Analysis Overview for 25 May 2012
Maintained by TCGA GDAC Team (Broad Institute/Dana-Farber Cancer Institute/Harvard Medical School)

This is the analysis overview for Firehose run "25 May 2012".


Note: These results are offered to the community as an additional reference point, enabling a wide range of cancer biologists, clinical investigators, and genome and computational scientists to easily incorporate TCGA into the backdrop of ongoing research. While every effort is made to ensure that Firehose input data and algorithms are of the highest possible quality, these analyses have not been reviewed by domain experts.

A total of 227 reports are available for analysis run "25 May 2012". No reports were found for the following cancer types: Lymphoid Neoplasm Diffuse Large B-cell Lymphoma, Lymphoid Neoplasm Non-Hodgkins Lymphoma, Sarcoma

Cancer Types

Table 1.  Click "Browse" to view reports for a cancer type of interest. If you prefer to view reports on your own computer you may download a ZIP archive containing all reports for a cancer type by clicking "Download".

Cancer Type Abbreviation Reports HTML ZIP
Bladder Urothelial Carinoma BLCA 9 Browse Download
Breast Invasive Carcinoma BRCA 20 Browse Download
Cervical Squamous Cell Carcinoma CESC 1 Browse Download
Colon/Rectal Adenocarcinoma COADREAD 20 Browse Download
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma DLBC 0 NA NA
Glioblastoma Multiforme GBM 20 Browse Download
Head and Neck Squamous Cell Carcinoma HNSC 7 Browse Download
Kidney Renal Clear Cell Carcinoma KIRC 20 Browse Download
Kidney Renal Papillary Cell Carcinoma KIRP 11 Browse Download
Acute Myeloid Leukemia LAML 6 Browse Download
Brain Lower Grade Glioma LGG 10 Browse Download
Liver Hepatocellular Carcinoma LIHC 4 Browse Download
Lymphoid Neoplasm Non-Hodgkins Lymphoma LNNH 0 NA NA
Lung Adenocarcinoma LUAD 15 Browse Download
Lung Squamous Cell Carcinoma LUSC 18 Browse Download
Ovarian Serous Cystadenocarcinoma OV 22 Browse Download
Pancreatic Adenocarcinoma PAAD 1 Browse Download
Prostate Adenocarcinoma PRAD 4 Browse Download
Sarcoma SARC 0 NA NA
Skin Cutaneous Melanoma SKCM 1 Browse Download
Stomach Adenocarcinoma STAD 10 Browse Download
Thyroid Adenocarcinoma THCA 4 Browse Download
Uterine Corpus Endometrioid Carcinoma UCEC 20 Browse Download

An archive containing all reports for the 25 May 2012 run is available for download. Links to archives with reports for individual cancer types are included in Table 1.

Methods & Data
  • Firehose Directory = /local/cga-fh/tcga-gdac

  • Run Prefix = analyses__2012_05_25

  • Summary Report Date = Sat Jun 16 13:26:08 2012

  • Protection = FALSE