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fh_MutSigPreprocess
-i
KIRC
-b
hg18
-t
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010_fix1.txt
-c
/xchip/cga1/lawrence/db/context65
-cw
/xchip/cga1/lawrence/db/context65/RefSeq_exons_hg18_june2010_terr_only.wig
-cat
4
-maf1
/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/temp/attachments/cgaadm_deadline/Axis6322891826410004888.att_dependentsValues1362158999805946037.tsv
-maf3
/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/temp/attachments/cgaadm_deadline/Axis6970042395471879853.att_dependentsValues2618888561468775755.tsv
-maflabel1
Broad
-maflabel2
WashU
-maflabel3
Baylor
-wig1
/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/temp/attachments/cgaadm_deadline/Axis4696002942578565981.att_dependentsValues2557258256092057921.tsv
-wig3
/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/temp/attachments/cgaadm_deadline/Axis4920161428475124505.att_dependentsValues5581579652686100130.tsv
-p
/xchip/cga1/reference/mutsig_params/MutSig1.5.params.txt

               perform_mutsig2_analysis: 0
     use_sample_specific_mutation_rates: 1
        analyze_silent_nonsilent_ratios: 1
                 sig_calculation_method: 'projection'
                  clip_tumor_from_names: 1
                                  build: 'hg18'
    consolidate_adjacent_muts_threshold: 1
             remove_noncoding_mutations: 1
                    enforce_target_list: 0
                            target_list: [1x64 char]
                     mutation_blacklist: []
                     mutation_whitelist: []

Loading MAFs for Broad
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-A3-3308-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-A3-3311-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-A3-3313-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-A3-3316-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-A3-3317-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-A3-3319-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-A3-3320-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-A3-3322-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-A3-3323-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-A3-3324-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-A3-3326-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-A3-3331-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-A3-3346-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-A3-3357-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-A3-3363-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-A3-3367-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-A3-3370-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-A3-3372-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-A3-3373-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-A3-3376-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-A3-3378-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-A3-3380-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-A3-3382-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-A3-3383-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-A3-3385-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-AK-3444-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-AK-3447-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-AK-3453-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-AK-3455-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-AK-3465-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-AS-3778-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B0-4823-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B0-4827-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B0-4842-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B0-4945-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B0-5075-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B0-5077-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B0-5081-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B0-5084-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B0-5085-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B0-5088-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B0-5092-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B0-5094-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B0-5095-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B0-5096-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B0-5097-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B0-5098-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B0-5099-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B0-5100-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B0-5102-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B0-5104-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B0-5106-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B0-5107-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B0-5108-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B0-5109-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B0-5110-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B0-5113-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B0-5115-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B0-5116-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B0-5119-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B0-5120-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B0-5121-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B2-3924-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B2-4098-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B2-4099-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B2-4101-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B8-4620-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B8-4622-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B8-5158-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B8-5159-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B8-5163-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B8-5164-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-B8-5165-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-4177-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-4760-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-4782-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-4795-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-4801-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-4960-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-4961-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-4962-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-4963-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-4964-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-4965-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-4967-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-4968-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-4970-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-4971-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-4972-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-4973-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-4974-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-4975-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-4977-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-4981-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-4982-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-4983-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-4985-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-4987-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-4988-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-4989-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-4991-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-4992-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-4993-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-4998-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-5000-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-5001-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-5004-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-5007-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-5008-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-5010-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-5168-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-5169-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-5170-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-5173-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-5174-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-5175-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-5176-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-5177-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-5178-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-5180-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-5181-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-5182-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-5183-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-5184-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-5185-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-5186-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-5187-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-5189-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-5190-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-5191-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-5192-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-5194-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-5195-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-5196-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-5198-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-5200-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-5201-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-BP-5202-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-CJ-4882-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-CJ-4897-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-CJ-4899-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-CJ-4901-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-CJ-4902-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-CJ-4903-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-CJ-4904-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-CJ-4905-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-CJ-4907-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-CJ-4908-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-CJ-4912-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-CJ-4913-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-CJ-4916-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-CJ-4918-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-CJ-4920-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-CJ-4923-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-CZ-4853-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-CZ-4856-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_KIRC.IlluminaGA_DNASeq.Level_2.1.5.0/TCGA-CZ-4859-01.maf.txt
Loading MAFs for Baylor
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-A3-3347-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-A3-3349-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-A3-3362-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-AK-3426-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-AK-3428-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-AK-3429-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-AK-3430-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-AK-3431-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-AK-3434-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-AK-3436-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-AK-3445-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-AK-3451-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-AK-3454-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-AK-3456-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-AK-3458-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-AK-3460-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-AK-3461-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4690-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4691-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4693-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4694-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4696-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4697-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4698-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4703-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4706-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4707-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4710-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4713-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4714-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4718-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4810-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4811-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4813-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4814-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4815-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4816-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4817-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4818-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4819-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4821-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4822-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4824-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4828-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4833-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4836-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4837-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4838-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4839-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4841-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4843-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4844-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4845-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4846-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4847-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4848-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4849-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-4852-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-5080-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-5399-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-5400-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B0-5402-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B2-3924-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B2-4098-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B2-4099-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B2-4101-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B4-5377-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B4-5378-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B8-4143-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B8-4148-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B8-4151-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B8-4154-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B8-4620-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B8-4621-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-B8-4622-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4161-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4162-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4163-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4165-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4166-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4169-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4170-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4173-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4176-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4325-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4326-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4329-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4330-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4332-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4337-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4338-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4340-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4341-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4343-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4345-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4346-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4347-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4349-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4351-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4352-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4756-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4758-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4759-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4761-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4762-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4763-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4765-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4768-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4770-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4774-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4775-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4777-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4781-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4784-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4787-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4789-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4790-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4797-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4798-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4799-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4803-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4804-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-BP-4807-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CJ-4634-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CJ-4635-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CJ-4637-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CJ-4638-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CJ-4639-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CJ-4640-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CJ-4641-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CJ-4643-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CJ-4644-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CJ-4868-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CJ-4870-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CJ-4871-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CJ-4872-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CJ-4873-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CJ-4874-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CJ-4875-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CJ-4876-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CJ-4878-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CJ-4881-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CJ-4884-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CJ-4885-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CJ-4886-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CJ-4887-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CJ-4889-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CJ-4890-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CJ-4893-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CJ-4895-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CZ-4854-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CZ-4857-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CZ-4858-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CZ-4860-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CZ-4862-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CZ-4863-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CZ-4866-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CZ-5451-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CZ-5452-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CZ-5453-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CZ-5454-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CZ-5456-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CZ-5457-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CZ-5458-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CZ-5459-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CZ-5460-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CZ-5461-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CZ-5462-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CZ-5463-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CZ-5464-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CZ-5465-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CZ-5466-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CZ-5467-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CZ-5468-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CZ-5469-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/kirc/tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf/bcm.edu_KIRC.SOLiD_DNA.Level_2.1.0.0/TCGA-CZ-5470-01.maf.txt
Concatenating structs...

                         BAM_file: [333]
                           Center: [333]
                       Chromosome: [333]
                     End_position: [333]
                   Entrez_Gene_Id: [333]
                      Hugo_Symbol: [333]
           Match_Norm_Seq_Allele1: [333]
           Match_Norm_Seq_Allele2: [333]
    Match_Norm_Validation_Allele1: [333]
    Match_Norm_Validation_Allele2: [333]
      Matched_Norm_Sample_Barcode: [333]
                  Mutation_Status: [333]
                       NCBI_Build: [333]
                 Reference_Allele: [333]
                            Score: [333]
                  Sequence_Source: [333]
                        Sequencer: [333]
                 Sequencing_Phase: [333]
                   Start_position: [333]
                           Strand: [333]
             Tumor_Sample_Barcode: [333]
                Tumor_Seq_Allele1: [333]
                Tumor_Seq_Allele2: [333]
         Tumor_Validation_Allele1: [333]
         Tumor_Validation_Allele2: [333]
                Validation_Method: [333]
                Validation_Status: [333]
           Variant_Classification: [333]
                     Variant_Type: [333]
              Verification_Status: [333]
                          dataset: [333]
                         dbSNP_RS: [333]
                 dbSNP_Val_Status: [333]
                          patient: [333]
                        ----TOTAL: [11322]
Calling preprocess_mutations...
Validation_Status:

      Unknown: [19116]
    ----TOTAL: [19116]
Not enforcing any target list.
Collapsing adjacent mutations:

    2 SNPs to one Complex_substitution (guessing "Missense"): [2]
                     2 SNPs to one DNP (guessing "Missense"): [27]
                                  2 SNPs/Indels to one Indel: [6]
                                 2 redundant SNPs to one SNP: [10]
                     3 SNPs to one DNP (guessing "Missense"): [3]
                                  3 SNPs/Indels to one Indel: [1]
                                                   ----TOTAL: [49]

Genes affected:
       B3GNT7: [1]
     C19orf61: [1]
        CCNE1: [1]
         DHDH: [1]
        DHX15: [1]
       EIF2B1: [1]
       EIF2C2: [1]
      FAM200A: [1]
         FCN1: [1]
        GTDC1: [1]
       HGC6.3: [1]
         IMMT: [1]
     KRTAP1-3: [1]
         LRP2: [1]
      MARCH10: [1]
         MLL2: [1]
          MME: [1]
          NEB: [1]
         PCM1: [1]
         PKD1: [1]
        PLIN4: [1]
          PPL: [1]
       PRUNE2: [1]
       PTCHD2: [1]
         PTEN: [1]
       PTPN18: [1]
       R3HDM1: [1]
        RAD21: [1]
        RCSD1: [1]
        RQCD1: [1]
         SACS: [1]
       SETBP1: [1]
        SETD2: [1]
        SF3A3: [1]
       SFMBT2: [1]
      SLC15A4: [1]
       SPHKAP: [1]
        STAU2: [1]
        STON2: [1]
        SYNE2: [1]
        TDRD7: [1]
        TMLHE: [1]
         TP53: [1]
         VCX2: [1]
         XCL1: [1]
        ZDBF2: [1]
          VHL: [3]
    ----TOTAL: [49]

Patients affected:
    KIRC-B0-4696: [1]
    KIRC-B0-4811: [1]
    KIRC-B0-4821: [1]
    KIRC-B0-5399: [1]
    KIRC-B2-4098: [1]
    KIRC-B2-4099: [1]
    KIRC-B4-5377: [1]
    KIRC-B8-4151: [1]
    KIRC-B8-4154: [1]
    KIRC-BP-4326: [1]
    KIRC-BP-4341: [1]
    KIRC-CJ-4637: [1]
    KIRC-CJ-4639: [1]
    KIRC-CJ-4643: [1]
    KIRC-CJ-4644: [1]
    KIRC-CZ-5453: [1]
    KIRC-CZ-5454: [1]
    KIRC-CZ-5459: [1]
    KIRC-CZ-5461: [1]
    KIRC-CZ-5465: [1]
    KIRC-CZ-5469: [1]
    KIRC-AK-3430: [2]
    KIRC-AK-3451: [2]
    KIRC-B0-4698: [2]
    KIRC-B0-4710: [2]
    KIRC-B0-4818: [2]
    KIRC-B2-4101: [2]
    KIRC-CZ-5451: [2]
    KIRC-CZ-5460: [2]
    KIRC-CZ-5468: [2]
    KIRC-B2-3924: [3]
    KIRC-B8-4620: [3]
    KIRC-B8-4622: [4]
       ----TOTAL: [49]
Collapsed 19116 muts to 19063 muts
Getting context for chr: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 
Done.
Saved KIRC.mutation_preprocessing_report.txt
Saved KIRC.maf
Total of 327 patients had both MAF and WIG data.
Saved KIRC.patients.txt
Saved KIRC.coverage.prepare.txt
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigPreprocess.63.3133/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/48846
mFile: fh_MutSigPreprocess
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigPreprocess.63.3133/fh_MutSigPreprocess -i KIRC -b hg18 -t /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010_fix1.txt -c /xchip/cga1/lawrence/db/context65 -cw /xchip/cga1/lawrence/db/context65/RefSeq_exons_hg18_june2010_terr_only.wig -cat 4 -maf1 /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/temp/attachments/cgaadm_deadline/Axis6322891826410004888.att_dependentsValues1362158999805946037.tsv -maf3 /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/temp/attachments/cgaadm_deadline/Axis6970042395471879853.att_dependentsValues2618888561468775755.tsv -maflabel1 Broad -maflabel2 WashU -maflabel3 Baylor -wig1 /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/temp/attachments/cgaadm_deadline/Axis4696002942578565981.att_dependentsValues2557258256092057921.tsv -wig3 /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/temp/attachments/cgaadm_deadline/Axis4920161428475124505.att_dependentsValues5581579652686100130.tsv -p /xchip/cga1/reference/mutsig_params/MutSig1.5.params.txt
