTHESIS Genes involved in ubiquinone biosynthesis COQ2, COQ3, COQ5, COQ6, COQ7, ND1, ND2, ND3, ND4, ND4L, ND5, ND6, NDUFA12, NDUFA13, NDUFB11 8 COQ2(1), COQ3(4), COQ5(4), COQ6(3), COQ7(3), NDUFA13(1) 1409144 16 13 16 5 2 9 3 1 1 0 0.97 0.99 605 HSA00642_ETHYLBENZENE_DEGRADATION Genes involved in ethylbenzene degradation ARD1A, DHRS1, DHRS2, DHRS3, DHRS7, DHRSX, ESCO1, ESCO2, LYCAT, MYST3, MYST4, NAT5, NAT6, PNPLA3, SH3GLB1 12 DHRS1(4), DHRS2(3), DHRS3(2), DHRS7(9), DHRSX(4), ESCO1(11), ESCO2(6), NAT6(2), PNPLA3(6), SH3GLB1(8) 5790253 55 26 55 21 17 24 6 0 8 0 0.98 0.99 606 CAPROLACTAM_DEGRADATION AKR1A1, ECHS1, EHHADH, HADHA, SDS 5 AKR1A1(1), ECHS1(3), EHHADH(9), HADHA(7), SDS(3) 1618986 23 13 23 14 6 10 3 4 0 0 0.98 1.00 607 HSA00960_ALKALOID_BIOSYNTHESIS_II Genes involved in alkaloid biosynthesis II AADAC, ABP1, AOC2, AOC3, ARD1A, CES1, CES7, DDHD1, ESCO1, ESCO2, LIPA, LYCAT, MYST3, MYST4, NAT5, NAT6, PLA1A, PNPLA3, PPME1, PRDX6, SH3GLB1 18 AADAC(5), ABP1(12), AOC2(6), AOC3(14), CES1(12), DDHD1(14), ESCO1(11), ESCO2(6), LIPA(6), NAT6(2), PLA1A(5), PNPLA3(6), PPME1(1), PRDX6(2), SH3GLB1(8) 8989268 110 34 107 41 31 38 21 5 13 2 0.98 1.00 608 HSA00790_FOLATE_BIOSYNTHESIS Genes involved in folate biosynthesis ALPI, ALPL, ALPP, ALPPL2, ASCC3, ASCC3L1, ATP13A2, DDX18, DDX19A, DDX23, DDX4, DDX41, DDX47, DDX50, DDX51, DDX52, DDX54, DDX55, DDX56, DHFR, DHX58, ENTPD7, EP400, ERCC2, ERCC3, FPGS, GCH1, GGH, IFIH1, MOV10L1, NUDT5, NUDT8, PTS, QDPR, RAD54B, RAD54L, RUVBL2, SETX, SKIV2L2, SMARCA2, SMARCA5, SPR 40 ALPI(3), ALPL(3), ALPP(4), ALPPL2(5), ASCC3(25), ATP13A2(6), DDX18(14), DDX19A(1), DDX23(12), DDX4(18), DDX41(2), DDX47(8), DDX50(11), DDX52(7), DDX54(8), DDX55(5), DDX56(6), DHFR(3), DHX58(5), ENTPD7(7), ERCC2(4), ERCC3(11), FPGS(3), GCH1(2), GGH(3), IFIH1(5), NUDT5(1), NUDT8(1), PTS(2), QDPR(1), RAD54B(14), RAD54L(5), RUVBL2(6), SETX(41), SKIV2L2(20), SMARCA2(24), SMARCA5(19), SPR(2) 21254270 317 59 305 94 78 120 58 17 37 7 0.98 1.00 609 HSA00641_3_CHLOROACRYLIC_ACID_DEGRADATION Genes involved in 3-chloroacrylic acid degradation ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, ADHFE1, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH7A1, ALDH9A1 15 ADH1A(2), ADH1B(6), ADH1C(7), ADH4(5), ADH5(3), ADH6(9), ADH7(6), ADHFE1(7), ALDH1B1(7), ALDH2(2), ALDH3A1(6), ALDH3A2(2), ALDH7A1(2), ALDH9A1(4) 4558447 68 24 66 17 21 25 11 3 8 0 0.99 1.00 610 HSA03050_PROTEASOME Genes involved in proteasome PSMA1, PSMA2, PSMA3, PSMA4, PSMA5, PSMA6, PSMA7, PSMB1, PSMB2, PSMB3, PSMB4, PSMB5, PSMB6, PSMB7, PSMC2, PSMC3, PSMD1, PSMD11, PSMD12, PSMD13, PSMD2, PSMD6 22 PSMA1(5), PSMA2(5), PSMA3(5), PSMA4(2), PSMA5(1), PSMA6(2), PSMB1(2), PSMB2(2), PSMB3(4), PSMB4(3), PSMB5(4), PSMB6(3), PSMB7(1), PSMC2(2), PSMC3(1), PSMD1(14), PSMD11(5), PSMD12(4), PSMD13(1), PSMD2(11), PSMD6(2) 5593078 79 28 74 21 18 33 12 2 14 0 0.99 1.00 611 HSA00930_CAPROLACTAM_DEGRADATION Genes involved in caprolactam degradation AKR1A1, ASAHL, ECHS1, EHHADH, HADH, HADHA, HSD17B10, HSD17B4, NTAN1, SIRT1, SIRT2, SIRT5, SIRT7, VNN2, VNN3 12 AKR1A1(1), ECHS1(3), EHHADH(9), HADH(1), HADHA(7), HSD17B10(4), HSD17B4(10), NTAN1(3), SIRT1(8), SIRT2(7), SIRT5(3), VNN2(10) 3895700 66 22 64 21 15 36 9 4 2 0 0.99 1.00 612 GLOBOSIDE_METABOLISM A4GALT, FUT1, FUT2, FUT9, GBGT1, GLA, HEXA, HEXB, NAGA, SIAT4A, SIAT4B, ST3GAL1, ST3GAL2, ST3GAL4, ST8SIA1 13 FUT1(5), FUT2(3), FUT9(12), GBGT1(6), GLA(3), HEXA(3), HEXB(4), NAGA(3), ST3GAL1(2), ST3GAL2(4), ST3GAL4(4), ST8SIA1(4) 3332855 53 22 52 16 14 24 9 3 3 0 0.99 1.00 613 HSA00564_GLYCEROPHOSPHOLIPID_METABOLISM Genes involved in glycerophospholipid metabolism ACHE, AGPAT1, AGPAT2, AGPAT3, AGPAT4, AGPAT6, ARD1A, CDIPT, CDS1, CDS2, CHAT, CHKA, CHKB, CHPT1, CRLS1, DGKA, DGKB, DGKD, DGKE, DGKG, DGKH, DGKI, DGKQ, DGKZ, ESCO1, ESCO2, ETNK1, ETNK2, GNPAT, GPAM, GPD1, GPD1L, GPD2, LCAT, LYCAT, LYPLA1, LYPLA2, LYPLA3, MYST3, MYST4, NAT5, NAT6, PCYT1A, PCYT1B, PEMT, PHOSPHO1, PISD, PLA2G10, PLA2G12A, PLA2G12B, PLA2G1B, PLA2G2A, PLA2G2D, PLA2G2E, PLA2G2F, PLA2G3, PLA2G4A, PLA2G5, PLA2G6, PLD1, PLD2, PNPLA3, PPAP2A, PPAP2B, PPAP2C, PTDSS1, PTDSS2, SH3GLB1 61 ACHE(4), AGPAT1(2), AGPAT2(1), AGPAT3(6), AGPAT4(4), AGPAT6(8), CDIPT(1), CDS1(3), CDS2(2), CHAT(1), CHKA(8), DGKA(15), DGKB(17), DGKD(21), DGKE(4), DGKG(13), DGKH(11), DGKI(21), DGKZ(9), ESCO1(11), ESCO2(6), ETNK1(9), ETNK2(3), GNPAT(11), GPAM(7), GPD1(6), GPD1L(3), GPD2(5), LCAT(2), LYPLA1(2), LYPLA2(5), NAT6(2), PCYT1A(7), PCYT1B(4), PEMT(2), PISD(5), PLA2G10(1), PLA2G12A(1), PLA2G12B(3), PLA2G1B(1), PLA2G2D(2), PLA2G2E(3), PLA2G2F(3), PLA2G3(5), PLA2G4A(11), PLA2G5(2), PLA2G6(6), PLD1(16), PLD2(7), PNPLA3(6), PPAP2A(4), PPAP2B(3), PTDSS1(6), PTDSS2(1), SH3GLB1(8) 21566165 330 60 327 117 87 131 48 20 42 2 1.00 1.00 614 HSA00053_ASCORBATE_AND_ALDARATE_METABOLISM Genes involved in ascorbate and aldarate metabolism ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH7A1, ALDH9A1, MIOX, UGDH 9 ALDH1B1(7), ALDH2(2), ALDH3A1(6), ALDH3A2(2), ALDH7A1(2), ALDH9A1(4), UGDH(3) 2749695 26 16 25 12 11 8 2 2 3 0 1.00 1.00 615 HSA03060_PROTEIN_EXPORT Genes involved in protein export OXA1L, SEC61A2, SRP19, SRP54, SRP68, SRP72, SRP9, SRPR 8 OXA1L(2), SEC61A2(6), SRP19(3), SRP54(6), SRP68(6), SRP72(8), SRP9(3), SRPR(8) 2641667 42 18 41 12 11 17 5 3 6 0 1.00 1.00 616 HSA00624_1_AND_2_METHYLNAPHTHALENE_DEGRADATION Genes involved in 1- and 2-methylnaphthalene degradation ACAD8, ACAD9, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, ADHFE1, ARD1A, DHRS1, DHRS2, DHRS3, DHRS7, DHRSX, ESCO1, ESCO2, LYCAT, MYST3, MYST4, NAT5, NAT6, PNPLA3, SH3GLB1 22 ACAD8(7), ACAD9(10), ADH1A(2), ADH1B(6), ADH1C(7), ADH4(5), ADH5(3), ADH6(9), ADH7(6), ADHFE1(7), DHRS1(4), DHRS2(3), DHRS3(2), DHRS7(9), DHRSX(4), ESCO1(11), ESCO2(6), NAT6(2), PNPLA3(6), SH3GLB1(8) 8769627 117 32 116 32 30 47 18 2 18 2 1.00 1.00