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fh_MutSigPreprocess
-i
UCEC
-b
hg18
-t
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010_fix1.txt
-c
/xchip/cga1/lawrence/db/context65
-cw
/xchip/cga1/lawrence/db/context65/RefSeq_exons_hg18_june2010_terr_only.wig
-cat
4
-maf2
/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/temp/attachments/cgaadm_deadline/Axis6737516951965115667.att_dependentsValues3204861885490723891.tsv
-maflabel1
Broad
-maflabel2
WashU
-maflabel3
Baylor
-wig2
/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/temp/attachments/cgaadm_deadline/Axis5058050380626923613.att_dependentsValues8660729584612297098.tsv
-p
/xchip/cga1/reference/mutsig_params/MutSig1.5.params.txt

               perform_mutsig2_analysis: 0
     use_sample_specific_mutation_rates: 1
        analyze_silent_nonsilent_ratios: 1
                 sig_calculation_method: 'projection'
                  clip_tumor_from_names: 1
                                  build: 'hg18'
    consolidate_adjacent_muts_threshold: 1
             remove_noncoding_mutations: 1
                    enforce_target_list: 0
                            target_list: [1x64 char]
                     mutation_blacklist: []
                     mutation_whitelist: []

Loading MAFs for WashU
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-A5-A0G1-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-A5-A0G2-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-A5-A0G3-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-A5-A0G5-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-A5-A0G9-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-A5-A0GA-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-A5-A0GB-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-A5-A0GD-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-A5-A0GE-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-A5-A0GG-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-A5-A0GH-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-A5-A0GI-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-A5-A0GJ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-A5-A0GM-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-A5-A0GN-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-A5-A0GP-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-A5-A0GQ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-A5-A0GR-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-A5-A0GU-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-A5-A0GV-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-A5-A0GW-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-A5-A0GX-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-A5-A0R6-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-A5-A0R7-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-A5-A0R8-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-A5-A0R9-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-A5-A0RA-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-A5-A0VO-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-A5-A0VP-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-A5-A0VQ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AP-A051-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AP-A052-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AP-A053-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AP-A054-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AP-A056-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AP-A059-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AP-A05A-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AP-A05D-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AP-A05H-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AP-A05J-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AP-A05N-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AP-A05O-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AP-A05P-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AP-A0L8-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AP-A0L9-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AP-A0LD-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AP-A0LE-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AP-A0LF-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AP-A0LG-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AP-A0LH-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AP-A0LI-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AP-A0LJ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AP-A0LL-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AP-A0LM-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AP-A0LN-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AP-A0LO-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AP-A0LP-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AP-A0LQ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AP-A0LT-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AP-A0LV-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AX-A05S-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AX-A05T-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AX-A05U-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AX-A05W-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AX-A05Y-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AX-A05Z-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AX-A060-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AX-A062-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AX-A063-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AX-A064-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AX-A06B-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AX-A06D-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AX-A06F-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AX-A06H-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AX-A06J-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AX-A06L-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AX-A0IS-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AX-A0IU-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AX-A0IW-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AX-A0IZ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AX-A0J0-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-AX-A0J1-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-B5-A0JN-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-B5-A0JR-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-B5-A0JS-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-B5-A0JT-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-B5-A0JV-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-B5-A0JY-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-B5-A0JZ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-B5-A0K0-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-B5-A0K1-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-B5-A0K2-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-B5-A0K3-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-B5-A0K4-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-B5-A0K6-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-B5-A0K7-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-B5-A0K9-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-B5-A11E-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-B5-A11F-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-B5-A11G-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-B5-A11H-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-B5-A11I-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-B5-A11J-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-B5-A11M-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-B5-A11N-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-B5-A11O-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-B5-A11Q-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-B5-A11R-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-B5-A11S-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-B5-A11U-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-B5-A11V-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-B5-A11W-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-B5-A11X-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-B5-A11Y-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-B5-A11Z-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-B5-A121-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BG-A0LW-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BG-A0LX-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BG-A0M0-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BG-A0M2-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BG-A0M3-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BG-A0M4-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BG-A0M6-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BG-A0M7-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BG-A0M8-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BG-A0M9-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BG-A0MC-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BG-A0MG-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BG-A0MH-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BG-A0MI-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BG-A0MO-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BG-A0MQ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BG-A0MS-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BG-A0MT-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BG-A0MU-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BG-A0RY-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BG-A0VT-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BG-A0VV-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BG-A0VW-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BG-A0VX-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BG-A0VZ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BG-A0W1-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BG-A0W2-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BG-A0YU-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BG-A0YV-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BG-A186-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BG-A187-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BG-A18A-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BG-A18B-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BG-A18C-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BK-A0C9-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BK-A0CA-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BK-A0CB-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BK-A0CC-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BK-A139-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BK-A13C-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BS-A0T9-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BS-A0TA-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BS-A0TC-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BS-A0TD-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BS-A0TE-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BS-A0TG-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BS-A0TI-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BS-A0TJ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BS-A0U5-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BS-A0U7-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BS-A0U8-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BS-A0U9-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BS-A0UA-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BS-A0UF-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BS-A0UJ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BS-A0UL-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BS-A0UM-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BS-A0UT-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BS-A0UV-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BS-A0V6-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BS-A0V7-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BS-A0V8-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-BS-A0WQ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A0ZN-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A0ZO-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A0ZP-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A0ZQ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A0ZR-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A0ZS-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A0ZU-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A0ZV-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A0ZZ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A101-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A102-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A103-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A15V-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A15W-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A15X-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A15Z-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A160-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A161-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A162-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A163-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A165-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A167-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A168-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A169-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A16B-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A16D-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A16E-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A16F-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A16G-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A16I-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A16J-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A16N-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A16O-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A16Q-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A16R-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A16S-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A16V-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A16X-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A16Y-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A174-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A175-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A176-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A177-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A179-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A17A-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A17B-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A17C-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A17D-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A17F-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A17H-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A17K-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A17L-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A17M-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A17N-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A17Q-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A17R-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A17S-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A17T-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-D1-A17U-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.4.0/TCGA-DI-A0WH-01.maf.txt
Concatenating structs...

                         BAM_file: [239]
                           Center: [239]
                       Chromosome: [239]
                     End_position: [239]
                   Entrez_Gene_Id: [239]
                      Hugo_Symbol: [239]
           Match_Norm_Seq_Allele1: [239]
           Match_Norm_Seq_Allele2: [239]
    Match_Norm_Validation_Allele1: [239]
    Match_Norm_Validation_Allele2: [239]
      Matched_Norm_Sample_Barcode: [239]
                  Mutation_Status: [239]
                       NCBI_Build: [239]
                 Reference_Allele: [239]
                            Score: [239]
                  Sequence_Source: [239]
                        Sequencer: [239]
                 Sequencing_Phase: [239]
                   Start_position: [239]
                           Strand: [239]
             Tumor_Sample_Barcode: [239]
                Tumor_Seq_Allele1: [239]
                Tumor_Seq_Allele2: [239]
         Tumor_Validation_Allele1: [239]
         Tumor_Validation_Allele2: [239]
                Validation_Method: [239]
                Validation_Status: [239]
           Variant_Classification: [239]
                     Variant_Type: [239]
              Verification_Status: [239]
                          dataset: [239]
                         dbSNP_RS: [239]
                 dbSNP_Val_Status: [239]
                          patient: [239]
                        ----TOTAL: [8126]
Calling preprocess_mutations...
Validation_Status:

      Unknown: [260277]
    ----TOTAL: [260277]
Omitting the following 139 mutations on nonstandard chromosomes:

    GL000192.1: [42]
    GL000205.1: [9]
    GL000209.1: [14]
    GL000211.1: [5]
    GL000212.1: [6]
    GL000213.1: [5]
    GL000214.1: [7]
    GL000218.1: [5]
    GL000219.1: [2]
    GL000222.1: [6]
    GL000224.1: [6]
    GL000225.1: [23]
    GL000229.1: [3]
    GL000238.1: [1]
    GL000241.1: [5]
     ----TOTAL: [139]
Removing the following non-coding mutations (based on "type" field):
        3'UTR: [1]
        5'UTR: [2]
          RNA: [9019]
    ----TOTAL: [9022]
Not enforcing any target list.
Collapsing adjacent mutations:

    2 SNPs to one Complex_substitution (guessing "Missense"): [10]
                     2 SNPs to one DNP (guessing "Missense"): [130]
                                  2 SNPs/Indels to one Indel: [2]
                                 2 redundant SNPs to one SNP: [3]
                                                   ----TOTAL: [145]

Genes affected:
       ABCA12: [1]
       ABCA13: [1]
        ABCB4: [1]
       ABI3BP: [1]
        ACSL5: [1]
       ADAM22: [1]
      ADAMTS5: [1]
         ADH5: [1]
       AHNAK2: [1]
     ARHGAP35: [1]
        BAZ1B: [1]
         BMP1: [1]
     C10orf26: [1]
     C13orf33: [1]
      CACNA1E: [1]
     CACNA2D4: [1]
        CAPN6: [1]
         CD19: [1]
        CDK16: [1]
         CDK3: [1]
        CENPJ: [1]
         CHD9: [1]
       CLDN10: [1]
         CLMN: [1]
       CNKSR3: [1]
       COL1A2: [1]
       CORO2A: [1]
       CPAMD8: [1]
         CPS1: [1]
       CTNNB1: [1]
         CUL1: [1]
      CYP2C19: [1]
         DBR1: [1]
        DCAF6: [1]
          DCT: [1]
         DHFR: [1]
         DHX8: [1]
        DIP2C: [1]
       EFCAB6: [1]
       EFCAB9: [1]
       EIF2C2: [1]
         ENO3: [1]
        ERBB4: [1]
         FLNC: [1]
         FLT1: [1]
         GLG1: [1]
        GNAT1: [1]
      GPR137B: [1]
        GPR35: [1]
        GRID1: [1]
       GRIN2B: [1]
        HERC1: [1]
        HNF1A: [1]
        IREB2: [1]
         IRS1: [1]
         IRX2: [1]
        KDM5B: [1]
    KIDINS220: [1]
       KIRREL: [1]
        KPNB1: [1]
         LCTL: [1]
    LOC441016: [1]
    LOC643637: [1]
        LRCH2: [1]
        LRRK2: [1]
       LUC7L2: [1]
        MAP1B: [1]
         MC3R: [1]
       MCART1: [1]
        MPRIP: [1]
       MS4A14: [1]
         MSH4: [1]
         MUC4: [1]
        MXRA5: [1]
        MYH14: [1]
         MYL3: [1]
         MYLK: [1]
       NAP1L1: [1]
       NCAPH2: [1]
         NEBL: [1]
         NGEF: [1]
        NTRK2: [1]
         OC90: [1]
        OR2T8: [1]
        OR4D2: [1]
        OR9K2: [1]
       PCDH12: [1]
       PCDH15: [1]
        PCDH7: [1]
       PCDHA5: [1]
       PCDHA6: [1]
         PIGT: [1]
     PNLIPRP1: [1]
      PRPS1L1: [1]
       PSMB11: [1]
         PTEN: [1]
        PTPRS: [1]
        RAD50: [1]
      RALGPS1: [1]
        RGS22: [1]
         ROD1: [1]
      RPS6KB1: [1]
        SALL4: [1]
       SAMHD1: [1]
       SERHL2: [1]
       SH3RF3: [1]
      SPECC1L: [1]
         SPP2: [1]
       SYNPO2: [1]
        TACR2: [1]
      TCP11L1: [1]
        TKTL2: [1]
         TMC3: [1]
      TMEM213: [1]
         TRIO: [1]
        TRPS1: [1]
        TRRAP: [1]
        TSHZ3: [1]
          TTN: [1]
         TYK2: [1]
        USP41: [1]
        XIRP2: [1]
         YSK4: [1]
        ZC3H6: [1]
      ZC3HAV1: [1]
      ZMYND12: [1]
       ZMYND8: [1]
        ZNF16: [1]
       ZNF283: [1]
      ZNF286A: [1]
       ZNF606: [1]
       ZNF675: [1]
          ZP4: [1]
       ZYG11A: [1]
        FLRT2: [2]
       GPR112: [2]
        KIF2B: [2]
         NAV2: [2]
          INS: [3]
    ----TOTAL: [145]

Patients affected:
    UCEC-A5-A0GB: [1]
    UCEC-B5-A11N: [1]
    UCEC-BG-A0MQ: [1]
    UCEC-BG-A0MS: [1]
    UCEC-D1-A0ZS: [1]
    UCEC-D1-A103: [1]
    UCEC-D1-A15W: [1]
    UCEC-D1-A165: [1]
    UCEC-D1-A16Y: [1]
    UCEC-AX-A05Z: [3]
    UCEC-AP-A051: [4]
    UCEC-AX-A0J0: [4]
    UCEC-AX-A0J1: [4]
    UCEC-AP-A059: [5]
    UCEC-BS-A0UF: [5]
    UCEC-D1-A17Q: [5]
    UCEC-AX-A06F: [6]
    UCEC-BS-A0UV: [6]
    UCEC-A5-A0G1: [7]
    UCEC-B5-A0JY: [7]
    UCEC-AP-A056: [8]
    UCEC-B5-A11E: [8]
    UCEC-AP-A0LM: [11]
    UCEC-A5-A0G2: [53]
       ----TOTAL: [145]
Collapsed 251116 muts to 250971 muts
Getting context for chr: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 
Done.
Saved UCEC.mutation_preprocessing_report.txt
HUGE STRUCT: SAVING CHUNK 1/2
  [save_struct] 19/46 20/46 21/46 22/46 23/46 24/46 25/46 26/46 27/46 28/46 29/46 30/46 31/46 32/46 33/46 34/46 35/46 36/46 37/46 38/46 39/46 40/46 41/46 42/46 43/46 44/46 45/46 46/46  [collapse]
HUGE STRUCT: SAVING CHUNK 2/2
Saved UCEC.maf
Total of 239 patients had both MAF and WIG data.
Saved UCEC.patients.txt
Saved UCEC.coverage.prepare.txt
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigPreprocess.63.3133/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/48897
mFile: fh_MutSigPreprocess
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigPreprocess.63.3133/fh_MutSigPreprocess -i UCEC -b hg18 -t /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010_fix1.txt -c /xchip/cga1/lawrence/db/context65 -cw /xchip/cga1/lawrence/db/context65/RefSeq_exons_hg18_june2010_terr_only.wig -cat 4 -maf2 /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/temp/attachments/cgaadm_deadline/Axis6737516951965115667.att_dependentsValues3204861885490723891.tsv -maflabel1 Broad -maflabel2 WashU -maflabel3 Baylor -wig2 /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/temp/attachments/cgaadm_deadline/Axis5058050380626923613.att_dependentsValues8660729584612297098.tsv -p /xchip/cga1/reference/mutsig_params/MutSig1.5.params.txt
