Unique Name	Descriptor	Wide Peak Limits	Peak Limits	Region Limits	q values	Residual q values after removing segments shared with higher peaks	Broad or Focal	Amplitude Threshold	TCGA-BI-A0VR-01A-11D-A10T-01	TCGA-BI-A0VS-01A-11D-A10T-01	TCGA-BI-A20A-01A-11D-A14V-01	TCGA-C5-A0TN-01A-21D-A14V-01	TCGA-C5-A1BE-01B-11D-A13V-01	TCGA-C5-A1BF-01B-11D-A13V-01	TCGA-C5-A1BI-01B-11D-A13V-01	TCGA-C5-A1BJ-01A-11D-A13V-01	TCGA-C5-A1BK-01B-11D-A13V-01	TCGA-C5-A1BL-01A-11D-A13V-01	TCGA-C5-A1BM-01A-11D-A13V-01	TCGA-C5-A1BN-01B-11D-A14V-01	TCGA-C5-A1M5-01A-11D-A13V-01	TCGA-C5-A1M6-01A-11D-A13V-01	TCGA-C5-A1M7-01A-11D-A13V-01	TCGA-C5-A1M8-01A-21D-A13V-01	TCGA-C5-A1M9-01A-11D-A13V-01	TCGA-C5-A1ME-01A-11D-A13V-01	TCGA-C5-A1MF-01A-11D-A13V-01	TCGA-C5-A1MH-01A-11D-A14V-01	TCGA-C5-A1MI-01A-11D-A14V-01	TCGA-C5-A1MJ-01A-11D-A14V-01	TCGA-C5-A1MK-01A-11D-A14V-01	TCGA-C5-A1ML-01A-11D-A14V-01	TCGA-C5-A1MN-01A-11D-A14V-01	TCGA-C5-A1MP-01A-11D-A14V-01	TCGA-DR-A0ZL-01A-11D-A10T-01	TCGA-DR-A0ZM-01A-12D-A10T-01	TCGA-DS-A0VK-01A-21D-A10T-01	TCGA-DS-A0VL-01A-21D-A10T-01	TCGA-DS-A0VM-01A-11D-A10T-01	TCGA-DS-A0VN-01A-21D-A10T-01	TCGA-EA-A1QT-01A-11D-A14V-01	TCGA-EX-A1H5-01A-31D-A13V-01	TCGA-FU-A23K-01A-11D-A16M-01	TCGA-FU-A23L-01A-11D-A16M-01	
Amplification Peak  1	3q26.1  	chr3:163643792-163719647(probes 357427:357454)    	chr3:163644311-163719578(probes 357428:357453)    	chr3:163644311-163719821(probes 357428:357456)  	0.034255	   0.10186		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	2	2	2	0	0	0	1	1	1	1	1	0	2	2	1	1	0	1	2	1	0	0	1	2	0	2	1	0	1	2	1	0	2	1	0	2	
Amplification Peak  2	3q26.1  	chr3:166992045-199501827(probes 358937:377681)    	chr3:168346916-168650841(probes 359608:359758)    	chr3:167027750-199501827(probes 358954:377681)  	0.019988	  0.041082		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	2	2	2	0	2	0	1	1	1	2	1	0	2	2	1	1	0	1	2	1	0	0	1	2	1	1	2	0	2	2	1	1	2	1	0	2	
Amplification Peak  3	7p11.2  	chr7:55018826-55426994(probes 721408:721801)        	chr7:55019759-55421760(probes 721409:721800)        	chr7:55019759-55432197(probes 721409:721803)      	0.057281	  0.057281		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	
Amplification Peak  4	8q24.21 	chr8:1-146274826(probes 773194:855386)               	chr8:128361183-128387571(probes 844574:844596)    	chr8:128361183-128402744(probes 844574:844600)  	0.041082	   0.99915		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	2	0	0	0	0	0	0	0	0	1	0	2	1	0	0	0	0	1	0	0	0	1	0	0	1	1	0	0	1	2	0	1	0	2	2	
Amplification Peak  5	8q24.21 	chr8:129098497-129100915(probes 845099:845103)    	chr8:129098587-129100798(probes 845100:845102)    	chr8:129045648-129101798(probes 845072:845105)  	0.045931	  0.074639		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	2	0	0	0	0	0	0	0	0	1	0	2	1	0	0	2	0	1	0	0	0	1	0	0	1	0	0	2	1	2	0	1	0	1	1	
Amplification Peak  6	8q24.21 	chr8:129524135-129592226(probes 845483:845533)    	chr8:129527669-129591992(probes 845484:845532)    	chr8:129527669-129598971(probes 845484:845535)  	0.081818	   0.17435		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	2	0	0	0	0	0	0	0	2	1	1	1	1	0	0	0	0	1	0	0	0	1	0	0	1	0	0	0	1	2	0	1	0	1	1	
Amplification Peak  7	9p24.1  	chr9:5649828-5709211(probes 860021:860042)            	chr9:5650242-5709161(probes 860022:860041)            	chr9:5593335-5782155(probes 859992:860082)          	0.019988	  0.019988		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	2	0	
Amplification Peak  8	11q13.3 	chr11:69516254-70078801(probes 1045194:1045482)    	chr11:69516399-70077506(probes 1045195:1045481)    	chr11:69408710-70427940(probes 1045172:1045706)  	0.041082	  0.041082		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	2	2	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	
Amplification Peak  9	11q22.1 	chr11:101256134-101818609(probes 1064825:1065101)	chr11:101256452-101816296(probes 1064826:1065100)	chr11:99389996-104344309(probes 1063368:1066877)	0.00020212	 0.0027819		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	1	2	0	0	0	2	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	2	0	0	0	0	0	0	
Amplification Peak 10	13q22.1 	chr13:73093889-73119658(probes 1199307:1199320)    	chr13:73095348-73119188(probes 1199308:1199319)    	chr13:73095348-73120584(probes 1199308:1199322)  	0.071279	  0.071279		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	2	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	
Amplification Peak 11	16p13.13	chr16:11785794-11835481(probes 1322892:1322918)    	chr16:11787909-11835418(probes 1322893:1322917)    	chr16:11783288-11985008(probes 1322891:1322943)  	0.037252	  0.037252		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	
Amplification Peak 12	20q11.21	chr20:26020583-29820251(probes 1487763:1487995)    	chr20:29339934-29538710(probes 1487787:1487873)    	chr20:26021581-30439475(probes 1487764:1488277)  	0.00647	   0.00647		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	2	2	2	0	1	0	0	0	0	1	0	0	0	2	0	0	0	1	0	0	2	0	2	0	1	1	0	0	2	0	0	0	2	0	2	1	
Amplification Peak 13	21q22.2 	chr21:38710567-39610234(probes 1525539:1526365)    	chr21:38710675-39602792(probes 1525540:1526364)    	chr21:38710675-39615492(probes 1525540:1526367)  	0.064467	  0.064467		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	1	1	0	1	0	0	1	0	0	0	0	0	0	2	0	0	0	
Deletion Peak  1	1p36.22	chr1:1-222417645(probes 1:112580)                 	chr1:8841982-12192346(probes 3217:4718)              	chr1:8813396-12322682(probes 3174:4767)              	0.12708	    0.12708		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	
Deletion Peak  2	2q37.1 	chr2:213855358-242951149(probes 247376:264000)  	chr2:232002030-235075256(probes 258260:259891)    	chr2:198640417-242951149(probes 238505:264000)    	2.2714e-05	 2.2714e-05		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	1	1	1	1	1	1	0	1	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	1	1	0	1	0	0	0	
Deletion Peak  3	3p22.1 	chr3:40553687-42109081(probes 290041:291039)      	chr3:41214111-41262696(probes 290468:290615)        	chr3:41237491-41237645(probes 290542:290543)        	0.079247	   0.079247		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	1	1	0	1	1	0	0	1	1	1	0	0	0	1	0	0	0	0	1	0	0	1	1	0	1	0	1	0	1	1	0	1	0	1	
Deletion Peak  4	3p14.2 	chr3:59009803-61522370(probes 299513:301736)      	chr3:59706800-61213257(probes 300048:301538)        	chr3:60301849-60737236(probes 300783:301204)        	1.2157e-07	 1.2157e-07		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	1	1	0	1	1	1	0	1	1	1	0	0	0	1	0	0	1	0	1	0	0	1	2	0	1	0	1	0	1	1	0	1	0	1	
Deletion Peak  5	4q32.3 	chr4:167241131-174329125(probes 469835:473841)  	chr4:169248209-171257759(probes 470782:472053)    	chr4:167710153-172819579(probes 470086:473005)    	0.12708	    0.16217		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	1	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	1	1	0	1	0	0	0	0	0	0	1	0	0	
Deletion Peak  6	4q35.1 	chr4:174672203-191273063(probes 474010:483960)  	chr4:183476894-184003692(probes 479827:480193)    	chr4:183716250-183724948(probes 480011:480012)    	0.077278	    0.15258		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	1	1	1	0	0	0	0	0	0	0	1	0	1	0	0	1	0	0	0	1	0	0	1	1	0	1	0	0	0	0	0	0	1	0	0	
Deletion Peak  7	5q12.1 	chr5:1-180857866(probes 483961:586809)             	chr5:59816705-60181076(probes 518140:518321)        	chr5:59463643-60152369(probes 517988:518307)        	0.20931	    0.21755		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	1	0	1	1	0	0	0	1	0	0	1	0	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	1	1	1	0	1	1	0	1	
Deletion Peak  8	6q26   	chr6:161613089-163073197(probes 681089:682185)  	chr6:161687510-163073197(probes 681127:682185)    	chr6:162267059-162279324(probes 681657:681658)    	0.0024205	  0.0024205		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	1	0	0	0	1	0	0	1	1	0	1	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	1	
Deletion Peak  9	7q31.33	chr7:109385398-154370149(probes 745131:770742)  	chr7:126484307-127045443(probes 754738:755149)    	chr7:125971340-127074053(probes 754433:755166)    	0.14687	    0.15258		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	1	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	
Deletion Peak 10	9p24.3 	chr9:1-140273252(probes 855387:926613)             	chr9:1-3892074(probes 855387:858498)                   	chr9:324525-326069(probes 855388:855389)                	0.23217	    0.23217		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0	2	0	1	0	0	0	
Deletion Peak 11	10q23.2	chr10:89302988-89611040(probes 978707:978921)    	chr10:89567192-89601600(probes 978895:978915)      	chr10:89370298-89611040(probes 978753:978921)      	0.012697	   0.012697		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	1	0	0	0	0	2	0	0	
Deletion Peak 12	10q26.2	chr10:97355027-135374737(probes 983800:1008358) 	chr10:128822744-128886884(probes 1004494:1004528)	chr10:128771097-129072991(probes 1004463:1004673)	0.19982	    0.19982		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	
Deletion Peak 13	11q14.2	chr11:78825689-90243998(probes 1050181:1057066)  	chr11:85008161-85669822(probes 1053910:1054199)    	chr11:84685214-85680692(probes 1053772:1054208)    	0.02917	     0.1053		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	1	1	0	0	0	0	0	0	1	1	0	1	0	1	1	0	1	1	0	1	0	0	0	0	0	0	0	0	1	1	0	0	
Deletion Peak 14	11q25  	chr11:17358096-134452384(probes 1018821:1086970)	chr11:128208647-133791406(probes 1082953:1086864)	chr11:103700186-134452384(probes 1066465:1086970)	0.0010424	  0.0024205		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	1	1	1	1	0	1	1	1	1	1	1	1	1	1	0	1	1	0	1	1	0	1	0	0	1	0	1	1	0	0	1	1	0	0	
Deletion Peak 15	13q32.3	chr13:1-114142980(probes 1165158:1225338)       	chr13:99978652-99985257(probes 1215707:1215709)    	chr13:99983003-99987313(probes 1215709:1215710)    	0.23222	    0.23217		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	
Deletion Peak 16	20p12.1	chr20:6695556-29311252(probes 1474457:1487771)    	chr20:13913126-15984135(probes 1479225:1480528)    	chr20:15336361-15337545(probes 1479877:1479878)    	0.18818	    0.17837		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	
Deletion Peak 17	21q21.1	chr21:18174997-25682320(probes 1511458:1516355)  	chr21:21026751-21156833(probes 1513218:1513242)    	chr21:20354879-21459240(probes 1512836:1513493)    	0.081912	   0.079247		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	2	0	0	1	
Amplification Peak  1 - CN values	3q26.1  	chr3:163643792-163719647(probes 357427:357454)    	chr3:163644311-163719578(probes 357428:357453)    	chr3:163644311-163719821(probes 357428:357456)  	0.034255	   0.10186		Actual Copy Change Given	1.0226	1.3364	1.0054	0.076854	-0.0012473	0.037641	0.60016	0.41412	0.77775	0.58169	0.64231	0.032723	1.4803	1.4883	0.39928	0.81298	0.11293	0.34112	3.3299	0.61112	0.12904	0.22344	0.33707	5.4493	0.069491	0.90573	0.54347	-0.015484	0.65424	2.301	0.82186	0.29056	6	0.68291	0.14018	1.0587	
Amplification Peak  2 - CN values	3q26.1  	chr3:166992045-199501827(probes 358937:377681)    	chr3:168346916-168650841(probes 359608:359758)    	chr3:167027750-199501827(probes 358954:377681)  	0.019988	  0.041082		Actual Copy Change Given	0.9868	1.3743	1.0054	-0.00069303	4.7146	0.020203	0.61697	0.44189	0.7031	1.1279	0.62097	0.033251	1.4885	1.4813	0.37677	0.77291	0.23109	0.34955	2.8799	0.61112	0.1631	0.22344	0.44392	5.5115	0.63362	0.8913	1.1087	-0.0090081	1.039	2.3163	0.82186	0.3161	1.1893	0.67845	0.14018	1.1085	
Amplification Peak  3 - CN values	7p11.2  	chr7:55018826-55426994(probes 721408:721801)        	chr7:55019759-55421760(probes 721409:721800)        	chr7:55019759-55432197(probes 721409:721803)      	0.057281	  0.057281		Actual Copy Change Given	0	-0.019589	0.033972	0.67215	-0.00027724	0.011261	0.011549	0.020623	-0.017508	0.29594	0.0022193	0.015481	-0.023977	-0.062471	0.035383	0.00097064	-0.25316	0.087679	-0.54108	-0.094724	-0.40709	-0.049597	0.19284	-0.012851	0.039849	-0.016417	6	-0.0061078	2.4956	0.011801	-0.12927	0.017963	0.028094	-0.68979	-0.078371	0.19421	
Amplification Peak  4 - CN values	8q24.21 	chr8:1-146274826(probes 773194:855386)               	chr8:128361183-128387571(probes 844574:844596)    	chr8:128361183-128402744(probes 844574:844600)  	0.041082	   0.99915		Actual Copy Change Given	0.0063871	2.3035	0.024076	-0.025072	0.020763	-0.037626	0.031718	0.050509	0.071556	0.041866	0.37397	-0.0021829	1.9603	0.45108	0.021603	0.022304	0.22663	-0.42123	0.438	0.19725	0.083198	-0.04211	0.44037	-0.39252	0.051879	0.42486	0.36871	-0.012731	0.0041632	0.74021	1.4498	-0.25842	0.51076	0.0093098	6	1.5059	
Amplification Peak  5 - CN values	8q24.21 	chr8:129098497-129100915(probes 845099:845103)    	chr8:129098587-129100798(probes 845100:845102)    	chr8:129045648-129101798(probes 845072:845105)  	0.045931	  0.074639		Actual Copy Change Given	0.0063871	1.1641	-0.010646	-0.025072	0.012097	-0.037626	0.031718	0.050509	0.071556	0.041866	0.37397	-0.0021829	1.9603	0.45108	0.021603	0.022304	6	-0.42123	0.438	0.19725	0.083198	-0.04211	0.44037	-0.39252	0.051879	0.42486	-0.013402	-0.012731	1.3821	0.74021	1.4498	-0.25842	0.51076	0.0093098	0.54988	0.42957	
Amplification Peak  6 - CN values	8q24.21 	chr8:129524135-129592226(probes 845483:845533)    	chr8:129527669-129591992(probes 845484:845532)    	chr8:129527669-129598971(probes 845484:845535)  	0.081818	   0.17435		Actual Copy Change Given	0.0063871	1.1641	-0.010646	-0.025072	0.012097	-0.037626	0.031718	0.050509	0.071556	6	0.37397	0.65006	0.75624	0.45108	0.021603	0.022304	0.16122	-0.42123	0.438	0.19725	0.083198	-0.04211	0.44037	-0.39252	0.051879	0.42486	-0.013402	-0.012731	0.011121	0.74021	1.4498	-0.25842	0.51076	0.0093098	0.54988	0.42957	
Amplification Peak  7 - CN values	9p24.1  	chr9:5649828-5709211(probes 860021:860042)            	chr9:5650242-5709161(probes 860022:860041)            	chr9:5593335-5782155(probes 859992:860082)          	0.019988	  0.019988		Actual Copy Change Given	0.12933	0.018243	-0.2775	-0.013024	0	0.014051	0.019223	-0.27107	0.074286	0.0083578	-0.015466	-0.01722	-0.027124	-0.031061	-0.020961	-0.0037395	-0.22706	-0.072408	-0.01037	-0.019314	-0.41948	-0.33237	-0.014778	0.034113	-0.3889	0.012097	0.045566	-0.0073513	-0.014228	0.052298	6	0.043909	6	0.013828	6	0.24373	
Amplification Peak  8 - CN values	11q13.3 	chr11:69516254-70078801(probes 1045194:1045482)    	chr11:69516399-70077506(probes 1045195:1045481)    	chr11:69408710-70427940(probes 1045172:1045706)  	0.041082	  0.041082		Actual Copy Change Given	-0.1774	-0.012639	-0.032024	0.92087	2.6309	-0.63718	0	0.21729	0.0041836	-0.034175	0.0079175	0.69451	0.0040243	-0.67433	-0.0062286	-0.81137	0.20511	-0.10946	0.78678	-0.17703	-0.31984	-0.34744	-0.29035	-0.40387	0.076776	-0.028355	-0.10893	0.011801	-0.13652	0.022427	-0.12565	-0.26829	5.8562	-0.67113	-0.027904	-0.03817	
Amplification Peak  9 - CN values	11q22.1 	chr11:101256134-101818609(probes 1064825:1065101)	chr11:101256452-101816296(probes 1064826:1065100)	chr11:99389996-104344309(probes 1063368:1066877)	0.00020212	 0.0027819		Actual Copy Change Given	-0.1774	-0.23326	0.61045	6	-0.51589	-0.64311	0	2.0894	1.2201	-0.60987	-0.60138	3.5864	-0.72553	-0.61928	-0.28798	-0.83543	0.18271	-0.47723	-0.66448	-0.13419	-0.34721	-0.28822	-0.29035	-0.40387	-0.012512	-0.064911	1.4269	-0.00887	0.52066	6	-0.058731	-0.26829	-0.81201	-0.65873	-0.028177	-0.03817	
Amplification Peak 10 - CN values	13q22.1 	chr13:73093889-73119658(probes 1199307:1199320)    	chr13:73095348-73119188(probes 1199308:1199319)    	chr13:73095348-73120584(probes 1199308:1199322)  	0.071279	  0.071279		Actual Copy Change Given	-0.11939	-0.11277	-0.012989	-0.036265	-0.0063668	-0.26637	-0.030077	-0.37065	-0.03052	6	0.47787	1.6944	-0.038578	-0.047371	-0.026167	-0.0023553	0.1823	-0.1391	-0.025376	-0.13186	-0.16447	0.28661	0.059825	0.051107	-0.039195	-0.052399	-0.45211	-0.014383	-0.0092666	0.0097101	1.3253	-0.28382	-0.74974	-0.64809	-0.025507	-0.44091	
Amplification Peak 11 - CN values	16p13.13	chr16:11785794-11835481(probes 1322892:1322918)    	chr16:11787909-11835418(probes 1322893:1322917)    	chr16:11783288-11985008(probes 1322891:1322943)  	0.037252	  0.037252		Actual Copy Change Given	0.074408	0.21745	-0.24764	0.039337	0.0056919	0.023987	0.0063871	-0.082004	0.054112	-0.065425	-0.017391	-0.028775	-0.011198	6	0.34242	0.0012481	-0.28828	-0.37516	-0.03681	0.11125	0.1255	6	-0.00097017	-0.41113	-0.0028455	0.033972	-0.029721	0.04796	-0.0019399	0.032121	-0.0059522	0.049398	-0.035551	-0.00041585	-0.084355	0.53011	
Amplification Peak 12 - CN values	20q11.21	chr20:26020583-29820251(probes 1487763:1487995)    	chr20:29339934-29538710(probes 1487787:1487873)    	chr20:26021581-30439475(probes 1487764:1488277)  	0.00647	   0.00647		Actual Copy Change Given	1.0496	2.231	4.5801	0.014051	0.51682	0.017824	0.015308	0.088403	0.003628	0.36726	0.00069327	-0.029005	0.016194	0.94	-0.0072081	0.039337	0.20266	0.43446	-0.019452	-0.01409	1.0455	0.29358	1.2241	-0.032041	0.80295	0.60539	0.0033299	0.023548	6	0.034377	0	0.081755	2.1054	-0.0015243	1.2486	0.30314	
Amplification Peak 13 - CN values	21q22.2 	chr21:38710567-39610234(probes 1525539:1526365)    	chr21:38710675-39602792(probes 1525540:1526364)    	chr21:38710675-39615492(probes 1525540:1526367)  	0.064467	  0.064467		Actual Copy Change Given	0.029888	-0.28596	-0.29721	-0.80053	0.0051359	0.022725	0.012237	-0.12836	0.012118	0.021358	0.012934	1.8875	0.0080567	0.48512	-0.0033243	0.012795	-0.24892	0.015232	0.0043021	0.32962	0.59045	-0.19224	0.43648	-0.012628	0.17414	0.56383	0.039195	0.018505	0.0077783	-0.16346	0.023005	0.077749	6	0.053521	-0.040711	-0.37842	
Deletion Peak  1 - CN values	1p36.22	chr1:1-222417645(probes 1:112580)                 	chr1:8841982-12192346(probes 3217:4718)              	chr1:8813396-12322682(probes 3174:4767)              	0.12708	    0.12708		Actual Copy Change Given	0.35072	0.13583	0.00458	-0.74312	0.024829	0.040751	0.019503	-0.075478	-0.0051024	-0.012002	0.54912	0.015021	-0.0092666	0.53664	0.74994	0.011539	-0.059205	-0.13484	-0.70541	0.49545	-0.40142	-0.64274	0.29104	0.29772	0.20816	0.082476	-0.035233	0.030855	-0.013815	0.026215	-0.80127	0.44884	-0.074511	0.040326	-0.15101	0.088113	
Deletion Peak  2 - CN values	2q37.1 	chr2:213855358-242951149(probes 247376:264000)  	chr2:232002030-235075256(probes 258260:259891)    	chr2:198640417-242951149(probes 238505:264000)    	2.2714e-05	 2.2714e-05		Actual Copy Change Given	-0.27488	-0.43366	-0.64668	-0.82399	-0.53835	-0.64874	-0.31844	-0.035721	-0.4131	-0.058171	-0.012162	-0.79066	0.0011093	0.50172	-0.018765	-0.83914	-0.017573	-0.01333	-0.021235	-0.18282	0.020623	0.077661	-0.039529	-0.071472	0.07275	-0.037082	-0.46844	-0.13834	-0.087447	-0.82002	-0.80565	-0.25165	-0.95411	0.0043021	-0.05006	-0.060883	
Deletion Peak  3 - CN values	3p22.1 	chr3:40553687-42109081(probes 290041:291039)      	chr3:41214111-41262696(probes 290468:290615)        	chr3:41237491-41237645(probes 290542:290543)        	0.079247	   0.079247		Actual Copy Change Given	-0.224	0.064225	-0.58503	-0.75668	0.0049969	-1.0979	-0.3071	-0.019966	-0.016134	-0.59787	-0.59561	-0.72462	-0.0062286	-0.053548	0.38915	-0.79703	0.21092	0.001803	0.0062481	0.16305	-0.37493	0.22947	0.0022193	-0.78959	-0.64034	0.013772	-0.46961	0.003729	-0.59507	-0.030148	-0.75752	-0.59224	0.040079	-0.66235	0.05143	-0.39452	
Deletion Peak  4 - CN values	3p14.2 	chr3:59009803-61522370(probes 299513:301736)      	chr3:59706800-61213257(probes 300048:301538)        	chr3:60301849-60737236(probes 300783:301204)        	1.2157e-07	 1.2157e-07		Actual Copy Change Given	-0.224	0.064225	-0.56892	-0.81199	0.0049969	-0.64057	-0.31085	-0.43507	-0.016134	-0.62081	-0.61249	-0.74863	-0.0062286	-0.077987	0.36248	-0.86499	0.20868	0.001803	-0.71986	0.16305	-0.37493	0.22068	0.0022193	-0.80393	-1.5	0.00458	-0.48116	0.003729	-0.61676	-0.0080418	-0.75426	-0.6314	0.10495	-0.66642	0.05143	-0.40296	
Deletion Peak  5 - CN values	4q32.3 	chr4:167241131-174329125(probes 469835:473841)  	chr4:169248209-171257759(probes 470782:472053)    	chr4:167710153-172819579(probes 470086:473005)    	0.12708	    0.16217		Actual Copy Change Given	-0.038986	-0.32356	-0.55296	-0.82798	-0.011749	-0.015329	-0.026441	0.066959	-0.02601	-0.012415	-0.00069303	-0.72391	-0.030677	-0.034334	0.010564	-0.018765	0.1987	-0.026577	0.0027745	0	-1.4492	0.0065262	-0.0060904	-0.34331	-0.67605	0.40609	-0.44803	-0.016548	-0.017254	-0.00029472	0.73227	0.042307	-0.049255	-0.69042	0.19943	-0.094988	
Deletion Peak  6 - CN values	4q35.1 	chr4:174672203-191273063(probes 474010:483960)  	chr4:183476894-184003692(probes 479827:480193)    	chr4:183716250-183724948(probes 480011:480012)    	0.077278	    0.15258		Actual Copy Change Given	-0.039937	-0.34366	-0.58422	-0.81876	-0.010646	-0.015329	-0.026441	0.008892	-0.027378	-0.012415	-0.010922	-0.75268	0.011958	-0.67369	-0.019589	-0.043737	-0.7499	-0.03245	0.0027745	0	-0.37031	-0.023172	-0.007472	-0.38235	-0.65608	0.4502	-0.47035	-0.016548	-0.024251	-0.034207	0.66993	0.026652	-0.11897	-0.70675	0.17563	-0.11741	
Deletion Peak  7 - CN values	5q12.1 	chr5:1-180857866(probes 483961:586809)             	chr5:59816705-60181076(probes 518140:518321)        	chr5:59463643-60152369(probes 517988:518307)        	0.20931	    0.21755		Actual Copy Change Given	-0.019314	-0.68588	0.060219	-0.81745	-0.53571	-0.074811	-0.015466	-0.26252	-0.41727	0.0021032	-0.011611	-0.73088	0.027778	-0.044797	0.017684	-0.85003	-0.25001	0.2877	0.011539	-0.10408	-0.40859	-0.0052529	-0.043093	0.44003	-0.68875	-0.047801	-0.41641	-0.010663	-0.59078	-0.37675	-0.40041	0.065656	-0.75631	-0.68174	0.013953	-0.41805	
Deletion Peak  8 - CN values	6q26   	chr6:161613089-163073197(probes 681089:682185)  	chr6:161687510-163073197(probes 681127:682185)    	chr6:162267059-162279324(probes 681657:681658)    	0.0024205	  0.0024205		Actual Copy Change Given	-0.24229	-0.027535	-0.61094	0.0051825	-0.022058	-0.00041585	-0.31902	-0.016962	-0.011591	-0.6064	-0.65024	0.0068384	-0.7999	0.45686	0.33027	-0.80642	-0.7398	-0.38369	0.0086135	0.14015	0.48733	-0.038034	-0.011198	0.45187	0.066438	-0.023977	0.033217	-0.0022343	0.0038854	0.011243	-0.72216	0.016425	-0.7825	-0.0038898	-0.067176	-0.30004	
Deletion Peak  9 - CN values	7q31.33	chr7:109385398-154370149(probes 745131:770742)  	chr7:126484307-127045443(probes 754738:755149)    	chr7:125971340-127074053(probes 754433:755166)    	0.14687	    0.15258		Actual Copy Change Given	0.026514	-0.020001	-0.0029091	-0.80476	0.0022193	0.0027745	0.018803	-0.082934	-0.0074517	0.37005	-0.0015243	-0.73378	-0.73099	-0.034607	0.00597	0.03031	-0.2487	-0.011611	0.72603	-0.10618	-0.38862	-0.0029091	0.17513	0.050108	-0.27673	-0.032041	0.54259	-0.0061078	0.020343	-0.00084908	-0.01849	0.08392	0.15416	-1.449	-0.041482	0.13895	
Deletion Peak 10 - CN values	9p24.3 	chr9:1-140273252(probes 855387:926613)             	chr9:1-3892074(probes 855387:858498)                   	chr9:324525-326069(probes 855388:855389)                	0.23217	    0.23217		Actual Copy Change Given	0.12933	-0.0060904	-0.2775	-0.013024	0	0.014051	0.019223	-0.27906	0.074286	0.0083578	0.017824	-0.01722	0.0098669	-0.031061	-0.0077482	-0.0037395	-0.27075	-0.11469	-0.01037	-0.019314	-0.41948	-0.30639	-0.014778	0.016159	-0.3889	0.012097	0.045566	-0.0073513	-0.014228	0.0045625	-1.4297	0.043909	-0.89448	0.053664	6	0.23581	
Deletion Peak 11 - CN values	10q23.2	chr10:89302988-89611040(probes 978707:978921)    	chr10:89567192-89601600(probes 978895:978915)      	chr10:89370298-89611040(probes 978753:978921)      	0.012697	   0.012697		Actual Copy Change Given	0.0307	-0.23826	-0.26673	-0.78466	-0.0070576	0.0054139	0.0066653	-0.12434	0.040489	-0.051834	-0.58196	0.015202	0.024268	-0.049426	0.018103	0.019643	0.41621	0.2321	-0.017803	-0.13549	-0.41319	-0.2875	0.0083351	-0.79561	0.073756	0.016286	-0.017529	0.014452	-0.57279	0.078564	-0.00097017	-0.10555	0.11642	-1.419	-0.050195	-0.03286	
Deletion Peak 12 - CN values	10q26.2	chr10:97355027-135374737(probes 983800:1008358) 	chr10:128822744-128886884(probes 1004494:1004528)	chr10:128771097-129072991(probes 1004463:1004673)	0.19982	    0.19982		Actual Copy Change Given	0.0307	0.61625	-0.26456	-0.80119	0.00041593	-0.012576	0.0066653	-0.12434	-0.028745	-0.12328	-0.62493	-0.034462	-0.086518	-0.049426	-0.044274	-0.85501	0.31827	0.2321	-0.017803	-0.13795	-0.96917	-0.32356	-0.0067813	-0.81721	0.10168	0.016766	-0.088091	0.014452	0	0.0024794	-0.11783	-0.10555	0.017998	-0.69203	-0.15153	-0.075078	
Deletion Peak 13 - CN values	11q14.2	chr11:78825689-90243998(probes 1050181:1057066)  	chr11:85008161-85669822(probes 1053910:1054199)    	chr11:84685214-85680692(probes 1053772:1054208)    	0.02917	     0.1053		Actual Copy Change Given	-0.1774	0.0095883	0.010285	0.65259	-0.51135	-1.1054	0	0.39629	0.015887	-0.021487	0.016845	0.70012	-0.73301	-0.59027	-0.28798	-0.81236	0.18745	-0.47078	-0.69679	-0.13962	-0.34721	-0.34744	-0.29035	-0.40387	0.011603	-0.028355	-0.18974	0.011801	0.46923	0.022427	-0.058731	-0.26829	-0.80796	-0.67113	-0.027904	-0.03817	
Deletion Peak 14 - CN values	11q25  	chr11:17358096-134452384(probes 1018821:1086970)	chr11:128208647-133791406(probes 1082953:1086864)	chr11:103700186-134452384(probes 1066465:1086970)	0.0010424	  0.0024205		Actual Copy Change Given	-0.1774	-0.23326	-0.65417	-0.82855	-0.51589	-0.64311	0.0055529	-0.47986	-0.40505	-0.60987	-0.60138	-0.82544	-0.77965	-0.64318	-0.38663	-0.86402	0.13813	-0.51661	-0.74621	-0.17525	-0.34721	-0.35965	-0.29035	-0.43756	0.051026	-0.035585	-0.52369	0.010606	-0.62598	-0.77376	-0.17084	-0.26829	-0.96134	-0.70756	-0.11374	-0.03817	
Deletion Peak 15 - CN values	13q32.3	chr13:1-114142980(probes 1165158:1225338)       	chr13:99978652-99985257(probes 1215707:1215709)    	chr13:99983003-99987313(probes 1215709:1215710)    	0.23222	    0.23217		Actual Copy Change Given	-0.11939	-0.017803	-0.0088526	-0.074788	-0.0063668	-0.20622	-0.030077	0.0024774	-0.03052	0.090889	-0.20995	-0.014867	-0.038578	-0.047371	-0.038986	-0.87307	0.1823	-0.1391	-0.025376	-0.13186	-0.17316	0.30889	0.45105	0.035806	-0.039739	-0.052399	0.013213	-0.00043334	-0.0092666	-0.030967	1.3307	-0.31973	-1.29	-0.68126	-0.025507	0.2456	
Deletion Peak 16 - CN values	20p12.1	chr20:6695556-29311252(probes 1474457:1487771)    	chr20:13913126-15984135(probes 1479225:1480528)    	chr20:15336361-15337545(probes 1479877:1479878)    	0.18818	    0.17837		Actual Copy Change Given	-0.13962	-0.025103	-0.024798	0.014051	-0.54189	0.017824	0.015308	0.11111	-0.70996	0.35498	0.0081959	-0.029005	0.68124	-0.03715	-0.0072081	0.008892	0.20266	-0.30932	-0.0047079	-0.0088526	1.0455	0.29358	1.2671	-0.00055444	0.73652	0.60539	0.00041593	0.018505	0.22607	-0.0029702	0	0.031721	-0.89187	0.0069435	1.3208	0.30314	
Deletion Peak 17 - CN values	21q21.1	chr21:18174997-25682320(probes 1511458:1516355)  	chr21:21026751-21156833(probes 1513218:1513242)    	chr21:20354879-21459240(probes 1512836:1513493)    	0.081912	   0.079247		Actual Copy Change Given	-0.044686	-0.20336	-0.29721	-0.83599	0.0051359	-0.0084385	-0.048338	-0.0067813	0.012118	0.019525	0.0012563	-0.060984	0.0080567	0.48512	-0.0033243	0.012795	-0.24892	0.015232	-0.0055725	0.3348	0.59045	-0.25764	0.030998	0.055373	-0.13426	0.45717	-0.8865	-0.0088732	0.0077783	-0.54251	0.068808	0.033408	-1.5	0.080745	0.042916	-0.41553	
