Analysis Overview for Cervical Squamous Cell Carcinoma
Maintained by TCGA GDAC Team (Broad Institute/Dana-Farber Cancer Institute/Harvard Medical School)
Overview
Introduction

This is the analysis overview for Firehose run "21 March 2012".

Summary

Note: These results are offered to the community as an additional reference point, enabling a wide range of cancer biologists, clinical investigators, and genome and computational scientists to easily incorporate TCGA into the backdrop of ongoing research. While every effort is made to ensure that Firehose input data and algorithms are of the highest possible quality, these analyses have not been reviewed by domain experts.

Results

- Sequence and Copy Number Analyses

- Copy number analysis (GISTIC2)
  View Report | There were 36 tumor samples used in this analysis: 14 significant arm-level results, 13 significant focal amplifications, and 17 significant focal deletions were found.

- Mutation Analysis (MutSig)
  View Report | Significantly mutated genes (q ≤ 0.1): 8

Methods & Data
Input

- Firehose Directory = /xchip/cga1/tcga_gdac_firehose_output

- Run Prefix = analyses__2012_03_21

- Summary Report Date = Fri Apr 20 10:42:32 2012

- Protection = FALSE

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