
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_CorrelateExpressionVsMethylation.62.3303/ExprMeth.R")
> result <- gdacExprMeth("-m/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergeDataFilesPipeline/OV/1216878/2.GDAC_MergeDataFiles.Finished/OV.methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.data.txt", "-e/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mRNA_Preprocess_Median/OV/1227781/0.GDAC_mRNA_Preprocess_Median.Finished/OV.medianexp.txt", "-cspearman", "-bOV", "-n/xchip/tcga/Tools/Nozzle/v1.current")
[1] "OV_correlation_hist_spearman_plots.png"
[1] "Correlate_Methylation_vs_mRNA_OV_matrix.txt"
There were 50 or more warnings (use warnings() to see the first 50)
> q(save="no")
