Broad GDAC analyses__2012_05_25__brca

Tumor	BCR	Clinical	CN	Methylation	mRNA	mRNAseq	miR	miRseq	RPPA	MAF
BRCA	871	857	833	858	529	777	0	781	408	507

Note that the links below require Broad internal Firehose login credentials.

	Pipeline	NotRunnable	Successful
1	Aggregate_Clusters	0	1
2	CopyNumber_GeneBySample	0	1
3	CopyNumber_Gistic2	0	1
4	Correlate_Clinical_vs_miR	1	0
5	Correlate_Clinical_vs_Molecular_Signatures	0	1
6	Correlate_Clinical_vs_mRNA	0	1
7	Correlate_Clinical_vs_Mutation	0	1
8	Correlate_CopyNumber_vs_miR	1	0
9	Correlate_CopyNumber_vs_mRNA	0	1
10	Correlate_CopyNumber_vs_mRNAseq	0	1
11	Correlate_Methylation_vs_mRNA	0	1
12	Methylation_Clustering_CNMF	0	1
13	Methylation_Preprocess	0	1
14	miRseq_Clustering_CNMF	0	1
15	miRseq_Clustering_Consensus	0	1
16	miRseq_Preprocess	0	1
17	miR_Clustering_CNMF	1	0
18	miR_Clustering_Consensus	1	0
19	miR_FindDirectTargets	1	0
20	miR_Preprocess	1	0
21	mRNAseq_Clustering_CNMF	0	1
22	mRNAseq_Clustering_Consensus	0	1
23	mRNAseq_Preprocess	0	1
24	mRNA_Clustering_CNMF	0	1
25	mRNA_Clustering_Consensus	0	1
26	mRNA_Preprocess_Median	0	1
27	Mutation_Assessor	0	1
28	Mutation_Significance	0	1
29	Pathway_FindEnrichedGenes	0	1
30	Pathway_Paradigm_Expression	0	1
31	Pathway_Paradigm_Expression_CopyNumber	0	1
32	RPPA_Clustering_CNMF	0	1
33	RPPA_Clustering_Consensus	0	1
	Total	6	27

This table generated on Mon Jun 18 12:32:48 2012