| Tumor | BCR | Clinical | CN | Methylation | mRNA | mRNAseq | miR | miRseq | MAF |
| STAD | 149 | 148 | 134 | 118 | 0 | 58 | 0 | 125 | 0 |
| Pipeline | NotRunnable | Runnable | InProcess | Successful | Unsuccessful | |
|---|---|---|---|---|---|---|
| 1 | Aggregate_Clusters | 0 | 0 | 0 | 1 | 0 |
| 2 | CopyNumber_GeneBySample | 0 | 0 | 0 | 1 | 0 |
| 3 | CopyNumber_Gistic2 | 0 | 0 | 0 | 1 | 0 |
| 4 | CopyNumber_Preprocess | 0 | 0 | 0 | 1 | 0 |
| 5 | Correlate_CopyNumber_vs_miR | 1 | 0 | 0 | 0 | 0 |
| 6 | Correlate_CopyNumber_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 7 | Correlate_Methylation_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 8 | Methylation_Clustering_CNMF | 0 | 0 | 0 | 1 | 0 |
| 9 | Methylation_Preprocess | 0 | 0 | 0 | 0 | 1 |
| 10 | miRseq_Clustering_CNMF | 0 | 0 | 0 | 1 | 0 |
| 11 | miRseq_Clustering_Consensus | 0 | 0 | 0 | 1 | 0 |
| 12 | miRseq_Preprocess | 0 | 0 | 0 | 1 | 0 |
| 13 | miR_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 14 | miR_Clustering_Consensus | 1 | 0 | 0 | 0 | 0 |
| 15 | miR_FindDirectTargets | 1 | 0 | 0 | 0 | 0 |
| 16 | mRNAseq_Clustering_CNMF | 0 | 0 | 0 | 1 | 0 |
| 17 | mRNAseq_Clustering_Consensus | 0 | 0 | 0 | 1 | 0 |
| 18 | mRNAseq_Preprocess | 0 | 0 | 0 | 1 | 0 |
| 19 | mRNA_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 20 | mRNA_Clustering_Consensus | 1 | 0 | 0 | 0 | 0 |
| 21 | mRNA_Preprocess_Median | 0 | 0 | 0 | 0 | 1 |
| 22 | Mutation_Assessor | 1 | 0 | 0 | 0 | 0 |
| 23 | Mutation_Significance | 1 | 0 | 0 | 0 | 0 |
| 24 | Pathway_FindEnrichedGenes | 1 | 0 | 0 | 0 | 0 |
| 25 | Pathway_Paradigm_Expression | 1 | 0 | 0 | 0 | 0 |
| 26 | Pathway_Paradigm_Expression_CopyNumber | 1 | 0 | 0 | 0 | 0 |
| 27 | Pathway_Paradigm_Lite | 1 | 0 | 0 | 0 | 0 |
| Total | 14 | 0 | 0 | 11 | 2 |