Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]
Gistic2_Analysis1.seg_file	KIRP.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.seg.txt	gdac.broadinstitute.org___DELETED__20929431_KIRP.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.Level_3.2011123000.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	amp_genes.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.seg_file	KIRP.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.seg.txt	gdac.broadinstitute.org___DELETED__20929431_KIRP.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.Level_3.2011123000.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	del_genes.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.seg_file	KIRP.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.seg.txt	gdac.broadinstitute.org___DELETED__20929431_KIRP.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.Level_3.2011123000.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	table_amp.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.seg_file	KIRP.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.seg.txt	gdac.broadinstitute.org___DELETED__20929431_KIRP.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.Level_3.2011123000.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	table_del.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.seg_file	KIRP.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.seg.txt	gdac.broadinstitute.org___DELETED__20929431_KIRP.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.Level_3.2011123000.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	all_data_by_genes.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.seg_file	KIRP.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.seg.txt	gdac.broadinstitute.org___DELETED__20929431_KIRP.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.Level_3.2011123000.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	all_lesions.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.seg_file	KIRP.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.seg.txt	gdac.broadinstitute.org___DELETED__20929431_KIRP.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.Level_3.2011123000.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	all_thresholded.by_genes.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.seg_file	KIRP.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.seg.txt	gdac.broadinstitute.org___DELETED__20929431_KIRP.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.Level_3.2011123000.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	amp_qplot.pdf	GISTIC	Level_4	pdf	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.seg_file	KIRP.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.seg.txt	gdac.broadinstitute.org___DELETED__20929431_KIRP.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.Level_3.2011123000.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	amp_qplot.v2.pdf	GISTIC	Level_4	pdf	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.seg_file	KIRP.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.seg.txt	gdac.broadinstitute.org___DELETED__20929431_KIRP.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.Level_3.2011123000.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	amp_qplot.png	GISTIC	Level_4	png	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.seg_file	KIRP.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.seg.txt	gdac.broadinstitute.org___DELETED__20929431_KIRP.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.Level_3.2011123000.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	broad_significance_results.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.seg_file	KIRP.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.seg.txt	gdac.broadinstitute.org___DELETED__20929431_KIRP.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.Level_3.2011123000.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	broad_values_by_arm.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.seg_file	KIRP.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.seg.txt	gdac.broadinstitute.org___DELETED__20929431_KIRP.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.Level_3.2011123000.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	del_qplot.v2.pdf	GISTIC	Level_4	pdf	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.seg_file	KIRP.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.seg.txt	gdac.broadinstitute.org___DELETED__20929431_KIRP.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.Level_3.2011123000.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	del_qplot.pdf	GISTIC	Level_4	pdf	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.seg_file	KIRP.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.seg.txt	gdac.broadinstitute.org___DELETED__20929431_KIRP.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.Level_3.2011123000.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	del_qplot.png	GISTIC	Level_4	png	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.seg_file	KIRP.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.seg.txt	gdac.broadinstitute.org___DELETED__20929431_KIRP.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.Level_3.2011123000.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	focal_data_by_genes.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.seg_file	KIRP.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.seg.txt	gdac.broadinstitute.org___DELETED__20929431_KIRP.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.Level_3.2011123000.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	focal_input.seg.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.seg_file	KIRP.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.seg.txt	gdac.broadinstitute.org___DELETED__20929431_KIRP.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.Level_3.2011123000.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	freqarms_vs_ngenes.pdf	GISTIC	Level_4	pdf	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.seg_file	KIRP.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.seg.txt	gdac.broadinstitute.org___DELETED__20929431_KIRP.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.Level_3.2011123000.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	scores.gistic	GISTIC	Level_4	text	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.seg_file	KIRP.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.seg.txt	gdac.broadinstitute.org___DELETED__20929431_KIRP.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.Level_3.2011123000.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	raw_copy_number.png	GISTIC	Level_4	png	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.seg_file	KIRP.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.seg.txt	gdac.broadinstitute.org___DELETED__20929431_KIRP.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.Level_3.2011123000.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	arraylistfile.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.seg_file	KIRP.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.seg.txt	gdac.broadinstitute.org___DELETED__20929431_KIRP.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg.Level_3.2011123000.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	report.html	report	Level_4	html	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.markers_file	broad.probes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	amp_genes.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.markers_file	broad.probes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	del_genes.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.markers_file	broad.probes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	table_amp.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.markers_file	broad.probes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	table_del.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.markers_file	broad.probes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	all_data_by_genes.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.markers_file	broad.probes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	all_lesions.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.markers_file	broad.probes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	all_thresholded.by_genes.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.markers_file	broad.probes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	amp_qplot.pdf	GISTIC	Level_4	pdf	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.markers_file	broad.probes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	amp_qplot.v2.pdf	GISTIC	Level_4	pdf	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.markers_file	broad.probes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	amp_qplot.png	GISTIC	Level_4	png	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.markers_file	broad.probes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	broad_significance_results.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.markers_file	broad.probes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	broad_values_by_arm.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.markers_file	broad.probes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	del_qplot.v2.pdf	GISTIC	Level_4	pdf	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.markers_file	broad.probes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	del_qplot.pdf	GISTIC	Level_4	pdf	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.markers_file	broad.probes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	del_qplot.png	GISTIC	Level_4	png	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.markers_file	broad.probes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	focal_data_by_genes.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.markers_file	broad.probes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	focal_input.seg.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.markers_file	broad.probes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	freqarms_vs_ngenes.pdf	GISTIC	Level_4	pdf	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.markers_file	broad.probes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	scores.gistic	GISTIC	Level_4	text	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.markers_file	broad.probes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	raw_copy_number.png	GISTIC	Level_4	png	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.markers_file	broad.probes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	arraylistfile.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.markers_file	broad.probes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	report.html	report	Level_4	html	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.refgene_file	hg18_with_miR_20091116.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	amp_genes.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.refgene_file	hg18_with_miR_20091116.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	del_genes.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.refgene_file	hg18_with_miR_20091116.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	table_amp.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.refgene_file	hg18_with_miR_20091116.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	table_del.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.refgene_file	hg18_with_miR_20091116.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	all_data_by_genes.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.refgene_file	hg18_with_miR_20091116.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	all_lesions.conf_99.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.refgene_file	hg18_with_miR_20091116.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	all_thresholded.by_genes.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.refgene_file	hg18_with_miR_20091116.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	amp_qplot.pdf	GISTIC	Level_4	pdf	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.refgene_file	hg18_with_miR_20091116.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	amp_qplot.v2.pdf	GISTIC	Level_4	pdf	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.refgene_file	hg18_with_miR_20091116.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	amp_qplot.png	GISTIC	Level_4	png	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.refgene_file	hg18_with_miR_20091116.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	broad_significance_results.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.refgene_file	hg18_with_miR_20091116.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	broad_values_by_arm.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.refgene_file	hg18_with_miR_20091116.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	del_qplot.v2.pdf	GISTIC	Level_4	pdf	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.refgene_file	hg18_with_miR_20091116.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	del_qplot.pdf	GISTIC	Level_4	pdf	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.refgene_file	hg18_with_miR_20091116.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	del_qplot.png	GISTIC	Level_4	png	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.refgene_file	hg18_with_miR_20091116.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	focal_data_by_genes.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.refgene_file	hg18_with_miR_20091116.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	focal_input.seg.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.refgene_file	hg18_with_miR_20091116.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	freqarms_vs_ngenes.pdf	GISTIC	Level_4	pdf	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.refgene_file	hg18_with_miR_20091116.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	scores.gistic	GISTIC	Level_4	text	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.refgene_file	hg18_with_miR_20091116.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	raw_copy_number.png	GISTIC	Level_4	png	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.refgene_file	hg18_with_miR_20091116.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	arraylistfile.txt	GISTIC	Level_4	text	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
Gistic2_Analysis1.refgene_file	hg18_with_miR_20091116.mat	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00293:90	CopyNumber_Gistic2_2012021700	report.html	report	Level_4	html	gdac.broadinstitute.org_KIRP.CopyNumber_Gistic2.Level_4.2012021700.0.0
