Broad GDAC Analyses Status
analyses__2012_06_23__hnsc_00 Run for Tumor Type: HNSC
Tumor
BCR
Clinical
CN
LowP
Methylation
mRNA
mRNAseq
miR
miRseq
RPPA
MAF
HNSC
312
293
288
0
292
0
263
0
259
0
0
Note that the links below require Broad internal Firehose login credentials.
Pipeline
NotRunnable
Runnable
InProcess
Successful
Unsuccessful
1
Aggregate_Clusters
0
0
0
1
0
2
CopyNumber_GeneBySample
0
0
0
1
0
3
CopyNumber_Gistic2
0
0
0
1
0
4
Correlate_Clinical_vs_miR
1
0
0
0
0
5
Correlate_Clinical_vs_Molecular_Signatures
0
0
0
1
0
6
Correlate_Clinical_vs_mRNA
1
0
0
0
0
7
Correlate_Clinical_vs_Mutation
1
0
0
0
0
8
Correlate_CopyNumber_vs_miR
1
0
0
0
0
9
Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
10
Correlate_CopyNumber_vs_mRNAseq
0
0
0
1
0
11
Correlate_Methylation_vs_mRNA
1
0
0
0
0
12
Methylation_Clustering_CNMF
0
0
0
1
0
13
Methylation_Preprocess
0
0
0
1
0
14
miRseq_Clustering_CNMF
0
0
0
1
0
15
miRseq_Clustering_Consensus
0
0
0
1
0
16
miRseq_Preprocess
0
0
0
1
0
17
miR_Clustering_CNMF
1
0
0
0
0
18
miR_Clustering_Consensus
1
0
0
0
0
19
miR_FindDirectTargets
1
0
0
0
0
20
miR_Preprocess
1
0
0
0
0
21
mRNAseq_Clustering_CNMF
0
0
0
1
0
22
mRNAseq_Clustering_Consensus
0
0
0
1
0
23
mRNAseq_Preprocess
0
0
0
1
0
24
mRNA_Clustering_CNMF
1
0
0
0
0
25
mRNA_Clustering_Consensus
1
0
0
0
0
26
mRNA_Preprocess_Median
1
0
0
0
0
27
Mutation_Assessor
1
0
0
0
0
28
Mutation_Significance
1
0
0
0
0
29
Pathway_FindEnrichedGenes
1
0
0
0
0
30
Pathway_Paradigm_Expression
1
0
0
0
0
31
Pathway_Paradigm_Expression_CopyNumber
1
0
0
0
0
32
RPPA_Clustering_CNMF
1
0
0
0
0
33
RPPA_Clustering_Consensus
1
0
0
0
0
Total
20
0
0
13
0
This table generated on Thu Aug 2 10:22:44 2012