Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
getCNExpCorrelation1.reducedseg	PANCANCER.RS.tsv	gdac.broadinstitute.org_PANCANCER.CopyNumber_GeneBySample.Level_4.2012042500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00289:48	Correlate_CopyNumber_vs_mRNA_2012042500	PANCANCER.CORS.tsv	Correlation-CopyNumber_Expression_miRNA	Level_4	text	gdac.broadinstitute.org_PANCANCER.Correlate_CopyNumber_vs_mRNA.Level_4.2012042500.0.0	yes
getCNExpCorrelation1.reducedseg	PANCANCER.RS.tsv	gdac.broadinstitute.org_PANCANCER.CopyNumber_GeneBySample.Level_4.2012042500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00289:48	Correlate_CopyNumber_vs_mRNA_2012042500	OUTPUT.CORS.png	Correlation-CopyNumber_Expression_miRNA	Level_4	png	gdac.broadinstitute.org_PANCANCER.Correlate_CopyNumber_vs_mRNA.Level_4.2012042500.0.0	yes
getCNExpCorrelation1.reducedseg	PANCANCER.RS.tsv	gdac.broadinstitute.org_PANCANCER.CopyNumber_GeneBySample.Level_4.2012042500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00289:48	Correlate_CopyNumber_vs_mRNA_2012042500	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_PANCANCER.Correlate_CopyNumber_vs_mRNA.Level_4.2012042500.0.0	yes
getCNExpCorrelation1.reducedseg	PANCANCER.RS.tsv	gdac.broadinstitute.org_PANCANCER.CopyNumber_GeneBySample.Level_4.2012042500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00289:48	Correlate_CopyNumber_vs_mRNA_2012042500	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_PANCANCER.Correlate_CopyNumber_vs_mRNA.Level_4.2012042500.0.0	yes
getCNExpCorrelation1.mrnaexp	PANCANCER.medianexp.txt	gdac.broadinstitute.org_PANCANCER.mRNA_Preprocess_Median.Level_4.2012042500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00289:48	Correlate_CopyNumber_vs_mRNA_2012042500	PANCANCER.CORS.tsv	Correlation-CopyNumber_Expression_miRNA	Level_4	text	gdac.broadinstitute.org_PANCANCER.Correlate_CopyNumber_vs_mRNA.Level_4.2012042500.0.0	yes
getCNExpCorrelation1.mrnaexp	PANCANCER.medianexp.txt	gdac.broadinstitute.org_PANCANCER.mRNA_Preprocess_Median.Level_4.2012042500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00289:48	Correlate_CopyNumber_vs_mRNA_2012042500	OUTPUT.CORS.png	Correlation-CopyNumber_Expression_miRNA	Level_4	png	gdac.broadinstitute.org_PANCANCER.Correlate_CopyNumber_vs_mRNA.Level_4.2012042500.0.0	yes
getCNExpCorrelation1.mrnaexp	PANCANCER.medianexp.txt	gdac.broadinstitute.org_PANCANCER.mRNA_Preprocess_Median.Level_4.2012042500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00289:48	Correlate_CopyNumber_vs_mRNA_2012042500	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_PANCANCER.Correlate_CopyNumber_vs_mRNA.Level_4.2012042500.0.0	yes
getCNExpCorrelation1.mrnaexp	PANCANCER.medianexp.txt	gdac.broadinstitute.org_PANCANCER.mRNA_Preprocess_Median.Level_4.2012042500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00289:48	Correlate_CopyNumber_vs_mRNA_2012042500	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_PANCANCER.Correlate_CopyNumber_vs_mRNA.Level_4.2012042500.0.0	yes
