Broad GDAC analyses__2012_04_25__coadread

Tumor	BCR	Clinical	CN	Methylation	mRNA	mRNAseq	miR	miRseq	RPPA	MAF
COADREAD	590	590	564	584	224	83	0	255	399	224

Note that the links below require Broad internal Firehose login credentials.

	Pipeline	NotRunnable	Successful
1	Aggregate_Clusters	0	1
2	CopyNumber_GeneBySample	0	1
3	CopyNumber_Gistic2	0	1
4	CopyNumber_Preprocess	0	1
5	Correlate_CopyNumber_vs_miR	1	0
6	Correlate_CopyNumber_vs_mRNA	0	1
7	Correlate_Methylation_vs_mRNA	0	1
8	Methylation_Clustering_CNMF	0	1
9	Methylation_Preprocess	0	1
10	miRseq_Clustering_CNMF	0	1
11	miRseq_Clustering_Consensus	0	1
12	miRseq_Preprocess	0	1
13	miR_Clustering_CNMF	1	0
14	miR_Clustering_Consensus	1	0
15	miR_FindDirectTargets	1	0
16	mRNAseq_Clustering_CNMF	0	1
17	mRNAseq_Clustering_Consensus	0	1
18	mRNAseq_Preprocess	0	1
19	mRNA_Clustering_CNMF	0	1
20	mRNA_Clustering_Consensus	0	1
21	mRNA_Preprocess_Median	0	1
22	Mutation_Assessor	0	1
23	Mutation_Significance	0	1
24	Pathway_FindEnrichedGenes	0	1
25	Pathway_Paradigm_Expression	0	1
26	Pathway_Paradigm_Expression_CopyNumber	0	1
27	Pathway_Paradigm_Lite	0	1
	Total	4	23

This table generated on Thu May 24 17:32:26 2012