Broad GDAC analyses__2012_05_25__pancancer

Tumor	BCR	Clinical	CN	Methylation	mRNA	mRNAseq	miR	miRseq	RPPA	MAF
PANCANCER	6456	5271	5386	5325	2218	2536	1055	2844	2087	2784

Note that the links below require Broad internal Firehose login credentials.

	Pipeline	NotRunnable	Runnable	Successful	Unsuccessful
1	Aggregate_Clusters	0	1	0	0
2	CopyNumber_GeneBySample	0	0	0	1
3	CopyNumber_Gistic2	0	0	0	1
4	Correlate_Clinical_vs_miR	0	0	1	0
5	Correlate_Clinical_vs_Molecular_Signatures	1	0	0	0
6	Correlate_Clinical_vs_mRNA	0	0	0	1
7	Correlate_Clinical_vs_Mutation	1	0	0	0
8	Correlate_CopyNumber_vs_miR	1	0	0	0
9	Correlate_CopyNumber_vs_mRNA	1	0	0	0
10	Correlate_CopyNumber_vs_mRNAseq	1	0	0	0
11	Correlate_Methylation_vs_mRNA	0	0	0	1
12	Methylation_Clustering_CNMF	1	0	0	0
13	Methylation_Preprocess	0	0	0	1
14	miRseq_Clustering_CNMF	1	0	0	0
15	miRseq_Clustering_Consensus	1	0	0	0
16	miRseq_Preprocess	1	0	0	0
17	miR_Clustering_CNMF	0	0	1	0
18	miR_Clustering_Consensus	0	0	1	0
19	miR_FindDirectTargets	0	0	1	0
20	miR_Preprocess	0	0	1	0
21	mRNAseq_Clustering_CNMF	1	0	0	0
22	mRNAseq_Clustering_Consensus	1	0	0	0
23	mRNAseq_Preprocess	0	0	0	1
24	mRNA_Clustering_CNMF	0	0	0	1
25	mRNA_Clustering_Consensus	0	0	0	1
26	mRNA_Preprocess_Median	0	0	1	0
27	Mutation_Assessor	1	0	0	0
28	Mutation_Significance	0	0	0	1
29	Pathway_FindEnrichedGenes	1	0	0	0
30	Pathway_Paradigm_Expression	0	0	0	1
31	Pathway_Paradigm_Expression_CopyNumber	1	0	0	0
32	RPPA_Clustering_CNMF	1	0	0	0
33	RPPA_Clustering_Consensus	1	0	0	0
	Total	16	1	6	10

This table generated on Mon Jun 18 12:32:53 2012