Broad GDAC analyses__2012_05_25__luad

Tumor	BCR	Clinical	CN	Methylation	mRNA	mRNAseq	miR	miRseq	RPPA	MAF
LUAD	409	292	265	347	32	129	0	95	0	229

Note that the links below require Broad internal Firehose login credentials.

	Pipeline	NotRunnable	Successful	Unsuccessful
1	Aggregate_Clusters	0	1	0
2	CopyNumber_GeneBySample	0	1	0
3	CopyNumber_Gistic2	0	1	0
4	Correlate_Clinical_vs_miR	1	0	0
5	Correlate_Clinical_vs_Molecular_Signatures	0	1	0
6	Correlate_Clinical_vs_mRNA	0	1	0
7	Correlate_Clinical_vs_Mutation	1	0	0
8	Correlate_CopyNumber_vs_miR	1	0	0
9	Correlate_CopyNumber_vs_mRNA	0	1	0
10	Correlate_CopyNumber_vs_mRNAseq	0	1	0
11	Correlate_Methylation_vs_mRNA	0	1	0
12	Methylation_Clustering_CNMF	0	1	0
13	Methylation_Preprocess	0	1	0
14	miRseq_Clustering_CNMF	0	1	0
15	miRseq_Clustering_Consensus	0	1	0
16	miRseq_Preprocess	0	1	0
17	miR_Clustering_CNMF	1	0	0
18	miR_Clustering_Consensus	1	0	0
19	miR_FindDirectTargets	1	0	0
20	miR_Preprocess	1	0	0
21	mRNAseq_Clustering_CNMF	0	1	0
22	mRNAseq_Clustering_Consensus	0	1	0
23	mRNAseq_Preprocess	0	1	0
24	mRNA_Clustering_CNMF	0	1	0
25	mRNA_Clustering_Consensus	0	1	0
26	mRNA_Preprocess_Median	0	1	0
27	Mutation_Assessor	1	0	0
28	Mutation_Significance	0	0	1
29	Pathway_FindEnrichedGenes	1	0	0
30	Pathway_Paradigm_Expression	0	1	0
31	Pathway_Paradigm_Expression_CopyNumber	0	1	0
32	RPPA_Clustering_CNMF	1	0	0
33	RPPA_Clustering_Consensus	1	0	0
	Total	11	21	1

This table generated on Mon Jun 18 12:32:51 2012