Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]
getCNExpCorrelation1.reducedseg	BRCA.RS.tsv	gdac.broadinstitute.org_BRCA.CopyNumber_GeneBySample.Level_4.2012021700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00289:48	Correlate_CopyNumber_vs_mRNA_2012021700	BRCA.CORS.tsv	Correlation-CopyNumber_Expression_miRNA	Level_4	text	gdac.broadinstitute.org_BRCA.Correlate_CopyNumber_vs_mRNA.Level_4.2012021700.0.0
getCNExpCorrelation1.reducedseg	BRCA.RS.tsv	gdac.broadinstitute.org_BRCA.CopyNumber_GeneBySample.Level_4.2012021700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00289:48	Correlate_CopyNumber_vs_mRNA_2012021700	OUTPUT.CORS.png	Correlation-CopyNumber_Expression_miRNA	Level_4	png	gdac.broadinstitute.org_BRCA.Correlate_CopyNumber_vs_mRNA.Level_4.2012021700.0.0
getCNExpCorrelation1.reducedseg	BRCA.RS.tsv	gdac.broadinstitute.org_BRCA.CopyNumber_GeneBySample.Level_4.2012021700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00289:48	Correlate_CopyNumber_vs_mRNA_2012021700	report.html	report	Level_4	html	gdac.broadinstitute.org_BRCA.Correlate_CopyNumber_vs_mRNA.Level_4.2012021700.0.0
getCNExpCorrelation1.mrnaexp	BRCA.medianexp.txt	gdac.broadinstitute.org_BRCA.mRNA_Preprocess_Median.Level_4.2012021700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00289:48	Correlate_CopyNumber_vs_mRNA_2012021700	BRCA.CORS.tsv	Correlation-CopyNumber_Expression_miRNA	Level_4	text	gdac.broadinstitute.org_BRCA.Correlate_CopyNumber_vs_mRNA.Level_4.2012021700.0.0
getCNExpCorrelation1.mrnaexp	BRCA.medianexp.txt	gdac.broadinstitute.org_BRCA.mRNA_Preprocess_Median.Level_4.2012021700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00289:48	Correlate_CopyNumber_vs_mRNA_2012021700	OUTPUT.CORS.png	Correlation-CopyNumber_Expression_miRNA	Level_4	png	gdac.broadinstitute.org_BRCA.Correlate_CopyNumber_vs_mRNA.Level_4.2012021700.0.0
getCNExpCorrelation1.mrnaexp	BRCA.medianexp.txt	gdac.broadinstitute.org_BRCA.mRNA_Preprocess_Median.Level_4.2012021700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00289:48	Correlate_CopyNumber_vs_mRNA_2012021700	report.html	report	Level_4	html	gdac.broadinstitute.org_BRCA.Correlate_CopyNumber_vs_mRNA.Level_4.2012021700.0.0
