Broad GDAC analyses__2012_06_23__pancancer

Tumor	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNAseq	miR	miRseq	RPPA	MAF
PANCANCER	6686	5578	5386	76	5325	2218	3154	1055	3781	2087	2860

Note that the links below require Broad internal Firehose login credentials.

	Pipeline	NotRunnable	Runnable	Successful	Unsuccessful
1	Aggregate_Clusters	0	1	0	0
2	CopyNumber_GeneBySample	0	0	0	1
3	CopyNumber_Gistic2	0	0	1	0
4	Correlate_Clinical_vs_miR	0	0	1	0
5	Correlate_Clinical_vs_Molecular_Signatures	1	0	0	0
6	Correlate_Clinical_vs_mRNA	0	0	1	0
7	Correlate_Clinical_vs_Mutation	1	0	0	0
8	Correlate_CopyNumber_vs_miR	1	0	0	0
9	Correlate_CopyNumber_vs_mRNA	1	0	0	0
10	Correlate_CopyNumber_vs_mRNAseq	1	0	0	0
11	Correlate_Methylation_vs_mRNA	0	0	0	1
12	Methylation_Clustering_CNMF	1	0	0	0
13	Methylation_Preprocess	0	0	0	1
14	miRseq_Clustering_CNMF	1	0	0	0
15	miRseq_Clustering_Consensus	1	0	0	0
16	miRseq_Preprocess	1	0	0	0
17	miR_Clustering_CNMF	0	0	1	0
18	miR_Clustering_Consensus	0	0	1	0
19	miR_FindDirectTargets	0	0	1	0
20	miR_Preprocess	0	0	1	0
21	mRNAseq_Clustering_CNMF	1	0	0	0
22	mRNAseq_Clustering_Consensus	1	0	0	0
23	mRNAseq_Preprocess	0	0	0	1
24	mRNA_Clustering_CNMF	0	0	0	1
25	mRNA_Clustering_Consensus	0	0	0	1
26	mRNA_Preprocess_Median	0	0	1	0
27	Mutation_Assessor	1	0	0	0
28	Mutation_Significance	0	0	0	1
29	Pathway_FindEnrichedGenes	1	0	0	0
30	Pathway_Paradigm_Expression	0	0	0	1
31	Pathway_Paradigm_Expression_CopyNumber	1	0	0	0
32	RPPA_Clustering_CNMF	1	0	0	0
33	RPPA_Clustering_Consensus	1	0	0	0
	Total	16	1	8	8

This table generated on Thu Aug 2 10:22:46 2012