Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
getCNExpCorrelation1.reducedseg	GBM.RS.tsv	gdac.broadinstitute.org_GBM.CopyNumber_GeneBySample.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00289:50	Correlate_CopyNumber_vs_miR_2012052500	GBM.CORS.tsv	Correlation_result	Level_4	tsv	gdac.broadinstitute.org_GBM.Correlate_CopyNumber_vs_miR.Level_4.2012052500.0.0	yes
getCNExpCorrelation1.reducedseg	GBM.RS.tsv	gdac.broadinstitute.org_GBM.CopyNumber_GeneBySample.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00289:50	Correlate_CopyNumber_vs_miR_2012052500	STATS.QA.tsv	Correlation_result	Level_4	tsv	gdac.broadinstitute.org_GBM.Correlate_CopyNumber_vs_miR.Level_4.2012052500.0.0	yes
getCNExpCorrelation1.reducedseg	GBM.RS.tsv	gdac.broadinstitute.org_GBM.CopyNumber_GeneBySample.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00289:50	Correlate_CopyNumber_vs_miR_2012052500	OUTPUT.CORS.png	Correlation-CopyNumber_Expression_miRNA	Level_4	png	gdac.broadinstitute.org_GBM.Correlate_CopyNumber_vs_miR.Level_4.2012052500.0.0	yes
getCNExpCorrelation1.reducedseg	GBM.RS.tsv	gdac.broadinstitute.org_GBM.CopyNumber_GeneBySample.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00289:50	Correlate_CopyNumber_vs_miR_2012052500	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_GBM.Correlate_CopyNumber_vs_miR.Level_4.2012052500.0.0	yes
getCNExpCorrelation1.reducedseg	GBM.RS.tsv	gdac.broadinstitute.org_GBM.CopyNumber_GeneBySample.Level_4.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00289:50	Correlate_CopyNumber_vs_miR_2012052500	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_GBM.Correlate_CopyNumber_vs_miR.Level_4.2012052500.0.0	yes
getCNExpCorrelation1.mrnaexp	GBM.mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_GBM.Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00289:50	Correlate_CopyNumber_vs_miR_2012052500	GBM.CORS.tsv	Correlation_result	Level_4	tsv	gdac.broadinstitute.org_GBM.Correlate_CopyNumber_vs_miR.Level_4.2012052500.0.0	yes
getCNExpCorrelation1.mrnaexp	GBM.mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_GBM.Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00289:50	Correlate_CopyNumber_vs_miR_2012052500	STATS.QA.tsv	Correlation_result	Level_4	tsv	gdac.broadinstitute.org_GBM.Correlate_CopyNumber_vs_miR.Level_4.2012052500.0.0	yes
getCNExpCorrelation1.mrnaexp	GBM.mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_GBM.Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00289:50	Correlate_CopyNumber_vs_miR_2012052500	OUTPUT.CORS.png	Correlation-CopyNumber_Expression_miRNA	Level_4	png	gdac.broadinstitute.org_GBM.Correlate_CopyNumber_vs_miR.Level_4.2012052500.0.0	yes
getCNExpCorrelation1.mrnaexp	GBM.mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_GBM.Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00289:50	Correlate_CopyNumber_vs_miR_2012052500	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_GBM.Correlate_CopyNumber_vs_miR.Level_4.2012052500.0.0	yes
getCNExpCorrelation1.mrnaexp	GBM.mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_GBM.Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.2012052500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00289:50	Correlate_CopyNumber_vs_miR_2012052500	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_GBM.Correlate_CopyNumber_vs_miR.Level_4.2012052500.0.0	yes
