Unique Name	Descriptor	Wide Peak Limits	Peak Limits	Region Limits	q values	Residual q values after removing segments shared with higher peaks	Broad or Focal	Amplitude Threshold	TCGA-BL-A0C8-01A-11D-A10T-01	TCGA-BL-A13I-01A-11D-A13V-01	TCGA-BL-A13J-01A-11D-A10T-01	TCGA-BT-A0S7-01A-11D-A10T-01	TCGA-BT-A0YX-01A-11D-A10T-01	TCGA-BT-A20J-01A-11D-A14V-01	TCGA-BT-A20N-01A-11D-A14V-01	TCGA-BT-A20O-01A-21D-A14V-01	TCGA-BT-A20P-01A-11D-A14V-01	TCGA-BT-A20Q-01A-11D-A14V-01	TCGA-BT-A20R-01A-12D-A16M-01	TCGA-BT-A20T-01A-11D-A14V-01	TCGA-BT-A20U-01A-11D-A14V-01	TCGA-BT-A20V-01A-11D-A14V-01	TCGA-BT-A20W-01A-21D-A14V-01	TCGA-BT-A20X-01A-11D-A16M-01	TCGA-C4-A0F0-01A-12D-A10T-01	TCGA-C4-A0F6-01A-11D-A10T-01	TCGA-CF-A1HR-01A-11D-A13V-01	TCGA-CF-A1HS-01A-11D-A13V-01	TCGA-CF-A27C-01A-11D-A16M-01	TCGA-CU-A0YN-01A-21D-A10T-01	TCGA-CU-A0YO-01A-11D-A10T-01	TCGA-CU-A0YR-01A-12D-A10T-01	TCGA-DK-A1A3-01A-11D-A13V-01	TCGA-DK-A1A5-01A-11D-A13V-01	TCGA-DK-A1A6-01A-11D-A13V-01	TCGA-DK-A1A7-01A-11D-A13V-01	TCGA-DK-A1AA-01A-11D-A13V-01	TCGA-DK-A1AB-01A-11D-A13V-01	TCGA-DK-A1AC-01A-11D-A13V-01	TCGA-DK-A1AD-01A-11D-A13V-01	TCGA-DK-A1AE-01A-11D-A13V-01	TCGA-DK-A1AF-01A-11D-A13V-01	TCGA-DK-A1AG-01A-11D-A13V-01	
Amplification Peak  1	1p34.2  	chr1:39300820-41999023(probes 18537:19941)      	chr1:39775591-40642871(probes 18754:19188)      	chr1:39303861-40858512(probes 18538:19294)      	0.052209	  0.052209		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	2	0	1	0	0	0	0	0	
Amplification Peak  2	1q23.3  	chr1:159160335-159567617(probes 72727:72911)  	chr1:159300324-159365105(probes 72792:72821)  	chr1:156339331-164000106(probes 70842:76292)  	0.001261	  0.001261		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	2	0	2	0	0	1	2	0	0	0	0	1	0	1	2	0	0	0	0	1	0	0	0	2	0	1	0	2	0	0	2	2	0	0	0	
Amplification Peak  3	3p25.2  	chr3:11691872-12831403(probes 272529:273284)    	chr3:11694051-12830692(probes 272530:273283)    	chr3:11694051-12835987(probes 272530:273286)    	0.052209	  0.052209		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	2	0	1	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	2	0	1	2	2	0	0	2	1	0	0	0	
Amplification Peak  4	4p16.3  	chr4:1401560-2593900(probes 378022:378313)        	chr4:1402013-2199232(probes 378023:378165)        	chr4:1402013-2207745(probes 378023:378168)        	0.17753	   0.17753		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	2	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	1	1	0	0	1	0	0	0	0	1	1	0	0	0	1	0	0	0	0	
Amplification Peak  5	6p22.3  	chr6:19833818-23096030(probes 601493:603790)    	chr6:21067987-21223002(probes 602324:602421)    	chr6:17990413-23808797(probes 600106:604303)    	9.91e-06	  9.91e-06		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	2	0	0	1	0	0	0	0	2	0	0	0	2	0	0	0	0	2	0	2	0	0	0	1	2	1	0	0	2	2	0	0	0	
Amplification Peak  6	6q21    	chr6:107205627-107666415(probes 648284:648389)	chr6:107311480-107662661(probes 648362:648388)	chr6:107311480-107671392(probes 648362:648391)	0.18071	   0.18071		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	1	0	0	0	0	
Amplification Peak  7	7p11.2  	chr7:50769929-62280486(probes 718476:722364)    	chr7:55268400-56358685(probes 721753:721919)    	chr7:55268400-56368692(probes 721753:721922)    	0.12014	   0.12014		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	1	0	1	1	0	2	2	0	0	0	0	0	0	1	1	0	0	1	0	1	0	2	1	0	0	2	0	1	0	0	1	1	0	0	0	
Amplification Peak  8	8p11.21 	chr8:41532176-42222195(probes 797042:797452)    	chr8:41948059-42218516(probes 797315:797451)    	chr8:41948059-42222478(probes 797315:797454)    	0.14031	   0.14031		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	1	0	0	0	1	0	0	0	0	2	2	0	0	0	0	0	0	0	
Amplification Peak  9	8q22.3  	chr8:99524488-103789516(probes 827744:829969)  	chr8:101766119-102736706(probes 828701:829332)	chr8:99525659-103792072(probes 827745:829971)  	0.012482	  0.031997		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	2	0	1	0	0	1	1	0	0	0	0	0	0	1	2	1	2	1	0	1	0	1	0	2	0	1	2	2	0	0	2	1	2	0	0	
Amplification Peak 10	8q24.21 	chr8:127650793-129858315(probes 844032:845696)	chr8:128281777-128491913(probes 844524:844670)	chr8:127651010-129862456(probes 844033:845698)	0.032261	     0.183		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	1	0	1	0	2	0	1	0	0	0	0	0	0	1	2	1	2	1	0	1	0	1	0	2	0	1	1	1	0	0	1	1	1	0	0	
Amplification Peak 11	9p21.3  	chr9:20000313-20943334(probes 870612:871280)    	chr9:20000397-20943232(probes 870613:871279)    	chr9:20000397-20943637(probes 870613:871282)    	0.050945	  0.050945		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	1	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	
Amplification Peak 12	11q13.2 	chr11:68876335-69704851(probes 1044831:1045326)	chr11:69108831-69135020(probes 1044991:1045017)	chr11:67716184-69705791(probes 1044235:1045328)	0.021537	  0.021537		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	1	0	2	2	0	0	0	0	0	0	0	0	
Amplification Peak 13	12p13.33	chr12:539572-4221251(probes 1087084:1089344)      	chr12:1265436-1697305(probes 1087342:1087583)    	chr12:1265436-1698787(probes 1087342:1087586)    	0.12918	   0.12918		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	1	0	0	0	0	2	1	0	1	0	0	0	0	2	2	0	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	
Amplification Peak 14	12q15   	chr12:67407170-68461877(probes 1125163:1125885)	chr12:67448769-68453430(probes 1125185:1125884)	chr12:67232296-68710035(probes 1125073:1126060)	0.001944	  0.001944		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	1	0	0	2	0	1	0	0	2	0	0	0	0	1	0	0	0	2	0	0	0	0	0	1	0	1	1	2	0	0	1	0	0	0	0	
Amplification Peak 15	17q11.2 	chr17:28028389-28283153(probes 1373489:1373620)	chr17:28029339-28275073(probes 1373490:1373619)	chr17:28029339-28286086(probes 1373490:1373622)	0.10187	   0.12477		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	2	2	0	0	0	1	0	0	0	
Amplification Peak 16	17q12   	chr17:35058337-35159341(probes 1377327:1377368)	chr17:35135112-35157736(probes 1377360:1377367)	chr17:35058337-35242574(probes 1377327:1377414)	0.0020227	 0.0095515		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	1	0	1	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	1	0	0	0	0	2	0	2	2	1	0	0	1	1	0	0	0	
Amplification Peak 17	19q13.13	chr19:42525035-44578035(probes 1460482:1461534)	chr19:43029423-43582697(probes 1460733:1461035)	chr19:42525085-44499063(probes 1460483:1461497)	0.028123	  0.028123		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	1	0	0	1	2	0	0	0	2	0	0	1	1	0	1	1	0	2	0	2	0	0	2	0	1	2	0	1	0	2	0	0	0	
Deletion Peak  1	2q22.1 	chr2:139248662-143354308(probes 204824:207375)   	chr2:140697535-142610745(probes 205687:206929)    	chr2:141382787-141964496(probes 206094:206438)    	0.0003466	  0.0010461		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	0	1	0	0	0	0	0	0	0	
Deletion Peak  2	2q37.1 	chr2:215984621-242951149(probes 248646:264003)   	chr2:232742158-233125795(probes 258571:258641)    	chr2:219145734-242951149(probes 250615:264003)    	0.011567	   0.015953		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	1	0	0	1	1	0	0	1	0	0	0	1	0	1	0	0	0	0	0	1	0	1	0	1	0	0	0	0	1	1	0	0	2	
Deletion Peak  3	3p14.2 	chr3:59009803-61522370(probes 299516:301739)       	chr3:59706800-61213257(probes 300051:301541)        	chr3:60315493-60316741(probes 300797:300798)        	0.046582	   0.046582		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	1	0	0	0	1	0	0	0	1	0	0	1	0	0	1	0	0	0	0	0	
Deletion Peak  4	4q22.1 	chr4:91092757-93459528(probes 427749:429036)       	chr4:91254810-92745056(probes 427837:428697)        	chr4:91782480-92256523(probes 428128:428435)        	0.0033997	  0.0033997		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	0	1	1	0	0	0	0	1	1	1	0	0	1	0	0	0	0	0	0	0	
Deletion Peak  5	5q11.2 	chr5:45730220-57785752(probes 511944:516824)       	chr5:54846932-54879896(probes 514934:514938)        	chr5:54842834-54902193(probes 514930:514946)        	0.016628	   0.053578		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	1	1	0	0	0	0	1	0	1	0	0	0	1	1	1	0	0	0	0	0	1	0	1	0	0	0	1	0	0	0	
Deletion Peak  6	5q12.2 	chr5:1-180857866(probes 483964:586812)              	chr5:63291748-63561748(probes 519775:519892)        	chr5:62314980-63522285(probes 519609:519876)        	0.015953	          1		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	1	0	0	0	0	1	1	0	0	0	0	1	0	1	0	0	0	1	1	1	0	0	0	0	0	1	0	2	0	0	0	1	0	0	0	
Deletion Peak  7	6p25.2 	chr6:1-12405964(probes 586813:596043)                	chr6:2565774-3215169(probes 588570:589068)            	chr6:2256916-2880807(probes 588303:588821)            	0.22949	    0.22949		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	1	0	0	1	1	0	0	0	0	
Deletion Peak  8	6q21   	chr6:97351134-131948859(probes 642536:662004)     	chr6:108383052-109213742(probes 648828:648829)    	chr6:108178832-109218025(probes 648683:648831)    	0.13513	    0.14829		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	1	0	0	0	0	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	1	1	0	1	0	0	1	0	0	
Deletion Peak  9	6q25.2 	chr6:153490906-155760257(probes 675975:677372)   	chr6:155094131-155200911(probes 676954:676995)    	chr6:154841711-155175371(probes 676866:676986)    	0.1177	    0.11712		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	1	0	0	0	1	0	0	0	1	0	0	0	0	1	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0	0	
Deletion Peak 10	9p21.3 	chr9:21855498-22438737(probes 871954:872303)       	chr9:21949052-21967193(probes 871978:871979)        	chr9:20651159-24290149(probes 871048:873417)        	3.1786e-32	 3.1786e-32		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	1	1	1	1	1	1	1	0	2	1	0	2	1	1	1	1	1	2	1	0	2	0	1	0	1	1	0	0	2	1	0	0	2	0	2	
Deletion Peak 11	10q26.3	chr10:121457373-133628884(probes 999122:1008241)	chr10:132775547-133003563(probes 1007702:1007878)	chr10:132882534-132883392(probes 1007791:1007792)	0.063834	   0.063834		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	
Deletion Peak 12	11p15.4	chr11:1-134452384(probes 1008363:1086973)          	chr11:5430440-5432287(probes 1010584:1010586)        	chr11:5431659-5432739(probes 1010586:1010587)        	0.23636	     0.2394		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	1	0	1	0	0	0	1	0	0	0	0	1	0	1	0	0	1	1	1	0	1	0	0	1	0	2	1	1	0	1	0	1	0	0	0	
Deletion Peak 13	15q13.3	chr15:22478867-30800105(probes 1271806:1275363)   	chr15:29144240-29146494(probes 1275108:1275109)    	chr15:29139368-29156648(probes 1275106:1275119)    	0.087731	   0.087731		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	1	0	0	1	1	0	0	0	0	0	1	0	
Deletion Peak 14	17p12  	chr17:10040108-15280519(probes 1364715:1368493)   	chr17:11439937-11823444(probes 1365725:1365992)    	chr17:10209221-16512115(probes 1364863:1368994)    	0.001221	   0.001221		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	1	0	1	1	0	1	2	0	1	0	0	0	0	1	0	1	0	1	0	0	1	0	1	1	1	0	1	1	1	0	0	0	
Amplification Peak  1 - CN values	1p34.2  	chr1:39300820-41999023(probes 18537:19941)      	chr1:39775591-40642871(probes 18754:19188)      	chr1:39303861-40858512(probes 18538:19294)      	0.052209	  0.052209		Actual Copy Change Given	-0.026167	0.012516	-0.01409	-0.19775	0.0020805	6	0.15472	-0.033677	-0.024114	0.0079175	0.3395	-0.024108	0.020203	0.024408	0.027942	-0.063683	0.13155	0.018296	-0.27722	1.5458	0.050108	0.16445	-0.059135	-0.34784	1.7876	0.053948	-0.50764	2.2088	0.01419	0.58381	0.015308	0.010006	-0.012713	-0.089831	-0.017803	
Amplification Peak  2 - CN values	1q23.3  	chr1:159160335-159567617(probes 72727:72911)  	chr1:159300324-159365105(probes 72792:72821)  	chr1:156339331-164000106(probes 70842:76292)  	0.001261	  0.001261		Actual Copy Change Given	2.8269	-0.00041585	4.8116	0.14965	0.020203	0.58632	1.2306	0.13155	-0.005814	-0.0087146	0.030591	0.63756	0.020903	0.40028	1.8643	0.19621	0.10448	-0.018411	0.027969	0.67641	-0.0098055	0.034536	0.0086135	1.4646	0.2156	0.4353	-0.010784	3.6911	0.11932	0.012934	1.6223	1.4745	-0.0026322	0.039195	-0.0081624	
Amplification Peak  3 - CN values	3p25.2  	chr3:11691872-12831403(probes 272529:273284)    	chr3:11694051-12830692(probes 272530:273283)    	chr3:11694051-12835987(probes 272530:273286)    	0.052209	  0.052209		Actual Copy Change Given	6	0.20706	0.41982	-0.053071	-0.0044312	0.0034195	0.94588	-0.019206	-0.01737	-0.0040503	0.045626	-0.082264	0.0095883	-0.48092	0.61773	-0.33524	-0.1736	0.015447	0.61106	-0.23325	-0.0036011	-0.26408	0.14682	3.4926	0.27805	0.42654	0.97564	1.5374	0.00597	-0.53299	1.1016	0.58792	-0.015054	0.0044411	-0.0016629	
Amplification Peak  4 - CN values	4p16.3  	chr4:1401560-2593900(probes 378022:378313)        	chr4:1402013-2199232(probes 378023:378165)        	chr4:1402013-2207745(probes 378023:378168)        	0.17753	   0.17753		Actual Copy Change Given	1.9326	0.016805	-0.13173	-0.06048	-0.039394	-0.32774	0.17242	-0.06048	6	0.034395	-0.25612	0.99809	-0.032587	-0.46982	-0.39873	-0.13236	0.31659	0.4016	-0.16378	-0.29709	0.85245	-0.058866	-0.19036	-0.028491	-0.080275	0.51455	0.49701	-0.49923	-0.039529	0.041175	0.41019	-0.49087	-0.073209	0.053948	-0.011887	
Amplification Peak  5 - CN values	6p22.3  	chr6:19833818-23096030(probes 601493:603790)    	chr6:21067987-21223002(probes 602324:602421)    	chr6:17990413-23808797(probes 600106:604303)    	9.91e-06	  9.91e-06		Actual Copy Change Given	0.013522	-0.0031859	0.90754	0.11697	0.0024969	0.33918	-0.17904	-0.053611	-0.085587	-0.046989	4.4451	-0.92763	0.069095	-0.16046	1.5636	-0.33685	0.13244	-0.026714	-0.10836	3.6592	0.010564	2.6441	0	-0.044686	-0.015879	0.43665	3.2982	0.5539	-0.0060904	-0.54593	5.0699	5.2421	-0.0042067	0.091106	0.020343	
Amplification Peak  6 - CN values	6q21    	chr6:107205627-107666415(probes 648284:648389)	chr6:107311480-107662661(probes 648362:648388)	chr6:107311480-107671392(probes 648362:648391)	0.18071	   0.18071		Actual Copy Change Given	-0.0058444	-0.0092666	-0.026441	0.12756	0.0019418	6	-0.17112	0.035947	0.014888	-0.012713	-0.093667	-0.83994	0.083198	-0.46227	0.00057779	0	-0.15656	-0.038071	-0.24504	0.14295	0.00083195	-0.0033243	-0.023018	0.45493	2.8994	-0.0056757	-0.53987	-0.40948	-0.010784	-0.54683	0.41116	-0.19962	0.011121	-0.096629	-0.00013862	
Amplification Peak  7 - CN values	7p11.2  	chr7:50769929-62280486(probes 718476:722364)    	chr7:55268400-56358685(probes 721753:721919)    	chr7:55268400-56368692(probes 721753:721922)    	0.12014	   0.12014		Actual Copy Change Given	0.58256	-0.0060904	0.62825	0.39878	0.0083351	1.8595	1.2192	-0.016017	-0.027808	-0.0042929	0.001803	-0.027119	0.04812	0.66586	0.41851	0.24609	-0.079742	0.65479	0.034164	0.46913	0.003191	6	0.45156	-0.21503	0.26812	2.3654	0.094637	0.39861	0.00083195	0.012097	0.37495	0.38104	0.037924	0.068091	0.0467	
Amplification Peak  8 - CN values	8p11.21 	chr8:41532176-42222195(probes 797042:797452)    	chr8:41948059-42218516(probes 797315:797451)    	chr8:41948059-42222478(probes 797315:797454)    	0.14031	   0.14031		Actual Copy Change Given	-0.31803	0.012097	0.20671	-0.051316	0.0015255	-0.01904	0.48389	-0.034086	-0.026304	-0.018353	0.00027728	-0.088167	-0.006505	0.020063	3.797	0.062181	-0.57397	0.67957	0.019693	-0.17525	0.1851	0.3285	-0.0096806	-0.34287	-0.37932	-0.86105	1.8809	4.8771	0.0020805	0.0018872	0.025952	0.13273	-0.016154	0.0083351	0.010146	
Amplification Peak  9 - CN values	8q22.3  	chr8:99524488-103789516(probes 827744:829969)  	chr8:101766119-102736706(probes 828701:829332)	chr8:99525659-103792072(probes 827745:829971)  	0.012482	  0.031997		Actual Copy Change Given	2.2916	-0.0066432	0.86257	-0.053746	0.1283	0.33691	0.63573	-0.00055444	-0.012162	-0.018353	-0.0085766	0.097077	0.0058309	0.78775	1.4453	0.36152	0.92006	0.32737	0.0034784	0.60666	0.19284	0.3285	-0.026304	3.003	0.19372	0.41949	5.6005	3.2126	0.0098525	0.003191	0.92614	0.51751	1.4639	-0.0036011	0.032422	
Amplification Peak 10 - CN values	8q24.21 	chr8:127650793-129858315(probes 844032:845696)	chr8:128281777-128491913(probes 844524:844670)	chr8:127651010-129862456(probes 844033:845698)	0.032261	     0.183		Actual Copy Change Given	0.52328	-0.00013862	0.80383	-0.04577	2.3454	0.25918	0.63573	-0.026304	-0.016841	0.026092	0	0.13466	-0.00055444	0.84672	1.3017	0.38091	6	0.31798	0.014659	0.6513	0.20137	0.31209	-0.012851	3.402	0.16415	0.42452	0.45717	0.39181	0.012655	0.032563	0.76958	0.62733	0.75586	-0.0069195	0.004719	
Amplification Peak 11 - CN values	9p21.3  	chr9:20000313-20943334(probes 870612:871280)    	chr9:20000397-20943232(probes 870613:871279)    	chr9:20000397-20943637(probes 870613:871282)    	0.050945	  0.050945		Actual Copy Change Given	-0.44448	-0.68077	0.0070826	0.46331	-0.46685	-0.31167	-0.57173	0.024548	6	-0.64684	-0.02384	-0.70255	-0.01354	6	-0.59037	-0.070516	-0.37136	-0.40878	-0.37905	-0.057385	-0.87385	0.11213	-0.30909	0.2958	-0.70091	-0.399	-0.031632	-0.058731	-1.5	-0.55096	0.82706	0.3766	0.0044411	-0.15208	-0.93677	
Amplification Peak 12 - CN values	11q13.2 	chr11:68876335-69704851(probes 1044831:1045326)	chr11:69108831-69135020(probes 1044991:1045017)	chr11:67716184-69705791(probes 1044235:1045328)	0.021537	  0.021537		Actual Copy Change Given	0.70026	0.035383	0.84672	0.17151	0.011818	-0.031632	0.26718	-0.06652	0.0013868	0.0098669	0.014888	0.017689	-0.0063668	-0.46525	0.10631	0.43651	0.04883	0.13302	0.05856	0.23194	0.024548	0.34551	0.12167	0.35349	0.24544	6	6	-0.11822	0.004719	0.039761	-0.039394	-0.34847	-0.014366	0.033267	-0.032178	
Amplification Peak 13 - CN values	12p13.33	chr12:539572-4221251(probes 1087084:1089344)      	chr12:1265436-1697305(probes 1087342:1087583)    	chr12:1265436-1698787(probes 1087342:1087586)    	0.12918	   0.12918		Actual Copy Change Given	0.3669	0.011818	-0.060748	0.025952	0.010564	3.1369	0.78632	-0.075878	0.82941	0.087534	0.010842	-0.0026268	-0.013127	3.8661	4.8079	0.21379	0.17151	-0.0063668	0.071299	0.27774	0.019643	0.3161	0.28137	0.50967	-0.10303	0.058081	0.47426	-0.0048461	0.017544	0.022725	-0.47681	-0.036538	-0.024661	0.03344	-0.040825	
Amplification Peak 14 - CN values	12q15   	chr12:67407170-68461877(probes 1125163:1125885)	chr12:67448769-68453430(probes 1125185:1125884)	chr12:67232296-68710035(probes 1125073:1126060)	0.001944	  0.001944		Actual Copy Change Given	0.332	0.0066653	0.22854	6	0.010982	0.39065	0.20076	0.036088	0.92351	0.078871	0.27963	0.0067162	-0.00041585	0.75796	-0.038073	0.21102	-0.33653	6	0.044908	-0.015466	0.0019418	-0.29817	0.13155	0.49424	0.29674	0.41664	0.52433	5.1399	0.0076392	-0.0071958	0.44715	0.14028	0	0.0010725	-0.0022168	
Amplification Peak 15 - CN values	17q11.2 	chr17:28028389-28283153(probes 1373489:1373620)	chr17:28029339-28275073(probes 1373490:1373619)	chr17:28029339-28286086(probes 1373490:1373622)	0.10187	   0.12477		Actual Copy Change Given	0.057226	0.024268	0.24981	0.23581	0.039054	0.018243	-0.26961	-0.060748	0.83235	0.61317	0.35072	0.0022248	0.098706	0.017684	0.22163	-0.25997	0.081899	0.0098669	0.61904	4.5641	0.0051359	-0.032438	-0.13923	0.24808	-0.053611	0.25058	1.3482	6	0.019783	-0.53713	-0.0063668	0.44647	-0.031086	0.033972	-0.021235	
Amplification Peak 16 - CN values	17q12   	chr17:35058337-35159341(probes 1377327:1377368)	chr17:35135112-35157736(probes 1377360:1377367)	chr17:35058337-35242574(probes 1377327:1377414)	0.0020227	 0.0095515		Actual Copy Change Given	0.30234	0.037217	0.39894	0.25855	0.011895	0.021884	-0.38649	-0.060748	0.83648	0.61317	0.38188	0.00028275	0.093475	0.0375	0.15833	-0.051566	0.13007	0.048688	0.61904	-0.26757	0.021323	-0.013264	-0.13923	6	-0.053611	6	5.8196	0.79639	0.008892	0.0048579	0.54136	0.59512	-0.0041546	0.04259	-0.03504	
Amplification Peak 17 - CN values	19q13.13	chr19:42525035-44578035(probes 1460482:1461534)	chr19:43029423-43582697(probes 1460733:1461035)	chr19:42525085-44499063(probes 1460483:1461497)	0.028123	  0.028123		Actual Copy Change Given	-0.0022168	0.054091	0.33853	-0.00069303	0.033267	0.48058	1.0382	0.17347	-0.063435	-0.0023553	2.3723	-0.06249	-0.054151	0.38072	0.61737	0.17018	0.31177	0.54859	0.1024	1.5623	0.035242	1.0165	0.013772	0.27821	3.5859	0.030591	0.53977	4.3966	0.019451	0.51891	-0.0026322	1.6455	-0.0022168	0.035989	-0.01106	
Deletion Peak  1 - CN values	2q22.1 	chr2:139248662-143354308(probes 204824:207375)   	chr2:140697535-142610745(probes 205687:206929)    	chr2:141382787-141964496(probes 206094:206438)    	0.0003466	  0.0010461		Actual Copy Change Given	0.011539	-0.038714	0.18768	-0.055364	-0.0071958	0.23535	0.2966	-0.046718	-0.92733	-0.0073339	-0.046041	-0.15822	-0.010784	-1.0183	-0.081035	-0.46609	-0.14194	0.19527	0	1.6925	-0.0015243	-0.30169	-0.0013858	0.09159	-0.67325	-0.022606	0.45547	-0.30522	-0.0078863	-0.013815	-0.063838	0.25636	0.072109	-0.051046	0.0055529	
Deletion Peak  2 - CN values	2q37.1 	chr2:215984621-242951149(probes 248646:264003)   	chr2:232742158-233125795(probes 258571:258641)    	chr2:219145734-242951149(probes 250615:264003)    	0.011567	   0.015953		Actual Copy Change Given	-0.036674	0.010564	-0.49627	-0.026988	-0.0071958	-0.32832	-0.55226	-0.059673	-0.01685	-0.65255	-0.013264	-0.1229	-0.022606	-0.46918	-0.11624	-0.34903	0.2304	-0.13949	-0.073224	-0.26348	0	-0.32298	0.0020805	-0.48691	-0.039529	-0.40374	-0.035585	0.39247	-0.010922	-0.015524	-0.50069	-0.34973	-0.011473	0.0020805	-1.5	
Deletion Peak  3 - CN values	3p14.2 	chr3:59009803-61522370(probes 299516:301739)       	chr3:59706800-61213257(probes 300051:301541)        	chr3:60315493-60316741(probes 300797:300798)        	0.046582	   0.046582		Actual Copy Change Given	-0.090758	0.21131	0.35675	-0.051181	-0.0044312	-0.051451	-0.27739	-0.023977	-0.01737	0.0094491	-0.12642	-0.73187	0.0087997	-0.47564	-0.41012	-0.34065	-0.16077	-0.029584	0.47398	-0.58441	-0.010232	-0.27296	0.15248	-0.37149	0.28612	0.42991	-0.5616	-0.0062286	0.0012481	-0.54623	-0.043737	0.054226	0.010285	-0.0024938	-0.010094	
Deletion Peak  4 - CN values	4q22.1 	chr4:91092757-93459528(probes 427749:429036)       	chr4:91254810-92745056(probes 427837:428697)        	chr4:91782480-92256523(probes 428128:428435)        	0.0033997	  0.0033997		Actual Copy Change Given	-0.026545	-0.38325	-0.070001	-0.038442	-0.00027724	0.016845	-0.046448	0.053806	0.044148	0.0073609	-0.39107	-0.067184	-0.4806	-0.46483	-0.090868	0.1085	-0.35407	-0.48586	-0.2692	-0.11325	-0.0047079	-0.29319	-0.30157	-0.36125	-0.31774	0.40327	-0.0696	-0.9399	-0.01037	0.012795	-0.023566	-0.15452	0.054376	-0.020549	0.015866	
Deletion Peak  5 - CN values	5q11.2 	chr5:45730220-57785752(probes 511944:516824)       	chr5:54846932-54879896(probes 514934:514938)        	chr5:54842834-54902193(probes 514930:514946)        	0.016628	   0.053578		Actual Copy Change Given	0.39351	0.013353	-0.041702	-0.16714	0.00083195	-0.31736	-0.38187	0.035524	0.91683	0.0049969	-0.2654	-0.54854	-0.0024203	-0.46153	-0.16164	-0.065695	0.075703	-0.44059	-0.38545	-0.35088	-0.0053992	-0.01354	-0.058346	-0.0036011	-0.0053992	-0.43843	0.012516	-0.98738	-0.0031042	0.015028	0.049398	-1.1603	0.0090312	-0.012713	0.019783	
Deletion Peak  6 - CN values	5q12.2 	chr5:1-180857866(probes 483964:586812)              	chr5:63291748-63561748(probes 519775:519892)        	chr5:62314980-63522285(probes 519609:519876)        	0.015953	          1		Actual Copy Change Given	-0.36658	0.0013868	-0.092874	-0.16714	-0.0036011	-0.30686	-0.35647	0.035524	0.93	0.0029133	-0.2654	-0.54592	0.0012114	-0.46153	-0.15232	-0.065829	0.0098669	-0.44059	-0.30975	-0.34836	-0.0083005	-0.01354	-0.058346	-0.032178	-0.0040162	-0.43843	0	-1.5	-0.00027724	0.0090312	0.016705	-0.4108	0.0090312	-0.0024938	0.015168	
Deletion Peak  7 - CN values	6p25.2 	chr6:1-12405964(probes 586813:596043)                	chr6:2565774-3215169(probes 588570:589068)            	chr6:2256916-2880807(probes 588303:588821)            	0.22949	    0.22949		Actual Copy Change Given	0.033831	-0.0031859	-0.037218	0.11697	0.0024969	-0.015466	0.82627	-0.053611	-0.03749	-0.046989	-0.025072	0.0062536	0.069095	-0.48323	0.22625	-0.35269	0.13244	-0.51091	-0.10836	0.094782	0.010564	0.40594	0	-0.72615	0.079447	0.45241	-0.5014	0.5539	0.0020805	-0.54826	-0.50505	-0.072942	0.0037465	0.10672	-0.0067813	
Deletion Peak  8 - CN values	6q21   	chr6:97351134-131948859(probes 642536:662004)     	chr6:108383052-109213742(probes 648828:648829)    	chr6:108178832-109218025(probes 648683:648831)    	0.13513	    0.14829		Actual Copy Change Given	-0.0058444	-0.0092666	-0.026441	0.12756	0.0019418	-0.31529	-0.17112	0.035947	0.014888	-0.012713	-0.093667	-0.83994	0.083198	-0.46227	0.00057779	0	-0.15656	-0.038071	-0.24504	0.14295	-0.87852	-0.0033243	-0.023018	0.45493	-0.017116	-0.0056757	-0.53987	-0.41289	-0.010784	-0.54683	0.41116	-0.19962	-0.85805	-0.096629	-0.00013862	
Deletion Peak  9 - CN values	6q25.2 	chr6:153490906-155760257(probes 675975:677372)   	chr6:155094131-155200911(probes 676954:676995)    	chr6:154841711-155175371(probes 676866:676986)    	0.1177	    0.11712		Actual Copy Change Given	0.28762	-0.0092666	-0.026441	0.12756	0.0088742	-0.65473	-0.1865	0.013074	0.016006	-0.64668	-0.12333	-0.012244	0.083198	-0.46419	0.00057779	0	-0.17904	-0.020001	-0.54129	0.16282	0.0054139	-0.016979	-0.015741	-0.21404	-0.35327	-0.0056757	-1.0899	0.028341	-0.010094	-0.55937	0.42179	-0.19962	0.0033299	-0.084793	0.0073609	
Deletion Peak 10 - CN values	9p21.3 	chr9:21855498-22438737(probes 871954:872303)       	chr9:21949052-21967193(probes 871978:871979)        	chr9:20651159-24290149(probes 871048:873417)        	3.1786e-32	 3.1786e-32		Actual Copy Change Given	-0.44448	-0.68077	-1.2506	-0.91755	-0.9248	-0.94803	-0.57173	0.024548	-1.5	-1.284	-0.02384	-1.4238	-0.92533	-0.42855	-0.59037	-0.79685	-0.37136	-1.3394	-0.93243	-0.057385	-1.499	0.11213	-0.30909	0.2958	-0.70091	-1.2818	-0.031632	-0.058731	-1.5	-0.55096	0.82706	0.3766	-1.5	-0.15208	-1.5	
Deletion Peak 11 - CN values	10q26.3	chr10:121457373-133628884(probes 999122:1008241)	chr10:132775547-133003563(probes 1007702:1007878)	chr10:132882534-132883392(probes 1007791:1007792)	0.063834	   0.063834		Actual Copy Change Given	0.41915	0.0024969	-0.15183	0.086956	0	-0.075449	-0.21218	-0.13574	-0.093428	0.014051	-0.28829	0.022074	-0.1975	0.40444	-0.20682	0.040631	-0.42253	-1.278	-0.017205	0.01433	-0.1712	-0.05047	-0.14348	-0.066922	0.07671	0.037076	0.46331	-0.53642	0.0087528	-0.0060904	-0.050506	-0.43488	-0.062361	0.032563	-0.069332	
Deletion Peak 12 - CN values	11p15.4	chr11:1-134452384(probes 1008363:1086973)          	chr11:5430440-5432287(probes 1010584:1010586)        	chr11:5431659-5432739(probes 1010586:1010587)        	0.23636	     0.2394		Actual Copy Change Given	-0.54108	-0.049695	-0.44264	-0.058843	-0.00055444	-0.061689	-0.58951	0.06208	0.046984	0.0068044	-0.13432	-0.69637	0.00013863	-0.47152	-0.23053	-0.070783	-0.30416	-0.40793	-0.37286	-0.20299	-0.89909	0.24171	0.086233	-0.32901	-0.0094046	-1.5	-0.51558	-0.45971	0.0084743	-0.53378	0.43142	-0.39475	-0.0087146	0.57719	-0.016017	
Deletion Peak 13 - CN values	15q13.3	chr15:22478867-30800105(probes 1271806:1275363)   	chr15:29144240-29146494(probes 1275108:1275109)    	chr15:29139368-29156648(probes 1275106:1275119)    	0.087731	   0.087731		Actual Copy Change Given	-0.11417	0.0091705	-0.92032	-0.19725	-0.035721	-0.23692	-0.18181	-0.043195	0.006109	-0.0099565	0.013213	-0.016286	0.013249	0.019083	-0.1883	-0.33904	-0.60264	0.18102	0.037833	0.096723	-0.00041585	-0.063435	0.041034	-0.37313	-0.0084385	0.43513	-0.54203	-0.47554	0.021261	0.0010036	0.39695	-0.077212	-0.013815	-1.0037	0.0089354	
Deletion Peak 14 - CN values	17p12  	chr17:10040108-15280519(probes 1364715:1368493)   	chr17:11439937-11823444(probes 1365725:1365992)    	chr17:10209221-16512115(probes 1364863:1368994)    	0.001221	   0.001221		Actual Copy Change Given	-0.21747	0.024969	-0.097232	-0.42123	0.0019418	-0.32275	-0.43794	-0.065716	-0.94959	-1.329	0.31274	-0.73406	0.073402	-0.054016	0.11186	-0.25997	-0.34067	0.019923	-0.51904	-0.25455	-0.90128	0.18147	-0.2258	-0.36045	-0.028901	-0.41992	-0.67426	-0.92971	0.020203	-0.54593	-0.51115	-0.93055	-0.030267	-0.10893	-0.021235	
