Summary of TCGA Tumor Data
Ingested into Broad GDAC Pipeline
2012_02_17 analyses Run
| Tumor | BCR | Clinical | CN | Methylation | mRNA | mRNAseq | miR | miRseq | MAF
|
|
| BLCA | 89 | 58 | 35 | 38 | 0 | 0 | 0 | 54 | 0 |
| BRCA | 864 | 844 | 781 | 808 | 529 | 751 | 0 | 781 | 507 |
| CESC | 99 | 12 | 36 | 0 | 0 | 0 | 0 | 8 | 0 |
| COADREAD | 591 | 586 | 565 | 236 | 224 | 83 | 0 | 255 | 224 |
| DLBC | 10 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| GBM | 596 | 561 | 537 | 287 | 542 | 0 | 491 | 0 | 276 |
| HNSC | 294 | 206 | 165 | 0 | 0 | 13 | 0 | 89 | 0 |
| KIRC | 502 | 502 | 489 | 391 | 72 | 469 | 0 | 463 | 327 |
| KIRP | 129 | 84 | 43 | 36 | 16 | 14 | 0 | 16 | 0 |
| LAML | 202 | 200 | 0 | 192 | 0 | 179 | 0 | 187 | 199 |
| LGG | 119 | 103 | 80 | 0 | 27 | 0 | 0 | 30 | 0 |
| LIHC | 84 | 47 | 53 | 0 | 0 | 17 | 0 | 28 | 0 |
| LNNH | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| LUAD | 353 | 269 | 205 | 127 | 32 | 0 | 0 | 95 | 147 |
| LUSC | 283 | 266 | 211 | 133 | 154 | 220 | 0 | 202 | 178 |
| OV | 592 | 580 | 547 | 551 | 568 | 0 | 564 | 46 | 316 |
| PAAD | 38 | 0 | 14 | 0 | 0 | 0 | 0 | 0 | 0 |
| PRAD | 153 | 0 | 82 | 0 | 0 | 0 | 0 | 63 | 0 |
| SKCM | 240 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| STAD | 149 | 148 | 134 | 118 | 0 | 58 | 0 | 125 | 0 |
| THCA | 251 | 54 | 85 | 0 | 0 | 0 | 0 | 45 | 0 |
| UCEC | 462 | 392 | 363 | 373 | 54 | 266 | 0 | 359 | 239 |
| Totals | 6102 | 4912 | 4425 | 3290 | 2218 | 2070 | 1055 | 2846 | 2413 |