Unique Name	Descriptor	Wide Peak Limits	Peak Limits	Region Limits	q values	Residual q values after removing segments shared with higher peaks	Broad or Focal	Amplitude Threshold	TCGA-CH-5737-01A-11D-1574-01	TCGA-CH-5738-01A-11D-1574-01	TCGA-CH-5739-01A-11D-1574-01	TCGA-CH-5740-01A-11D-1574-01	TCGA-CH-5741-01A-11D-1574-01	TCGA-CH-5743-01A-21D-1574-01	TCGA-CH-5744-01A-11D-1574-01	TCGA-CH-5746-01A-11D-1574-01	TCGA-CH-5748-01A-11D-1574-01	TCGA-CH-5750-01A-11D-1574-01	TCGA-CH-5751-01A-11D-1574-01	TCGA-CH-5752-01A-11D-1574-01	TCGA-CH-5753-01A-11D-1574-01	TCGA-CH-5754-01A-11D-1574-01	TCGA-CH-5761-01A-11D-1574-01	TCGA-CH-5762-01A-11D-1574-01	TCGA-CH-5763-01A-11D-1574-01	TCGA-CH-5764-01A-21D-1574-01	TCGA-CH-5765-01A-11D-1574-01	TCGA-CH-5766-01A-11D-1574-01	TCGA-CH-5767-01A-11D-1785-01	TCGA-CH-5768-01A-11D-1574-01	TCGA-CH-5769-01A-11D-1574-01	TCGA-CH-5771-01A-21D-1574-01	TCGA-CH-5772-01A-11D-1574-01	TCGA-CH-5788-01A-11D-1574-01	TCGA-CH-5789-01A-11D-1574-01	TCGA-CH-5790-01A-11D-1574-01	TCGA-CH-5791-01A-11D-1574-01	TCGA-CH-5792-01A-11D-1574-01	TCGA-CH-5794-01A-11D-1574-01	TCGA-EJ-5494-01A-01D-1574-01	TCGA-EJ-5495-01A-01D-1574-01	TCGA-EJ-5496-01A-01D-1574-01	TCGA-EJ-5497-01A-02D-1574-01	TCGA-EJ-5498-01A-01D-1574-01	TCGA-EJ-5499-01A-01D-1574-01	TCGA-EJ-5501-01A-01D-1574-01	TCGA-EJ-5502-01A-01D-1574-01	TCGA-EJ-5503-01A-01D-1574-01	TCGA-EJ-5504-01A-01D-1574-01	TCGA-EJ-5505-01A-01D-1574-01	TCGA-EJ-5506-01A-01D-1574-01	TCGA-EJ-5507-01A-01D-1574-01	TCGA-EJ-5508-01A-02D-1574-01	TCGA-EJ-5509-01A-01D-1574-01	TCGA-EJ-5510-01A-01D-1574-01	TCGA-EJ-5511-01A-01D-1574-01	TCGA-EJ-5512-01A-01D-1574-01	TCGA-EJ-5514-01A-01D-1574-01	TCGA-EJ-5515-01A-01D-1574-01	TCGA-EJ-5516-01A-01D-1574-01	TCGA-EJ-5517-01A-01D-1574-01	TCGA-EJ-5518-01A-01D-1574-01	TCGA-EJ-5519-01A-01D-1574-01	TCGA-EJ-5521-01A-01D-1574-01	TCGA-EJ-5522-01A-01D-1574-01	TCGA-EJ-5524-01A-01D-1574-01	TCGA-EJ-5525-01A-01D-1574-01	TCGA-EJ-5526-01A-01D-1574-01	TCGA-EJ-5527-01A-01D-1574-01	TCGA-EJ-5530-01A-01D-1574-01	TCGA-EJ-5531-01A-01D-1574-01	TCGA-EJ-5532-01A-01D-1574-01	TCGA-EJ-5542-01A-01D-1574-01	TCGA-G9-6332-01A-11D-1785-01	TCGA-G9-6336-01A-11D-1785-01	TCGA-G9-6348-01A-11D-1785-01	TCGA-G9-6356-01A-11D-1785-01	TCGA-G9-6362-01A-11D-1785-01	TCGA-G9-6363-01A-21D-1785-01	TCGA-G9-6364-01A-21D-1785-01	TCGA-G9-6365-01A-11D-1785-01	TCGA-G9-6367-01A-11D-1785-01	TCGA-G9-6370-01A-11D-1785-01	TCGA-G9-6371-01A-11D-1785-01	TCGA-G9-6373-01A-11D-1785-01	TCGA-G9-6378-01A-11D-1785-01	TCGA-G9-6384-01A-11D-1785-01	TCGA-G9-6385-01A-11D-1785-01	TCGA-G9-6494-01A-11D-1785-01	TCGA-G9-6496-01A-11D-1785-01	
Deletion Peak  1	1p31.3  	chr1:60112726-67547583(probes 30951:36278)          	chr1:64975512-65469153(probes 34332:34783)          	chr1:64537659-65517554(probes 33997:34816)          	0.057181	   0.057181		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak  2	1q42.3  	chr1:211288240-239871828(probes 105188:124346)    	chr1:232565778-233393317(probes 118990:119515)    	chr1:225406519-235804008(probes 114333:121167)    	0.014337	   0.014337		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	
Deletion Peak  3	2q22.2  	chr2:133116880-151839573(probes 200868:212085)    	chr2:144416746-144712487(probes 208018:208157)    	chr2:143187649-145986245(probes 207279:208884)    	0.015061	   0.014337		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	
Deletion Peak  4	3p14.1  	chr3:70098707-73023978(probes 308025:310111)        	chr3:71082569-71717832(probes 308694:309122)        	chr3:69627154-74332852(probes 307574:311131)        	1.4667e-07	 1.4667e-07		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	1	1	0	1	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	
Deletion Peak  5	3q13.13 	chr3:95260749-159894716(probes 319313:355487)      	chr3:112272196-112342013(probes 328120:328144)    	chr3:112170067-112415015(probes 328087:328187)    	0.17714	     0.1798		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak  6	3q29    	chr3:176057839-199501827(probes 364390:377681)    	chr3:197922183-198050679(probes 377211:377243)    	chr3:197136321-198225157(probes 376946:377316)    	0.020289	   0.020858		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak  7	5q13.1  	chr5:50711055-78852734(probes 512330:528447)        	chr5:67615333-70698413(probes 522487:523181)        	chr5:54491197-76164821(probes 514752:526827)        	0.0023612	  0.0023612		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak  8	5q21.1  	chr5:82789298-145198970(probes 530824:565390)      	chr5:98129721-98314737(probes 539070:539095)        	chr5:97293737-98318450(probes 538604:539097)        	0.10497	    0.10779		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak  9	6p22.1  	chr6:25018182-28579429(probes 605116:607002)        	chr6:26193856-26309898(probes 605952:606018)        	chr6:26145829-26306450(probes 605932:606015)        	0.083681	   0.083866		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak 10	6q15    	chr6:83657485-110255516(probes 634332:649402)      	chr6:87911950-88031085(probes 636755:636814)        	chr6:79191633-122503137(probes 631777:656172)      	1.3731e-08	 1.3731e-08		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	2	0	0	0	0	0	0	0	1	0	0	0	1	1	1	0	0	0	0	1	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	1	0	1	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	
Deletion Peak 11	8p21.3  	chr8:20154161-28007166(probes 784903:789360)        	chr8:22442009-23034755(probes 785791:785961)        	chr8:20995070-24560791(probes 785252:786910)        	0.0021732	  0.0021732		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	1	0	1	0	1	0	0	1	1	1	1	1	1	0	0	1	1	1	1	1	0	0	0	1	0	1	1	1	0	0	0	1	0	0	1	1	0	0	0	0	0	1	0	0	1	1	1	0	0	0	1	1	1	1	0	1	1	1	1	1	0	1	0	1	0	0	0	1	1	1	0	0	0	0	1	0	1	0	1	1	
Deletion Peak 12	10q23.31	chr10:89607138-90339889(probes 978921:979522)      	chr10:90031296-90339889(probes 979378:979522)      	chr10:80465935-97710084(probes 973963:983959)      	2.3591e-20	 2.3591e-20		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	1	0	0	1	2	0	1	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	1	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	1	0	0	1	0	1	0	0	1	0	1	1	0	0	0	0	0	0	1	2	0	1	0	0	1	1	0	0	0	0	1	0	0	0	0	0	
Deletion Peak 13	11q23.2 	chr11:100824108-122361490(probes 1064518:1078690)	chr11:113348210-113366958(probes 1072437:1072447)	chr11:112619069-117018966(probes 1071955:1075060)	0.010773	   0.011321		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	
Deletion Peak 14	12p13.2 	chr12:10266570-18127159(probes 1092626:1097598)    	chr12:11687207-11939878(probes 1093214:1093582)    	chr12:11066021-13339559(probes 1093050:1094463)    	0.0090844	  0.0081444		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	1	0	0	0	0	1	0	1	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	1	0	0	1	0	0	0	1	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	1	0	0	0	
Deletion Peak 15	13q14.12	chr13:36573237-74956615(probes 1177637:1200664)    	chr13:43840795-45188448(probes 1182493:1183225)    	chr13:35433586-77501095(probes 1176911:1202286)    	2.1091e-05	 1.8861e-05		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	1	0	1	1	1	0	0	0	0	0	0	1	0	1	0	1	0	1	1	0	0	1	0	0	1	1	0	0	0	1	1	0	1	1	0	0	1	0	0	0	0	0	0	1	0	1	1	0	0	1	0	1	0	1	0	0	0	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	1	0	
Deletion Peak 16	16q24.1 	chr16:29336041-88827254(probes 1330543:1359597)    	chr16:83237231-87804935(probes 1356771:1359150)    	chr16:75294694-88827254(probes 1349061:1359597)    	9.4228e-06	 9.5268e-06		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	1	0	0	0	1	0	0	0	1	0	1	1	1	1	0	1	0	1	0	0	0	1	0	1	0	1	1	1	0	0	1	1	0	0	1	1	0	0	0	0	0	0	1	0	1	1	0	0	0	1	0	0	0	1	0	1	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	1	0	0	1	
Deletion Peak 17	17p13.1 	chr17:5340587-59583175(probes 1361942:1389749)      	chr17:6875986-7554432(probes 1362996:1363199)        	chr17:6666837-7544071(probes 1362912:1363196)        	0.012647	   0.012647		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	1	0	0	1	1	1	0	1	0	1	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	1	1	1	0	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	
Deletion Peak 18	17q21.31	chr17:39607677-39995252(probes 1379409:1379561)    	chr17:39820964-39945202(probes 1379495:1379538)    	chr17:38919813-41066272(probes 1379020:1379978)    	1.9473e-05	 1.8861e-05		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	1	0	0	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak 19	18q23   	chr18:48119230-76117153(probes 1428013:1445764)    	chr18:75240929-75485548(probes 1445538:1445539)    	chr18:75066335-75543094(probes 1445442:1445563)    	0.090281	   0.090281		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	1	0	0	1	0	0	0	1	0	1	1	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	1	0	1	0	0	1	0	0	0	0	1	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	
Deletion Peak 20	21q22.3 	chr21:41139146-41973771(probes 1527623:1528381)    	chr21:41754509-41805040(probes 1528120:1528252)    	chr21:38778178-41805040(probes 1525673:1528252)    	1.5795e-16	 1.5795e-16		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	1	0	0	1	0	0	0	1	1	1	1	0	0	1	1	0	0	1	1	0	0	0	0	1	1	0	1	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	1	1	0	0	1	0	0	0	0	1	0	0	0	0	1	1	1	1	0	0	1	1	0	0	0	0	0	
Deletion Peak  1 - CN values	1p31.3  	chr1:60112726-67547583(probes 30951:36278)          	chr1:64975512-65469153(probes 34332:34783)          	chr1:64537659-65517554(probes 33997:34816)          	0.057181	   0.057181		Actual Copy Change Given	0.021043	-0.0047964	0.00027728	-0.65034	0.015866	0.0013868	0.0049969	0.0056367	0.004719	0.036247	-0.00069303	0.0019418	-0.71158	0.039054	0.017404	-0.040616	0.0075	0.0032571	0	0.15831	-0.012576	0.0087528	-0.54098	-0.092478	-0.0087146	0.0097276	0.013074	-0.0070576	-0.6642	0.025952	-0.5525	-0.01037	0.021603	0.00069327	-0.014228	0.0080567	-0.41113	-0.029175	0.013911	-0.015879	-0.085192	0.0062508	0.010564	0.013213	0.0036076	0.0046699	-0.0081624	-0.0034627	-0.0027178	-0.041024	0.0097276	-0.028081	0.0013868	-0.0037395	0.001803	0.024969	0.014002	0.005971	-0.0071958	-0.0070576	-0.052644	0.017824	-0.025577	0.0051359	-0.0013858	-0.37553	0	-0.0088526	-0.0048461	-0.0055375	0.0029133	-0.0099565	-0.0064169	0.00055459	0.0075	-0.014503	0.0011093	0.0038292	0.010217	0.0068044	-0.0049844	0.013412	
Deletion Peak  2 - CN values	1q42.3  	chr1:211288240-239871828(probes 105188:124346)    	chr1:232565778-233393317(probes 118990:119515)    	chr1:225406519-235804008(probes 114333:121167)    	0.014337	   0.014337		Actual Copy Change Given	-0.67802	-0.0020286	-0.021373	-0.6667	0.026654	0.018243	-0.007472	0.002864	-0.029661	0.0092371	-0.061689	-0.0096292	0.015866	-0.052126	-0.018765	-0.005814	0.0040243	-0.59039	-0.0053992	0.17001	-0.0041663	0	0.00013863	-0.0042929	-0.018353	-0.0026322	0.010389	0	-0.0098185	0.0058309	0.0070305	-0.012576	0.020903	0.00097064	0.0052749	0.0055529	-0.00097017	-0.0086861	-0.0056956	-0.011611	0.013492	-0.0015243	0.0026357	-0.003372	-0.0018014	0.00055459	-0.0063668	0.025952	-0.0019764	-0.56382	0.013772	-0.026441	0.0041632	-0.53784	-0.66836	0.026654	-0.012547	-0.034205	-0.045364	-0.051336	-0.031745	-0.014196	0.006109	-0.010922	0.0041632	0.0062481	-0.024018	-0.0123	-0.039529	0.61952	0.010285	-0.53561	-0.0039281	0.00013863	0.0083351	-0.0032681	-0.0089906	0.0049127	0.019994	-0.0090771	0.001803	-0.0077302	
Deletion Peak  3 - CN values	2q22.2  	chr2:133116880-151839573(probes 200868:212085)    	chr2:144416746-144712487(probes 208018:208157)    	chr2:143187649-145986245(probes 207279:208884)    	0.015061	   0.014337		Actual Copy Change Given	0.03031	-0.001613	0.0037465	0.018803	0.010285	-0.0092666	0.0037465	-0.0055924	-0.12123	0.036529	-0.073406	0.0019147	-0.04048	0.0016642	0.011297	-0.0041773	0.014609	0.01447	0.00458	0.013353	-0.80676	-0.0013858	0.010424	-0.010922	0.081177	-0.75866	-0.0099565	0.014609	0.00041593	-0.063301	0.019878	0.0026357	0.019503	0.017963	0.011818	0.020763	0.015447	0.02525	0.023145	-0.042652	-0.2397	-0.005261	-0.00027724	0.010354	0.0073938	-0.52194	0.022304	-0.015306	0.0099695	-0.54068	-0.037898	0.0052749	0.028481	-0.14862	0.016006	-0.10026	0	0	-0.21367	0.059854	0.025414	0.00083195	-0.14026	0.015587	0.013772	0.018943	0.012795	-0.0092666	0.0055529	0.004719	0.0351	0.0068044	-0.0046197	-0.01106	-0.00018072	-0.0007918	0.0069435	-0.0027161	-0.0076776	0.038065	0.012655	-0.81191	
Deletion Peak  4 - CN values	3p14.1  	chr3:70098707-73023978(probes 308025:310111)        	chr3:71082569-71717832(probes 308694:309122)        	chr3:69627154-74332852(probes 307574:311131)        	1.4667e-07	 1.4667e-07		Actual Copy Change Given	0.01646	-0.53395	-0.69351	-0.0029091	-0.76072	-0.0056757	-0.0045695	-0.24233	0.010564	-0.027791	0.19832	-0.82748	-0.73714	0.071248	0.62551	0.0036076	0.0021435	0.0072217	-0.0040162	0.017404	-0.0011087	-0.0048461	0.015447	0.11726	0.046133	0.00083195	0.0094325	-0.0012473	0.27647	0.0073609	-0.59257	0.0098669	0.0037465	-0.011749	-0.43832	0.0072217	0.004719	-0.13096	0.0030522	0.050392	0.071104	-0.47342	-0.046177	0.05025	0.00013863	-0.078411	-0.37954	-0.033814	0.019046	0.27127	-0.0030475	0.019503	-0.71666	0.14935	-0.67214	0.0087528	0.022865	-0.0049323	0.016425	-0.0019399	0.011284	0.00082174	0.073546	0.011679	-0.57782	-0.77626	-0.012851	0.00458	-0.025756	-0.73617	-0.47194	-0.6095	-0.014828	0.00027728	-0.013953	0.012237	0.0079175	-0.0014697	-0.14606	0.0065262	0.072827	0.073032	
Deletion Peak  5 - CN values	3q13.13 	chr3:95260749-159894716(probes 319313:355487)      	chr3:112272196-112342013(probes 328120:328144)    	chr3:112170067-112415015(probes 328087:328187)    	0.17714	     0.1798		Actual Copy Change Given	0.067805	0.0071326	-0.65575	0.020203	-0.040345	0.0068044	0.0080567	-0.0018563	0.020623	0.0212	0.24981	0.0072217	0.031014	0.057083	0.038771	0.012237	0.00083195	0.016006	-0.0038779	0.040468	-0.82546	0.0051359	0	0.10519	0.077718	0.72867	0.010285	0.0051359	0.31466	0.0033299	-0.00032157	0.0093098	-0.0067813	0.0052749	0	0.038065	0.016845	0.044715	0.032704	0.014898	0.0558	-0.46568	-0.0013858	0.063821	0.0066653	0.018663	-0.35373	-0.033814	0.016388	0.276	0.05908	-0.0018014	0.015587	0.14578	-0.64959	0.0087528	-0.00069303	0.050688	0.041317	0.064797	0.047576	0.012673	0.24295	0.015175	0.0097276	-0.048748	-0.040345	-0.016017	0.004719	0.0029133	0.57237	-0.0030475	-0.012901	-0.0069941	-0.012335	0.0072217	0.0079175	-0.0093502	-0.14606	-0.069228	-0.047531	-0.031711	
Deletion Peak  6 - CN values	3q29    	chr3:176057839-199501827(probes 364390:377681)    	chr3:197922183-198050679(probes 377211:377243)    	chr3:197136321-198225157(probes 376946:377316)    	0.020289	   0.020858		Actual Copy Change Given	-0.015191	0.0019917	0.030169	-0.18383	-0.038442	0.026654	0.013772	-0.16896	-0.075612	-0.074528	0.2061	0.015866	-0.021235	1.0371	0.034113	-0.15835	0.0075	-0.17158	0.0097276	0.032563	-0.0051227	-0.70971	-0.56724	0.12241	-0.71862	0.758	-0.0047079	0.0022193	0.24339	-0.0040162	-0.042696	-0.028765	-0.014503	-0.041159	-0.44167	-0.0077482	-0.039801	-0.060211	0.0040243	-0.019863	-0.010232	-0.028081	0.0033299	0.0060251	-0.012162	-0.0077482	0.2885	-0.031359	0.011642	0.20519	-0.012576	0.0057463	-0.054286	0.10658	-0.029311	0.22808	-0.03286	-0.14321	0.81747	-0.045228	-0.038011	-0.032723	0.1795	-0.04077	-0.33399	-0.76107	0.023566	0.010424	-0.23043	0.017544	-0.44917	-0.045093	0.0018914	0.00097064	0.0077783	-0.016154	-0.047666	-0.0018853	-0.032381	0.013162	0.055373	0.0064459	
Deletion Peak  7 - CN values	5q13.1  	chr5:50711055-78852734(probes 512330:528447)        	chr5:67615333-70698413(probes 522487:523181)        	chr5:54491197-76164821(probes 514752:526827)        	0.0023612	  0.0023612		Actual Copy Change Given	0.035242	0.0053144	0.0012481	0.020903	-0.033132	-0.00097017	0.00069327	-0.0015335	0.020203	0.0019587	-0.72772	0.011958	-0.025209	-0.01354	-0.5625	-0.14194	-0.0067813	-0.15148	-0.73222	-0.84225	0.0083622	-0.09089	0.00097064	-0.058193	-0.11116	0.0026357	0.0084743	0.013074	0.0091705	-0.18308	0.00037159	0.016985	0.0011163	-0.016429	-0.029857	-0.0060904	0.024829	-0.19249	0.016545	0.0095883	-0.13982	0.0080567	-0.010865	-0.27045	0.00055459	-0.53388	0.010703	-0.046718	0.0073241	-0.039801	0.02511	-0.36204	0.02539	-0.022332	-0.6346	-0.15899	0.0066653	0.043237	-0.84579	-0.46722	0.031355	0.027778	0.0072217	0.020903	0.001803	0.095944	0.044857	0.0027745	0.044432	-0.0022168	-0.44717	0	-0.0053112	-0.0047079	-0.006505	-0.00014778	-0.017666	-0.0087982	-0.012918	0.030451	0.071104	0.035583	
Deletion Peak  8 - CN values	5q21.1  	chr5:82789298-145198970(probes 530824:565390)      	chr5:98129721-98314737(probes 539070:539095)        	chr5:97293737-98318450(probes 538604:539097)        	0.10497	    0.10779		Actual Copy Change Given	-0.73134	0.0053144	0.0012481	0.018523	-0.016704	-0.00097017	0.00069327	-0.0015335	-0.23264	0.0019587	-0.080008	0.011958	0.0072217	0.00069327	-0.63982	0.010424	-0.0026322	-0.013127	0.014051	-0.22121	0.02806	-0.09089	0.00097064	-0.058193	-0.0022168	-0.74046	-0.0023553	0.0070826	0.044432	-0.18308	0.025205	0.016705	0.0011163	-0.0019399	-0.029857	-0.013127	0.019923	-0.32135	0.016545	0.073115	-0.13982	-0.46153	-0.010865	-0.27045	0.022725	-1.0199	0.010703	-0.046718	0.020866	-0.026441	0.02511	0.018383	0.049554	0.0075	0.032704	-0.062629	0.0066653	-0.026722	0.011121	0.04429	0.045023	0.027778	-0.50484	0.017824	0.001803	0.0031095	0.035665	0.0027745	0.05523	-0.0022168	-0.0082062	0	-0.0053112	-0.0047079	-0.006505	0.0063871	-0.0062972	-0.0087982	-0.012918	-0.0084385	0.02539	0.035583	
Deletion Peak  9 - CN values	6p22.1  	chr6:25018182-28579429(probes 605116:607002)        	chr6:26193856-26309898(probes 605952:606018)        	chr6:26145829-26306450(probes 605932:606015)        	0.083681	   0.083866		Actual Copy Change Given	0.022585	0.0019917	-0.015604	-0.68579	-0.0066432	0.0022193	-0.0051227	-0.0079411	0.031577	-0.0096637	0.24731	-1.5	-0.020001	0.033408	0.01433	0.0871	-0.014366	-0.013969	-0.68961	0.015447	0.003191	-0.0094046	-0.031905	-0.0024938	-0.022744	-0.0096806	0.012097	-0.077078	-0.010232	0.019083	-0.0051669	-0.0041546	-0.036946	-0.023429	-0.0091286	-0.015191	-0.00055444	-0.43355	-0.0056757	-0.026714	-0.12056	-0.026714	-0.0089906	-0.18244	-0.0031859	0.00097064	-0.005814	0.63792	0.00034756	-0.011749	-0.019177	-0.35065	-0.015466	0.001803	-0.016567	-0.0076101	-0.0081624	-0.012152	0.0023581	-0.017109	-0.0078629	-0.0020784	-0.0067813	-0.0087146	-0.035585	-0.035585	-0.010922	-0.018628	-0.0066432	-0.026714	-0.016017	-0.019314	-0.042023	-0.011473	-0.0063668	-0.0067813	-0.090229	-0.0053447	0.012866	-0.020687	-0.049262	-0.025562	
Deletion Peak 10 - CN values	6q15    	chr6:83657485-110255516(probes 634332:649402)      	chr6:87911950-88031085(probes 636755:636814)        	chr6:79191633-122503137(probes 631777:656172)      	1.3731e-08	 1.3731e-08		Actual Copy Change Given	-1.459	0.0037604	0.0055529	0.037217	-0.045499	-0.0061211	-0.0013858	-0.0037944	-0.37439	0.052543	-0.12636	0.016565	-0.31926	-0.59886	-0.64884	-0.005261	-0.068127	-0.019589	-0.0057359	-0.53835	-0.8103	0.0027745	0.0073609	-0.05037	-0.0073339	-0.76777	0.00027728	-0.032041	0.021043	-0.36454	0.024082	0.026233	-0.014778	-0.0059522	0.018523	-0.23435	0.02913	0.023847	0.023426	0.032602	-0.66031	-0.46462	-0.0063757	-0.15841	0.004207	-0.52125	0.025671	-0.76757	0.0019051	-0.5427	0.050677	-0.30193	-0.14541	-0.50888	-0.65668	0	0.018383	0.036664	0.001803	0.0012481	0.048854	0.024548	-0.2501	0.024268	-0.07067	-0.079609	-0.027945	0.0027745	0.011539	-0.7196	-0.026304	0.0029133	-0.012074	0.0037465	-0.013127	0.0079175	-0.0013858	-0.0085222	-0.065026	0.0068044	-0.036401	-0.80812	
Deletion Peak 11 - CN values	8p21.3  	chr8:20154161-28007166(probes 784903:789360)        	chr8:22442009-23034755(probes 785791:785961)        	chr8:20995070-24560791(probes 785252:786910)        	0.0021732	  0.0021732		Actual Copy Change Given	0.030169	-0.012388	-0.68013	0.25433	-0.73766	-0.0076101	-0.56077	-0.015934	-0.055634	-0.69608	-0.74078	-0.80534	-0.75253	-0.4407	-0.6604	-0.13975	-0.074144	-0.40454	-0.73442	-0.85377	-0.85448	-0.72066	0.0084743	-0.29011	-0.066922	-0.78707	-0.022744	-0.80344	-0.7125	-0.31167	0.013169	0.0054139	-0.2682	-0.47902	-0.10697	-0.040209	-0.44243	-0.36816	-0.039529	-0.037354	-0.15592	-0.016704	-0.0092666	-0.59107	-0.13523	0.10979	-0.36612	-0.74438	-0.34793	0.19914	-0.065776	-0.026167	-0.74145	-0.52113	-0.64067	-0.34412	-0.016688	-0.97835	-0.87369	-0.56186	-0.34674	-0.53124	-0.13755	-0.67334	-0.082934	-0.77467	0.05637	0.0079175	-0.24849	-0.3282	-0.44868	-0.59458	-0.0068315	-0.0030475	-0.0011087	-0.099601	-0.69567	-0.042735	-0.42467	0.070243	-0.51135	-0.79047	
Deletion Peak 12 - CN values	10q23.31	chr10:89607138-90339889(probes 978921:979522)      	chr10:90031296-90339889(probes 979378:979522)      	chr10:80465935-97710084(probes 973963:983959)      	2.3591e-20	 2.3591e-20		Actual Copy Change Given	-0.66974	0.0062981	-0.0091286	-0.47776	-1.5	-0.0013858	-1.1274	-0.019643	-0.01849	-0.016	-0.13587	-0.032996	-0.0069195	-0.60671	1.7422	0	-0.00013862	-0.058596	0	-0.55025	-0.0060904	-0.00041585	-0.58696	-0.119	0.019923	0.72036	0.0087528	-0.18421	-0.69803	-0.020138	-0.53493	-0.0033243	-0.19687	0.010513	-0.020876	0.0069435	-0.39586	-0.015054	0.004719	-0.010784	-0.012576	0.0038854	-0.0087146	-1.3352	0.0079872	0.012516	-0.36359	0.030873	-0.0026688	-1.1491	-0.010508	-0.34228	-0.016154	-0.20883	-0.63491	-0.18873	-0.82407	-0.59934	-0.0063668	-0.0083005	-0.1405	0.017963	-0.023703	0.0027745	-1.131	-1.5	0.012795	-0.35715	-0.075878	0.0024969	-0.90745	-0.52818	0.010095	-0.0041546	0.0092593	0.00458	-0.51753	0.0057467	0.030724	0.1628	0.10002	0.040245	
Deletion Peak 13 - CN values	11q23.2 	chr11:100824108-122361490(probes 1064518:1078690)	chr11:113348210-113366958(probes 1072437:1072447)	chr11:112619069-117018966(probes 1071955:1075060)	0.010773	   0.011321		Actual Copy Change Given	-0.024388	0.00074315	-0.0034627	0	0.017264	0.00083195	0.0030522	-0.0019948	-0.041689	-0.0093877	0.1365	-0.00055444	-0.020824	-0.0034627	-0.648	-0.012713	-0.0031679	-0.010943	0.0012037	0.022611	-0.0085766	0.015384	-1.2222	0.011487	-0.0017887	-0.037626	-0.0073702	-0.45533	-0.039532	-0.20286	0.019178	0.0059649	0.028157	0.010006	-0.0030475	0.010006	-0.032804	-0.0095426	-0.012713	-0.012989	-0.55637	-0.0022168	0.0041632	0.0049969	-0.015879	-0.44329	-0.016017	0.32656	0.0021827	-0.0042929	-0.034631	0.016839	0.027076	-0.53083	-0.0096806	-0.0068429	-0.012162	-0.0014382	0.0097276	0.014423	-0.22242	0	0.035806	-0.0123	0.0050181	0.0083351	-0.0094046	0.0093098	-0.0095426	0	-0.40573	-0.0026322	0.010374	0.0090312	0.0051144	0.00041593	0.0098669	0.00037268	0.028413	0.010006	-0.45993	0.0031042	
Deletion Peak 14 - CN values	12p13.2 	chr12:10266570-18127159(probes 1092626:1097598)    	chr12:11687207-11939878(probes 1093214:1093582)    	chr12:11066021-13339559(probes 1093050:1094463)    	0.0090844	  0.0081444		Actual Copy Change Given	0.008892	-0.0017516	0	0.0091705	0.017684	-0.0016629	-0.55136	0.0081406	-0.14836	0.030327	-0.13975	-0.77363	0.036512	-0.66836	-0.64462	0.0015255	-0.0041546	0.020343	0.0033299	-0.80914	-0.020824	-0.70181	0.0070826	0.012795	0.10118	-0.034904	-0.01106	-0.023977	0.0086135	-0.56037	0.019738	-0.0051227	0.021183	0.010285	0.0048579	-0.02603	0.010564	-0.34435	0.007452	-0.011611	0.04429	-0.0030475	-0.0018014	-0.60632	0.019223	0.020763	-0.3994	0.014051	0.0057942	-0.79892	-0.059942	0.0023581	-0.0016629	-0.50991	-0.61844	-0.053881	-0.48376	0.017834	0.010424	-0.48691	0.021627	0.006109	-0.10749	-0.0043181	-0.00037956	0.011539	-0.024911	-0.007472	-0.0029091	-0.71355	0.0062481	-0.5794	-0.009044	0.010703	-0.0060904	0.0090312	0.0068044	0.0093647	-0.40788	0.004719	-0.01571	-0.012931	
Deletion Peak 15 - CN values	13q14.12	chr13:36573237-74956615(probes 1177637:1200664)    	chr13:43840795-45188448(probes 1182493:1183225)    	chr13:35433586-77501095(probes 1176911:1202286)    	2.1091e-05	 1.8861e-05		Actual Copy Change Given	-0.79528	-0.035808	-0.65501	-0.64233	-0.70559	0.0011093	0.0020805	8.3606e-05	-0.25138	0.067822	-0.15038	-0.80136	-0.17386	-0.62493	0.034536	-0.34136	-0.0008316	-0.50038	-0.72659	0.01246	-0.049019	-0.72349	0.0037465	-0.29461	-0.39219	-0.77626	-0.013953	-0.04983	-0.0036011	-0.36272	-0.52923	-0.010784	-0.37076	-0.43539	-0.093403	0.015308	-0.43061	0.0093098	-0.084262	0.00083195	-0.23435	-0.0044312	0.0013868	-0.62751	0.0011093	-0.53244	-0.36997	-0.14181	-0.19416	-0.57615	0.004719	-0.34893	0.010842	-0.51825	-0.0077482	-0.29957	0.018663	-0.013017	-0.85074	-0.038823	-0.4567	-0.052126	-0.22478	-0.017685	0.012934	-0.01037	-0.021373	-0.36374	-0.0091286	-0.0013858	0.0024969	0.00013863	-0.5272	-0.0096806	-0.005814	0.00027728	-0.0041546	-0.24844	-0.0094721	0.0013868	-0.55617	-0.016508	
Deletion Peak 16 - CN values	16q24.1 	chr16:29336041-88827254(probes 1330543:1359597)    	chr16:83237231-87804935(probes 1356771:1359150)    	chr16:75294694-88827254(probes 1349061:1359597)    	9.4228e-06	 9.5268e-06		Actual Copy Change Given	-0.058058	-0.014591	-0.70037	-0.049559	-0.020275	-0.010646	-0.44749	-0.013732	-0.084528	-0.092197	-0.69667	-0.046989	-0.78454	-0.76595	-0.70765	-0.40671	-0.0091286	-0.63916	-0.0047561	-0.66559	-0.056307	-0.018216	-0.03286	-0.32263	-0.26868	-0.84707	-0.0018014	-0.82472	-0.76655	-0.31804	-0.062269	-0.005261	-0.40738	-0.50805	-0.0099565	-0.28418	-0.49923	-0.42746	-0.065179	-0.066118	-0.016154	-0.028218	-0.023018	-0.10171	-0.3856	-0.093403	-0.41069	-0.48984	-0.01619	-0.28798	-0.13445	-0.4381	-0.12135	-0.051856	-0.046854	-0.42517	-0.097653	-0.55016	-0.93489	-0.12525	-0.38155	-0.078028	-0.05469	-0.025483	-0.028765	0.011818	-0.074945	0.0083351	-0.047666	-0.75935	0.023566	0.00097064	0.026182	-0.0036011	0.027076	-0.011361	-0.67637	0.011873	-0.33072	0.017124	-0.026304	-0.86872	
Deletion Peak 17 - CN values	17p13.1 	chr17:5340587-59583175(probes 1361942:1389749)      	chr17:6875986-7554432(probes 1362996:1363199)        	chr17:6666837-7544071(probes 1362912:1363196)        	0.012647	   0.012647		Actual Copy Change Given	-0.036679	-0.00064318	-0.012162	-0.024661	0.023426	-0.011198	-0.01037	-0.0058688	-0.013953	-0.061404	-0.49559	-0.018011	-0.015741	-0.69133	-0.66087	-0.36227	-0.0123	-0.53946	-0.015604	-0.6041	-0.033269	-0.0040162	-0.023429	0.018663	-0.029994	-0.024524	-0.016841	-0.81999	-0.7702	0.036229	-0.63664	-0.026441	-0.046583	-0.02209	-0.020961	-0.027276	-0.043331	-0.068041	-0.029448	-0.03395	-0.047936	-0.00055444	-0.027945	-0.65473	-0.037082	-0.044415	-0.068931	0.016425	-0.011785	-0.56067	-0.09261	-0.022881	-0.055634	-0.04211	-0.64133	-0.39341	-0.51146	-0.12212	-0.90563	-0.37516	-0.5299	-0.30396	-0.033677	-0.092478	-0.016506	-0.081871	-0.073209	-0.016979	-0.0029091	-0.0048461	-0.023155	-0.012851	0.012465	0.0015255	0.0090312	-0.022469	-0.68679	0.017879	-0.006158	-0.019177	-0.40381	-0.036344	
Deletion Peak 18 - CN values	17q21.31	chr17:39607677-39995252(probes 1379409:1379561)    	chr17:39820964-39945202(probes 1379495:1379538)    	chr17:38919813-41066272(probes 1379020:1379978)    	1.9473e-05	 1.8861e-05		Actual Copy Change Given	-0.057789	-0.043146	-0.59048	-0.022469	0.013074	-0.00013862	-0.53409	0.0038303	-0.021784	-0.69576	-0.12017	-0.74612	0.0013868	-0.12291	0.015447	-0.042381	0.0083351	-0.049559	0.0041632	-0.070001	-0.03245	-0.70109	-0.018353	0.018663	-0.03286	-0.014228	0.0062481	-0.016841	-0.082137	0.032845	-0.084231	-0.030677	-0.027124	-0.0067813	-0.010094	-0.16421	-0.035721	-0.087447	-0.037762	-0.032041	-0.035721	0.0013868	-0.016704	-0.64321	-0.023155	-0.05442	-0.058462	-0.56694	0.0089945	-0.006505	-0.090626	-0.12343	-0.10237	-0.010647	-0.049925	-0.3875	-0.043873	-0.41266	-0.072408	-0.091949	-0.012508	-0.11822	-0.025756	-0.07921	-0.5793	-0.041295	-0.14824	-0.36906	-0.076812	-0.048072	-0.019452	-0.028765	0.0054688	-0.00055444	0.012795	-0.047532	-0.057923	0.025586	-0.019519	-0.015054	-0.0094046	-0.050584	
Deletion Peak 19 - CN values	18q23   	chr18:48119230-76117153(probes 1428013:1445764)    	chr18:75240929-75485548(probes 1445538:1445539)    	chr18:75066335-75543094(probes 1445442:1445563)    	0.090281	   0.090281		Actual Copy Change Given	-0.030216	-0.019402	-0.039529	-0.51835	0.024127	-0.011611	-0.51166	-0.015659	-0.016224	-0.054134	-0.38649	-0.0098185	-0.74768	-0.71754	-0.65575	-0.37718	0.030873	-0.016154	-0.014641	-0.058327	0.0016642	-0.74942	-0.0044312	-0.074277	-0.10368	-0.064716	-0.088507	-0.048207	-0.29343	-0.025209	0.026328	-0.0033243	-0.2642	-0.0026348	0.010703	-0.0034627	-0.010508	0.0066653	-0.028355	-0.06048	-0.32036	-0.012162	-0.0080244	-0.71087	-0.0095426	-0.021647	0.001803	-0.7072	0.0053772	-0.5853	-0.016567	-0.025756	-0.7694	-0.21082	0.0097276	-0.03681	0.0011093	-0.51516	-0.88398	0.011121	-0.35713	-0.0041546	0.0027745	-0.061689	-0.041702	-0.024798	-0.034223	-0.3634	-0.0094331	-0.014641	0.0022193	0.012655	0.0095378	0.0016642	0.010424	-0.0038779	-0.68122	-0.26716	-0.40677	0.0023581	-0.029038	0.012714	
Deletion Peak 20 - CN values	21q22.3 	chr21:41139146-41973771(probes 1527623:1528381)    	chr21:41754509-41805040(probes 1528120:1528252)    	chr21:38778178-41805040(probes 1525673:1528252)    	1.5795e-16	 1.5795e-16		Actual Copy Change Given	-0.032951	0.00060447	-0.021098	0.0087528	-0.73029	-0.0042929	0.0019418	-0.40145	0.0069092	-0.0030306	-0.11647	-0.8126	-0.73854	-0.67985	-0.6508	-0.012162	0.0095883	-0.60051	-0.75371	-0.042517	0.010285	-0.72703	-0.56396	-0.060664	0.07254	-0.01904	-0.021921	-0.83519	-0.75132	0.013213	-0.59354	-0.010646	-0.1067	-0.5037	-0.42167	-0.0036011	-0.45747	0.0055529	0.00083195	-0.05037	0.00027728	-0.00013862	-0.020412	0.00089306	-0.048613	-0.015329	-0.0024938	0.0038854	-0.077828	-0.044822	-0.055499	-0.6069	-0.07401	-0.013815	-0.62474	-0.58823	-0.50277	-0.12883	1.503	-0.56929	-0.0042695	-0.034471	0	-0.01037	-0.54776	0.0070826	-0.020961	-0.0073339	-0.022606	-0.73416	-0.45993	-0.58355	-0.53228	0.0029133	0.0011093	-0.65407	-0.68296	-0.00063839	0.0052069	-0.020894	0.010703	0.0028332	
