
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.32.3479/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.32.3479/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/133215/COADREAD.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/COADREAD/1445477/1.GDAC_clinicalDataPicker.Finished/COADREAD.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=591, in cluster file=224, common to both=224
[1] "Reduce the number of clustering variables from 449 to 430."
[1] 430 224
[1] "APC MUTATION ANALYSIS"
[1] 3
  APC MUTATED APC WILD-TYPE 
          160            64 
  APC MUTATED APC WILD-TYPE 
          160            64 
[1] "FBXW7 MUTATION ANALYSIS"
[1] 3
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             38             186 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             38             186 
[1] "NRAS MUTATION ANALYSIS"
[1] 3
  NRAS MUTATED NRAS WILD-TYPE 
            20            204 
  NRAS MUTATED NRAS WILD-TYPE 
            20            204 
[1] "SMAD4 MUTATION ANALYSIS"
[1] 3
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             26             198 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             26             198 
[1] "FAM123B MUTATION ANALYSIS"
[1] 3
  FAM123B MUTATED FAM123B WILD-TYPE 
               25               199 
  FAM123B MUTATED FAM123B WILD-TYPE 
               25               199 
[1] "BRAF MUTATION ANALYSIS"
[1] 3
  BRAF MUTATED BRAF WILD-TYPE 
            22            202 
  BRAF MUTATED BRAF WILD-TYPE 
            22            202 
[1] "GGT1 MUTATION ANALYSIS"
[1] 3
  GGT1 MUTATED GGT1 WILD-TYPE 
             3            221 
  GGT1 MUTATED GGT1 WILD-TYPE 
             3            221 
[1] "KRAS MUTATION ANALYSIS"
[1] 3
  KRAS MUTATED KRAS WILD-TYPE 
            96            128 
  KRAS MUTATED KRAS WILD-TYPE 
            96            128 
[1] "OSTN MUTATION ANALYSIS"
[1] 3
  OSTN MUTATED OSTN WILD-TYPE 
             3            221 
  OSTN MUTATED OSTN WILD-TYPE 
             3            221 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              33              191 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              33              191 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
           120            104 
  TP53 MUTATED TP53 WILD-TYPE 
           120            104 
[1] "SMAD2 MUTATION ANALYSIS"
[1] 3
  SMAD2 MUTATED SMAD2 WILD-TYPE 
             15             209 
  SMAD2 MUTATED SMAD2 WILD-TYPE 
             15             209 
[1] "LRP1B MUTATION ANALYSIS"
[1] 3
  LRP1B MUTATED LRP1B WILD-TYPE 
             39             185 
  LRP1B MUTATED LRP1B WILD-TYPE 
             39             185 
[1] "TCF7L2 MUTATION ANALYSIS"
[1] 3
  TCF7L2 MUTATED TCF7L2 WILD-TYPE 
              18              206 
  TCF7L2 MUTATED TCF7L2 WILD-TYPE 
              18              206 
[1] "FAT4 MUTATION ANALYSIS"
[1] 3
  FAT4 MUTATED FAT4 WILD-TYPE 
            40            184 
  FAT4 MUTATED FAT4 WILD-TYPE 
            40            184 
[1] "TTN MUTATION ANALYSIS"
[1] 3
  TTN MUTATED TTN WILD-TYPE 
           86           138 
  TTN MUTATED TTN WILD-TYPE 
           86           138 
[1] "DMD MUTATION ANALYSIS"
[1] 3
  DMD MUTATED DMD WILD-TYPE 
           33           191 
  DMD MUTATED DMD WILD-TYPE 
           33           191 
[1] "ACVR1B MUTATION ANALYSIS"
[1] 3
  ACVR1B MUTATED ACVR1B WILD-TYPE 
              14              210 
  ACVR1B MUTATED ACVR1B WILD-TYPE 
              14              210 
[1] "ARID1A MUTATION ANALYSIS"
[1] 3
  ARID1A MUTATED ARID1A WILD-TYPE 
              21              203 
  ARID1A MUTATED ARID1A WILD-TYPE 
              21              203 
[1] "ATM MUTATION ANALYSIS"
[1] 3
  ATM MUTATED ATM WILD-TYPE 
           25           199 
  ATM MUTATED ATM WILD-TYPE 
           25           199 
[1] "WBSCR17 MUTATION ANALYSIS"
[1] 3
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
               19               205 
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
               19               205 
[1] "MAP2K4 MUTATION ANALYSIS"
[1] 3
  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
              11              213 
  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
              11              213 
[1] "PCDH9 MUTATION ANALYSIS"
[1] 3
  PCDH9 MUTATED PCDH9 WILD-TYPE 
             22             202 
  PCDH9 MUTATED PCDH9 WILD-TYPE 
             22             202 
[1] "ZC3H13 MUTATION ANALYSIS"
[1] 3
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
              21              203 
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
              21              203 
[1] "ACVR2A MUTATION ANALYSIS"
[1] 3
  ACVR2A MUTATED ACVR2A WILD-TYPE 
               9              215 
  ACVR2A MUTATED ACVR2A WILD-TYPE 
               9              215 
[1] "TNFRSF10C MUTATION ANALYSIS"
[1] 3
  TNFRSF10C MUTATED TNFRSF10C WILD-TYPE 
                  6                 218 
  TNFRSF10C MUTATED TNFRSF10C WILD-TYPE 
                  6                 218 
[1] "KIAA1804 MUTATION ANALYSIS"
[1] 3
  KIAA1804 MUTATED KIAA1804 WILD-TYPE 
                15                209 
  KIAA1804 MUTATED KIAA1804 WILD-TYPE 
                15                209 
[1] "LIFR MUTATION ANALYSIS"
[1] 3
  LIFR MUTATED LIFR WILD-TYPE 
            18            206 
  LIFR MUTATED LIFR WILD-TYPE 
            18            206 
[1] "KRTAP5-5 MUTATION ANALYSIS"
[1] 3
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
                 4                220 
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
                 4                220 
[1] "SOX9 MUTATION ANALYSIS"
[1] 3
  SOX9 MUTATED SOX9 WILD-TYPE 
            10            214 
  SOX9 MUTATED SOX9 WILD-TYPE 
            10            214 
[1] "ATP10A MUTATION ANALYSIS"
[1] 3
  ATP10A MUTATED ATP10A WILD-TYPE 
              19              205 
  ATP10A MUTATED ATP10A WILD-TYPE 
              19              205 
[1] "TXNDC3 MUTATION ANALYSIS"
[1] 3
  TXNDC3 MUTATED TXNDC3 WILD-TYPE 
              11              213 
  TXNDC3 MUTATED TXNDC3 WILD-TYPE 
              11              213 
[1] "RAB40C MUTATION ANALYSIS"
[1] 3
  RAB40C MUTATED RAB40C WILD-TYPE 
               3              221 
  RAB40C MUTATED RAB40C WILD-TYPE 
               3              221 
[1] "PCBP1 MUTATION ANALYSIS"
[1] 3
  PCBP1 MUTATED PCBP1 WILD-TYPE 
              6             218 
  PCBP1 MUTATED PCBP1 WILD-TYPE 
              6             218 
[1] "ELF3 MUTATION ANALYSIS"
[1] 3
  ELF3 MUTATED ELF3 WILD-TYPE 
             7            217 
  ELF3 MUTATED ELF3 WILD-TYPE 
             7            217 
[1] "NALCN MUTATION ANALYSIS"
[1] 3
  NALCN MUTATED NALCN WILD-TYPE 
             20             204 
  NALCN MUTATED NALCN WILD-TYPE 
             20             204 
[1] "CPXCR1 MUTATION ANALYSIS"
[1] 3
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               9              215 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               9              215 
[1] "DNAH5 MUTATION ANALYSIS"
[1] 3
  DNAH5 MUTATED DNAH5 WILD-TYPE 
             34             190 
  DNAH5 MUTATED DNAH5 WILD-TYPE 
             34             190 
[1] "ACOT4 MUTATION ANALYSIS"
[1] 3
  ACOT4 MUTATED ACOT4 WILD-TYPE 
              3             221 
  ACOT4 MUTATED ACOT4 WILD-TYPE 
              3             221 
[1] "CSMD3 MUTATION ANALYSIS"
[1] 3
  CSMD3 MUTATED CSMD3 WILD-TYPE 
             28             196 
  CSMD3 MUTATED CSMD3 WILD-TYPE 
             28             196 
[1] "ANK2 MUTATION ANALYSIS"
[1] 3
  ANK2 MUTATED ANK2 WILD-TYPE 
            31            193 
  ANK2 MUTATED ANK2 WILD-TYPE 
            31            193 
[1] "KLHL4 MUTATION ANALYSIS"
[1] 3
  KLHL4 MUTATED KLHL4 WILD-TYPE 
             16             208 
  KLHL4 MUTATED KLHL4 WILD-TYPE 
             16             208 
[1] "SLITRK1 MUTATION ANALYSIS"
[1] 3
  SLITRK1 MUTATED SLITRK1 WILD-TYPE 
               15               209 
  SLITRK1 MUTATED SLITRK1 WILD-TYPE 
               15               209 
[1] "NRXN1 MUTATION ANALYSIS"
[1] 3
  NRXN1 MUTATED NRXN1 WILD-TYPE 
             20             204 
  NRXN1 MUTATED NRXN1 WILD-TYPE 
             20             204 
[1] "CNTN6 MUTATION ANALYSIS"
[1] 3
  CNTN6 MUTATED CNTN6 WILD-TYPE 
             17             207 
  CNTN6 MUTATED CNTN6 WILD-TYPE 
             17             207 
[1] "OR6N1 MUTATION ANALYSIS"
[1] 3
  OR6N1 MUTATED OR6N1 WILD-TYPE 
             10             214 
  OR6N1 MUTATED OR6N1 WILD-TYPE 
             10             214 
[1] "BAI3 MUTATION ANALYSIS"
[1] 3
  BAI3 MUTATED BAI3 WILD-TYPE 
            18            206 
  BAI3 MUTATED BAI3 WILD-TYPE 
            18            206 
[1] "OR2M4 MUTATION ANALYSIS"
[1] 3
  OR2M4 MUTATED OR2M4 WILD-TYPE 
              8             216 
  OR2M4 MUTATED OR2M4 WILD-TYPE 
              8             216 
[1] "PRDM9 MUTATION ANALYSIS"
[1] 3
  PRDM9 MUTATED PRDM9 WILD-TYPE 
             16             208 
  PRDM9 MUTATED PRDM9 WILD-TYPE 
             16             208 
[1] "CCDC160 MUTATION ANALYSIS"
[1] 3
  CCDC160 MUTATED CCDC160 WILD-TYPE 
                7               217 
  CCDC160 MUTATED CCDC160 WILD-TYPE 
                7               217 
[1] "CHRDL1 MUTATION ANALYSIS"
[1] 3
  CHRDL1 MUTATED CHRDL1 WILD-TYPE 
              11              213 
  CHRDL1 MUTATED CHRDL1 WILD-TYPE 
              11              213 
[1] "PRIM2 MUTATION ANALYSIS"
[1] 3
  PRIM2 MUTATED PRIM2 WILD-TYPE 
              8             216 
  PRIM2 MUTATED PRIM2 WILD-TYPE 
              8             216 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
             7            217 
  PTEN MUTATED PTEN WILD-TYPE 
             7            217 
[1] "SYNE1 MUTATION ANALYSIS"
[1] 3
  SYNE1 MUTATED SYNE1 WILD-TYPE 
             47             177 
  SYNE1 MUTATED SYNE1 WILD-TYPE 
             47             177 
[1] "BTNL8 MUTATION ANALYSIS"
[1] 3
  BTNL8 MUTATED BTNL8 WILD-TYPE 
              3             221 
  BTNL8 MUTATED BTNL8 WILD-TYPE 
              3             221 
[1] "ZNF395 MUTATION ANALYSIS"
[1] 3
  ZNF395 MUTATED ZNF395 WILD-TYPE 
               3              221 
  ZNF395 MUTATED ZNF395 WILD-TYPE 
               3              221 
[1] "RPAP2 MUTATION ANALYSIS"
[1] 3
  RPAP2 MUTATED RPAP2 WILD-TYPE 
              3             221 
  RPAP2 MUTATED RPAP2 WILD-TYPE 
              3             221 
[1] "MGC26647 MUTATION ANALYSIS"
[1] 3
  MGC26647 MUTATED MGC26647 WILD-TYPE 
                 7                217 
  MGC26647 MUTATED MGC26647 WILD-TYPE 
                 7                217 
[1] "ERBB4 MUTATION ANALYSIS"
[1] 3
  ERBB4 MUTATED ERBB4 WILD-TYPE 
             18             206 
  ERBB4 MUTATED ERBB4 WILD-TYPE 
             18             206 
[1] "MGC42105 MUTATION ANALYSIS"
[1] 3
  MGC42105 MUTATED MGC42105 WILD-TYPE 
                11                213 
  MGC42105 MUTATED MGC42105 WILD-TYPE 
                11                213 
[1] "KLK2 MUTATION ANALYSIS"
[1] 3
  KLK2 MUTATED KLK2 WILD-TYPE 
             3            221 
  KLK2 MUTATED KLK2 WILD-TYPE 
             3            221 
[1] "LRRN3 MUTATION ANALYSIS"
[1] 3
  LRRN3 MUTATED LRRN3 WILD-TYPE 
             10             214 
  LRRN3 MUTATED LRRN3 WILD-TYPE 
             10             214 
[1] "EPHA5 MUTATION ANALYSIS"
[1] 3
  EPHA5 MUTATED EPHA5 WILD-TYPE 
             14             210 
  EPHA5 MUTATED EPHA5 WILD-TYPE 
             14             210 
[1] "FLG MUTATION ANALYSIS"
[1] 3
  FLG MUTATED FLG WILD-TYPE 
           32           192 
  FLG MUTATED FLG WILD-TYPE 
           32           192 
[1] "ODZ1 MUTATION ANALYSIS"
[1] 3
  ODZ1 MUTATED ODZ1 WILD-TYPE 
            22            202 
  ODZ1 MUTATED ODZ1 WILD-TYPE 
            22            202 
[1] "DOCK2 MUTATION ANALYSIS"
[1] 3
  DOCK2 MUTATED DOCK2 WILD-TYPE 
             21             203 
  DOCK2 MUTATED DOCK2 WILD-TYPE 
             21             203 
[1] "GUCY1A3 MUTATION ANALYSIS"
[1] 3
  GUCY1A3 MUTATED GUCY1A3 WILD-TYPE 
               12               212 
  GUCY1A3 MUTATED GUCY1A3 WILD-TYPE 
               12               212 
[1] "CDH8 MUTATION ANALYSIS"
[1] 3
  CDH8 MUTATED CDH8 WILD-TYPE 
            14            210 
  CDH8 MUTATED CDH8 WILD-TYPE 
            14            210 
[1] "MYO1B MUTATION ANALYSIS"
[1] 3
  MYO1B MUTATED MYO1B WILD-TYPE 
             13             211 
  MYO1B MUTATED MYO1B WILD-TYPE 
             13             211 
[1] "OPCML MUTATION ANALYSIS"
[1] 3
  OPCML MUTATED OPCML WILD-TYPE 
             10             214 
  OPCML MUTATED OPCML WILD-TYPE 
             10             214 
[1] "DKK2 MUTATION ANALYSIS"
[1] 3
  DKK2 MUTATED DKK2 WILD-TYPE 
             6            218 
  DKK2 MUTATED DKK2 WILD-TYPE 
             6            218 
[1] "GRIK3 MUTATION ANALYSIS"
[1] 3
  GRIK3 MUTATED GRIK3 WILD-TYPE 
             17             207 
  GRIK3 MUTATED GRIK3 WILD-TYPE 
             17             207 
[1] "ARID2 MUTATION ANALYSIS"
[1] 3
  ARID2 MUTATED ARID2 WILD-TYPE 
             15             209 
  ARID2 MUTATED ARID2 WILD-TYPE 
             15             209 
[1] "CDH10 MUTATION ANALYSIS"
[1] 3
  CDH10 MUTATED CDH10 WILD-TYPE 
             14             210 
  CDH10 MUTATED CDH10 WILD-TYPE 
             14             210 
[1] "CNBD1 MUTATION ANALYSIS"
[1] 3
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              7             217 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              7             217 
[1] "LRRIQ3 MUTATION ANALYSIS"
[1] 3
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
              10              214 
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
              10              214 
[1] "TRPC4 MUTATION ANALYSIS"
[1] 3
  TRPC4 MUTATED TRPC4 WILD-TYPE 
             17             207 
  TRPC4 MUTATED TRPC4 WILD-TYPE 
             17             207 
[1] "CDH9 MUTATION ANALYSIS"
[1] 3
  CDH9 MUTATED CDH9 WILD-TYPE 
            15            209 
  CDH9 MUTATED CDH9 WILD-TYPE 
            15            209 
[1] "FAM133A MUTATION ANALYSIS"
[1] 3
  FAM133A MUTATED FAM133A WILD-TYPE 
                7               217 
  FAM133A MUTATED FAM133A WILD-TYPE 
                7               217 
[1] "C16ORF45 MUTATION ANALYSIS"
[1] 3
  C16ORF45 MUTATED C16ORF45 WILD-TYPE 
                 3                221 
  C16ORF45 MUTATED C16ORF45 WILD-TYPE 
                 3                221 
[1] "LPPR4 MUTATION ANALYSIS"
[1] 3
  LPPR4 MUTATED LPPR4 WILD-TYPE 
             13             211 
  LPPR4 MUTATED LPPR4 WILD-TYPE 
             13             211 
[1] "ADAM29 MUTATION ANALYSIS"
[1] 3
  ADAM29 MUTATED ADAM29 WILD-TYPE 
              12              212 
  ADAM29 MUTATED ADAM29 WILD-TYPE 
              12              212 
[1] "CASP8 MUTATION ANALYSIS"
[1] 3
  CASP8 MUTATED CASP8 WILD-TYPE 
             10             214 
  CASP8 MUTATED CASP8 WILD-TYPE 
             10             214 
[1] "CTNNB1 MUTATION ANALYSIS"
[1] 3
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
              11              213 
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
              11              213 
[1] "EDNRB MUTATION ANALYSIS"
[1] 3
  EDNRB MUTATED EDNRB WILD-TYPE 
             11             213 
  EDNRB MUTATED EDNRB WILD-TYPE 
             11             213 
[1] "CRTC1 MUTATION ANALYSIS"
[1] 3
  CRTC1 MUTATED CRTC1 WILD-TYPE 
              6             218 
  CRTC1 MUTATED CRTC1 WILD-TYPE 
              6             218 
[1] "EPHA3 MUTATION ANALYSIS"
[1] 3
  EPHA3 MUTATED EPHA3 WILD-TYPE 
             16             208 
  EPHA3 MUTATED EPHA3 WILD-TYPE 
             16             208 
[1] "GPC6 MUTATION ANALYSIS"
[1] 3
  GPC6 MUTATED GPC6 WILD-TYPE 
            10            214 
  GPC6 MUTATED GPC6 WILD-TYPE 
            10            214 
[1] "TLL1 MUTATION ANALYSIS"
[1] 3
  TLL1 MUTATED TLL1 WILD-TYPE 
            15            209 
  TLL1 MUTATED TLL1 WILD-TYPE 
            15            209 
[1] "CASP14 MUTATION ANALYSIS"
[1] 3
  CASP14 MUTATED CASP14 WILD-TYPE 
               8              216 
  CASP14 MUTATED CASP14 WILD-TYPE 
               8              216 
[1] "PTPRM MUTATION ANALYSIS"
[1] 3
  PTPRM MUTATED PTPRM WILD-TYPE 
             20             204 
  PTPRM MUTATED PTPRM WILD-TYPE 
             20             204 
[1] "CNTN1 MUTATION ANALYSIS"
[1] 3
  CNTN1 MUTATED CNTN1 WILD-TYPE 
             14             210 
  CNTN1 MUTATED CNTN1 WILD-TYPE 
             14             210 
[1] "DCAF4L2 MUTATION ANALYSIS"
[1] 3
  DCAF4L2 MUTATED DCAF4L2 WILD-TYPE 
               11               213 
  DCAF4L2 MUTATED DCAF4L2 WILD-TYPE 
               11               213 
[1] "IL1RAPL2 MUTATION ANALYSIS"
[1] 3
  IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE 
                10                214 
  IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE 
                10                214 
[1] "OR51V1 MUTATION ANALYSIS"
[1] 3
  OR51V1 MUTATED OR51V1 WILD-TYPE 
               9              215 
  OR51V1 MUTATED OR51V1 WILD-TYPE 
               9              215 
[1] "SLC16A7 MUTATION ANALYSIS"
[1] 3
  SLC16A7 MUTATED SLC16A7 WILD-TYPE 
                9               215 
  SLC16A7 MUTATED SLC16A7 WILD-TYPE 
                9               215 
[1] "CCBP2 MUTATION ANALYSIS"
[1] 3
  CCBP2 MUTATED CCBP2 WILD-TYPE 
             10             214 
  CCBP2 MUTATED CCBP2 WILD-TYPE 
             10             214 
[1] "CDH2 MUTATION ANALYSIS"
[1] 3
  CDH2 MUTATED CDH2 WILD-TYPE 
            16            208 
  CDH2 MUTATED CDH2 WILD-TYPE 
            16            208 
[1] "SDK1 MUTATION ANALYSIS"
[1] 3
  SDK1 MUTATED SDK1 WILD-TYPE 
            27            197 
  SDK1 MUTATED SDK1 WILD-TYPE 
            27            197 
[1] "CDH18 MUTATION ANALYSIS"
[1] 3
  CDH18 MUTATED CDH18 WILD-TYPE 
             13             211 
  CDH18 MUTATED CDH18 WILD-TYPE 
             13             211 
[1] "AFF2 MUTATION ANALYSIS"
[1] 3
  AFF2 MUTATED AFF2 WILD-TYPE 
            17            207 
  AFF2 MUTATED AFF2 WILD-TYPE 
            17            207 
[1] "OR2L13 MUTATION ANALYSIS"
[1] 3
  OR2L13 MUTATED OR2L13 WILD-TYPE 
              10              214 
  OR2L13 MUTATED OR2L13 WILD-TYPE 
              10              214 
[1] "CDH12 MUTATION ANALYSIS"
[1] 3
  CDH12 MUTATED CDH12 WILD-TYPE 
             13             211 
  CDH12 MUTATED CDH12 WILD-TYPE 
             13             211 
[1] "MIER3 MUTATION ANALYSIS"
[1] 3
  MIER3 MUTATED MIER3 WILD-TYPE 
             11             213 
  MIER3 MUTATED MIER3 WILD-TYPE 
             11             213 
[1] "LRP2 MUTATION ANALYSIS"
[1] 3
  LRP2 MUTATED LRP2 WILD-TYPE 
            35            189 
  LRP2 MUTATED LRP2 WILD-TYPE 
            35            189 
[1] "FAM22F MUTATION ANALYSIS"
[1] 3
  FAM22F MUTATED FAM22F WILD-TYPE 
              10              214 
  FAM22F MUTATED FAM22F WILD-TYPE 
              10              214 
[1] "GRIA1 MUTATION ANALYSIS"
[1] 3
  GRIA1 MUTATED GRIA1 WILD-TYPE 
             15             209 
  GRIA1 MUTATED GRIA1 WILD-TYPE 
             15             209 
[1] "FAM5C MUTATION ANALYSIS"
[1] 3
  FAM5C MUTATED FAM5C WILD-TYPE 
             13             211 
  FAM5C MUTATED FAM5C WILD-TYPE 
             13             211 
[1] "DPP10 MUTATION ANALYSIS"
[1] 3
  DPP10 MUTATED DPP10 WILD-TYPE 
             13             211 
  DPP10 MUTATED DPP10 WILD-TYPE 
             13             211 
[1] "PRR21 MUTATION ANALYSIS"
[1] 3
  PRR21 MUTATED PRR21 WILD-TYPE 
              3             221 
  PRR21 MUTATED PRR21 WILD-TYPE 
              3             221 
[1] "IFT80 MUTATION ANALYSIS"
[1] 3
  IFT80 MUTATED IFT80 WILD-TYPE 
             10             214 
  IFT80 MUTATED IFT80 WILD-TYPE 
             10             214 
[1] "FREM2 MUTATION ANALYSIS"
[1] 3
  FREM2 MUTATED FREM2 WILD-TYPE 
             23             201 
  FREM2 MUTATED FREM2 WILD-TYPE 
             23             201 
[1] "PIK3R1 MUTATION ANALYSIS"
[1] 3
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
               9              215 
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
               9              215 
[1] "TMEM132D MUTATION ANALYSIS"
[1] 3
  TMEM132D MUTATED TMEM132D WILD-TYPE 
                19                205 
  TMEM132D MUTATED TMEM132D WILD-TYPE 
                19                205 
[1] "COL4A5 MUTATION ANALYSIS"
[1] 3
  COL4A5 MUTATED COL4A5 WILD-TYPE 
              15              209 
  COL4A5 MUTATED COL4A5 WILD-TYPE 
              15              209 
[1] "CHD4 MUTATION ANALYSIS"
[1] 3
  CHD4 MUTATED CHD4 WILD-TYPE 
            17            207 
  CHD4 MUTATED CHD4 WILD-TYPE 
            17            207 
[1] "PKHD1 MUTATION ANALYSIS"
[1] 3
  PKHD1 MUTATED PKHD1 WILD-TYPE 
             26             198 
  PKHD1 MUTATED PKHD1 WILD-TYPE 
             26             198 
[1] "EVC2 MUTATION ANALYSIS"
[1] 3
  EVC2 MUTATED EVC2 WILD-TYPE 
            17            207 
  EVC2 MUTATED EVC2 WILD-TYPE 
            17            207 
[1] "HMCN1 MUTATION ANALYSIS"
[1] 3
  HMCN1 MUTATED HMCN1 WILD-TYPE 
             30             194 
  HMCN1 MUTATED HMCN1 WILD-TYPE 
             30             194 
[1] "DKK4 MUTATION ANALYSIS"
[1] 3
  DKK4 MUTATED DKK4 WILD-TYPE 
             7            217 
  DKK4 MUTATED DKK4 WILD-TYPE 
             7            217 
[1] "SFMBT2 MUTATION ANALYSIS"
[1] 3
  SFMBT2 MUTATED SFMBT2 WILD-TYPE 
              14              210 
  SFMBT2 MUTATED SFMBT2 WILD-TYPE 
              14              210 
[1] "LUZP2 MUTATION ANALYSIS"
[1] 3
  LUZP2 MUTATED LUZP2 WILD-TYPE 
              6             218 
  LUZP2 MUTATED LUZP2 WILD-TYPE 
              6             218 
[1] "UNC13C MUTATION ANALYSIS"
[1] 3
  UNC13C MUTATED UNC13C WILD-TYPE 
              17              207 
  UNC13C MUTATED UNC13C WILD-TYPE 
              17              207 
[1] "UBE2NL MUTATION ANALYSIS"
[1] 3
  UBE2NL MUTATED UBE2NL WILD-TYPE 
               7              217 
  UBE2NL MUTATED UBE2NL WILD-TYPE 
               7              217 
[1] "MCF2 MUTATION ANALYSIS"
[1] 3
  MCF2 MUTATED MCF2 WILD-TYPE 
            12            212 
  MCF2 MUTATED MCF2 WILD-TYPE 
            12            212 
[1] "FAT2 MUTATION ANALYSIS"
[1] 3
  FAT2 MUTATED FAT2 WILD-TYPE 
            29            195 
  FAT2 MUTATED FAT2 WILD-TYPE 
            29            195 
[1] "BCHE MUTATION ANALYSIS"
[1] 3
  BCHE MUTATED BCHE WILD-TYPE 
             9            215 
  BCHE MUTATED BCHE WILD-TYPE 
             9            215 
[1] "KIAA1486 MUTATION ANALYSIS"
[1] 3
  KIAA1486 MUTATED KIAA1486 WILD-TYPE 
                13                211 
  KIAA1486 MUTATED KIAA1486 WILD-TYPE 
                13                211 
[1] "GRIA4 MUTATION ANALYSIS"
[1] 3
  GRIA4 MUTATED GRIA4 WILD-TYPE 
             12             212 
  GRIA4 MUTATED GRIA4 WILD-TYPE 
             12             212 
[1] "UBQLNL MUTATION ANALYSIS"
[1] 3
  UBQLNL MUTATED UBQLNL WILD-TYPE 
               5              219 
  UBQLNL MUTATED UBQLNL WILD-TYPE 
               5              219 
[1] "GABRG1 MUTATION ANALYSIS"
[1] 3
  GABRG1 MUTATED GABRG1 WILD-TYPE 
               8              216 
  GABRG1 MUTATED GABRG1 WILD-TYPE 
               8              216 
[1] "TUSC3 MUTATION ANALYSIS"
[1] 3
  TUSC3 MUTATED TUSC3 WILD-TYPE 
              7             217 
  TUSC3 MUTATED TUSC3 WILD-TYPE 
              7             217 
[1] "SAT1 MUTATION ANALYSIS"
[1] 3
  SAT1 MUTATED SAT1 WILD-TYPE 
             4            220 
  SAT1 MUTATED SAT1 WILD-TYPE 
             4            220 
[1] "RIMS2 MUTATION ANALYSIS"
[1] 3
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             13             211 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             13             211 
[1] "SCN7A MUTATION ANALYSIS"
[1] 3
  SCN7A MUTATED SCN7A WILD-TYPE 
             15             209 
  SCN7A MUTATED SCN7A WILD-TYPE 
             15             209 
[1] "TPTE MUTATION ANALYSIS"
[1] 3
  TPTE MUTATED TPTE WILD-TYPE 
            12            212 
  TPTE MUTATED TPTE WILD-TYPE 
            12            212 
[1] "ZNF568 MUTATION ANALYSIS"
[1] 3
  ZNF568 MUTATED ZNF568 WILD-TYPE 
              10              214 
  ZNF568 MUTATED ZNF568 WILD-TYPE 
              10              214 
[1] "NRG1 MUTATION ANALYSIS"
[1] 3
  NRG1 MUTATED NRG1 WILD-TYPE 
            13            211 
  NRG1 MUTATED NRG1 WILD-TYPE 
            13            211 
[1] "KCNH7 MUTATION ANALYSIS"
[1] 3
  KCNH7 MUTATED KCNH7 WILD-TYPE 
             14             210 
  KCNH7 MUTATED KCNH7 WILD-TYPE 
             14             210 
[1] "P2RY10 MUTATION ANALYSIS"
[1] 3
  P2RY10 MUTATED P2RY10 WILD-TYPE 
               7              217 
  P2RY10 MUTATED P2RY10 WILD-TYPE 
               7              217 
[1] "PCDHA10 MUTATION ANALYSIS"
[1] 3
  PCDHA10 MUTATED PCDHA10 WILD-TYPE 
               10               214 
  PCDHA10 MUTATED PCDHA10 WILD-TYPE 
               10               214 
[1] "EIF4A2 MUTATION ANALYSIS"
[1] 3
  EIF4A2 MUTATED EIF4A2 WILD-TYPE 
               5              219 
  EIF4A2 MUTATED EIF4A2 WILD-TYPE 
               5              219 
[1] "PPP2R2B MUTATION ANALYSIS"
[1] 3
  PPP2R2B MUTATED PPP2R2B WILD-TYPE 
                3               221 
  PPP2R2B MUTATED PPP2R2B WILD-TYPE 
                3               221 
[1] "NRXN3 MUTATION ANALYSIS"
[1] 3
  NRXN3 MUTATED NRXN3 WILD-TYPE 
             17             207 
  NRXN3 MUTATED NRXN3 WILD-TYPE 
             17             207 
[1] "DCHS2 MUTATION ANALYSIS"
[1] 3
  DCHS2 MUTATED DCHS2 WILD-TYPE 
             24             200 
  DCHS2 MUTATED DCHS2 WILD-TYPE 
             24             200 
[1] "GABRA5 MUTATION ANALYSIS"
[1] 3
  GABRA5 MUTATED GABRA5 WILD-TYPE 
               9              215 
  GABRA5 MUTATED GABRA5 WILD-TYPE 
               9              215 
[1] "TGFBR2 MUTATION ANALYSIS"
[1] 3
  TGFBR2 MUTATED TGFBR2 WILD-TYPE 
               7              217 
  TGFBR2 MUTATED TGFBR2 WILD-TYPE 
               7              217 
[1] "OR8B4 MUTATION ANALYSIS"
[1] 3
  OR8B4 MUTATED OR8B4 WILD-TYPE 
              6             218 
  OR8B4 MUTATED OR8B4 WILD-TYPE 
              6             218 
[1] "DACH2 MUTATION ANALYSIS"
[1] 3
  DACH2 MUTATED DACH2 WILD-TYPE 
             12             212 
  DACH2 MUTATED DACH2 WILD-TYPE 
             12             212 
[1] "MYO16 MUTATION ANALYSIS"
[1] 3
  MYO16 MUTATED MYO16 WILD-TYPE 
             17             207 
  MYO16 MUTATED MYO16 WILD-TYPE 
             17             207 
[1] "IL18R1 MUTATION ANALYSIS"
[1] 3
  IL18R1 MUTATED IL18R1 WILD-TYPE 
              10              214 
  IL18R1 MUTATED IL18R1 WILD-TYPE 
              10              214 
[1] "ABCA12 MUTATION ANALYSIS"
[1] 3
  ABCA12 MUTATED ABCA12 WILD-TYPE 
              22              202 
  ABCA12 MUTATED ABCA12 WILD-TYPE 
              22              202 
[1] "HTR3B MUTATION ANALYSIS"
[1] 3
  HTR3B MUTATED HTR3B WILD-TYPE 
              6             218 
  HTR3B MUTATED HTR3B WILD-TYPE 
              6             218 
[1] "LASS3 MUTATION ANALYSIS"
[1] 3
  LASS3 MUTATED LASS3 WILD-TYPE 
              9             215 
  LASS3 MUTATED LASS3 WILD-TYPE 
              9             215 
[1] "MAPK10 MUTATION ANALYSIS"
[1] 3
  MAPK10 MUTATED MAPK10 WILD-TYPE 
               8              216 
  MAPK10 MUTATED MAPK10 WILD-TYPE 
               8              216 
[1] "POSTN MUTATION ANALYSIS"
[1] 3
  POSTN MUTATED POSTN WILD-TYPE 
             11             213 
  POSTN MUTATED POSTN WILD-TYPE 
             11             213 
[1] "CHRM2 MUTATION ANALYSIS"
[1] 3
  CHRM2 MUTATED CHRM2 WILD-TYPE 
             10             214 
  CHRM2 MUTATED CHRM2 WILD-TYPE 
             10             214 
[1] "DSEL MUTATION ANALYSIS"
[1] 3
  DSEL MUTATED DSEL WILD-TYPE 
            14            210 
  DSEL MUTATED DSEL WILD-TYPE 
            14            210 
[1] "NCAM2 MUTATION ANALYSIS"
[1] 3
  NCAM2 MUTATED NCAM2 WILD-TYPE 
             12             212 
  NCAM2 MUTATED NCAM2 WILD-TYPE 
             12             212 
[1] "FSTL5 MUTATION ANALYSIS"
[1] 3
  FSTL5 MUTATED FSTL5 WILD-TYPE 
             11             213 
  FSTL5 MUTATED FSTL5 WILD-TYPE 
             11             213 
[1] "TRPS1 MUTATION ANALYSIS"
[1] 3
  TRPS1 MUTATED TRPS1 WILD-TYPE 
             17             207 
  TRPS1 MUTATED TRPS1 WILD-TYPE 
             17             207 
[1] "CACNG3 MUTATION ANALYSIS"
[1] 3
  CACNG3 MUTATED CACNG3 WILD-TYPE 
               8              216 
  CACNG3 MUTATED CACNG3 WILD-TYPE 
               8              216 
[1] "HCN1 MUTATION ANALYSIS"
[1] 3
  HCN1 MUTATED HCN1 WILD-TYPE 
            10            214 
  HCN1 MUTATED HCN1 WILD-TYPE 
            10            214 
[1] "KCNA4 MUTATION ANALYSIS"
[1] 3
  KCNA4 MUTATED KCNA4 WILD-TYPE 
             12             212 
  KCNA4 MUTATED KCNA4 WILD-TYPE 
             12             212 
[1] "ING1 MUTATION ANALYSIS"
[1] 3
  ING1 MUTATED ING1 WILD-TYPE 
             6            218 
  ING1 MUTATED ING1 WILD-TYPE 
             6            218 
[1] "PSG8 MUTATION ANALYSIS"
[1] 3
  PSG8 MUTATED PSG8 WILD-TYPE 
             8            216 
  PSG8 MUTATED PSG8 WILD-TYPE 
             8            216 
[1] "SPATA17 MUTATION ANALYSIS"
[1] 3
  SPATA17 MUTATED SPATA17 WILD-TYPE 
                9               215 
  SPATA17 MUTATED SPATA17 WILD-TYPE 
                9               215 
[1] "ZIM3 MUTATION ANALYSIS"
[1] 3
  ZIM3 MUTATED ZIM3 WILD-TYPE 
             9            215 
  ZIM3 MUTATED ZIM3 WILD-TYPE 
             9            215 
[1] "ZNF167 MUTATION ANALYSIS"
[1] 3
  ZNF167 MUTATED ZNF167 WILD-TYPE 
               7              217 
  ZNF167 MUTATED ZNF167 WILD-TYPE 
               7              217 
[1] "CSMD1 MUTATION ANALYSIS"
[1] 3
  CSMD1 MUTATED CSMD1 WILD-TYPE 
             26             198 
  CSMD1 MUTATED CSMD1 WILD-TYPE 
             26             198 
[1] "ME1 MUTATION ANALYSIS"
[1] 3
  ME1 MUTATED ME1 WILD-TYPE 
            9           215 
  ME1 MUTATED ME1 WILD-TYPE 
            9           215 
[1] "HCLS1 MUTATION ANALYSIS"
[1] 3
  HCLS1 MUTATED HCLS1 WILD-TYPE 
              8             216 
  HCLS1 MUTATED HCLS1 WILD-TYPE 
              8             216 
[1] "B2M MUTATION ANALYSIS"
[1] 3
  B2M MUTATED B2M WILD-TYPE 
            5           219 
  B2M MUTATED B2M WILD-TYPE 
            5           219 
[1] "JAKMIP2 MUTATION ANALYSIS"
[1] 3
  JAKMIP2 MUTATED JAKMIP2 WILD-TYPE 
               13               211 
  JAKMIP2 MUTATED JAKMIP2 WILD-TYPE 
               13               211 
[1] "PCDHB5 MUTATION ANALYSIS"
[1] 3
  PCDHB5 MUTATED PCDHB5 WILD-TYPE 
              14              210 
  PCDHB5 MUTATED PCDHB5 WILD-TYPE 
              14              210 
[1] "RPS6KA6 MUTATION ANALYSIS"
[1] 3
  RPS6KA6 MUTATED RPS6KA6 WILD-TYPE 
                7               217 
  RPS6KA6 MUTATED RPS6KA6 WILD-TYPE 
                7               217 
[1] "GPHN MUTATION ANALYSIS"
[1] 3
  GPHN MUTATED GPHN WILD-TYPE 
            12            212 
  GPHN MUTATED GPHN WILD-TYPE 
            12            212 
[1] "C8B MUTATION ANALYSIS"
[1] 3
  C8B MUTATED C8B WILD-TYPE 
           10           214 
  C8B MUTATED C8B WILD-TYPE 
           10           214 
[1] "OTOL1 MUTATION ANALYSIS"
[1] 3
  OTOL1 MUTATED OTOL1 WILD-TYPE 
              8             216 
  OTOL1 MUTATED OTOL1 WILD-TYPE 
              8             216 
[1] "AMY2A MUTATION ANALYSIS"
[1] 3
  AMY2A MUTATED AMY2A WILD-TYPE 
              5             219 
  AMY2A MUTATED AMY2A WILD-TYPE 
              5             219 
[1] "MAP3K4 MUTATION ANALYSIS"
[1] 3
  MAP3K4 MUTATED MAP3K4 WILD-TYPE 
              17              207 
  MAP3K4 MUTATED MAP3K4 WILD-TYPE 
              17              207 
[1] "CDH11 MUTATION ANALYSIS"
[1] 3
  CDH11 MUTATED CDH11 WILD-TYPE 
             14             210 
  CDH11 MUTATED CDH11 WILD-TYPE 
             14             210 
[1] "FGA MUTATION ANALYSIS"
[1] 3
  FGA MUTATED FGA WILD-TYPE 
           12           212 
  FGA MUTATED FGA WILD-TYPE 
           12           212 
[1] "RIMS1 MUTATION ANALYSIS"
[1] 3
  RIMS1 MUTATED RIMS1 WILD-TYPE 
             15             209 
  RIMS1 MUTATED RIMS1 WILD-TYPE 
             15             209 
[1] "OR7C1 MUTATION ANALYSIS"
[1] 3
  OR7C1 MUTATED OR7C1 WILD-TYPE 
              6             218 
  OR7C1 MUTATED OR7C1 WILD-TYPE 
              6             218 
[1] "PCDH11X MUTATION ANALYSIS"
[1] 3
  PCDH11X MUTATED PCDH11X WILD-TYPE 
               14               210 
  PCDH11X MUTATED PCDH11X WILD-TYPE 
               14               210 
[1] "MAP2 MUTATION ANALYSIS"
[1] 3
  MAP2 MUTATED MAP2 WILD-TYPE 
            16            208 
  MAP2 MUTATED MAP2 WILD-TYPE 
            16            208 
[1] "COL6A3 MUTATION ANALYSIS"
[1] 3
  COL6A3 MUTATED COL6A3 WILD-TYPE 
              27              197 
  COL6A3 MUTATED COL6A3 WILD-TYPE 
              27              197 
[1] "TRPA1 MUTATION ANALYSIS"
[1] 3
  TRPA1 MUTATED TRPA1 WILD-TYPE 
             12             212 
  TRPA1 MUTATED TRPA1 WILD-TYPE 
             12             212 
[1] "PCDH15 MUTATION ANALYSIS"
[1] 3
  PCDH15 MUTATED PCDH15 WILD-TYPE 
              20              204 
  PCDH15 MUTATED PCDH15 WILD-TYPE 
              20              204 
[1] "RWDD2B MUTATION ANALYSIS"
[1] 3
  RWDD2B MUTATED RWDD2B WILD-TYPE 
               8              216 
  RWDD2B MUTATED RWDD2B WILD-TYPE 
               8              216 
[1] "TMTC1 MUTATION ANALYSIS"
[1] 3
  TMTC1 MUTATED TMTC1 WILD-TYPE 
             13             211 
  TMTC1 MUTATED TMTC1 WILD-TYPE 
             13             211 
[1] "SH3GL3 MUTATION ANALYSIS"
[1] 3
  SH3GL3 MUTATED SH3GL3 WILD-TYPE 
               8              216 
  SH3GL3 MUTATED SH3GL3 WILD-TYPE 
               8              216 
[1] "RARB MUTATION ANALYSIS"
[1] 3
  RARB MUTATED RARB WILD-TYPE 
             8            216 
  RARB MUTATED RARB WILD-TYPE 
             8            216 
[1] "CACNG7 MUTATION ANALYSIS"
[1] 3
  CACNG7 MUTATED CACNG7 WILD-TYPE 
               6              218 
  CACNG7 MUTATED CACNG7 WILD-TYPE 
               6              218 
[1] "GRIN2A MUTATION ANALYSIS"
[1] 3
  GRIN2A MUTATED GRIN2A WILD-TYPE 
              19              205 
  GRIN2A MUTATED GRIN2A WILD-TYPE 
              19              205 
[1] "SPAG17 MUTATION ANALYSIS"
[1] 3
  SPAG17 MUTATED SPAG17 WILD-TYPE 
              17              207 
  SPAG17 MUTATED SPAG17 WILD-TYPE 
              17              207 
[1] "FLRT2 MUTATION ANALYSIS"
[1] 3
  FLRT2 MUTATED FLRT2 WILD-TYPE 
             13             211 
  FLRT2 MUTATED FLRT2 WILD-TYPE 
             13             211 
[1] "KCNQ3 MUTATION ANALYSIS"
[1] 3
  KCNQ3 MUTATED KCNQ3 WILD-TYPE 
             13             211 
  KCNQ3 MUTATED KCNQ3 WILD-TYPE 
             13             211 
[1] "LRRIQ1 MUTATION ANALYSIS"
[1] 3
  LRRIQ1 MUTATED LRRIQ1 WILD-TYPE 
              14              210 
  LRRIQ1 MUTATED LRRIQ1 WILD-TYPE 
              14              210 
[1] "PCDH10 MUTATION ANALYSIS"
[1] 3
  PCDH10 MUTATED PCDH10 WILD-TYPE 
              17              207 
  PCDH10 MUTATED PCDH10 WILD-TYPE 
              17              207 
[1] "ZCWPW2 MUTATION ANALYSIS"
[1] 3
  ZCWPW2 MUTATED ZCWPW2 WILD-TYPE 
               7              217 
  ZCWPW2 MUTATED ZCWPW2 WILD-TYPE 
               7              217 
[1] "CNTNAP4 MUTATION ANALYSIS"
[1] 3
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
               12               212 
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
               12               212 
[1] "HMGN5 MUTATION ANALYSIS"
[1] 3
  HMGN5 MUTATED HMGN5 WILD-TYPE 
              3             221 
  HMGN5 MUTATED HMGN5 WILD-TYPE 
              3             221 
[1] "MAGEC2 MUTATION ANALYSIS"
[1] 3
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
               7              217 
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
               7              217 
[1] "ATP7A MUTATION ANALYSIS"
[1] 3
  ATP7A MUTATED ATP7A WILD-TYPE 
              6             218 
  ATP7A MUTATED ATP7A WILD-TYPE 
              6             218 
[1] "GSK3B MUTATION ANALYSIS"
[1] 3
  GSK3B MUTATED GSK3B WILD-TYPE 
              7             217 
  GSK3B MUTATED GSK3B WILD-TYPE 
              7             217 
[1] "NELL1 MUTATION ANALYSIS"
[1] 3
  NELL1 MUTATED NELL1 WILD-TYPE 
             12             212 
  NELL1 MUTATED NELL1 WILD-TYPE 
             12             212 
[1] "SORCS1 MUTATION ANALYSIS"
[1] 3
  SORCS1 MUTATED SORCS1 WILD-TYPE 
              15              209 
  SORCS1 MUTATED SORCS1 WILD-TYPE 
              15              209 
[1] "SYNC MUTATION ANALYSIS"
[1] 3
  SYNC MUTATED SYNC WILD-TYPE 
             5            219 
  SYNC MUTATED SYNC WILD-TYPE 
             5            219 
[1] "HTR1E MUTATION ANALYSIS"
[1] 3
  HTR1E MUTATED HTR1E WILD-TYPE 
              7             217 
  HTR1E MUTATED HTR1E WILD-TYPE 
              7             217 
[1] "ISL1 MUTATION ANALYSIS"
[1] 3
  ISL1 MUTATED ISL1 WILD-TYPE 
             8            216 
  ISL1 MUTATED ISL1 WILD-TYPE 
             8            216 
[1] "ROBO1 MUTATION ANALYSIS"
[1] 3
  ROBO1 MUTATED ROBO1 WILD-TYPE 
             19             205 
  ROBO1 MUTATED ROBO1 WILD-TYPE 
             19             205 
[1] "LRTM1 MUTATION ANALYSIS"
[1] 3
  LRTM1 MUTATED LRTM1 WILD-TYPE 
              7             217 
  LRTM1 MUTATED LRTM1 WILD-TYPE 
              7             217 
[1] "LEPREL1 MUTATION ANALYSIS"
[1] 3
  LEPREL1 MUTATED LEPREL1 WILD-TYPE 
               10               214 
  LEPREL1 MUTATED LEPREL1 WILD-TYPE 
               10               214 
[1] "INHBA MUTATION ANALYSIS"
[1] 3
  INHBA MUTATED INHBA WILD-TYPE 
              9             215 
  INHBA MUTATED INHBA WILD-TYPE 
              9             215 
[1] "DLC1 MUTATION ANALYSIS"
[1] 3
  DLC1 MUTATED DLC1 WILD-TYPE 
            20            204 
  DLC1 MUTATED DLC1 WILD-TYPE 
            20            204 
[1] "ZEB2 MUTATION ANALYSIS"
[1] 3
  ZEB2 MUTATED ZEB2 WILD-TYPE 
            15            209 
  ZEB2 MUTATED ZEB2 WILD-TYPE 
            15            209 
[1] "OLFM3 MUTATION ANALYSIS"
[1] 3
  OLFM3 MUTATED OLFM3 WILD-TYPE 
              7             217 
  OLFM3 MUTATED OLFM3 WILD-TYPE 
              7             217 
[1] "ZEB1 MUTATION ANALYSIS"
[1] 3
  ZEB1 MUTATED ZEB1 WILD-TYPE 
            11            213 
  ZEB1 MUTATED ZEB1 WILD-TYPE 
            11            213 
[1] "LOXL2 MUTATION ANALYSIS"
[1] 3
  LOXL2 MUTATED LOXL2 WILD-TYPE 
              9             215 
  LOXL2 MUTATED LOXL2 WILD-TYPE 
              9             215 
[1] "PAPPA MUTATION ANALYSIS"
[1] 3
  PAPPA MUTATED PAPPA WILD-TYPE 
             17             207 
  PAPPA MUTATED PAPPA WILD-TYPE 
             17             207 
[1] "TNR MUTATION ANALYSIS"
[1] 3
  TNR MUTATED TNR WILD-TYPE 
           17           207 
  TNR MUTATED TNR WILD-TYPE 
           17           207 
[1] "FZD3 MUTATION ANALYSIS"
[1] 3
  FZD3 MUTATED FZD3 WILD-TYPE 
            10            214 
  FZD3 MUTATED FZD3 WILD-TYPE 
            10            214 
[1] "TMPRSS13 MUTATION ANALYSIS"
[1] 3
  TMPRSS13 MUTATED TMPRSS13 WILD-TYPE 
                 4                220 
  TMPRSS13 MUTATED TMPRSS13 WILD-TYPE 
                 4                220 
[1] "ACSS3 MUTATION ANALYSIS"
[1] 3
  ACSS3 MUTATED ACSS3 WILD-TYPE 
              8             216 
  ACSS3 MUTATED ACSS3 WILD-TYPE 
              8             216 
[1] "ZNF804B MUTATION ANALYSIS"
[1] 3
  ZNF804B MUTATED ZNF804B WILD-TYPE 
               12               212 
  ZNF804B MUTATED ZNF804B WILD-TYPE 
               12               212 
[1] "DPYD MUTATION ANALYSIS"
[1] 3
  DPYD MUTATED DPYD WILD-TYPE 
            12            212 
  DPYD MUTATED DPYD WILD-TYPE 
            12            212 
[1] "OLFML1 MUTATION ANALYSIS"
[1] 3
  OLFML1 MUTATED OLFML1 WILD-TYPE 
               7              217 
  OLFML1 MUTATED OLFML1 WILD-TYPE 
               7              217 
[1] "PDZRN4 MUTATION ANALYSIS"
[1] 3
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
              13              211 
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
              13              211 
[1] "FAM116A MUTATION ANALYSIS"
[1] 3
  FAM116A MUTATED FAM116A WILD-TYPE 
                6               218 
  FAM116A MUTATED FAM116A WILD-TYPE 
                6               218 
[1] "RBMS3 MUTATION ANALYSIS"
[1] 3
  RBMS3 MUTATED RBMS3 WILD-TYPE 
              6             218 
  RBMS3 MUTATED RBMS3 WILD-TYPE 
              6             218 
[1] "SOHLH2 MUTATION ANALYSIS"
[1] 3
  SOHLH2 MUTATED SOHLH2 WILD-TYPE 
               9              215 
  SOHLH2 MUTATED SOHLH2 WILD-TYPE 
               9              215 
[1] "F13A1 MUTATION ANALYSIS"
[1] 3
  F13A1 MUTATED F13A1 WILD-TYPE 
             10             214 
  F13A1 MUTATED F13A1 WILD-TYPE 
             10             214 
[1] "ZNF593 MUTATION ANALYSIS"
[1] 3
  ZNF593 MUTATED ZNF593 WILD-TYPE 
               4              220 
  ZNF593 MUTATED ZNF593 WILD-TYPE 
               4              220 
[1] "TRIM55 MUTATION ANALYSIS"
[1] 3
  TRIM55 MUTATED TRIM55 WILD-TYPE 
               9              215 
  TRIM55 MUTATED TRIM55 WILD-TYPE 
               9              215 
[1] "RELN MUTATION ANALYSIS"
[1] 3
  RELN MUTATED RELN WILD-TYPE 
            21            203 
  RELN MUTATED RELN WILD-TYPE 
            21            203 
[1] "PWP1 MUTATION ANALYSIS"
[1] 3
  PWP1 MUTATED PWP1 WILD-TYPE 
             8            216 
  PWP1 MUTATED PWP1 WILD-TYPE 
             8            216 
[1] "SLAMF8 MUTATION ANALYSIS"
[1] 3
  SLAMF8 MUTATED SLAMF8 WILD-TYPE 
               3              221 
  SLAMF8 MUTATED SLAMF8 WILD-TYPE 
               3              221 
[1] "ARHGAP28 MUTATION ANALYSIS"
[1] 3
  ARHGAP28 MUTATED ARHGAP28 WILD-TYPE 
                 7                217 
  ARHGAP28 MUTATED ARHGAP28 WILD-TYPE 
                 7                217 
[1] "SESN3 MUTATION ANALYSIS"
[1] 3
  SESN3 MUTATED SESN3 WILD-TYPE 
              5             219 
  SESN3 MUTATED SESN3 WILD-TYPE 
              5             219 
[1] "RNASE11 MUTATION ANALYSIS"
[1] 3
  RNASE11 MUTATED RNASE11 WILD-TYPE 
                5               219 
  RNASE11 MUTATED RNASE11 WILD-TYPE 
                5               219 
[1] "ZNF208 MUTATION ANALYSIS"
[1] 3
  ZNF208 MUTATED ZNF208 WILD-TYPE 
              11              213 
  ZNF208 MUTATED ZNF208 WILD-TYPE 
              11              213 
[1] "ARHGAP15 MUTATION ANALYSIS"
[1] 3
  ARHGAP15 MUTATED ARHGAP15 WILD-TYPE 
                 7                217 
  ARHGAP15 MUTATED ARHGAP15 WILD-TYPE 
                 7                217 
[1] "DPF2 MUTATION ANALYSIS"
[1] 3
  DPF2 MUTATED DPF2 WILD-TYPE 
             4            220 
  DPF2 MUTATED DPF2 WILD-TYPE 
             4            220 
[1] "PRKD1 MUTATION ANALYSIS"
[1] 3
  PRKD1 MUTATED PRKD1 WILD-TYPE 
             12             212 
  PRKD1 MUTATED PRKD1 WILD-TYPE 
             12             212 
[1] "NAALAD2 MUTATION ANALYSIS"
[1] 3
  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
               11               213 
  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
               11               213 
[1] "AGPAT4 MUTATION ANALYSIS"
[1] 3
  AGPAT4 MUTATED AGPAT4 WILD-TYPE 
               7              217 
  AGPAT4 MUTATED AGPAT4 WILD-TYPE 
               7              217 
[1] "STON1-GTF2A1L MUTATION ANALYSIS"
[1] 3
  STON1-GTF2A1L MUTATED STON1-GTF2A1L WILD-TYPE 
                     12                     212 
  STON1-GTF2A1L MUTATED STON1-GTF2A1L WILD-TYPE 
                     12                     212 
[1] "ZFHX4 MUTATION ANALYSIS"
[1] 3
  ZFHX4 MUTATED ZFHX4 WILD-TYPE 
             24             200 
  ZFHX4 MUTATED ZFHX4 WILD-TYPE 
             24             200 
[1] "C15ORF2 MUTATION ANALYSIS"
[1] 3
  C15ORF2 MUTATED C15ORF2 WILD-TYPE 
               12               212 
  C15ORF2 MUTATED C15ORF2 WILD-TYPE 
               12               212 
[1] "ZNF677 MUTATION ANALYSIS"
[1] 3
  ZNF677 MUTATED ZNF677 WILD-TYPE 
               9              215 
  ZNF677 MUTATED ZNF677 WILD-TYPE 
               9              215 
[1] "ANO4 MUTATION ANALYSIS"
[1] 3
  ANO4 MUTATED ANO4 WILD-TYPE 
            11            213 
  ANO4 MUTATED ANO4 WILD-TYPE 
            11            213 
[1] "ESR1 MUTATION ANALYSIS"
[1] 3
  ESR1 MUTATED ESR1 WILD-TYPE 
            11            213 
  ESR1 MUTATED ESR1 WILD-TYPE 
            11            213 
[1] "ATP6V0D2 MUTATION ANALYSIS"
[1] 3
  ATP6V0D2 MUTATED ATP6V0D2 WILD-TYPE 
                 8                216 
  ATP6V0D2 MUTATED ATP6V0D2 WILD-TYPE 
                 8                216 
[1] "FHOD3 MUTATION ANALYSIS"
[1] 3
  FHOD3 MUTATED FHOD3 WILD-TYPE 
             12             212 
  FHOD3 MUTATED FHOD3 WILD-TYPE 
             12             212 
[1] "SULT1C4 MUTATION ANALYSIS"
[1] 3
  SULT1C4 MUTATED SULT1C4 WILD-TYPE 
                3               221 
  SULT1C4 MUTATED SULT1C4 WILD-TYPE 
                3               221 
[1] "TAF1L MUTATION ANALYSIS"
[1] 3
  TAF1L MUTATED TAF1L WILD-TYPE 
             16             208 
  TAF1L MUTATED TAF1L WILD-TYPE 
             16             208 
[1] "VWA5A MUTATION ANALYSIS"
[1] 3
  VWA5A MUTATED VWA5A WILD-TYPE 
              8             216 
  VWA5A MUTATED VWA5A WILD-TYPE 
              8             216 
[1] "ZNF22 MUTATION ANALYSIS"
[1] 3
  ZNF22 MUTATED ZNF22 WILD-TYPE 
              3             221 
  ZNF22 MUTATED ZNF22 WILD-TYPE 
              3             221 
[1] "ALK MUTATION ANALYSIS"
[1] 3
  ALK MUTATED ALK WILD-TYPE 
           12           212 
  ALK MUTATED ALK WILD-TYPE 
           12           212 
[1] "GPR141 MUTATION ANALYSIS"
[1] 3
  GPR141 MUTATED GPR141 WILD-TYPE 
               3              221 
  GPR141 MUTATED GPR141 WILD-TYPE 
               3              221 
[1] "STAG1 MUTATION ANALYSIS"
[1] 3
  STAG1 MUTATED STAG1 WILD-TYPE 
             12             212 
  STAG1 MUTATED STAG1 WILD-TYPE 
             12             212 
[1] "KIAA2022 MUTATION ANALYSIS"
[1] 3
  KIAA2022 MUTATED KIAA2022 WILD-TYPE 
                15                209 
  KIAA2022 MUTATED KIAA2022 WILD-TYPE 
                15                209 
[1] "GML MUTATION ANALYSIS"
[1] 3
  GML MUTATED GML WILD-TYPE 
            6           218 
  GML MUTATED GML WILD-TYPE 
            6           218 
[1] "SLC26A7 MUTATION ANALYSIS"
[1] 3
  SLC26A7 MUTATED SLC26A7 WILD-TYPE 
                7               217 
  SLC26A7 MUTATED SLC26A7 WILD-TYPE 
                7               217 
[1] "NXF5 MUTATION ANALYSIS"
[1] 3
  NXF5 MUTATED NXF5 WILD-TYPE 
             7            217 
  NXF5 MUTATED NXF5 WILD-TYPE 
             7            217 
[1] "OR2M2 MUTATION ANALYSIS"
[1] 3
  OR2M2 MUTATED OR2M2 WILD-TYPE 
              6             218 
  OR2M2 MUTATED OR2M2 WILD-TYPE 
              6             218 
[1] "SGCZ MUTATION ANALYSIS"
[1] 3
  SGCZ MUTATED SGCZ WILD-TYPE 
             7            217 
  SGCZ MUTATED SGCZ WILD-TYPE 
             7            217 
[1] "C12ORF54 MUTATION ANALYSIS"
[1] 3
  C12ORF54 MUTATED C12ORF54 WILD-TYPE 
                 4                220 
  C12ORF54 MUTATED C12ORF54 WILD-TYPE 
                 4                220 
[1] "NCKAP5 MUTATION ANALYSIS"
[1] 3
  NCKAP5 MUTATED NCKAP5 WILD-TYPE 
              15              209 
  NCKAP5 MUTATED NCKAP5 WILD-TYPE 
              15              209 
[1] "GIGYF2 MUTATION ANALYSIS"
[1] 3
  GIGYF2 MUTATED GIGYF2 WILD-TYPE 
              10              214 
  GIGYF2 MUTATED GIGYF2 WILD-TYPE 
              10              214 
[1] "GRID1 MUTATION ANALYSIS"
[1] 3
  GRID1 MUTATED GRID1 WILD-TYPE 
             11             213 
  GRID1 MUTATED GRID1 WILD-TYPE 
             11             213 
[1] "SFPQ MUTATION ANALYSIS"
[1] 3
  SFPQ MUTATED SFPQ WILD-TYPE 
             7            217 
  SFPQ MUTATED SFPQ WILD-TYPE 
             7            217 
[1] "CYTL1 MUTATION ANALYSIS"
[1] 3
  CYTL1 MUTATED CYTL1 WILD-TYPE 
              4             220 
  CYTL1 MUTATED CYTL1 WILD-TYPE 
              4             220 
[1] "ANGPTL5 MUTATION ANALYSIS"
[1] 3
  ANGPTL5 MUTATED ANGPTL5 WILD-TYPE 
                8               216 
  ANGPTL5 MUTATED ANGPTL5 WILD-TYPE 
                8               216 
[1] "ZFPM2 MUTATION ANALYSIS"
[1] 3
  ZFPM2 MUTATED ZFPM2 WILD-TYPE 
              6             218 
  ZFPM2 MUTATED ZFPM2 WILD-TYPE 
              6             218 
[1] "E2F7 MUTATION ANALYSIS"
[1] 3
  E2F7 MUTATED E2F7 WILD-TYPE 
            10            214 
  E2F7 MUTATED E2F7 WILD-TYPE 
            10            214 
[1] "NCOA6 MUTATION ANALYSIS"
[1] 3
  NCOA6 MUTATED NCOA6 WILD-TYPE 
              8             216 
  NCOA6 MUTATED NCOA6 WILD-TYPE 
              8             216 
[1] "SLC6A15 MUTATION ANALYSIS"
[1] 3
  SLC6A15 MUTATED SLC6A15 WILD-TYPE 
               10               214 
  SLC6A15 MUTATED SLC6A15 WILD-TYPE 
               10               214 
[1] "C22ORF40 MUTATION ANALYSIS"
[1] 3
  C22ORF40 MUTATED C22ORF40 WILD-TYPE 
                 3                221 
  C22ORF40 MUTATED C22ORF40 WILD-TYPE 
                 3                221 
[1] "C12ORF29 MUTATION ANALYSIS"
[1] 3
  C12ORF29 MUTATED C12ORF29 WILD-TYPE 
                 3                221 
  C12ORF29 MUTATED C12ORF29 WILD-TYPE 
                 3                221 
[1] "CCDC76 MUTATION ANALYSIS"
[1] 3
  CCDC76 MUTATED CCDC76 WILD-TYPE 
               4              220 
  CCDC76 MUTATED CCDC76 WILD-TYPE 
               4              220 
[1] "UGGT2 MUTATION ANALYSIS"
[1] 3
  UGGT2 MUTATED UGGT2 WILD-TYPE 
             12             212 
  UGGT2 MUTATED UGGT2 WILD-TYPE 
             12             212 
[1] "TOX MUTATION ANALYSIS"
[1] 3
  TOX MUTATED TOX WILD-TYPE 
            8           216 
  TOX MUTATED TOX WILD-TYPE 
            8           216 
[1] "COL11A1 MUTATION ANALYSIS"
[1] 3
  COL11A1 MUTATED COL11A1 WILD-TYPE 
               18               206 
  COL11A1 MUTATED COL11A1 WILD-TYPE 
               18               206 
[1] "DPY19L1 MUTATION ANALYSIS"
[1] 3
  DPY19L1 MUTATED DPY19L1 WILD-TYPE 
                5               219 
  DPY19L1 MUTATED DPY19L1 WILD-TYPE 
                5               219 
[1] "ERBB3 MUTATION ANALYSIS"
[1] 3
  ERBB3 MUTATED ERBB3 WILD-TYPE 
             14             210 
  ERBB3 MUTATED ERBB3 WILD-TYPE 
             14             210 
[1] "PCDH18 MUTATION ANALYSIS"
[1] 3
  PCDH18 MUTATED PCDH18 WILD-TYPE 
              14              210 
  PCDH18 MUTATED PCDH18 WILD-TYPE 
              14              210 
[1] "CFHR5 MUTATION ANALYSIS"
[1] 3
  CFHR5 MUTATED CFHR5 WILD-TYPE 
              6             218 
  CFHR5 MUTATED CFHR5 WILD-TYPE 
              6             218 
[1] "UGT2A1 MUTATION ANALYSIS"
[1] 3
  UGT2A1 MUTATED UGT2A1 WILD-TYPE 
               7              217 
  UGT2A1 MUTATED UGT2A1 WILD-TYPE 
               7              217 
[1] "ZNF99 MUTATION ANALYSIS"
[1] 3
  ZNF99 MUTATED ZNF99 WILD-TYPE 
             11             213 
  ZNF99 MUTATED ZNF99 WILD-TYPE 
             11             213 
[1] "ARL2BP MUTATION ANALYSIS"
[1] 3
  ARL2BP MUTATED ARL2BP WILD-TYPE 
               5              219 
  ARL2BP MUTATED ARL2BP WILD-TYPE 
               5              219 
[1] "TIGIT MUTATION ANALYSIS"
[1] 3
  TIGIT MUTATED TIGIT WILD-TYPE 
              4             220 
  TIGIT MUTATED TIGIT WILD-TYPE 
              4             220 
[1] "ZNF334 MUTATION ANALYSIS"
[1] 3
  ZNF334 MUTATED ZNF334 WILD-TYPE 
               8              216 
  ZNF334 MUTATED ZNF334 WILD-TYPE 
               8              216 
[1] "SLCO6A1 MUTATION ANALYSIS"
[1] 3
  SLCO6A1 MUTATED SLCO6A1 WILD-TYPE 
               10               214 
  SLCO6A1 MUTATED SLCO6A1 WILD-TYPE 
               10               214 
[1] "CDC27 MUTATION ANALYSIS"
[1] 3
  CDC27 MUTATED CDC27 WILD-TYPE 
             10             214 
  CDC27 MUTATED CDC27 WILD-TYPE 
             10             214 
[1] "NAP1L3 MUTATION ANALYSIS"
[1] 3
  NAP1L3 MUTATED NAP1L3 WILD-TYPE 
               7              217 
  NAP1L3 MUTATED NAP1L3 WILD-TYPE 
               7              217 
[1] "ROBO2 MUTATION ANALYSIS"
[1] 3
  ROBO2 MUTATED ROBO2 WILD-TYPE 
             12             212 
  ROBO2 MUTATED ROBO2 WILD-TYPE 
             12             212 
[1] "BLID MUTATION ANALYSIS"
[1] 3
  BLID MUTATED BLID WILD-TYPE 
             3            221 
  BLID MUTATED BLID WILD-TYPE 
             3            221 
[1] "ITK MUTATION ANALYSIS"
[1] 3
  ITK MUTATED ITK WILD-TYPE 
           10           214 
  ITK MUTATED ITK WILD-TYPE 
           10           214 
[1] "PTPN12 MUTATION ANALYSIS"
[1] 3
  PTPN12 MUTATED PTPN12 WILD-TYPE 
              10              214 
  PTPN12 MUTATED PTPN12 WILD-TYPE 
              10              214 
[1] "TRPC6 MUTATION ANALYSIS"
[1] 3
  TRPC6 MUTATED TRPC6 WILD-TYPE 
             11             213 
  TRPC6 MUTATED TRPC6 WILD-TYPE 
             11             213 
[1] "PROKR1 MUTATION ANALYSIS"
[1] 3
  PROKR1 MUTATED PROKR1 WILD-TYPE 
               9              215 
  PROKR1 MUTATED PROKR1 WILD-TYPE 
               9              215 
[1] "KCNB2 MUTATION ANALYSIS"
[1] 3
  KCNB2 MUTATED KCNB2 WILD-TYPE 
             11             213 
  KCNB2 MUTATED KCNB2 WILD-TYPE 
             11             213 
[1] "CD180 MUTATION ANALYSIS"
[1] 3
  CD180 MUTATED CD180 WILD-TYPE 
              9             215 
  CD180 MUTATED CD180 WILD-TYPE 
              9             215 
[1] "OR4A15 MUTATION ANALYSIS"
[1] 3
  OR4A15 MUTATED OR4A15 WILD-TYPE 
               6              218 
  OR4A15 MUTATED OR4A15 WILD-TYPE 
               6              218 
[1] "COL12A1 MUTATION ANALYSIS"
[1] 3
  COL12A1 MUTATED COL12A1 WILD-TYPE 
               21               203 
  COL12A1 MUTATED COL12A1 WILD-TYPE 
               21               203 
[1] "LRRK2 MUTATION ANALYSIS"
[1] 3
  LRRK2 MUTATED LRRK2 WILD-TYPE 
             19             205 
  LRRK2 MUTATED LRRK2 WILD-TYPE 
             19             205 
[1] "POTEB MUTATION ANALYSIS"
[1] 3
  POTEB MUTATED POTEB WILD-TYPE 
              8             216 
  POTEB MUTATED POTEB WILD-TYPE 
              8             216 
[1] "SLC9A9 MUTATION ANALYSIS"
[1] 3
  SLC9A9 MUTATED SLC9A9 WILD-TYPE 
              12              212 
  SLC9A9 MUTATED SLC9A9 WILD-TYPE 
              12              212 
[1] "GGA2 MUTATION ANALYSIS"
[1] 3
  GGA2 MUTATED GGA2 WILD-TYPE 
             8            216 
  GGA2 MUTATED GGA2 WILD-TYPE 
             8            216 
[1] "TASP1 MUTATION ANALYSIS"
[1] 3
  TASP1 MUTATED TASP1 WILD-TYPE 
              5             219 
  TASP1 MUTATED TASP1 WILD-TYPE 
              5             219 
[1] "TMPRSS11A MUTATION ANALYSIS"
[1] 3
  TMPRSS11A MUTATED TMPRSS11A WILD-TYPE 
                  7                 217 
  TMPRSS11A MUTATED TMPRSS11A WILD-TYPE 
                  7                 217 
[1] "ERBB2 MUTATION ANALYSIS"
[1] 3
  ERBB2 MUTATED ERBB2 WILD-TYPE 
              9             215 
  ERBB2 MUTATED ERBB2 WILD-TYPE 
              9             215 
[1] "MAP7 MUTATION ANALYSIS"
[1] 3
  MAP7 MUTATED MAP7 WILD-TYPE 
            10            214 
  MAP7 MUTATED MAP7 WILD-TYPE 
            10            214 
[1] "MARCH10 MUTATION ANALYSIS"
[1] 3
  MARCH10 MUTATED MARCH10 WILD-TYPE 
                9               215 
  MARCH10 MUTATED MARCH10 WILD-TYPE 
                9               215 
[1] "MLF1 MUTATION ANALYSIS"
[1] 3
  MLF1 MUTATED MLF1 WILD-TYPE 
             4            220 
  MLF1 MUTATED MLF1 WILD-TYPE 
             4            220 
[1] "GRM7 MUTATION ANALYSIS"
[1] 3
  GRM7 MUTATED GRM7 WILD-TYPE 
            11            213 
  GRM7 MUTATED GRM7 WILD-TYPE 
            11            213 
[1] "CHST4 MUTATION ANALYSIS"
[1] 3
  CHST4 MUTATED CHST4 WILD-TYPE 
              7             217 
  CHST4 MUTATED CHST4 WILD-TYPE 
              7             217 
[1] "SLITRK2 MUTATION ANALYSIS"
[1] 3
  SLITRK2 MUTATED SLITRK2 WILD-TYPE 
               10               214 
  SLITRK2 MUTATED SLITRK2 WILD-TYPE 
               10               214 
[1] "VCAN MUTATION ANALYSIS"
[1] 3
  VCAN MUTATED VCAN WILD-TYPE 
            19            205 
  VCAN MUTATED VCAN WILD-TYPE 
            19            205 
[1] "ZNF585A MUTATION ANALYSIS"
[1] 3
  ZNF585A MUTATED ZNF585A WILD-TYPE 
               10               214 
  ZNF585A MUTATED ZNF585A WILD-TYPE 
               10               214 
[1] "OR6T1 MUTATION ANALYSIS"
[1] 3
  OR6T1 MUTATED OR6T1 WILD-TYPE 
              6             218 
  OR6T1 MUTATED OR6T1 WILD-TYPE 
              6             218 
[1] "PTPRT MUTATION ANALYSIS"
[1] 3
  PTPRT MUTATED PTPRT WILD-TYPE 
             14             210 
  PTPRT MUTATED PTPRT WILD-TYPE 
             14             210 
[1] "RYR2 MUTATION ANALYSIS"
[1] 3
  RYR2 MUTATED RYR2 WILD-TYPE 
            29            195 
  RYR2 MUTATED RYR2 WILD-TYPE 
            29            195 
[1] "CHST9 MUTATION ANALYSIS"
[1] 3
  CHST9 MUTATED CHST9 WILD-TYPE 
              8             216 
  CHST9 MUTATED CHST9 WILD-TYPE 
              8             216 
[1] "CTSO MUTATION ANALYSIS"
[1] 3
  CTSO MUTATED CTSO WILD-TYPE 
             6            218 
  CTSO MUTATED CTSO WILD-TYPE 
             6            218 
[1] "DOK5 MUTATION ANALYSIS"
[1] 3
  DOK5 MUTATED DOK5 WILD-TYPE 
             6            218 
  DOK5 MUTATED DOK5 WILD-TYPE 
             6            218 
[1] "OR5W2 MUTATION ANALYSIS"
[1] 3
  OR5W2 MUTATED OR5W2 WILD-TYPE 
              7             217 
  OR5W2 MUTATED OR5W2 WILD-TYPE 
              7             217 
[1] "DCC MUTATION ANALYSIS"
[1] 3
  DCC MUTATED DCC WILD-TYPE 
           13           211 
  DCC MUTATED DCC WILD-TYPE 
           13           211 
[1] "PCDHA13 MUTATION ANALYSIS"
[1] 3
  PCDHA13 MUTATED PCDHA13 WILD-TYPE 
               14               210 
  PCDHA13 MUTATED PCDHA13 WILD-TYPE 
               14               210 
[1] "F9 MUTATION ANALYSIS"
[1] 3
  F9 MUTATED F9 WILD-TYPE 
           6          218 
  F9 MUTATED F9 WILD-TYPE 
           6          218 
[1] "SLC25A13 MUTATION ANALYSIS"
[1] 3
  SLC25A13 MUTATED SLC25A13 WILD-TYPE 
                 8                216 
  SLC25A13 MUTATED SLC25A13 WILD-TYPE 
                 8                216 
[1] "GALNTL5 MUTATION ANALYSIS"
[1] 3
  GALNTL5 MUTATED GALNTL5 WILD-TYPE 
                8               216 
  GALNTL5 MUTATED GALNTL5 WILD-TYPE 
                8               216 
[1] "SESTD1 MUTATION ANALYSIS"
[1] 3
  SESTD1 MUTATED SESTD1 WILD-TYPE 
               8              216 
  SESTD1 MUTATED SESTD1 WILD-TYPE 
               8              216 
[1] "CNGB3 MUTATION ANALYSIS"
[1] 3
  CNGB3 MUTATED CNGB3 WILD-TYPE 
             10             214 
  CNGB3 MUTATED CNGB3 WILD-TYPE 
             10             214 
[1] "C2ORF44 MUTATION ANALYSIS"
[1] 3
  C2ORF44 MUTATED C2ORF44 WILD-TYPE 
                4               220 
  C2ORF44 MUTATED C2ORF44 WILD-TYPE 
                4               220 
[1] "INPP5D MUTATION ANALYSIS"
[1] 3
  INPP5D MUTATED INPP5D WILD-TYPE 
               4              220 
  INPP5D MUTATED INPP5D WILD-TYPE 
               4              220 
[1] "UMOD MUTATION ANALYSIS"
[1] 3
  UMOD MUTATED UMOD WILD-TYPE 
             7            217 
  UMOD MUTATED UMOD WILD-TYPE 
             7            217 
[1] "ZNF521 MUTATION ANALYSIS"
[1] 3
  ZNF521 MUTATED ZNF521 WILD-TYPE 
              13              211 
  ZNF521 MUTATED ZNF521 WILD-TYPE 
              13              211 
[1] "ADCY2 MUTATION ANALYSIS"
[1] 3
  ADCY2 MUTATED ADCY2 WILD-TYPE 
             14             210 
  ADCY2 MUTATED ADCY2 WILD-TYPE 
             14             210 
[1] "CYP7B1 MUTATION ANALYSIS"
[1] 3
  CYP7B1 MUTATED CYP7B1 WILD-TYPE 
               7              217 
  CYP7B1 MUTATED CYP7B1 WILD-TYPE 
               7              217 
[1] "CD1E MUTATION ANALYSIS"
[1] 3
  CD1E MUTATED CD1E WILD-TYPE 
             6            218 
  CD1E MUTATED CD1E WILD-TYPE 
             6            218 
[1] "ZNF583 MUTATION ANALYSIS"
[1] 3
  ZNF583 MUTATED ZNF583 WILD-TYPE 
               7              217 
  ZNF583 MUTATED ZNF583 WILD-TYPE 
               7              217 
[1] "FLG2 MUTATION ANALYSIS"
[1] 3
  FLG2 MUTATED FLG2 WILD-TYPE 
            13            211 
  FLG2 MUTATED FLG2 WILD-TYPE 
            13            211 
[1] "RARS2 MUTATION ANALYSIS"
[1] 3
  RARS2 MUTATED RARS2 WILD-TYPE 
              5             219 
  RARS2 MUTATED RARS2 WILD-TYPE 
              5             219 
[1] "C4ORF37 MUTATION ANALYSIS"
[1] 3
  C4ORF37 MUTATED C4ORF37 WILD-TYPE 
                8               216 
  C4ORF37 MUTATED C4ORF37 WILD-TYPE 
                8               216 
[1] "NLRP4 MUTATION ANALYSIS"
[1] 3
  NLRP4 MUTATED NLRP4 WILD-TYPE 
             14             210 
  NLRP4 MUTATED NLRP4 WILD-TYPE 
             14             210 
[1] "PEX3 MUTATION ANALYSIS"
[1] 3
  PEX3 MUTATED PEX3 WILD-TYPE 
             7            217 
  PEX3 MUTATED PEX3 WILD-TYPE 
             7            217 
[1] "C6ORF204 MUTATION ANALYSIS"
[1] 3
  C6ORF204 MUTATED C6ORF204 WILD-TYPE 
                 8                216 
  C6ORF204 MUTATED C6ORF204 WILD-TYPE 
                 8                216 
[1] "OR8J1 MUTATION ANALYSIS"
[1] 3
  OR8J1 MUTATED OR8J1 WILD-TYPE 
              5             219 
  OR8J1 MUTATED OR8J1 WILD-TYPE 
              5             219 
[1] "ARHGAP5 MUTATION ANALYSIS"
[1] 3
  ARHGAP5 MUTATED ARHGAP5 WILD-TYPE 
                9               215 
  ARHGAP5 MUTATED ARHGAP5 WILD-TYPE 
                9               215 
[1] "SLCO1B3 MUTATION ANALYSIS"
[1] 3
  SLCO1B3 MUTATED SLCO1B3 WILD-TYPE 
                8               216 
  SLCO1B3 MUTATED SLCO1B3 WILD-TYPE 
                8               216 
[1] "SPATA8 MUTATION ANALYSIS"
[1] 3
  SPATA8 MUTATED SPATA8 WILD-TYPE 
               3              221 
  SPATA8 MUTATED SPATA8 WILD-TYPE 
               3              221 
[1] "SPRED1 MUTATION ANALYSIS"
[1] 3
  SPRED1 MUTATED SPRED1 WILD-TYPE 
               6              218 
  SPRED1 MUTATED SPRED1 WILD-TYPE 
               6              218 
[1] "ZNF329 MUTATION ANALYSIS"
[1] 3
  ZNF329 MUTATED ZNF329 WILD-TYPE 
               7              217 
  ZNF329 MUTATED ZNF329 WILD-TYPE 
               7              217 
[1] "ADAMTS12 MUTATION ANALYSIS"
[1] 3
  ADAMTS12 MUTATED ADAMTS12 WILD-TYPE 
                18                206 
  ADAMTS12 MUTATED ADAMTS12 WILD-TYPE 
                18                206 
[1] "CLECL1 MUTATION ANALYSIS"
[1] 3
  CLECL1 MUTATED CLECL1 WILD-TYPE 
               4              220 
  CLECL1 MUTATED CLECL1 WILD-TYPE 
               4              220 
[1] "COL22A1 MUTATION ANALYSIS"
[1] 3
  COL22A1 MUTATED COL22A1 WILD-TYPE 
               16               208 
  COL22A1 MUTATED COL22A1 WILD-TYPE 
               16               208 
[1] "CWF19L2 MUTATION ANALYSIS"
[1] 3
  CWF19L2 MUTATED CWF19L2 WILD-TYPE 
                8               216 
  CWF19L2 MUTATED CWF19L2 WILD-TYPE 
                8               216 
[1] "GPR158 MUTATION ANALYSIS"
[1] 3
  GPR158 MUTATED GPR158 WILD-TYPE 
              10              214 
  GPR158 MUTATED GPR158 WILD-TYPE 
              10              214 
[1] "MAP1B MUTATION ANALYSIS"
[1] 3
  MAP1B MUTATED MAP1B WILD-TYPE 
             18             206 
  MAP1B MUTATED MAP1B WILD-TYPE 
             18             206 
[1] "OR2T6 MUTATION ANALYSIS"
[1] 3
  OR2T6 MUTATED OR2T6 WILD-TYPE 
              5             219 
  OR2T6 MUTATED OR2T6 WILD-TYPE 
              5             219 
[1] "RPE65 MUTATION ANALYSIS"
[1] 3
  RPE65 MUTATED RPE65 WILD-TYPE 
              8             216 
  RPE65 MUTATED RPE65 WILD-TYPE 
              8             216 
[1] "SGCG MUTATION ANALYSIS"
[1] 3
  SGCG MUTATED SGCG WILD-TYPE 
             7            217 
  SGCG MUTATED SGCG WILD-TYPE 
             7            217 
[1] "NDUFAF4 MUTATION ANALYSIS"
[1] 3
  NDUFAF4 MUTATED NDUFAF4 WILD-TYPE 
                5               219 
  NDUFAF4 MUTATED NDUFAF4 WILD-TYPE 
                5               219 
[1] "OR8K1 MUTATION ANALYSIS"
[1] 3
  OR8K1 MUTATED OR8K1 WILD-TYPE 
              6             218 
  OR8K1 MUTATED OR8K1 WILD-TYPE 
              6             218 
[1] "TNNI3K MUTATION ANALYSIS"
[1] 3
  TNNI3K MUTATED TNNI3K WILD-TYPE 
              10              214 
  TNNI3K MUTATED TNNI3K WILD-TYPE 
              10              214 
[1] "C1ORF173 MUTATION ANALYSIS"
[1] 3
  C1ORF173 MUTATED C1ORF173 WILD-TYPE 
                11                213 
  C1ORF173 MUTATED C1ORF173 WILD-TYPE 
                11                213 
[1] "GALNT14 MUTATION ANALYSIS"
[1] 3
  GALNT14 MUTATED GALNT14 WILD-TYPE 
               10               214 
  GALNT14 MUTATED GALNT14 WILD-TYPE 
               10               214 
[1] "SLC44A5 MUTATION ANALYSIS"
[1] 3
  SLC44A5 MUTATED SLC44A5 WILD-TYPE 
                9               215 
  SLC44A5 MUTATED SLC44A5 WILD-TYPE 
                9               215 
[1] "TCERG1L MUTATION ANALYSIS"
[1] 3
  TCERG1L MUTATED TCERG1L WILD-TYPE 
                4               220 
  TCERG1L MUTATED TCERG1L WILD-TYPE 
                4               220 
[1] "ARAP2 MUTATION ANALYSIS"
[1] 3
  ARAP2 MUTATED ARAP2 WILD-TYPE 
             13             211 
  ARAP2 MUTATED ARAP2 WILD-TYPE 
             13             211 
[1] "CD93 MUTATION ANALYSIS"
[1] 3
  CD93 MUTATED CD93 WILD-TYPE 
             7            217 
  CD93 MUTATED CD93 WILD-TYPE 
             7            217 
[1] "NOC3L MUTATION ANALYSIS"
[1] 3
  NOC3L MUTATED NOC3L WILD-TYPE 
              8             216 
  NOC3L MUTATED NOC3L WILD-TYPE 
              8             216 
[1] "SLC24A2 MUTATION ANALYSIS"
[1] 3
  SLC24A2 MUTATED SLC24A2 WILD-TYPE 
                7               217 
  SLC24A2 MUTATED SLC24A2 WILD-TYPE 
                7               217 
[1] "GABRG2 MUTATION ANALYSIS"
[1] 3
  GABRG2 MUTATED GABRG2 WILD-TYPE 
               8              216 
  GABRG2 MUTATED GABRG2 WILD-TYPE 
               8              216 
[1] "TRIM44 MUTATION ANALYSIS"
[1] 3
  TRIM44 MUTATED TRIM44 WILD-TYPE 
               6              218 
  TRIM44 MUTATED TRIM44 WILD-TYPE 
               6              218 
[1] "ANKIB1 MUTATION ANALYSIS"
[1] 3
  ANKIB1 MUTATED ANKIB1 WILD-TYPE 
               8              216 
  ANKIB1 MUTATED ANKIB1 WILD-TYPE 
               8              216 
[1] "RHOA MUTATION ANALYSIS"
[1] 3
  RHOA MUTATED RHOA WILD-TYPE 
             5            219 
  RHOA MUTATED RHOA WILD-TYPE 
             5            219 
[1] "PPP3CB MUTATION ANALYSIS"
[1] 3
  PPP3CB MUTATED PPP3CB WILD-TYPE 
               5              219 
  PPP3CB MUTATED PPP3CB WILD-TYPE 
               5              219 
[1] "NTSR2 MUTATION ANALYSIS"
[1] 3
  NTSR2 MUTATED NTSR2 WILD-TYPE 
              5             219 
  NTSR2 MUTATED NTSR2 WILD-TYPE 
              5             219 
[1] "TFAP2D MUTATION ANALYSIS"
[1] 3
  TFAP2D MUTATED TFAP2D WILD-TYPE 
               7              217 
  TFAP2D MUTATED TFAP2D WILD-TYPE 
               7              217 
[1] "DYRK3 MUTATION ANALYSIS"
[1] 3
  DYRK3 MUTATED DYRK3 WILD-TYPE 
              7             217 
  DYRK3 MUTATED DYRK3 WILD-TYPE 
              7             217 
[1] "PCDHB2 MUTATION ANALYSIS"
[1] 3
  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
              14              210 
  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
              14              210 
[1] "SCN10A MUTATION ANALYSIS"
[1] 3
  SCN10A MUTATED SCN10A WILD-TYPE 
              15              209 
  SCN10A MUTATED SCN10A WILD-TYPE 
              15              209 
[1] "KCNH5 MUTATION ANALYSIS"
[1] 3
  KCNH5 MUTATED KCNH5 WILD-TYPE 
             13             211 
  KCNH5 MUTATED KCNH5 WILD-TYPE 
             13             211 
[1] "ZNF429 MUTATION ANALYSIS"
[1] 3
  ZNF429 MUTATED ZNF429 WILD-TYPE 
               9              215 
  ZNF429 MUTATED ZNF429 WILD-TYPE 
               9              215 
[1] "OR10G9 MUTATION ANALYSIS"
[1] 3
  OR10G9 MUTATED OR10G9 WILD-TYPE 
               6              218 
  OR10G9 MUTATED OR10G9 WILD-TYPE 
               6              218 
[1] "HYDIN MUTATION ANALYSIS"
[1] 3
  HYDIN MUTATED HYDIN WILD-TYPE 
             25             199 
  HYDIN MUTATED HYDIN WILD-TYPE 
             25             199 
[1] "AMPD1 MUTATION ANALYSIS"
[1] 3
  AMPD1 MUTATED AMPD1 WILD-TYPE 
              9             215 
  AMPD1 MUTATED AMPD1 WILD-TYPE 
              9             215 
[1] "PRG2 MUTATION ANALYSIS"
[1] 3
  PRG2 MUTATED PRG2 WILD-TYPE 
             5            219 
  PRG2 MUTATED PRG2 WILD-TYPE 
             5            219 
[1] "LRFN5 MUTATION ANALYSIS"
[1] 3
  LRFN5 MUTATED LRFN5 WILD-TYPE 
              8             216 
  LRFN5 MUTATED LRFN5 WILD-TYPE 
              8             216 
[1] "CNTNAP2 MUTATION ANALYSIS"
[1] 3
  CNTNAP2 MUTATED CNTNAP2 WILD-TYPE 
               12               212 
  CNTNAP2 MUTATED CNTNAP2 WILD-TYPE 
               12               212 
[1] "SLC8A1 MUTATION ANALYSIS"
[1] 3
  SLC8A1 MUTATED SLC8A1 WILD-TYPE 
              13              211 
  SLC8A1 MUTATED SLC8A1 WILD-TYPE 
              13              211 
[1] "AKR1C2 MUTATION ANALYSIS"
[1] 3
  AKR1C2 MUTATED AKR1C2 WILD-TYPE 
               4              220 
  AKR1C2 MUTATED AKR1C2 WILD-TYPE 
               4              220 
[1] "FSTL1 MUTATION ANALYSIS"
[1] 3
  FSTL1 MUTATED FSTL1 WILD-TYPE 
              6             218 
  FSTL1 MUTATED FSTL1 WILD-TYPE 
              6             218 
[1] "MGAT4C MUTATION ANALYSIS"
[1] 3
  MGAT4C MUTATED MGAT4C WILD-TYPE 
               7              217 
  MGAT4C MUTATED MGAT4C WILD-TYPE 
               7              217 
[1] "VILL MUTATION ANALYSIS"
[1] 3
  VILL MUTATED VILL WILD-TYPE 
             5            219 
  VILL MUTATED VILL WILD-TYPE 
             5            219 
[1] "SYT14 MUTATION ANALYSIS"
[1] 3
  SYT14 MUTATED SYT14 WILD-TYPE 
              6             218 
  SYT14 MUTATED SYT14 WILD-TYPE 
              6             218 
[1] "ELAVL2 MUTATION ANALYSIS"
[1] 3
  ELAVL2 MUTATED ELAVL2 WILD-TYPE 
               7              217 
  ELAVL2 MUTATED ELAVL2 WILD-TYPE 
               7              217 
[1] "ZFP28 MUTATION ANALYSIS"
[1] 3
  ZFP28 MUTATED ZFP28 WILD-TYPE 
              8             216 
  ZFP28 MUTATED ZFP28 WILD-TYPE 
              8             216 
[1] "ZNF350 MUTATION ANALYSIS"
[1] 3
  ZNF350 MUTATED ZNF350 WILD-TYPE 
               7              217 
  ZNF350 MUTATED ZNF350 WILD-TYPE 
               7              217 
[1] "TMBIM4 MUTATION ANALYSIS"
[1] 3
  TMBIM4 MUTATED TMBIM4 WILD-TYPE 
               4              220 
  TMBIM4 MUTATED TMBIM4 WILD-TYPE 
               4              220 
[1] "RSPO2 MUTATION ANALYSIS"
[1] 3
  RSPO2 MUTATED RSPO2 WILD-TYPE 
              6             218 
  RSPO2 MUTATED RSPO2 WILD-TYPE 
              6             218 
[1] "AURKC MUTATION ANALYSIS"
[1] 3
  AURKC MUTATED AURKC WILD-TYPE 
              7             217 
  AURKC MUTATED AURKC WILD-TYPE 
              7             217 
[1] "GFRA1 MUTATION ANALYSIS"
[1] 3
  GFRA1 MUTATED GFRA1 WILD-TYPE 
              8             216 
  GFRA1 MUTATED GFRA1 WILD-TYPE 
              8             216 
[1] "OR5B21 MUTATION ANALYSIS"
[1] 3
  OR5B21 MUTATED OR5B21 WILD-TYPE 
               4              220 
  OR5B21 MUTATED OR5B21 WILD-TYPE 
               4              220 
[1] "POU3F4 MUTATION ANALYSIS"
[1] 3
  POU3F4 MUTATED POU3F4 WILD-TYPE 
               7              217 
  POU3F4 MUTATED POU3F4 WILD-TYPE 
               7              217 
[1] "PRDM2 MUTATION ANALYSIS"
[1] 3
  PRDM2 MUTATED PRDM2 WILD-TYPE 
             15             209 
  PRDM2 MUTATED PRDM2 WILD-TYPE 
             15             209 
[1] "QRFPR MUTATION ANALYSIS"
[1] 3
  QRFPR MUTATED QRFPR WILD-TYPE 
              7             217 
  QRFPR MUTATED QRFPR WILD-TYPE 
              7             217 
[1] "STS MUTATION ANALYSIS"
[1] 3
  STS MUTATED STS WILD-TYPE 
            7           217 
  STS MUTATED STS WILD-TYPE 
            7           217 
[1] "GPR87 MUTATION ANALYSIS"
[1] 3
  GPR87 MUTATED GPR87 WILD-TYPE 
              5             219 
  GPR87 MUTATED GPR87 WILD-TYPE 
              5             219 
[1] "MDGA2 MUTATION ANALYSIS"
[1] 3
  MDGA2 MUTATED MDGA2 WILD-TYPE 
             10             214 
  MDGA2 MUTATED MDGA2 WILD-TYPE 
             10             214 
[1] "ADAM7 MUTATION ANALYSIS"
[1] 3
  ADAM7 MUTATED ADAM7 WILD-TYPE 
             10             214 
  ADAM7 MUTATED ADAM7 WILD-TYPE 
             10             214 
[1] "C5ORF36 MUTATION ANALYSIS"
[1] 3
  C5ORF36 MUTATED C5ORF36 WILD-TYPE 
                5               219 
  C5ORF36 MUTATED C5ORF36 WILD-TYPE 
                5               219 
[1] "TSG101 MUTATION ANALYSIS"
[1] 3
  TSG101 MUTATED TSG101 WILD-TYPE 
               4              220 
  TSG101 MUTATED TSG101 WILD-TYPE 
               4              220 
[1] "ARHGEF12 MUTATION ANALYSIS"
[1] 3
  ARHGEF12 MUTATED ARHGEF12 WILD-TYPE 
                 5                219 
  ARHGEF12 MUTATED ARHGEF12 WILD-TYPE 
                 5                219 
[1] "LRRC7 MUTATION ANALYSIS"
[1] 3
  LRRC7 MUTATED LRRC7 WILD-TYPE 
             12             212 
  LRRC7 MUTATED LRRC7 WILD-TYPE 
             12             212 
[1] "SLCO4C1 MUTATION ANALYSIS"
[1] 3
  SLCO4C1 MUTATED SLCO4C1 WILD-TYPE 
               11               213 
  SLCO4C1 MUTATED SLCO4C1 WILD-TYPE 
               11               213 
[1] "TGFB2 MUTATION ANALYSIS"
[1] 3
  TGFB2 MUTATED TGFB2 WILD-TYPE 
              6             218 
  TGFB2 MUTATED TGFB2 WILD-TYPE 
              6             218 
[1] "ASTN2 MUTATION ANALYSIS"
[1] 3
  ASTN2 MUTATED ASTN2 WILD-TYPE 
             12             212 
  ASTN2 MUTATED ASTN2 WILD-TYPE 
             12             212 
[1] "OR5D18 MUTATION ANALYSIS"
[1] 3
  OR5D18 MUTATED OR5D18 WILD-TYPE 
               5              219 
  OR5D18 MUTATED OR5D18 WILD-TYPE 
               5              219 
[1] "P2RY14 MUTATION ANALYSIS"
[1] 3
  P2RY14 MUTATED P2RY14 WILD-TYPE 
               6              218 
  P2RY14 MUTATED P2RY14 WILD-TYPE 
               6              218 
[1] "RNF17 MUTATION ANALYSIS"
[1] 3
  RNF17 MUTATED RNF17 WILD-TYPE 
             12             212 
  RNF17 MUTATED RNF17 WILD-TYPE 
             12             212 
[1] "SACS MUTATION ANALYSIS"
[1] 3
  SACS MUTATED SACS WILD-TYPE 
            22            202 
  SACS MUTATED SACS WILD-TYPE 
            22            202 
[1] "RDH16 MUTATION ANALYSIS"
[1] 3
  RDH16 MUTATED RDH16 WILD-TYPE 
              3             221 
  RDH16 MUTATED RDH16 WILD-TYPE 
              3             221 
[1] "ADAM2 MUTATION ANALYSIS"
[1] 3
  ADAM2 MUTATED ADAM2 WILD-TYPE 
              8             216 
  ADAM2 MUTATED ADAM2 WILD-TYPE 
              8             216 
[1] "ADAMTS5 MUTATION ANALYSIS"
[1] 3
  ADAMTS5 MUTATED ADAMTS5 WILD-TYPE 
               12               212 
  ADAMTS5 MUTATED ADAMTS5 WILD-TYPE 
               12               212 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "HISTOLOGICALTYPE"                      
[11] "PATHOLOGICSPREAD(PT)"                  
[12] "PATHOLOGICSPREAD(PN)"                  
[13] "PATHOLOGICSPREAD(M)"                   
[14] "RADIATIONS.RADIATION.REGIMENINDICATION"
[15] "NEOADJUVANTTHERAPY"                    
[16] "BATCHNUMBER"                           

Input Data has 16 rows and 224 columns.

[1] "Batch" "16"   
[1] "Last Follow UP"
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
         423          503          523          447          541          437 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3514 TCGA-AA-3516 
         472          332          278          246           NA           NA 
TCGA-AA-3517 TCGA-AA-3518 TCGA-AA-3519 TCGA-AA-3520 TCGA-AA-3521 TCGA-AA-3522 
          NA           31           NA           NA           NA           NA 
TCGA-AA-3524 TCGA-AA-3525 TCGA-AA-3526 TCGA-AA-3527 TCGA-AA-3529 TCGA-AA-3530 
          NA           NA           30           NA           NA           NA 
TCGA-AA-3531 TCGA-AA-3532 TCGA-AA-3534 TCGA-AA-3538 TCGA-AA-3542 TCGA-AA-3543 
          NA           NA           NA           NA           NA           NA 
TCGA-AA-3544 TCGA-AA-3548 TCGA-AA-3549 TCGA-AA-3552 TCGA-AA-3553 TCGA-AA-3554 
          NA           NA           NA           NA           NA           NA 
TCGA-AA-3555 TCGA-AA-3556 TCGA-AA-3558 TCGA-AA-3560 TCGA-AA-3561 TCGA-AA-3562 
          30           NA           NA           NA           NA           31 
TCGA-AA-3664 TCGA-AA-3666 TCGA-AA-3667 TCGA-AA-3672 TCGA-AA-3673 TCGA-AA-3678 
          NA           31           NA           NA           NA           NA 
TCGA-AA-3679 TCGA-AA-3680 TCGA-AA-3681 TCGA-AA-3684 TCGA-AA-3685 TCGA-AA-3688 
          30           NA           NA           NA           30           NA 
TCGA-AA-3692 TCGA-AA-3693 TCGA-AA-3695 TCGA-AA-3696 TCGA-AA-3710 TCGA-AA-3715 
          NA           NA           NA           NA           31           30 
TCGA-AA-3811 TCGA-AA-3812 TCGA-AA-3814 TCGA-AA-3818 TCGA-AA-3819 TCGA-AA-3821 
          30           NA           NA           NA           NA           NA 
TCGA-AA-3831 TCGA-AA-3833 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3845 
          NA           NA           31           31           28           NA 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3850 TCGA-AA-3851 TCGA-AA-3852 TCGA-AA-3854 
          30           30           NA           NA           NA           31 
TCGA-AA-3855 TCGA-AA-3856 TCGA-AA-3858 TCGA-AA-3860 TCGA-AA-3864 TCGA-AA-3866 
          NA           NA           NA           NA           NA           NA 
TCGA-AA-3867 TCGA-AA-3869 TCGA-AA-3870 TCGA-AA-3872 TCGA-AA-3875 TCGA-AA-3877 
          NA           NA           NA           NA           NA           30 
TCGA-AA-3930 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
          NA           30           31           30           30           31 
TCGA-AA-3955 TCGA-AA-3956 TCGA-AA-3966 TCGA-AA-3971 TCGA-AA-3972 TCGA-AA-3973 
          NA           NA           31           NA           NA           NA 
TCGA-AA-3975 TCGA-AA-3976 TCGA-AA-3977 TCGA-AA-3979 TCGA-AA-3980 TCGA-AA-3982 
          30           NA           31           NA           NA           NA 
TCGA-AA-3984 TCGA-AA-3986 TCGA-AA-3989 TCGA-AA-3994 TCGA-AA-A004 TCGA-AA-A00A 
          NA           30           NA           NA          424          548 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
         578          913         1035          548          548          517 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
         122          822          822           30          517          456 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
         669          638          457           30          396          365 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
         365          396         1158           31         1065           31 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A022 TCGA-AA-A024 
        1005         1065          791          638           NA         1188 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
        1580         1215           61          153           28         1246 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
        1215          548         1245          496           29          482 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3574 TCGA-AG-3575 
         323          412          387          316           NA           NA 
TCGA-AG-3578 TCGA-AG-3580 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3584 
          NA           NA           31           31           61           NA 
TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3593 TCGA-AG-3594 TCGA-AG-3598 TCGA-AG-3599 
          NA           31           NA           NA           NA           30 
TCGA-AG-3600 TCGA-AG-3601 TCGA-AG-3602 TCGA-AG-3605 TCGA-AG-3608 TCGA-AG-3609 
          NA           NA           NA           NA           NA           NA 
TCGA-AG-3611 TCGA-AG-3612 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3881 
          NA           NA           31           29           30           NA 
TCGA-AG-3882 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3890 TCGA-AG-3892 TCGA-AG-3893 
          NA           NA           28           NA           31           30 
TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3898 TCGA-AG-3901 TCGA-AG-3902 TCGA-AG-3909 
          30           NA           NA           NA           NA           NA 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4005 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4015 
          31           31           NA           31           31           NA 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
         637          423          183          789          700          518 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
         484          396           31          365         2130         1946 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
         334         1519           59         1184         1884         1246 
TCGA-AG-A032 TCGA-AG-A036 
        1156         2192 
Variable 1:'AGE':	nDistinctValues=49,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=13,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=61,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=9,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=60,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'HISTOLOGICAL.TYPE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'PATHOLOGY.T':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGY.N':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'PATHOLOGICSPREAD(M)':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 15:'NEOADJUVANT.THERAPY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'BATCH.NUMBER':	nDistinctValues=12,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                     "PRIMARY.SITE.OF.DISEASE"
[3] "GENDER"                  "HISTOLOGICAL.TYPE"      
[5] "PATHOLOGY.T"             "PATHOLOGY.N"            
[7] "PATHOLOGICSPREAD(M)"     "NEOADJUVANT.THERAPY"    
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "5"          
[1] "PATHOLOGY.N" "6"          
Output Data has 224 columns, 1 survival variables, and 8 non-survival variables.
AGE, nv=49, binary=FALSE, numeric=TRUE
PRIMARY.SITE.OF.DISEASE, nv=2, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=4, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
  9  47 150  17 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
  9  47 150  17 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
 T1  T2  T3  T4 
  9  47 150  17 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
  9  47 150  17 
PATHOLOGY.N, nv=3, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2 
134  44  46 
[1] "table(vv)"
vv
 N0  N1  N2 
134  44  46 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
 N0  N1  N2 
134  44  46 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


 N0  N1  N2 
134  44  46 
PATHOLOGICSPREAD(M), nv=3, binary=FALSE, numeric=FALSE
NEOADJUVANT.THERAPY, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = APC MUTATION ANALYSIS
D1V1, survival
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
  "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
  "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
  "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
[1] "hr=" "2"  
D1V2, continuous
D1V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  APC MUTATED    102   56
  APC WILD-TYPE   52   12
        clus
vv       APC MUTATED APC WILD-TYPE
  COLON          102            52
  RECTUM          56            12
D1V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  APC MUTATED     90   70
  APC WILD-TYPE   27   37
        clus
vv       APC MUTATED APC WILD-TYPE
  FEMALE          70            37
  MALE            90            27
D1V5, multiclass
                                clus
vv                               APC MUTATED APC WILD-TYPE
  COLON ADENOCARCINOMA                    86            42
  COLON MUCINOUS ADENOCARCINOMA           15             9
  RECTAL ADENOCARCINOMA                   47            10
  RECTAL MUCINOUS ADENOCARCINOMA           6             2
D1V6, multiclass
    clus
vv   APC MUTATED APC WILD-TYPE
  T1           7             2
  T2          35            12
  T3         105            45
  T4          13             4
D1V7, multiclass
    clus
vv   APC MUTATED APC WILD-TYPE
  N0          97            37
  N1          31            13
  N2          32            14
D1V8, multiclass
     clus
vv    APC MUTATED APC WILD-TYPE
  M0          132            57
  M1           24             7
  M1A           1             0
D1V9, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  APC MUTATED    156    4
  APC WILD-TYPE   60    4
     clus
vv    APC MUTATED APC WILD-TYPE
  NO            4             4
  YES         156            60

Clustering(2) Variable = FBXW7 MUTATION ANALYSIS
D2V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "FBXW7 MUTATED"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED"   "FBXW7 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "FBXW7 MUTATED"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED"   "FBXW7 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "FBXW7 MUTATED"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED"   "FBXW7 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
[1] "hr=" "1.3"
D2V2, continuous
D2V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FBXW7 MUTATED     29    9
  FBXW7 WILD-TYPE  125   59
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  COLON             29             125
  RECTUM             9              59
D2V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FBXW7 MUTATED     17   21
  FBXW7 WILD-TYPE  100   86
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  FEMALE            21              86
  MALE              17             100
D2V5, multiclass
                                clus
vv                               FBXW7 MUTATED FBXW7 WILD-TYPE
  COLON ADENOCARCINOMA                      18             110
  COLON MUCINOUS ADENOCARCINOMA             10              14
  RECTAL ADENOCARCINOMA                      7              50
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D2V6, multiclass
    clus
vv   FBXW7 MUTATED FBXW7 WILD-TYPE
  T1             1               8
  T2             3              44
  T3            31             119
  T4             2              15
D2V7, multiclass
    clus
vv   FBXW7 MUTATED FBXW7 WILD-TYPE
  N0            23             111
  N1             6              38
  N2             9              37
D2V8, multiclass
     clus
vv    FBXW7 MUTATED FBXW7 WILD-TYPE
  M0             38             151
  M1              0              31
  M1A             0               1
D2V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FBXW7 MUTATED     35    3
  FBXW7 WILD-TYPE  181    5
     clus
vv    FBXW7 MUTATED FBXW7 WILD-TYPE
  NO              3               5
  YES            35             181

Clustering(3) Variable = NRAS MUTATION ANALYSIS
D3V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
[1] "hr=" "2.8"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRAS MUTATED     15    5
  NRAS WILD-TYPE  139   63
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  COLON            15            139
  RECTUM            5             63
D3V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRAS MUTATED     15    5
  NRAS WILD-TYPE  102  102
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  FEMALE            5            102
  MALE             15            102
D3V5, multiclass
                                clus
vv                               NRAS MUTATED NRAS WILD-TYPE
  COLON ADENOCARCINOMA                     13            115
  COLON MUCINOUS ADENOCARCINOMA             2             22
  RECTAL ADENOCARCINOMA                     5             52
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D3V6, multiclass
    clus
vv   NRAS MUTATED NRAS WILD-TYPE
  T1            2              7
  T2            5             42
  T3           11            139
  T4            2             15
D3V7, multiclass
    clus
vv   NRAS MUTATED NRAS WILD-TYPE
  N0           11            123
  N1            8             36
  N2            1             45
D3V8, multiclass
     clus
vv    NRAS MUTATED NRAS WILD-TYPE
  M0            15            174
  M1             4             27
  M1A            0              1
D3V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRAS MUTATED     19    1
  NRAS WILD-TYPE  197    7
     clus
vv    NRAS MUTATED NRAS WILD-TYPE
  NO             1              7
  YES           19            197

Clustering(4) Variable = SMAD4 MUTATION ANALYSIS
D4V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
[1] "hr=" "1.3"
D4V2, continuous
D4V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD4 MUTATED     18    8
  SMAD4 WILD-TYPE  136   60
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  COLON             18             136
  RECTUM             8              60
D4V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD4 MUTATED     13   13
  SMAD4 WILD-TYPE  104   94
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  FEMALE            13              94
  MALE              13             104
D4V5, multiclass
                                clus
vv                               SMAD4 MUTATED SMAD4 WILD-TYPE
  COLON ADENOCARCINOMA                      12             116
  COLON MUCINOUS ADENOCARCINOMA              5              19
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             4               4
D4V6, multiclass
    clus
vv   SMAD4 MUTATED SMAD4 WILD-TYPE
  T1             0               9
  T2             5              42
  T3            19             131
  T4             1              16
D4V7, multiclass
    clus
vv   SMAD4 MUTATED SMAD4 WILD-TYPE
  N0            16             118
  N1             5              39
  N2             5              41
D4V8, multiclass
     clus
vv    SMAD4 MUTATED SMAD4 WILD-TYPE
  M0             21             168
  M1              4              27
  M1A             0               1
D4V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD4 MUTATED     24    2
  SMAD4 WILD-TYPE  192    6
     clus
vv    SMAD4 MUTATED SMAD4 WILD-TYPE
  NO              2               6
  YES            24             192

Clustering(5) Variable = FAM123B MUTATION ANALYSIS
D5V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "FAM123B MUTATED" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "FAM123B MUTATED" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "FAM123B MUTATED" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
[1] "hr=" "1.4"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM123B MUTATED     19    6
  FAM123B WILD-TYPE  135   62
        clus
vv       FAM123B MUTATED FAM123B WILD-TYPE
  COLON               19               135
  RECTUM               6                62
D5V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM123B MUTATED     13   12
  FAM123B WILD-TYPE  104   95
        clus
vv       FAM123B MUTATED FAM123B WILD-TYPE
  FEMALE              12                95
  MALE                13               104
D5V5, multiclass
                                clus
vv                               FAM123B MUTATED FAM123B WILD-TYPE
  COLON ADENOCARCINOMA                        14               114
  COLON MUCINOUS ADENOCARCINOMA                4                20
  RECTAL ADENOCARCINOMA                        6                51
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D5V6, multiclass
    clus
vv   FAM123B MUTATED FAM123B WILD-TYPE
  T1               1                 8
  T2               6                41
  T3              15               135
  T4               3                14
D5V7, multiclass
    clus
vv   FAM123B MUTATED FAM123B WILD-TYPE
  N0              17               117
  N1               2                42
  N2               6                40
D5V8, multiclass
     clus
vv    FAM123B MUTATED FAM123B WILD-TYPE
  M0               20               169
  M1                4                27
  M1A               0                 1
D5V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM123B MUTATED     25    0
  FAM123B WILD-TYPE  191    8
     clus
vv    FAM123B MUTATED FAM123B WILD-TYPE
  NO                0                 8
  YES              25               191

Clustering(6) Variable = BRAF MUTATION ANALYSIS
D6V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
[1] "hr=" "1.1"
D6V2, continuous
D6V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED     20    2
  BRAF WILD-TYPE  134   66
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  COLON            20            134
  RECTUM            2             66
D6V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED      7   15
  BRAF WILD-TYPE  110   92
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  FEMALE           15             92
  MALE              7            110
D6V5, multiclass
                                clus
vv                               BRAF MUTATED BRAF WILD-TYPE
  COLON ADENOCARCINOMA                      9            119
  COLON MUCINOUS ADENOCARCINOMA            11             13
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            1              7
D6V6, multiclass
    clus
vv   BRAF MUTATED BRAF WILD-TYPE
  T1            1              8
  T2            4             43
  T3           12            138
  T4            4             13
D6V7, multiclass
    clus
vv   BRAF MUTATED BRAF WILD-TYPE
  N0           13            121
  N1            5             39
  N2            4             42
D6V8, multiclass
     clus
vv    BRAF MUTATED BRAF WILD-TYPE
  M0            21            168
  M1             1             30
  M1A            0              1
D6V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED     21    1
  BRAF WILD-TYPE  195    7
     clus
vv    BRAF MUTATED BRAF WILD-TYPE
  NO             1              7
  YES           21            195

Clustering(7) Variable = GGT1 MUTATION ANALYSIS
D7V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "GGT1 MUTATED" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "GGT1 MUTATED" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "GGT1 MUTATED" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
[1] "Remove cluster labels:" "GGT1 MUTATED"          
clus
  GGT1 MUTATED GGT1 WILD-TYPE 
             1            119 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024     TCGA-AA-A029 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02O 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F     TCGA-AA-A03J 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689     TCGA-AF-2691 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
D7V2, continuous
D7V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GGT1 MUTATED      3    0
  GGT1 WILD-TYPE  151   68
        clus
vv       GGT1 MUTATED GGT1 WILD-TYPE
  COLON             3            151
  RECTUM            0             68
D7V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GGT1 MUTATED      1    2
  GGT1 WILD-TYPE  116  105
        clus
vv       GGT1 MUTATED GGT1 WILD-TYPE
  FEMALE            2            105
  MALE              1            116
D7V5, multiclass
[1] "Remove cluster labels:" "GGT1 MUTATED"          
clus
  GGT1 MUTATED GGT1 WILD-TYPE 
             2            215 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3695 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3818     TCGA-AA-3819 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3846     TCGA-AA-3848 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852     TCGA-AA-3854 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858     TCGA-AA-3860 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3870     TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3930     TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3949     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3986     TCGA-AA-3989 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A022     TCGA-AA-A024 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AF-2689     TCGA-AF-2691 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3587     TCGA-AG-3593 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3600     TCGA-AG-3601 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3887 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3902 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4005 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A002 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
D7V6, multiclass
    clus
vv   GGT1 MUTATED GGT1 WILD-TYPE
  T1            0              9
  T2            1             46
  T3            2            148
  T4            0             17
D7V7, multiclass
    clus
vv   GGT1 MUTATED GGT1 WILD-TYPE
  N0            3            131
  N1            0             44
  N2            0             46
D7V8, multiclass
     clus
vv    GGT1 MUTATED GGT1 WILD-TYPE
  M0             3            186
  M1             0             31
  M1A            0              1
D7V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GGT1 MUTATED      3    0
  GGT1 WILD-TYPE  213    8
     clus
vv    GGT1 MUTATED GGT1 WILD-TYPE
  NO             0              8
  YES            3            213

Clustering(8) Variable = KRAS MUTATION ANALYSIS
D8V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
[1] "hr=" "4"  
D8V2, continuous
D8V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED     58   37
  KRAS WILD-TYPE   96   31
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  COLON            58             96
  RECTUM           37             31
D8V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED     52   44
  KRAS WILD-TYPE   65   63
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  FEMALE           44             63
  MALE             52             65
D8V5, multiclass
                                clus
vv                               KRAS MUTATED KRAS WILD-TYPE
  COLON ADENOCARCINOMA                     46             82
  COLON MUCINOUS ADENOCARCINOMA            10             14
  RECTAL ADENOCARCINOMA                    29             28
  RECTAL MUCINOUS ADENOCARCINOMA            6              2
D8V6, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  T1            6              3
  T2           21             26
  T3           64             86
  T4            5             12
D8V7, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  N0           63             71
  N1           16             28
  N2           17             29
D8V8, multiclass
     clus
vv    KRAS MUTATED KRAS WILD-TYPE
  M0            83            106
  M1            10             21
  M1A            1              0
D8V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED     95    1
  KRAS WILD-TYPE  121    7
     clus
vv    KRAS MUTATED KRAS WILD-TYPE
  NO             1              7
  YES           95            121

Clustering(9) Variable = OSTN MUTATION ANALYSIS
D9V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"OSTN WILD-TYPE"   "OSTN MUTATED" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"OSTN WILD-TYPE"   "OSTN MUTATED" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "OSTN MUTATED" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"OSTN WILD-TYPE"   "OSTN MUTATED" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"OSTN WILD-TYPE"   "OSTN MUTATED" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "OSTN MUTATED" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"OSTN WILD-TYPE"   "OSTN MUTATED" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"OSTN WILD-TYPE"   "OSTN MUTATED" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "OSTN MUTATED" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" "OSTN WILD-TYPE" 
[1] "hr=" "3.7"
D9V2, continuous
D9V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  OSTN MUTATED      2    1
  OSTN WILD-TYPE  152   67
        clus
vv       OSTN MUTATED OSTN WILD-TYPE
  COLON             2            152
  RECTUM            1             67
D9V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  OSTN MUTATED      2    1
  OSTN WILD-TYPE  115  106
        clus
vv       OSTN MUTATED OSTN WILD-TYPE
  FEMALE            1            106
  MALE              2            115
D9V5, multiclass
                                clus
vv                               OSTN MUTATED OSTN WILD-TYPE
  COLON ADENOCARCINOMA                      1            127
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D9V6, multiclass
    clus
vv   OSTN MUTATED OSTN WILD-TYPE
  T1            0              9
  T2            1             46
  T3            1            149
  T4            1             16
D9V7, multiclass
    clus
vv   OSTN MUTATED OSTN WILD-TYPE
  N0            3            131
  N1            0             44
  N2            0             46
D9V8, multiclass
     clus
vv    OSTN MUTATED OSTN WILD-TYPE
  M0             3            186
  M1             0             31
  M1A            0              1
D9V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  OSTN MUTATED      3    0
  OSTN WILD-TYPE  213    8
     clus
vv    OSTN MUTATED OSTN WILD-TYPE
  NO             0              8
  YES            3            213

Clustering(10) Variable = PIK3CA MUTATION ANALYSIS
D10V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
[1] "hr=" "1.2"
D10V2, continuous
D10V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED     26    7
  PIK3CA WILD-TYPE  128   61
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  COLON              26              128
  RECTUM              7               61
D10V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED     18   15
  PIK3CA WILD-TYPE   99   92
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  FEMALE             15               92
  MALE               18               99
D10V5, multiclass
                                clus
vv                               PIK3CA MUTATED PIK3CA WILD-TYPE
  COLON ADENOCARCINOMA                       19              109
  COLON MUCINOUS ADENOCARCINOMA               7               17
  RECTAL ADENOCARCINOMA                       4               53
  RECTAL MUCINOUS ADENOCARCINOMA              3                5
D10V6, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  T1              1                8
  T2              8               39
  T3             21              129
  T4              3               14
D10V7, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  N0             27              107
  N1              3               41
  N2              3               43
D10V8, multiclass
     clus
vv    PIK3CA MUTATED PIK3CA WILD-TYPE
  M0              31              158
  M1               1               30
  M1A              0                1
D10V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED     33    0
  PIK3CA WILD-TYPE  183    8
     clus
vv    PIK3CA MUTATED PIK3CA WILD-TYPE
  NO               0                8
  YES             33              183

Clustering(11) Variable = TP53 MUTATION ANALYSIS
D11V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
[1] "hr=" "1.4"
D11V2, continuous
D11V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     74   45
  TP53 WILD-TYPE   80   23
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  COLON            74             80
  RECTUM           45             23
D11V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     67   53
  TP53 WILD-TYPE   50   54
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  FEMALE           53             54
  MALE             67             50
D11V5, multiclass
                                clus
vv                               TP53 MUTATED TP53 WILD-TYPE
  COLON ADENOCARCINOMA                     68             60
  COLON MUCINOUS ADENOCARCINOMA             5             19
  RECTAL ADENOCARCINOMA                    41             16
  RECTAL MUCINOUS ADENOCARCINOMA            4              4
D11V6, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  T1            4              5
  T2           25             22
  T3           82             68
  T4            8              9
D11V7, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  N0           66             68
  N1           26             18
  N2           28             18
D11V8, multiclass
     clus
vv    TP53 MUTATED TP53 WILD-TYPE
  M0            99             90
  M1            17             14
  M1A            1              0
D11V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED    113    7
  TP53 WILD-TYPE  103    1
     clus
vv    TP53 MUTATED TP53 WILD-TYPE
  NO             7              1
  YES          113            103

Clustering(12) Variable = SMAD2 MUTATION ANALYSIS
D12V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
[1] "hr=" "1.1"
D12V2, continuous
D12V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD2 MUTATED     10    5
  SMAD2 WILD-TYPE  144   63
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  COLON             10             144
  RECTUM             5              63
D12V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD2 MUTATED     10    5
  SMAD2 WILD-TYPE  107  102
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  FEMALE             5             102
  MALE              10             107
D12V5, multiclass
                                clus
vv                               SMAD2 MUTATED SMAD2 WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      5              52
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D12V6, multiclass
    clus
vv   SMAD2 MUTATED SMAD2 WILD-TYPE
  T1             0               9
  T2             5              42
  T3             8             142
  T4             2              15
D12V7, multiclass
    clus
vv   SMAD2 MUTATED SMAD2 WILD-TYPE
  N0            12             122
  N1             2              42
  N2             1              45
D12V8, multiclass
     clus
vv    SMAD2 MUTATED SMAD2 WILD-TYPE
  M0             12             177
  M1              2              29
  M1A             0               1
D12V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD2 MUTATED     15    0
  SMAD2 WILD-TYPE  201    8
     clus
vv    SMAD2 MUTATED SMAD2 WILD-TYPE
  NO              0               8
  YES            15             201

Clustering(13) Variable = LRP1B MUTATION ANALYSIS
D13V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
[1] "hr=" "1.2"
D13V2, continuous
D13V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRP1B MUTATED     29    9
  LRP1B WILD-TYPE  125   59
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  COLON             29             125
  RECTUM             9              59
D13V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRP1B MUTATED     17   22
  LRP1B WILD-TYPE  100   85
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  FEMALE            22              85
  MALE              17             100
D13V5, multiclass
                                clus
vv                               LRP1B MUTATED LRP1B WILD-TYPE
  COLON ADENOCARCINOMA                      18             110
  COLON MUCINOUS ADENOCARCINOMA             10              14
  RECTAL ADENOCARCINOMA                      9              48
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D13V6, multiclass
    clus
vv   LRP1B MUTATED LRP1B WILD-TYPE
  T1             2               7
  T2             7              40
  T3            25             125
  T4             5              12
D13V7, multiclass
    clus
vv   LRP1B MUTATED LRP1B WILD-TYPE
  N0            25             109
  N1             6              38
  N2             8              38
D13V8, multiclass
     clus
vv    LRP1B MUTATED LRP1B WILD-TYPE
  M0             33             156
  M1              4              27
  M1A             0               1
D13V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRP1B MUTATED     39    0
  LRP1B WILD-TYPE  177    8
     clus
vv    LRP1B MUTATED LRP1B WILD-TYPE
  NO              0               8
  YES            39             177

Clustering(14) Variable = TCF7L2 MUTATION ANALYSIS
D14V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" 
[1] "hr="     "7.7e+07"
D14V2, continuous
D14V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TCF7L2 MUTATED     11    6
  TCF7L2 WILD-TYPE  143   62
        clus
vv       TCF7L2 MUTATED TCF7L2 WILD-TYPE
  COLON              11              143
  RECTUM              6               62
D14V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TCF7L2 MUTATED      8   10
  TCF7L2 WILD-TYPE  109   97
        clus
vv       TCF7L2 MUTATED TCF7L2 WILD-TYPE
  FEMALE             10               97
  MALE                8              109
D14V5, multiclass
                                clus
vv                               TCF7L2 MUTATED TCF7L2 WILD-TYPE
  COLON ADENOCARCINOMA                       11              117
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       6               51
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D14V6, multiclass
    clus
vv   TCF7L2 MUTATED TCF7L2 WILD-TYPE
  T1              0                9
  T2              5               42
  T3             10              140
  T4              3               14
D14V7, multiclass
    clus
vv   TCF7L2 MUTATED TCF7L2 WILD-TYPE
  N0             11              123
  N1              4               40
  N2              3               43
D14V8, multiclass
     clus
vv    TCF7L2 MUTATED TCF7L2 WILD-TYPE
  M0              14              175
  M1               3               28
  M1A              0                1
D14V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TCF7L2 MUTATED     18    0
  TCF7L2 WILD-TYPE  198    8
     clus
vv    TCF7L2 MUTATED TCF7L2 WILD-TYPE
  NO               0                8
  YES             18              198

Clustering(15) Variable = FAT4 MUTATION ANALYSIS
D15V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED"   "FAT4 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"FAT4 WILD-TYPE"   "FAT4 MUTATED"   "FAT4 MUTATED" "FAT4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "FAT4 MUTATED"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
  "FAT4 MUTATED"   "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED"   "FAT4 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"FAT4 WILD-TYPE"   "FAT4 MUTATED"   "FAT4 MUTATED" "FAT4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "FAT4 MUTATED"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
  "FAT4 MUTATED"   "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED"   "FAT4 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"FAT4 WILD-TYPE"   "FAT4 MUTATED"   "FAT4 MUTATED" "FAT4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "FAT4 MUTATED"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
  "FAT4 MUTATED"   "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
[1] "hr=" "1.8"
D15V2, continuous
D15V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FAT4 MUTATED     30   10
  FAT4 WILD-TYPE  124   58
        clus
vv       FAT4 MUTATED FAT4 WILD-TYPE
  COLON            30            124
  RECTUM           10             58
D15V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FAT4 MUTATED     20   20
  FAT4 WILD-TYPE   97   87
        clus
vv       FAT4 MUTATED FAT4 WILD-TYPE
  FEMALE           20             87
  MALE             20             97
D15V5, multiclass
                                clus
vv                               FAT4 MUTATED FAT4 WILD-TYPE
  COLON ADENOCARCINOMA                     22            106
  COLON MUCINOUS ADENOCARCINOMA             7             17
  RECTAL ADENOCARCINOMA                     9             48
  RECTAL MUCINOUS ADENOCARCINOMA            1              7
D15V6, multiclass
    clus
vv   FAT4 MUTATED FAT4 WILD-TYPE
  T1            2              7
  T2           10             37
  T3           23            127
  T4            4             13
D15V7, multiclass
    clus
vv   FAT4 MUTATED FAT4 WILD-TYPE
  N0           28            106
  N1            6             38
  N2            6             40
D15V8, multiclass
     clus
vv    FAT4 MUTATED FAT4 WILD-TYPE
  M0            38            151
  M1             1             30
  M1A            0              1
D15V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FAT4 MUTATED     39    1
  FAT4 WILD-TYPE  177    7
     clus
vv    FAT4 MUTATED FAT4 WILD-TYPE
  NO             1              7
  YES           39            177

Clustering(16) Variable = TTN MUTATION ANALYSIS
D16V1, survival
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
  "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
  "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
  "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
[1] "hr=" "1.2"
D16V2, continuous
D16V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  TTN MUTATED     69   16
  TTN WILD-TYPE   85   52
        clus
vv       TTN MUTATED TTN WILD-TYPE
  COLON           69            85
  RECTUM          16            52
D16V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  TTN MUTATED     41   45
  TTN WILD-TYPE   76   62
        clus
vv       TTN MUTATED TTN WILD-TYPE
  FEMALE          45            62
  MALE            41            76
D16V5, multiclass
                                clus
vv                               TTN MUTATED TTN WILD-TYPE
  COLON ADENOCARCINOMA                    52            76
  COLON MUCINOUS ADENOCARCINOMA           16             8
  RECTAL ADENOCARCINOMA                   14            43
  RECTAL MUCINOUS ADENOCARCINOMA           2             6
D16V6, multiclass
    clus
vv   TTN MUTATED TTN WILD-TYPE
  T1           4             5
  T2          21            26
  T3          50           100
  T4          10             7
D16V7, multiclass
    clus
vv   TTN MUTATED TTN WILD-TYPE
  N0          58            76
  N1          17            27
  N2          11            35
D16V8, multiclass
     clus
vv    TTN MUTATED TTN WILD-TYPE
  M0           74           115
  M1            8            23
  M1A           1             0
D16V9, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  TTN MUTATED     84    2
  TTN WILD-TYPE  132    6
     clus
vv    TTN MUTATED TTN WILD-TYPE
  NO            2             6
  YES          84           132

Clustering(17) Variable = DMD MUTATION ANALYSIS
D17V1, survival
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "DMD MUTATED"   "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
  "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "DMD MUTATED"   "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
  "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "DMD MUTATED"   "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
  "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
[1] "hr=" "1.7"
D17V2, continuous
D17V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  DMD MUTATED     27    6
  DMD WILD-TYPE  127   62
        clus
vv       DMD MUTATED DMD WILD-TYPE
  COLON           27           127
  RECTUM           6            62
D17V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  DMD MUTATED     13   20
  DMD WILD-TYPE  104   87
        clus
vv       DMD MUTATED DMD WILD-TYPE
  FEMALE          20            87
  MALE            13           104
D17V5, multiclass
                                clus
vv                               DMD MUTATED DMD WILD-TYPE
  COLON ADENOCARCINOMA                    18           110
  COLON MUCINOUS ADENOCARCINOMA            9            15
  RECTAL ADENOCARCINOMA                    6            51
  RECTAL MUCINOUS ADENOCARCINOMA           0             8
D17V6, multiclass
    clus
vv   DMD MUTATED DMD WILD-TYPE
  T1           1             8
  T2           4            43
  T3          23           127
  T4           4            13
D17V7, multiclass
    clus
vv   DMD MUTATED DMD WILD-TYPE
  N0          17           117
  N1          11            33
  N2           5            41
D17V8, multiclass
     clus
vv    DMD MUTATED DMD WILD-TYPE
  M0           30           159
  M1            2            29
  M1A           0             1
D17V9, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  DMD MUTATED     31    2
  DMD WILD-TYPE  185    6
     clus
vv    DMD MUTATED DMD WILD-TYPE
  NO            2             6
  YES          31           185

Clustering(18) Variable = ACVR1B MUTATION ANALYSIS
D18V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
  "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
  "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
  "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
[1] "hr=" "1.5"
D18V2, continuous
D18V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACVR1B MUTATED     13    1
  ACVR1B WILD-TYPE  141   67
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  COLON              13              141
  RECTUM              1               67
D18V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACVR1B MUTATED      7    7
  ACVR1B WILD-TYPE  110  100
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  FEMALE              7              100
  MALE                7              110
D18V5, multiclass
                                clus
vv                               ACVR1B MUTATED ACVR1B WILD-TYPE
  COLON ADENOCARCINOMA                        8              120
  COLON MUCINOUS ADENOCARCINOMA               5               19
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D18V6, multiclass
    clus
vv   ACVR1B MUTATED ACVR1B WILD-TYPE
  T1              1                8
  T2              0               47
  T3             10              140
  T4              3               14
D18V7, multiclass
    clus
vv   ACVR1B MUTATED ACVR1B WILD-TYPE
  N0              8              126
  N1              3               41
  N2              3               43
D18V8, multiclass
     clus
vv    ACVR1B MUTATED ACVR1B WILD-TYPE
  M0              13              176
  M1               1               30
  M1A              0                1
D18V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACVR1B MUTATED     13    1
  ACVR1B WILD-TYPE  203    7
     clus
vv    ACVR1B MUTATED ACVR1B WILD-TYPE
  NO               1                7
  YES             13              203

Clustering(19) Variable = ARID1A MUTATION ANALYSIS
D19V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "ARID1A MUTATED" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ARID1A MUTATED"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "ARID1A MUTATED" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ARID1A MUTATED"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "ARID1A MUTATED" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ARID1A MUTATED"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
[1] "hr="     "8.4e+07"
D19V2, continuous
D19V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARID1A MUTATED     16    5
  ARID1A WILD-TYPE  138   63
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  COLON              16              138
  RECTUM              5               63
D19V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARID1A MUTATED      9   12
  ARID1A WILD-TYPE  108   95
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  FEMALE             12               95
  MALE                9              108
D19V5, multiclass
                                clus
vv                               ARID1A MUTATED ARID1A WILD-TYPE
  COLON ADENOCARCINOMA                       10              118
  COLON MUCINOUS ADENOCARCINOMA               6               18
  RECTAL ADENOCARCINOMA                       5               52
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D19V6, multiclass
    clus
vv   ARID1A MUTATED ARID1A WILD-TYPE
  T1              2                7
  T2              2               45
  T3             13              137
  T4              3               14
D19V7, multiclass
    clus
vv   ARID1A MUTATED ARID1A WILD-TYPE
  N0             17              117
  N1              1               43
  N2              3               43
D19V8, multiclass
     clus
vv    ARID1A MUTATED ARID1A WILD-TYPE
  M0              20              169
  M1               1               30
  M1A              0                1
D19V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARID1A MUTATED     20    1
  ARID1A WILD-TYPE  196    7
     clus
vv    ARID1A MUTATED ARID1A WILD-TYPE
  NO               1                7
  YES             20              196

Clustering(20) Variable = ATM MUTATION ANALYSIS
D20V1, survival
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
  "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
  "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
  "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
  "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
  "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
  "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
[1] "hr=" "1.3"
D20V2, continuous
D20V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  ATM MUTATED     21    4
  ATM WILD-TYPE  133   64
        clus
vv       ATM MUTATED ATM WILD-TYPE
  COLON           21           133
  RECTUM           4            64
D20V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  ATM MUTATED      9   16
  ATM WILD-TYPE  108   91
        clus
vv       ATM MUTATED ATM WILD-TYPE
  FEMALE          16            91
  MALE             9           108
D20V5, multiclass
                                clus
vv                               ATM MUTATED ATM WILD-TYPE
  COLON ADENOCARCINOMA                    16           112
  COLON MUCINOUS ADENOCARCINOMA            5            19
  RECTAL ADENOCARCINOMA                    4            53
  RECTAL MUCINOUS ADENOCARCINOMA           0             8
D20V6, multiclass
    clus
vv   ATM MUTATED ATM WILD-TYPE
  T1           1             8
  T2           5            42
  T3          16           134
  T4           3            14
D20V7, multiclass
    clus
vv   ATM MUTATED ATM WILD-TYPE
  N0          17           117
  N1           3            41
  N2           5            41
D20V8, multiclass
     clus
vv    ATM MUTATED ATM WILD-TYPE
  M0           23           166
  M1            1            30
  M1A           0             1
D20V9, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  ATM MUTATED     25    0
  ATM WILD-TYPE  191    8
     clus
vv    ATM MUTATED ATM WILD-TYPE
  NO            0             8
  YES          25           191

Clustering(21) Variable = WBSCR17 MUTATION ANALYSIS
D21V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D21V2, continuous
D21V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  WBSCR17 MUTATED     17    2
  WBSCR17 WILD-TYPE  137   66
        clus
vv       WBSCR17 MUTATED WBSCR17 WILD-TYPE
  COLON               17               137
  RECTUM               2                66
D21V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  WBSCR17 MUTATED     10    9
  WBSCR17 WILD-TYPE  107   98
        clus
vv       WBSCR17 MUTATED WBSCR17 WILD-TYPE
  FEMALE               9                98
  MALE                10               107
D21V5, multiclass
                                clus
vv                               WBSCR17 MUTATED WBSCR17 WILD-TYPE
  COLON ADENOCARCINOMA                        15               113
  COLON MUCINOUS ADENOCARCINOMA                2                22
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D21V6, multiclass
    clus
vv   WBSCR17 MUTATED WBSCR17 WILD-TYPE
  T1               0                 9
  T2               3                44
  T3              14               136
  T4               2                15
D21V7, multiclass
    clus
vv   WBSCR17 MUTATED WBSCR17 WILD-TYPE
  N0              13               121
  N1               3                41
  N2               3                43
D21V8, multiclass
     clus
vv    WBSCR17 MUTATED WBSCR17 WILD-TYPE
  M0               17               172
  M1                1                30
  M1A               0                 1
D21V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  WBSCR17 MUTATED     19    0
  WBSCR17 WILD-TYPE  197    8
     clus
vv    WBSCR17 MUTATED WBSCR17 WILD-TYPE
  NO                0                 8
  YES              19               197

Clustering(22) Variable = MAP2K4 MUTATION ANALYSIS
D22V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
  "MAP2K4 MUTATED"   "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
  "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MAP2K4 WILD-TYPE"   "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE"   "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
  "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
  "MAP2K4 MUTATED"   "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
  "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MAP2K4 WILD-TYPE"   "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE"   "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
  "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
  "MAP2K4 MUTATED"   "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
  "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MAP2K4 WILD-TYPE"   "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE"   "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
  "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
[1] "hr=" "4.6"
D22V2, continuous
D22V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAP2K4 MUTATED      9    2
  MAP2K4 WILD-TYPE  145   66
        clus
vv       MAP2K4 MUTATED MAP2K4 WILD-TYPE
  COLON               9              145
  RECTUM              2               66
D22V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAP2K4 MUTATED      5    6
  MAP2K4 WILD-TYPE  112  101
        clus
vv       MAP2K4 MUTATED MAP2K4 WILD-TYPE
  FEMALE              6              101
  MALE                5              112
D22V5, multiclass
                                clus
vv                               MAP2K4 MUTATED MAP2K4 WILD-TYPE
  COLON ADENOCARCINOMA                        6              122
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D22V6, multiclass
    clus
vv   MAP2K4 MUTATED MAP2K4 WILD-TYPE
  T1              0                9
  T2              1               46
  T3              8              142
  T4              2               15
D22V7, multiclass
    clus
vv   MAP2K4 MUTATED MAP2K4 WILD-TYPE
  N0              8              126
  N1              2               42
  N2              1               45
D22V8, multiclass
     clus
vv    MAP2K4 MUTATED MAP2K4 WILD-TYPE
  M0              11              178
  M1               0               31
  M1A              0                1
D22V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAP2K4 MUTATED     11    0
  MAP2K4 WILD-TYPE  205    8
     clus
vv    MAP2K4 MUTATED MAP2K4 WILD-TYPE
  NO               0                8
  YES             11              205

Clustering(23) Variable = PCDH9 MUTATION ANALYSIS
D23V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
[1] "hr=" "2.6"
D23V2, continuous
D23V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PCDH9 MUTATED     16    6
  PCDH9 WILD-TYPE  138   62
        clus
vv       PCDH9 MUTATED PCDH9 WILD-TYPE
  COLON             16             138
  RECTUM             6              62
D23V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PCDH9 MUTATED     15    7
  PCDH9 WILD-TYPE  102  100
        clus
vv       PCDH9 MUTATED PCDH9 WILD-TYPE
  FEMALE             7             100
  MALE              15             102
D23V5, multiclass
                                clus
vv                               PCDH9 MUTATED PCDH9 WILD-TYPE
  COLON ADENOCARCINOMA                      13             115
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      6              51
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D23V6, multiclass
    clus
vv   PCDH9 MUTATED PCDH9 WILD-TYPE
  T1             0               9
  T2             3              44
  T3            16             134
  T4             3              14
D23V7, multiclass
    clus
vv   PCDH9 MUTATED PCDH9 WILD-TYPE
  N0            15             119
  N1             3              41
  N2             4              42
D23V8, multiclass
     clus
vv    PCDH9 MUTATED PCDH9 WILD-TYPE
  M0             20             169
  M1              1              30
  M1A             0               1
D23V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PCDH9 MUTATED     22    0
  PCDH9 WILD-TYPE  194    8
     clus
vv    PCDH9 MUTATED PCDH9 WILD-TYPE
  NO              0               8
  YES            22             194

Clustering(24) Variable = ZC3H13 MUTATION ANALYSIS
D24V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "ZC3H13 MUTATED"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "ZC3H13 MUTATED"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "ZC3H13 MUTATED"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
[1] "hr=" "1.8"
D24V2, continuous
D24V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZC3H13 MUTATED     17    4
  ZC3H13 WILD-TYPE  137   64
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  COLON              17              137
  RECTUM              4               64
D24V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZC3H13 MUTATED     11   10
  ZC3H13 WILD-TYPE  106   97
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  FEMALE             10               97
  MALE               11              106
D24V5, multiclass
                                clus
vv                               ZC3H13 MUTATED ZC3H13 WILD-TYPE
  COLON ADENOCARCINOMA                       10              118
  COLON MUCINOUS ADENOCARCINOMA               6               18
  RECTAL ADENOCARCINOMA                       4               53
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D24V6, multiclass
    clus
vv   ZC3H13 MUTATED ZC3H13 WILD-TYPE
  T1              2                7
  T2              4               43
  T3             11              139
  T4              4               13
D24V7, multiclass
    clus
vv   ZC3H13 MUTATED ZC3H13 WILD-TYPE
  N0             15              119
  N1              3               41
  N2              3               43
D24V8, multiclass
     clus
vv    ZC3H13 MUTATED ZC3H13 WILD-TYPE
  M0              20              169
  M1               0               31
  M1A              0                1
D24V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZC3H13 MUTATED     20    1
  ZC3H13 WILD-TYPE  196    7
     clus
vv    ZC3H13 MUTATED ZC3H13 WILD-TYPE
  NO               1                7
  YES             20              196

Clustering(25) Variable = ACVR2A MUTATION ANALYSIS
D25V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
[1] "hr="     "7.5e+07"
D25V2, continuous
D25V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACVR2A MUTATED      8    1
  ACVR2A WILD-TYPE  146   67
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  COLON               8              146
  RECTUM              1               67
D25V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACVR2A MUTATED      2    7
  ACVR2A WILD-TYPE  115  100
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  FEMALE              7              100
  MALE                2              115
D25V5, multiclass
                                clus
vv                               ACVR2A MUTATED ACVR2A WILD-TYPE
  COLON ADENOCARCINOMA                        7              121
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D25V6, multiclass
    clus
vv   ACVR2A MUTATED ACVR2A WILD-TYPE
  T1              0                9
  T2              2               45
  T3              6              144
  T4              1               16
D25V7, multiclass
    clus
vv   ACVR2A MUTATED ACVR2A WILD-TYPE
  N0              7              127
  N1              2               42
  N2              0               46
D25V8, multiclass
     clus
vv    ACVR2A MUTATED ACVR2A WILD-TYPE
  M0               8              181
  M1               1               30
  M1A              0                1
D25V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACVR2A MUTATED      9    0
  ACVR2A WILD-TYPE  207    8
     clus
vv    ACVR2A MUTATED ACVR2A WILD-TYPE
  NO               0                8
  YES              9              207

Clustering(26) Variable = TNFRSF10C MUTATION ANALYSIS
D26V1, survival
         TCGA-A6-2670          TCGA-A6-2672          TCGA-A6-2674 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2676          TCGA-A6-2677          TCGA-A6-2678 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2683          TCGA-A6-3807          TCGA-A6-3808 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3518          TCGA-AA-3526 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3562          TCGA-AA-3666 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3685          TCGA-AA-3710 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3715          TCGA-AA-3811          TCGA-AA-3818 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3837          TCGA-AA-3842          TCGA-AA-3844 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE"   "TNFRSF10C MUTATED" 
         TCGA-AA-3846          TCGA-AA-3848          TCGA-AA-3854 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3877          TCGA-AA-3939          TCGA-AA-3941 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3947          TCGA-AA-3949          TCGA-AA-3952 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3966          TCGA-AA-3975          TCGA-AA-3977 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3986          TCGA-AA-A004          TCGA-AA-A00A 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00D          TCGA-AA-A00E          TCGA-AA-A00F 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00J          TCGA-AA-A00K          TCGA-AA-A00L 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00N          TCGA-AA-A00O          TCGA-AA-A00Q 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00R          TCGA-AA-A00U          TCGA-AA-A00W 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00Z          TCGA-AA-A010          TCGA-AA-A017 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01D          TCGA-AA-A01F          TCGA-AA-A01G 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01I          TCGA-AA-A01K          TCGA-AA-A01P 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01Q          TCGA-AA-A01R          TCGA-AA-A01S 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01T          TCGA-AA-A01V          TCGA-AA-A01X 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01Z          TCGA-AA-A024          TCGA-AA-A029 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02F          TCGA-AA-A02H          TCGA-AA-A02J 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02O          TCGA-AA-A02W          TCGA-AA-A02Y 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A03F          TCGA-AA-A03J          TCGA-AY-4070 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AY-4071          TCGA-AF-2689          TCGA-AF-2691 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AF-2692          TCGA-AF-3400          TCGA-AF-3913 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3581          TCGA-AG-3582          TCGA-AG-3583 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3587          TCGA-AG-3599          TCGA-AG-3726 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3727          TCGA-AG-3878          TCGA-AG-3887 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3892          TCGA-AG-3893          TCGA-AG-3894 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3999          TCGA-AG-4001          TCGA-AG-4007 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-4008          TCGA-AG-A002          TCGA-AG-A008 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A00C          TCGA-AG-A00H          TCGA-AG-A00Y 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A011          TCGA-AG-A014          TCGA-AG-A015 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A016          TCGA-AG-A01L          TCGA-AG-A01W 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A01Y          TCGA-AG-A020          TCGA-AG-A025 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A026          TCGA-AG-A02G          TCGA-AG-A02N 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A02X          TCGA-AG-A032          TCGA-AG-A036 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2670          TCGA-A6-2672          TCGA-A6-2674 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2676          TCGA-A6-2677          TCGA-A6-2678 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2683          TCGA-A6-3807          TCGA-A6-3808 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3518          TCGA-AA-3526 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3562          TCGA-AA-3666 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3685          TCGA-AA-3710 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3715          TCGA-AA-3811          TCGA-AA-3818 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3837          TCGA-AA-3842          TCGA-AA-3844 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE"   "TNFRSF10C MUTATED" 
         TCGA-AA-3846          TCGA-AA-3848          TCGA-AA-3854 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3877          TCGA-AA-3939          TCGA-AA-3941 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3947          TCGA-AA-3949          TCGA-AA-3952 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3966          TCGA-AA-3975          TCGA-AA-3977 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3986          TCGA-AA-A004          TCGA-AA-A00A 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00D          TCGA-AA-A00E          TCGA-AA-A00F 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00J          TCGA-AA-A00K          TCGA-AA-A00L 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00N          TCGA-AA-A00O          TCGA-AA-A00Q 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00R          TCGA-AA-A00U          TCGA-AA-A00W 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00Z          TCGA-AA-A010          TCGA-AA-A017 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01D          TCGA-AA-A01F          TCGA-AA-A01G 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01I          TCGA-AA-A01K          TCGA-AA-A01P 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01Q          TCGA-AA-A01R          TCGA-AA-A01S 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01T          TCGA-AA-A01V          TCGA-AA-A01X 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01Z          TCGA-AA-A024          TCGA-AA-A029 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02F          TCGA-AA-A02H          TCGA-AA-A02J 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02O          TCGA-AA-A02W          TCGA-AA-A02Y 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A03F          TCGA-AA-A03J          TCGA-AY-4070 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AY-4071          TCGA-AF-2689          TCGA-AF-2691 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AF-2692          TCGA-AF-3400          TCGA-AF-3913 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3581          TCGA-AG-3582          TCGA-AG-3583 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3587          TCGA-AG-3599          TCGA-AG-3726 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3727          TCGA-AG-3878          TCGA-AG-3887 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3892          TCGA-AG-3893          TCGA-AG-3894 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3999          TCGA-AG-4001          TCGA-AG-4007 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-4008          TCGA-AG-A002          TCGA-AG-A008 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A00C          TCGA-AG-A00H          TCGA-AG-A00Y 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A011          TCGA-AG-A014          TCGA-AG-A015 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A016          TCGA-AG-A01L          TCGA-AG-A01W 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A01Y          TCGA-AG-A020          TCGA-AG-A025 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A026          TCGA-AG-A02G          TCGA-AG-A02N 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A02X          TCGA-AG-A032          TCGA-AG-A036 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2670          TCGA-A6-2672          TCGA-A6-2674 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2676          TCGA-A6-2677          TCGA-A6-2678 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2683          TCGA-A6-3807          TCGA-A6-3808 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3518          TCGA-AA-3526 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3562          TCGA-AA-3666 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3685          TCGA-AA-3710 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3715          TCGA-AA-3811          TCGA-AA-3818 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3837          TCGA-AA-3842          TCGA-AA-3844 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE"   "TNFRSF10C MUTATED" 
         TCGA-AA-3846          TCGA-AA-3848          TCGA-AA-3854 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3877          TCGA-AA-3939          TCGA-AA-3941 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3947          TCGA-AA-3949          TCGA-AA-3952 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3966          TCGA-AA-3975          TCGA-AA-3977 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3986          TCGA-AA-A004          TCGA-AA-A00A 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00D          TCGA-AA-A00E          TCGA-AA-A00F 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00J          TCGA-AA-A00K          TCGA-AA-A00L 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00N          TCGA-AA-A00O          TCGA-AA-A00Q 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00R          TCGA-AA-A00U          TCGA-AA-A00W 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00Z          TCGA-AA-A010          TCGA-AA-A017 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01D          TCGA-AA-A01F          TCGA-AA-A01G 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01I          TCGA-AA-A01K          TCGA-AA-A01P 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01Q          TCGA-AA-A01R          TCGA-AA-A01S 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01T          TCGA-AA-A01V          TCGA-AA-A01X 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01Z          TCGA-AA-A024          TCGA-AA-A029 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02F          TCGA-AA-A02H          TCGA-AA-A02J 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02O          TCGA-AA-A02W          TCGA-AA-A02Y 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A03F          TCGA-AA-A03J          TCGA-AY-4070 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AY-4071          TCGA-AF-2689          TCGA-AF-2691 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AF-2692          TCGA-AF-3400          TCGA-AF-3913 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3581          TCGA-AG-3582          TCGA-AG-3583 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3587          TCGA-AG-3599          TCGA-AG-3726 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3727          TCGA-AG-3878          TCGA-AG-3887 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3892          TCGA-AG-3893          TCGA-AG-3894 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3999          TCGA-AG-4001          TCGA-AG-4007 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-4008          TCGA-AG-A002          TCGA-AG-A008 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A00C          TCGA-AG-A00H          TCGA-AG-A00Y 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A011          TCGA-AG-A014          TCGA-AG-A015 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A016          TCGA-AG-A01L          TCGA-AG-A01W 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A01Y          TCGA-AG-A020          TCGA-AG-A025 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A026          TCGA-AG-A02G          TCGA-AG-A02N 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A02X          TCGA-AG-A032          TCGA-AG-A036 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
[1] "Remove cluster labels:" "TNFRSF10C MUTATED"     
clus
  TNFRSF10C MUTATED TNFRSF10C WILD-TYPE 
                  1                 119 
         TCGA-A6-2670          TCGA-A6-2672          TCGA-A6-2674 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2676          TCGA-A6-2677          TCGA-A6-2678 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2683          TCGA-A6-3807          TCGA-A6-3808 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3518          TCGA-AA-3526 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3562          TCGA-AA-3666 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3685          TCGA-AA-3710 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3715          TCGA-AA-3811          TCGA-AA-3818 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3837          TCGA-AA-3842          TCGA-AA-3846 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3848          TCGA-AA-3854          TCGA-AA-3877 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3939          TCGA-AA-3941          TCGA-AA-3947 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3949          TCGA-AA-3952          TCGA-AA-3966 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3975          TCGA-AA-3977          TCGA-AA-3986 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A004          TCGA-AA-A00A          TCGA-AA-A00D 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00E          TCGA-AA-A00F          TCGA-AA-A00J 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00K          TCGA-AA-A00L          TCGA-AA-A00N 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00O          TCGA-AA-A00Q          TCGA-AA-A00R 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00U          TCGA-AA-A00W          TCGA-AA-A00Z 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A010          TCGA-AA-A017          TCGA-AA-A01D 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01F          TCGA-AA-A01G          TCGA-AA-A01I 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01K          TCGA-AA-A01P          TCGA-AA-A01Q 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01R          TCGA-AA-A01S          TCGA-AA-A01T 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01V          TCGA-AA-A01X          TCGA-AA-A01Z 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A024          TCGA-AA-A029          TCGA-AA-A02F 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02H          TCGA-AA-A02J          TCGA-AA-A02O 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02W          TCGA-AA-A02Y          TCGA-AA-A03F 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A03J          TCGA-AY-4070          TCGA-AY-4071 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AF-2689          TCGA-AF-2691          TCGA-AF-2692 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AF-3400          TCGA-AF-3913          TCGA-AG-3581 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3582          TCGA-AG-3583          TCGA-AG-3587 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3599          TCGA-AG-3726          TCGA-AG-3727 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3878          TCGA-AG-3887          TCGA-AG-3892 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3893          TCGA-AG-3894          TCGA-AG-3999 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-4001          TCGA-AG-4007          TCGA-AG-4008 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A002          TCGA-AG-A008          TCGA-AG-A00C 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A00H          TCGA-AG-A00Y          TCGA-AG-A011 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A014          TCGA-AG-A015          TCGA-AG-A016 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A01L          TCGA-AG-A01W          TCGA-AG-A01Y 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A020          TCGA-AG-A025          TCGA-AG-A026 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A02G          TCGA-AG-A02N          TCGA-AG-A02X 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A032          TCGA-AG-A036 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
D26V2, continuous
D26V3, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  TNFRSF10C MUTATED      6    0
  TNFRSF10C WILD-TYPE  148   68
        clus
vv       TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  COLON                  6                 148
  RECTUM                 0                  68
D26V4, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  TNFRSF10C MUTATED      4    2
  TNFRSF10C WILD-TYPE  113  105
        clus
vv       TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  FEMALE                 2                 105
  MALE                   4                 113
D26V5, multiclass
                                clus
vv                               TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  COLON ADENOCARCINOMA                           6                 122
  COLON MUCINOUS ADENOCARCINOMA                  0                  24
  RECTAL ADENOCARCINOMA                          0                  57
  RECTAL MUCINOUS ADENOCARCINOMA                 0                   8
D26V6, multiclass
    clus
vv   TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  T1                 0                   9
  T2                 2                  45
  T3                 2                 148
  T4                 2                  15
D26V7, multiclass
    clus
vv   TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  N0                 2                 132
  N1                 1                  43
  N2                 3                  43
D26V8, multiclass
     clus
vv    TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  M0                  3                 186
  M1                  3                  28
  M1A                 0                   1
D26V9, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  TNFRSF10C MUTATED      6    0
  TNFRSF10C WILD-TYPE  210    8
     clus
vv    TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  NO                  0                   8
  YES                 6                 210

Clustering(27) Variable = KIAA1804 MUTATION ANALYSIS
D27V1, survival
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
  "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
  "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
  "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED"   "KIAA1804 MUTATED" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
  "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
  "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
  "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED"   "KIAA1804 MUTATED" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
  "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
  "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
  "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED"   "KIAA1804 MUTATED" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
[1] "hr="     "7.4e+07"
D27V2, continuous
D27V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA1804 MUTATED      6    9
  KIAA1804 WILD-TYPE  148   59
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  COLON                 6                148
  RECTUM                9                 59
D27V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA1804 MUTATED      6    9
  KIAA1804 WILD-TYPE  111   98
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  FEMALE                9                 98
  MALE                  6                111
D27V5, multiclass
                                clus
vv                               KIAA1804 MUTATED KIAA1804 WILD-TYPE
  COLON ADENOCARCINOMA                          3                125
  COLON MUCINOUS ADENOCARCINOMA                 2                 22
  RECTAL ADENOCARCINOMA                         8                 49
  RECTAL MUCINOUS ADENOCARCINOMA                1                  7
D27V6, multiclass
    clus
vv   KIAA1804 MUTATED KIAA1804 WILD-TYPE
  T1                1                  8
  T2                2                 45
  T3               11                139
  T4                1                 16
D27V7, multiclass
    clus
vv   KIAA1804 MUTATED KIAA1804 WILD-TYPE
  N0               10                124
  N1                4                 40
  N2                1                 45
D27V8, multiclass
     clus
vv    KIAA1804 MUTATED KIAA1804 WILD-TYPE
  M0                13                176
  M1                 2                 29
  M1A                0                  1
D27V9, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA1804 MUTATED     15    0
  KIAA1804 WILD-TYPE  201    8
     clus
vv    KIAA1804 MUTATED KIAA1804 WILD-TYPE
  NO                 0                  8
  YES               15                201

Clustering(28) Variable = LIFR MUTATION ANALYSIS
D28V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "LIFR MUTATED" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "LIFR MUTATED" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "LIFR MUTATED" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
[1] "hr=" "3.9"
D28V2, continuous
D28V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  LIFR MUTATED     13    5
  LIFR WILD-TYPE  141   63
        clus
vv       LIFR MUTATED LIFR WILD-TYPE
  COLON            13            141
  RECTUM            5             63
D28V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  LIFR MUTATED     12    6
  LIFR WILD-TYPE  105  101
        clus
vv       LIFR MUTATED LIFR WILD-TYPE
  FEMALE            6            101
  MALE             12            105
D28V5, multiclass
                                clus
vv                               LIFR MUTATED LIFR WILD-TYPE
  COLON ADENOCARCINOMA                     10            118
  COLON MUCINOUS ADENOCARCINOMA             3             21
  RECTAL ADENOCARCINOMA                     5             52
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D28V6, multiclass
    clus
vv   LIFR MUTATED LIFR WILD-TYPE
  T1            1              8
  T2            4             43
  T3           10            140
  T4            3             14
D28V7, multiclass
    clus
vv   LIFR MUTATED LIFR WILD-TYPE
  N0           11            123
  N1            4             40
  N2            3             43
D28V8, multiclass
     clus
vv    LIFR MUTATED LIFR WILD-TYPE
  M0            14            175
  M1             2             29
  M1A            0              1
D28V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  LIFR MUTATED     18    0
  LIFR WILD-TYPE  198    8
     clus
vv    LIFR MUTATED LIFR WILD-TYPE
  NO             0              8
  YES           18            198

Clustering(29) Variable = KRTAP5-5 MUTATION ANALYSIS
D29V1, survival
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
[1] "Remove cluster labels:" "KRTAP5-5 MUTATED"      
clus
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
                 2                118 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3810 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3518         TCGA-AA-3526         TCGA-AA-3555 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3562         TCGA-AA-3666         TCGA-AA-3679 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3685         TCGA-AA-3710         TCGA-AA-3715 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3811         TCGA-AA-3818         TCGA-AA-3837 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3846 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3848         TCGA-AA-3854         TCGA-AA-3877 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3939         TCGA-AA-3941         TCGA-AA-3947 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3949         TCGA-AA-3952         TCGA-AA-3966 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3975         TCGA-AA-3977         TCGA-AA-3986 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01P         TCGA-AA-A01Q 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01R         TCGA-AA-A01S         TCGA-AA-A01T 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01V         TCGA-AA-A01X         TCGA-AA-A01Z 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A024         TCGA-AA-A029         TCGA-AA-A02F 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A02H         TCGA-AA-A02J         TCGA-AA-A02O 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AA-A02Y         TCGA-AA-A03F 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A03J         TCGA-AY-4070         TCGA-AY-4071 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AF-2689         TCGA-AF-2691         TCGA-AF-2692 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AF-3400         TCGA-AF-3913         TCGA-AG-3581 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3587 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3599         TCGA-AG-3726         TCGA-AG-3727 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3887         TCGA-AG-3892 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3894         TCGA-AG-3999 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-4001         TCGA-AG-4007         TCGA-AG-4008 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A011         TCGA-AG-A014 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A015         TCGA-AG-A016         TCGA-AG-A01L 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A01W         TCGA-AG-A01Y         TCGA-AG-A020 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A025         TCGA-AG-A026         TCGA-AG-A02G 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A02N         TCGA-AG-A02X         TCGA-AG-A032 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A036 
"KRTAP5-5 WILD-TYPE" 
D29V2, continuous
D29V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KRTAP5-5 MUTATED      2    2
  KRTAP5-5 WILD-TYPE  152   66
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  COLON                 2                152
  RECTUM                2                 66
D29V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KRTAP5-5 MUTATED      2    2
  KRTAP5-5 WILD-TYPE  115  105
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  FEMALE                2                105
  MALE                  2                115
D29V5, multiclass
                                clus
vv                               KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  COLON ADENOCARCINOMA                          1                127
  COLON MUCINOUS ADENOCARCINOMA                 1                 23
  RECTAL ADENOCARCINOMA                         2                 55
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
D29V6, multiclass
    clus
vv   KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  T1                0                  9
  T2                0                 47
  T3                3                147
  T4                0                 17
D29V7, multiclass
    clus
vv   KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  N0                4                130
  N1                0                 44
  N2                0                 46
D29V8, multiclass
     clus
vv    KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  M0                 4                185
  M1                 0                 31
  M1A                0                  1
D29V9, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KRTAP5-5 MUTATED      3    1
  KRTAP5-5 WILD-TYPE  213    7
     clus
vv    KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  NO                 1                  7
  YES                3                213

Clustering(30) Variable = SOX9 MUTATION ANALYSIS
D30V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "SOX9 MUTATED" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE"   "SOX9 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SOX9 WILD-TYPE"   "SOX9 MUTATED" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "SOX9 MUTATED" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE"   "SOX9 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SOX9 WILD-TYPE"   "SOX9 MUTATED" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "SOX9 MUTATED" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE"   "SOX9 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SOX9 WILD-TYPE"   "SOX9 MUTATED" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
[1] "hr=" "1.8"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SOX9 MUTATED      9    1
  SOX9 WILD-TYPE  145   67
        clus
vv       SOX9 MUTATED SOX9 WILD-TYPE
  COLON             9            145
  RECTUM            1             67
D30V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SOX9 MUTATED      4    6
  SOX9 WILD-TYPE  113  101
        clus
vv       SOX9 MUTATED SOX9 WILD-TYPE
  FEMALE            6            101
  MALE              4            113
D30V5, multiclass
                                clus
vv                               SOX9 MUTATED SOX9 WILD-TYPE
  COLON ADENOCARCINOMA                      8            120
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D30V6, multiclass
    clus
vv   SOX9 MUTATED SOX9 WILD-TYPE
  T1            1              8
  T2            0             47
  T3            9            141
  T4            0             17
D30V7, multiclass
    clus
vv   SOX9 MUTATED SOX9 WILD-TYPE
  N0            7            127
  N1            1             43
  N2            2             44
D30V8, multiclass
     clus
vv    SOX9 MUTATED SOX9 WILD-TYPE
  M0             9            180
  M1             1             30
  M1A            0              1
D30V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SOX9 MUTATED     10    0
  SOX9 WILD-TYPE  206    8
     clus
vv    SOX9 MUTATED SOX9 WILD-TYPE
  NO             0              8
  YES           10            206

Clustering(31) Variable = ATP10A MUTATION ANALYSIS
D31V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE"   "ATP10A MUTATED"   "ATP10A MUTATED" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "ATP10A MUTATED"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE"   "ATP10A MUTATED"   "ATP10A MUTATED" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "ATP10A MUTATED"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE"   "ATP10A MUTATED"   "ATP10A MUTATED" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "ATP10A MUTATED"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
[1] "hr=" "1.5"
D31V2, continuous
D31V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ATP10A MUTATED     13    6
  ATP10A WILD-TYPE  141   62
        clus
vv       ATP10A MUTATED ATP10A WILD-TYPE
  COLON              13              141
  RECTUM              6               62
D31V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ATP10A MUTATED      9   10
  ATP10A WILD-TYPE  108   97
        clus
vv       ATP10A MUTATED ATP10A WILD-TYPE
  FEMALE             10               97
  MALE                9              108
D31V5, multiclass
                                clus
vv                               ATP10A MUTATED ATP10A WILD-TYPE
  COLON ADENOCARCINOMA                        8              120
  COLON MUCINOUS ADENOCARCINOMA               5               19
  RECTAL ADENOCARCINOMA                       5               52
  RECTAL MUCINOUS ADENOCARCINOMA              1                7
D31V6, multiclass
    clus
vv   ATP10A MUTATED ATP10A WILD-TYPE
  T1              0                9
  T2              2               45
  T3             12              138
  T4              5               12
D31V7, multiclass
    clus
vv   ATP10A MUTATED ATP10A WILD-TYPE
  N0             15              119
  N1              2               42
  N2              2               44
D31V8, multiclass
     clus
vv    ATP10A MUTATED ATP10A WILD-TYPE
  M0              18              171
  M1               1               30
  M1A              0                1
D31V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ATP10A MUTATED     19    0
  ATP10A WILD-TYPE  197    8
     clus
vv    ATP10A MUTATED ATP10A WILD-TYPE
  NO               0                8
  YES             19              197

Clustering(32) Variable = TXNDC3 MUTATION ANALYSIS
D32V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D32V2, continuous
D32V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TXNDC3 MUTATED     10    1
  TXNDC3 WILD-TYPE  144   67
        clus
vv       TXNDC3 MUTATED TXNDC3 WILD-TYPE
  COLON              10              144
  RECTUM              1               67
D32V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TXNDC3 MUTATED      4    7
  TXNDC3 WILD-TYPE  113  100
        clus
vv       TXNDC3 MUTATED TXNDC3 WILD-TYPE
  FEMALE              7              100
  MALE                4              113
D32V5, multiclass
                                clus
vv                               TXNDC3 MUTATED TXNDC3 WILD-TYPE
  COLON ADENOCARCINOMA                        8              120
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D32V6, multiclass
    clus
vv   TXNDC3 MUTATED TXNDC3 WILD-TYPE
  T1              1                8
  T2              2               45
  T3              7              143
  T4              1               16
D32V7, multiclass
    clus
vv   TXNDC3 MUTATED TXNDC3 WILD-TYPE
  N0              8              126
  N1              1               43
  N2              2               44
D32V8, multiclass
     clus
vv    TXNDC3 MUTATED TXNDC3 WILD-TYPE
  M0              11              178
  M1               0               31
  M1A              0                1
D32V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TXNDC3 MUTATED     11    0
  TXNDC3 WILD-TYPE  205    8
     clus
vv    TXNDC3 MUTATED TXNDC3 WILD-TYPE
  NO               0                8
  YES             11              205

Clustering(33) Variable = RAB40C MUTATION ANALYSIS
D33V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE"   "RAB40C MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE"   "RAB40C MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE"   "RAB40C MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
[1] "Remove cluster labels:" "RAB40C MUTATED"        
clus
  RAB40C MUTATED RAB40C WILD-TYPE 
               1              119 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3952 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977       TCGA-AA-3986 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P       TCGA-AA-A01Q 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T       TCGA-AA-A01V 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024       TCGA-AA-A029 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02O 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F       TCGA-AA-A03J 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689       TCGA-AF-2691 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"RAB40C WILD-TYPE" "RAB40C WILD-TYPE" "RAB40C WILD-TYPE" 
D33V2, continuous
D33V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  RAB40C MUTATED      3    0
  RAB40C WILD-TYPE  151   68
        clus
vv       RAB40C MUTATED RAB40C WILD-TYPE
  COLON               3              151
  RECTUM              0               68
D33V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  RAB40C MUTATED      1    2
  RAB40C WILD-TYPE  116  105
        clus
vv       RAB40C MUTATED RAB40C WILD-TYPE
  FEMALE              2              105
  MALE                1              116
D33V5, multiclass
                                clus
vv                               RAB40C MUTATED RAB40C WILD-TYPE
  COLON ADENOCARCINOMA                        2              126
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       0               57
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D33V6, multiclass
    clus
vv   RAB40C MUTATED RAB40C WILD-TYPE
  T1              0                9
  T2              0               47
  T3              3              147
  T4              0               17
D33V7, multiclass
    clus
vv   RAB40C MUTATED RAB40C WILD-TYPE
  N0              1              133
  N1              1               43
  N2              1               45
D33V8, multiclass
     clus
vv    RAB40C MUTATED RAB40C WILD-TYPE
  M0               2              187
  M1               1               30
  M1A              0                1
D33V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  RAB40C MUTATED      3    0
  RAB40C WILD-TYPE  213    8
     clus
vv    RAB40C MUTATED RAB40C WILD-TYPE
  NO               0                8
  YES              3              213

Clustering(34) Variable = PCBP1 MUTATION ANALYSIS
D34V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PCBP1 WILD-TYPE"   "PCBP1 MUTATED" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PCBP1 WILD-TYPE"   "PCBP1 MUTATED" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE"   "PCBP1 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PCBP1 MUTATED" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PCBP1 WILD-TYPE"   "PCBP1 MUTATED" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PCBP1 WILD-TYPE"   "PCBP1 MUTATED" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE"   "PCBP1 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PCBP1 MUTATED" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PCBP1 WILD-TYPE"   "PCBP1 MUTATED" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PCBP1 WILD-TYPE"   "PCBP1 MUTATED" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE"   "PCBP1 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PCBP1 MUTATED" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
[1] "hr="     "2.5e+07"
D34V2, continuous
D34V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PCBP1 MUTATED      4    2
  PCBP1 WILD-TYPE  150   66
        clus
vv       PCBP1 MUTATED PCBP1 WILD-TYPE
  COLON              4             150
  RECTUM             2              66
D34V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PCBP1 MUTATED      4    2
  PCBP1 WILD-TYPE  113  105
        clus
vv       PCBP1 MUTATED PCBP1 WILD-TYPE
  FEMALE             2             105
  MALE               4             113
D34V5, multiclass
                                clus
vv                               PCBP1 MUTATED PCBP1 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              0              24
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D34V6, multiclass
    clus
vv   PCBP1 MUTATED PCBP1 WILD-TYPE
  T1             0               9
  T2             2              45
  T3             3             147
  T4             1              16
D34V7, multiclass
    clus
vv   PCBP1 MUTATED PCBP1 WILD-TYPE
  N0             5             129
  N1             1              43
  N2             0              46
D34V8, multiclass
     clus
vv    PCBP1 MUTATED PCBP1 WILD-TYPE
  M0              5             184
  M1              0              31
  M1A             1               0
D34V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PCBP1 MUTATED      6    0
  PCBP1 WILD-TYPE  210    8
     clus
vv    PCBP1 MUTATED PCBP1 WILD-TYPE
  NO              0               8
  YES             6             210

Clustering(35) Variable = ELF3 MUTATION ANALYSIS
D35V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ELF3 WILD-TYPE"   "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
  "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ELF3 WILD-TYPE"   "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ELF3 WILD-TYPE"   "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
  "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ELF3 WILD-TYPE"   "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ELF3 WILD-TYPE"   "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
  "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ELF3 WILD-TYPE"   "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
[1] "hr="     "2.5e+07"
D35V2, continuous
D35V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ELF3 MUTATED      4    3
  ELF3 WILD-TYPE  150   65
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  COLON             4            150
  RECTUM            3             65
D35V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ELF3 MUTATED      5    2
  ELF3 WILD-TYPE  112  105
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  FEMALE            2            105
  MALE              5            112
D35V5, multiclass
                                clus
vv                               ELF3 MUTATED ELF3 WILD-TYPE
  COLON ADENOCARCINOMA                      4            124
  COLON MUCINOUS ADENOCARCINOMA             0             24
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D35V6, multiclass
    clus
vv   ELF3 MUTATED ELF3 WILD-TYPE
  T1            1              8
  T2            2             45
  T3            3            147
  T4            1             16
D35V7, multiclass
    clus
vv   ELF3 MUTATED ELF3 WILD-TYPE
  N0            5            129
  N1            1             43
  N2            1             45
D35V8, multiclass
     clus
vv    ELF3 MUTATED ELF3 WILD-TYPE
  M0             6            183
  M1             1             30
  M1A            0              1
D35V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ELF3 MUTATED      6    1
  ELF3 WILD-TYPE  210    7
     clus
vv    ELF3 MUTATED ELF3 WILD-TYPE
  NO             1              7
  YES            6            210

Clustering(36) Variable = NALCN MUTATION ANALYSIS
D36V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
[1] "hr=" "1.8"
D36V2, continuous
D36V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NALCN MUTATED     14    6
  NALCN WILD-TYPE  140   62
        clus
vv       NALCN MUTATED NALCN WILD-TYPE
  COLON             14             140
  RECTUM             6              62
D36V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NALCN MUTATED     11    9
  NALCN WILD-TYPE  106   98
        clus
vv       NALCN MUTATED NALCN WILD-TYPE
  FEMALE             9              98
  MALE              11             106
D36V5, multiclass
                                clus
vv                               NALCN MUTATED NALCN WILD-TYPE
  COLON ADENOCARCINOMA                      12             116
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      6              51
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D36V6, multiclass
    clus
vv   NALCN MUTATED NALCN WILD-TYPE
  T1             1               8
  T2             4              43
  T3            13             137
  T4             2              15
D36V7, multiclass
    clus
vv   NALCN MUTATED NALCN WILD-TYPE
  N0            16             118
  N1             2              42
  N2             2              44
D36V8, multiclass
     clus
vv    NALCN MUTATED NALCN WILD-TYPE
  M0             17             172
  M1              1              30
  M1A             0               1
D36V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NALCN MUTATED     20    0
  NALCN WILD-TYPE  196    8
     clus
vv    NALCN MUTATED NALCN WILD-TYPE
  NO              0               8
  YES            20             196

Clustering(37) Variable = CPXCR1 MUTATION ANALYSIS
D37V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
[1] "hr="     "7.6e+07"
D37V2, continuous
D37V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CPXCR1 MUTATED      6    3
  CPXCR1 WILD-TYPE  148   65
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  COLON               6              148
  RECTUM              3               65
D37V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CPXCR1 MUTATED      2    7
  CPXCR1 WILD-TYPE  115  100
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  FEMALE              7              100
  MALE                2              115
D37V5, multiclass
                                clus
vv                               CPXCR1 MUTATED CPXCR1 WILD-TYPE
  COLON ADENOCARCINOMA                        5              123
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              1                7
D37V6, multiclass
    clus
vv   CPXCR1 MUTATED CPXCR1 WILD-TYPE
  T1              1                8
  T2              3               44
  T3              4              146
  T4              1               16
D37V7, multiclass
    clus
vv   CPXCR1 MUTATED CPXCR1 WILD-TYPE
  N0              5              129
  N1              4               40
  N2              0               46
D37V8, multiclass
     clus
vv    CPXCR1 MUTATED CPXCR1 WILD-TYPE
  M0               9              180
  M1               0               31
  M1A              0                1
D37V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CPXCR1 MUTATED      9    0
  CPXCR1 WILD-TYPE  207    8
     clus
vv    CPXCR1 MUTATED CPXCR1 WILD-TYPE
  NO               0                8
  YES              9              207

Clustering(38) Variable = DNAH5 MUTATION ANALYSIS
D38V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED"   "DNAH5 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED"   "DNAH5 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED"   "DNAH5 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED"   "DNAH5 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED"   "DNAH5 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED"   "DNAH5 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
[1] "hr=" "1.3"
D38V2, continuous
D38V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DNAH5 MUTATED     28    6
  DNAH5 WILD-TYPE  126   62
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  COLON             28             126
  RECTUM             6              62
D38V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DNAH5 MUTATED     16   18
  DNAH5 WILD-TYPE  101   89
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  FEMALE            18              89
  MALE              16             101
D38V5, multiclass
                                clus
vv                               DNAH5 MUTATED DNAH5 WILD-TYPE
  COLON ADENOCARCINOMA                      22             106
  COLON MUCINOUS ADENOCARCINOMA              5              19
  RECTAL ADENOCARCINOMA                      6              51
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D38V6, multiclass
    clus
vv   DNAH5 MUTATED DNAH5 WILD-TYPE
  T1             3               6
  T2             7              40
  T3            20             130
  T4             4              13
D38V7, multiclass
    clus
vv   DNAH5 MUTATED DNAH5 WILD-TYPE
  N0            25             109
  N1             4              40
  N2             5              41
D38V8, multiclass
     clus
vv    DNAH5 MUTATED DNAH5 WILD-TYPE
  M0             29             160
  M1              4              27
  M1A             0               1
D38V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DNAH5 MUTATED     34    0
  DNAH5 WILD-TYPE  182    8
     clus
vv    DNAH5 MUTATED DNAH5 WILD-TYPE
  NO              0               8
  YES            34             182

Clustering(39) Variable = ACOT4 MUTATION ANALYSIS
D39V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE"   "ACOT4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "ACOT4 MUTATED" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE"   "ACOT4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "ACOT4 MUTATED" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE"   "ACOT4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "ACOT4 MUTATED" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
[1] "Remove cluster labels:" "ACOT4 MUTATED"         
clus
  ACOT4 MUTATED ACOT4 WILD-TYPE 
              2             118 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3941 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3952      TCGA-AA-3966 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3977      TCGA-AA-3986      TCGA-AA-A004 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q      TCGA-AA-A01R 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V      TCGA-AA-A01X 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01Z      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02O      TCGA-AA-A02W 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AY-4070 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AY-4071      TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581      TCGA-AG-3582 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599      TCGA-AG-3726 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887      TCGA-AG-3892 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999      TCGA-AG-4001 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002      TCGA-AG-A008 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A025 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N      TCGA-AG-A02X 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A032      TCGA-AG-A036 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
D39V2, continuous
D39V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ACOT4 MUTATED      3    0
  ACOT4 WILD-TYPE  151   68
        clus
vv       ACOT4 MUTATED ACOT4 WILD-TYPE
  COLON              3             151
  RECTUM             0              68
D39V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ACOT4 MUTATED      2    1
  ACOT4 WILD-TYPE  115  106
        clus
vv       ACOT4 MUTATED ACOT4 WILD-TYPE
  FEMALE             1             106
  MALE               2             115
D39V5, multiclass
                                clus
vv                               ACOT4 MUTATED ACOT4 WILD-TYPE
  COLON ADENOCARCINOMA                       2             126
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      0              57
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D39V6, multiclass
    clus
vv   ACOT4 MUTATED ACOT4 WILD-TYPE
  T1             1               8
  T2             0              47
  T3             1             149
  T4             1              16
D39V7, multiclass
    clus
vv   ACOT4 MUTATED ACOT4 WILD-TYPE
  N0             2             132
  N1             0              44
  N2             1              45
D39V8, multiclass
     clus
vv    ACOT4 MUTATED ACOT4 WILD-TYPE
  M0              2             187
  M1              1              30
  M1A             0               1
D39V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ACOT4 MUTATED      3    0
  ACOT4 WILD-TYPE  213    8
     clus
vv    ACOT4 MUTATED ACOT4 WILD-TYPE
  NO              0               8
  YES             3             213

Clustering(40) Variable = CSMD3 MUTATION ANALYSIS
D40V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
[1] "hr=" "2.6"
D40V2, continuous
D40V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CSMD3 MUTATED     19    9
  CSMD3 WILD-TYPE  135   59
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  COLON             19             135
  RECTUM             9              59
D40V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CSMD3 MUTATED     14   14
  CSMD3 WILD-TYPE  103   93
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  FEMALE            14              93
  MALE              14             103
D40V5, multiclass
                                clus
vv                               CSMD3 MUTATED CSMD3 WILD-TYPE
  COLON ADENOCARCINOMA                      11             117
  COLON MUCINOUS ADENOCARCINOMA              8              16
  RECTAL ADENOCARCINOMA                      9              48
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D40V6, multiclass
    clus
vv   CSMD3 MUTATED CSMD3 WILD-TYPE
  T1             1               8
  T2             3              44
  T3            17             133
  T4             6              11
D40V7, multiclass
    clus
vv   CSMD3 MUTATED CSMD3 WILD-TYPE
  N0            21             113
  N1             4              40
  N2             3              43
D40V8, multiclass
     clus
vv    CSMD3 MUTATED CSMD3 WILD-TYPE
  M0             24             165
  M1              3              28
  M1A             0               1
D40V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CSMD3 MUTATED     27    1
  CSMD3 WILD-TYPE  189    7
     clus
vv    CSMD3 MUTATED CSMD3 WILD-TYPE
  NO              1               7
  YES            27             189

Clustering(41) Variable = ANK2 MUTATION ANALYSIS
D41V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "ANK2 MUTATED" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "ANK2 MUTATED" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "ANK2 MUTATED" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
[1] "hr=" "2.3"
D41V2, continuous
D41V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ANK2 MUTATED     25    6
  ANK2 WILD-TYPE  129   62
        clus
vv       ANK2 MUTATED ANK2 WILD-TYPE
  COLON            25            129
  RECTUM            6             62
D41V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ANK2 MUTATED     14   17
  ANK2 WILD-TYPE  103   90
        clus
vv       ANK2 MUTATED ANK2 WILD-TYPE
  FEMALE           17             90
  MALE             14            103
D41V5, multiclass
                                clus
vv                               ANK2 MUTATED ANK2 WILD-TYPE
  COLON ADENOCARCINOMA                     19            109
  COLON MUCINOUS ADENOCARCINOMA             6             18
  RECTAL ADENOCARCINOMA                     6             51
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D41V6, multiclass
    clus
vv   ANK2 MUTATED ANK2 WILD-TYPE
  T1            2              7
  T2            3             44
  T3           20            130
  T4            5             12
D41V7, multiclass
    clus
vv   ANK2 MUTATED ANK2 WILD-TYPE
  N0           20            114
  N1            6             38
  N2            5             41
D41V8, multiclass
     clus
vv    ANK2 MUTATED ANK2 WILD-TYPE
  M0            27            162
  M1             3             28
  M1A            0              1
D41V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ANK2 MUTATED     29    2
  ANK2 WILD-TYPE  187    6
     clus
vv    ANK2 MUTATED ANK2 WILD-TYPE
  NO             2              6
  YES           29            187

Clustering(42) Variable = KLHL4 MUTATION ANALYSIS
D42V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
[1] "hr=" "2.7"
D42V2, continuous
D42V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KLHL4 MUTATED     12    4
  KLHL4 WILD-TYPE  142   64
        clus
vv       KLHL4 MUTATED KLHL4 WILD-TYPE
  COLON             12             142
  RECTUM             4              64
D42V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KLHL4 MUTATED      5   11
  KLHL4 WILD-TYPE  112   96
        clus
vv       KLHL4 MUTATED KLHL4 WILD-TYPE
  FEMALE            11              96
  MALE               5             112
D42V5, multiclass
                                clus
vv                               KLHL4 MUTATED KLHL4 WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              4              20
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D42V6, multiclass
    clus
vv   KLHL4 MUTATED KLHL4 WILD-TYPE
  T1             2               7
  T2             0              47
  T3            11             139
  T4             3              14
D42V7, multiclass
    clus
vv   KLHL4 MUTATED KLHL4 WILD-TYPE
  N0            10             124
  N1             2              42
  N2             4              42
D42V8, multiclass
     clus
vv    KLHL4 MUTATED KLHL4 WILD-TYPE
  M0             16             173
  M1              0              31
  M1A             0               1
D42V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KLHL4 MUTATED     15    1
  KLHL4 WILD-TYPE  201    7
     clus
vv    KLHL4 MUTATED KLHL4 WILD-TYPE
  NO              1               7
  YES            15             201

Clustering(43) Variable = SLITRK1 MUTATION ANALYSIS
D43V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
  "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED"   "SLITRK1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
  "SLITRK1 MUTATED"   "SLITRK1 MUTATED"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
  "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED"   "SLITRK1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
  "SLITRK1 MUTATED"   "SLITRK1 MUTATED"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
  "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED"   "SLITRK1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
  "SLITRK1 MUTATED"   "SLITRK1 MUTATED"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
[1] "hr=" "1.1"
D43V2, continuous
D43V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLITRK1 MUTATED     10    5
  SLITRK1 WILD-TYPE  144   63
        clus
vv       SLITRK1 MUTATED SLITRK1 WILD-TYPE
  COLON               10               144
  RECTUM               5                63
D43V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLITRK1 MUTATED     11    4
  SLITRK1 WILD-TYPE  106  103
        clus
vv       SLITRK1 MUTATED SLITRK1 WILD-TYPE
  FEMALE               4               103
  MALE                11               106
D43V5, multiclass
                                clus
vv                               SLITRK1 MUTATED SLITRK1 WILD-TYPE
  COLON ADENOCARCINOMA                         8               120
  COLON MUCINOUS ADENOCARCINOMA                2                22
  RECTAL ADENOCARCINOMA                        5                52
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D43V6, multiclass
    clus
vv   SLITRK1 MUTATED SLITRK1 WILD-TYPE
  T1               0                 9
  T2               7                40
  T3               6               144
  T4               2                15
D43V7, multiclass
    clus
vv   SLITRK1 MUTATED SLITRK1 WILD-TYPE
  N0              12               122
  N1               2                42
  N2               1                45
D43V8, multiclass
     clus
vv    SLITRK1 MUTATED SLITRK1 WILD-TYPE
  M0               14               175
  M1                0                31
  M1A               0                 1
D43V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLITRK1 MUTATED     15    0
  SLITRK1 WILD-TYPE  201    8
     clus
vv    SLITRK1 MUTATED SLITRK1 WILD-TYPE
  NO                0                 8
  YES              15               201

Clustering(44) Variable = NRXN1 MUTATION ANALYSIS
D44V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
[1] "hr=" "1.5"
D44V2, continuous
D44V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NRXN1 MUTATED     17    3
  NRXN1 WILD-TYPE  137   65
        clus
vv       NRXN1 MUTATED NRXN1 WILD-TYPE
  COLON             17             137
  RECTUM             3              65
D44V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NRXN1 MUTATED     11    9
  NRXN1 WILD-TYPE  106   98
        clus
vv       NRXN1 MUTATED NRXN1 WILD-TYPE
  FEMALE             9              98
  MALE              11             106
D44V5, multiclass
                                clus
vv                               NRXN1 MUTATED NRXN1 WILD-TYPE
  COLON ADENOCARCINOMA                      14             114
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D44V6, multiclass
    clus
vv   NRXN1 MUTATED NRXN1 WILD-TYPE
  T1             1               8
  T2             6              41
  T3            10             140
  T4             3              14
D44V7, multiclass
    clus
vv   NRXN1 MUTATED NRXN1 WILD-TYPE
  N0            17             117
  N1             2              42
  N2             1              45
D44V8, multiclass
     clus
vv    NRXN1 MUTATED NRXN1 WILD-TYPE
  M0             18             171
  M1              1              30
  M1A             0               1
D44V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NRXN1 MUTATED     20    0
  NRXN1 WILD-TYPE  196    8
     clus
vv    NRXN1 MUTATED NRXN1 WILD-TYPE
  NO              0               8
  YES            20             196

Clustering(45) Variable = CNTN6 MUTATION ANALYSIS
D45V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNTN6 MUTATED"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
  "CNTN6 MUTATED"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
  "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNTN6 MUTATED"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
  "CNTN6 MUTATED"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
  "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNTN6 MUTATED"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
  "CNTN6 MUTATED"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
  "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
[1] "hr=" "1.8"
D45V2, continuous
D45V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNTN6 MUTATED     15    2
  CNTN6 WILD-TYPE  139   66
        clus
vv       CNTN6 MUTATED CNTN6 WILD-TYPE
  COLON             15             139
  RECTUM             2              66
D45V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNTN6 MUTATED      6   11
  CNTN6 WILD-TYPE  111   96
        clus
vv       CNTN6 MUTATED CNTN6 WILD-TYPE
  FEMALE            11              96
  MALE               6             111
D45V5, multiclass
                                clus
vv                               CNTN6 MUTATED CNTN6 WILD-TYPE
  COLON ADENOCARCINOMA                      12             116
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D45V6, multiclass
    clus
vv   CNTN6 MUTATED CNTN6 WILD-TYPE
  T1             1               8
  T2             5              42
  T3             8             142
  T4             3              14
D45V7, multiclass
    clus
vv   CNTN6 MUTATED CNTN6 WILD-TYPE
  N0            14             120
  N1             2              42
  N2             1              45
D45V8, multiclass
     clus
vv    CNTN6 MUTATED CNTN6 WILD-TYPE
  M0             17             172
  M1              0              31
  M1A             0               1
D45V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNTN6 MUTATED     16    1
  CNTN6 WILD-TYPE  200    7
     clus
vv    CNTN6 MUTATED CNTN6 WILD-TYPE
  NO              1               7
  YES            16             200

Clustering(46) Variable = OR6N1 MUTATION ANALYSIS
D46V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR6N1 WILD-TYPE"   "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR6N1 WILD-TYPE"   "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR6N1 WILD-TYPE"   "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
[1] "hr=" "1.2"
D46V2, continuous
D46V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6N1 MUTATED      8    2
  OR6N1 WILD-TYPE  146   66
        clus
vv       OR6N1 MUTATED OR6N1 WILD-TYPE
  COLON              8             146
  RECTUM             2              66
D46V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6N1 MUTATED      6    4
  OR6N1 WILD-TYPE  111  103
        clus
vv       OR6N1 MUTATED OR6N1 WILD-TYPE
  FEMALE             4             103
  MALE               6             111
D46V5, multiclass
                                clus
vv                               OR6N1 MUTATED OR6N1 WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D46V6, multiclass
    clus
vv   OR6N1 MUTATED OR6N1 WILD-TYPE
  T1             0               9
  T2             3              44
  T3             6             144
  T4             1              16
D46V7, multiclass
    clus
vv   OR6N1 MUTATED OR6N1 WILD-TYPE
  N0             6             128
  N1             3              41
  N2             1              45
D46V8, multiclass
     clus
vv    OR6N1 MUTATED OR6N1 WILD-TYPE
  M0              8             181
  M1              1              30
  M1A             0               1
D46V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6N1 MUTATED     10    0
  OR6N1 WILD-TYPE  206    8
     clus
vv    OR6N1 MUTATED OR6N1 WILD-TYPE
  NO              0               8
  YES            10             206

Clustering(47) Variable = BAI3 MUTATION ANALYSIS
D47V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" "BAI3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BAI3 WILD-TYPE"   "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"BAI3 WILD-TYPE"   "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" "BAI3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BAI3 WILD-TYPE"   "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"BAI3 WILD-TYPE"   "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" "BAI3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BAI3 WILD-TYPE"   "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"BAI3 WILD-TYPE"   "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
[1] "hr=" "1.2"
D47V2, continuous
D47V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BAI3 MUTATED     12    6
  BAI3 WILD-TYPE  142   62
        clus
vv       BAI3 MUTATED BAI3 WILD-TYPE
  COLON            12            142
  RECTUM            6             62
D47V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BAI3 MUTATED      9    9
  BAI3 WILD-TYPE  108   98
        clus
vv       BAI3 MUTATED BAI3 WILD-TYPE
  FEMALE            9             98
  MALE              9            108
D47V5, multiclass
                                clus
vv                               BAI3 MUTATED BAI3 WILD-TYPE
  COLON ADENOCARCINOMA                      7            121
  COLON MUCINOUS ADENOCARCINOMA             5             19
  RECTAL ADENOCARCINOMA                     6             51
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D47V6, multiclass
    clus
vv   BAI3 MUTATED BAI3 WILD-TYPE
  T1            1              8
  T2            4             43
  T3            9            141
  T4            4             13
D47V7, multiclass
    clus
vv   BAI3 MUTATED BAI3 WILD-TYPE
  N0           15            119
  N1            1             43
  N2            2             44
D47V8, multiclass
     clus
vv    BAI3 MUTATED BAI3 WILD-TYPE
  M0            16            173
  M1             2             29
  M1A            0              1
D47V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BAI3 MUTATED     18    0
  BAI3 WILD-TYPE  198    8
     clus
vv    BAI3 MUTATED BAI3 WILD-TYPE
  NO             0              8
  YES           18            198

Clustering(48) Variable = OR2M4 MUTATION ANALYSIS
D48V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED"   "OR2M4 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED"   "OR2M4 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED"   "OR2M4 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
[1] "hr="     "9200000"
D48V2, continuous
D48V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M4 MUTATED      8    0
  OR2M4 WILD-TYPE  146   68
        clus
vv       OR2M4 MUTATED OR2M4 WILD-TYPE
  COLON              8             146
  RECTUM             0              68
D48V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M4 MUTATED      3    5
  OR2M4 WILD-TYPE  114  102
        clus
vv       OR2M4 MUTATED OR2M4 WILD-TYPE
  FEMALE             5             102
  MALE               3             114
D48V5, multiclass
                                clus
vv                               OR2M4 MUTATED OR2M4 WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              0              24
  RECTAL ADENOCARCINOMA                      0              57
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D48V6, multiclass
    clus
vv   OR2M4 MUTATED OR2M4 WILD-TYPE
  T1             0               9
  T2             1              46
  T3             6             144
  T4             1              16
D48V7, multiclass
    clus
vv   OR2M4 MUTATED OR2M4 WILD-TYPE
  N0             5             129
  N1             1              43
  N2             2              44
D48V8, multiclass
     clus
vv    OR2M4 MUTATED OR2M4 WILD-TYPE
  M0              7             182
  M1              1              30
  M1A             0               1
D48V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M4 MUTATED      8    0
  OR2M4 WILD-TYPE  208    8
     clus
vv    OR2M4 MUTATED OR2M4 WILD-TYPE
  NO              0               8
  YES             8             208

Clustering(49) Variable = PRDM9 MUTATION ANALYSIS
D49V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
[1] "hr="     "7.6e+07"
D49V2, continuous
D49V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRDM9 MUTATED     11    5
  PRDM9 WILD-TYPE  143   63
        clus
vv       PRDM9 MUTATED PRDM9 WILD-TYPE
  COLON             11             143
  RECTUM             5              63
D49V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRDM9 MUTATED      7    9
  PRDM9 WILD-TYPE  110   98
        clus
vv       PRDM9 MUTATED PRDM9 WILD-TYPE
  FEMALE             9              98
  MALE               7             110
D49V5, multiclass
                                clus
vv                               PRDM9 MUTATED PRDM9 WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      5              52
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D49V6, multiclass
    clus
vv   PRDM9 MUTATED PRDM9 WILD-TYPE
  T1             1               8
  T2             2              45
  T3            10             140
  T4             3              14
D49V7, multiclass
    clus
vv   PRDM9 MUTATED PRDM9 WILD-TYPE
  N0            11             123
  N1             4              40
  N2             1              45
D49V8, multiclass
     clus
vv    PRDM9 MUTATED PRDM9 WILD-TYPE
  M0             15             174
  M1              0              31
  M1A             1               0
D49V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRDM9 MUTATED     16    0
  PRDM9 WILD-TYPE  200    8
     clus
vv    PRDM9 MUTATED PRDM9 WILD-TYPE
  NO              0               8
  YES            16             200

Clustering(50) Variable = CCDC160 MUTATION ANALYSIS
D50V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "CCDC160 MUTATED" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"CCDC160 WILD-TYPE"   "CCDC160 MUTATED" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "CCDC160 MUTATED" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "CCDC160 MUTATED" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"CCDC160 WILD-TYPE"   "CCDC160 MUTATED" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "CCDC160 MUTATED" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "CCDC160 MUTATED" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"CCDC160 WILD-TYPE"   "CCDC160 MUTATED" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "CCDC160 MUTATED" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D50V2, continuous
D50V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CCDC160 MUTATED      5    2
  CCDC160 WILD-TYPE  149   66
        clus
vv       CCDC160 MUTATED CCDC160 WILD-TYPE
  COLON                5               149
  RECTUM               2                66
D50V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CCDC160 MUTATED      2    5
  CCDC160 WILD-TYPE  115  102
        clus
vv       CCDC160 MUTATED CCDC160 WILD-TYPE
  FEMALE               5               102
  MALE                 2               115
D50V5, multiclass
                                clus
vv                               CCDC160 MUTATED CCDC160 WILD-TYPE
  COLON ADENOCARCINOMA                         5               123
  COLON MUCINOUS ADENOCARCINOMA                0                24
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D50V6, multiclass
    clus
vv   CCDC160 MUTATED CCDC160 WILD-TYPE
  T1               1                 8
  T2               1                46
  T3               3               147
  T4               2                15
D50V7, multiclass
    clus
vv   CCDC160 MUTATED CCDC160 WILD-TYPE
  N0               5               129
  N1               2                42
  N2               0                46
D50V8, multiclass
     clus
vv    CCDC160 MUTATED CCDC160 WILD-TYPE
  M0                6               183
  M1                1                30
  M1A               0                 1
D50V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CCDC160 MUTATED      7    0
  CCDC160 WILD-TYPE  209    8
     clus
vv    CCDC160 MUTATED CCDC160 WILD-TYPE
  NO                0                 8
  YES               7               209

Clustering(51) Variable = CHRDL1 MUTATION ANALYSIS
D51V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE"   "CHRDL1 MUTATED" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CHRDL1 WILD-TYPE"   "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
  "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CHRDL1 WILD-TYPE"   "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE"   "CHRDL1 MUTATED" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CHRDL1 WILD-TYPE"   "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
  "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CHRDL1 WILD-TYPE"   "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE"   "CHRDL1 MUTATED" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CHRDL1 WILD-TYPE"   "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
  "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CHRDL1 WILD-TYPE"   "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
[1] "hr=" "1.1"
D51V2, continuous
D51V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CHRDL1 MUTATED      7    4
  CHRDL1 WILD-TYPE  147   64
        clus
vv       CHRDL1 MUTATED CHRDL1 WILD-TYPE
  COLON               7              147
  RECTUM              4               64
D51V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CHRDL1 MUTATED      5    6
  CHRDL1 WILD-TYPE  112  101
        clus
vv       CHRDL1 MUTATED CHRDL1 WILD-TYPE
  FEMALE              6              101
  MALE                5              112
D51V5, multiclass
                                clus
vv                               CHRDL1 MUTATED CHRDL1 WILD-TYPE
  COLON ADENOCARCINOMA                        6              122
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       4               53
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D51V6, multiclass
    clus
vv   CHRDL1 MUTATED CHRDL1 WILD-TYPE
  T1              1                8
  T2              2               45
  T3              6              144
  T4              2               15
D51V7, multiclass
    clus
vv   CHRDL1 MUTATED CHRDL1 WILD-TYPE
  N0              7              127
  N1              2               42
  N2              2               44
D51V8, multiclass
     clus
vv    CHRDL1 MUTATED CHRDL1 WILD-TYPE
  M0              11              178
  M1               0               31
  M1A              0                1
D51V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CHRDL1 MUTATED     11    0
  CHRDL1 WILD-TYPE  205    8
     clus
vv    CHRDL1 MUTATED CHRDL1 WILD-TYPE
  NO               0                8
  YES             11              205

Clustering(52) Variable = PRIM2 MUTATION ANALYSIS
D52V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
[1] "hr=" "3.6"
D52V2, continuous
D52V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRIM2 MUTATED      5    3
  PRIM2 WILD-TYPE  149   65
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  COLON              5             149
  RECTUM             3              65
D52V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRIM2 MUTATED      5    3
  PRIM2 WILD-TYPE  112  104
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  FEMALE             3             104
  MALE               5             112
D52V5, multiclass
                                clus
vv                               PRIM2 MUTATED PRIM2 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D52V6, multiclass
    clus
vv   PRIM2 MUTATED PRIM2 WILD-TYPE
  T1             0               9
  T2             3              44
  T3             3             147
  T4             2              15
D52V7, multiclass
    clus
vv   PRIM2 MUTATED PRIM2 WILD-TYPE
  N0             7             127
  N1             1              43
  N2             0              46
D52V8, multiclass
     clus
vv    PRIM2 MUTATED PRIM2 WILD-TYPE
  M0              7             182
  M1              1              30
  M1A             0               1
D52V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRIM2 MUTATED      8    0
  PRIM2 WILD-TYPE  208    8
     clus
vv    PRIM2 MUTATED PRIM2 WILD-TYPE
  NO              0               8
  YES             8             208

Clustering(53) Variable = PTEN MUTATION ANALYSIS
D53V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
[1] "hr="     "2.6e+07"
D53V2, continuous
D53V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTEN MUTATED      4    3
  PTEN WILD-TYPE  150   65
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  COLON             4            150
  RECTUM            3             65
D53V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTEN MUTATED      3    4
  PTEN WILD-TYPE  114  103
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  FEMALE            4            103
  MALE              3            114
D53V5, multiclass
                                clus
vv                               PTEN MUTATED PTEN WILD-TYPE
  COLON ADENOCARCINOMA                      3            125
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            1              7
D53V6, multiclass
    clus
vv   PTEN MUTATED PTEN WILD-TYPE
  T1            1              8
  T2            2             45
  T3            3            147
  T4            1             16
D53V7, multiclass
    clus
vv   PTEN MUTATED PTEN WILD-TYPE
  N0            5            129
  N1            1             43
  N2            1             45
D53V8, multiclass
     clus
vv    PTEN MUTATED PTEN WILD-TYPE
  M0             5            184
  M1             1             30
  M1A            0              1
D53V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTEN MUTATED      7    0
  PTEN WILD-TYPE  209    8
     clus
vv    PTEN MUTATED PTEN WILD-TYPE
  NO             0              8
  YES            7            209

Clustering(54) Variable = SYNE1 MUTATION ANALYSIS
D54V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "SYNE1 MUTATED"   "SYNE1 MUTATED"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "SYNE1 MUTATED"   "SYNE1 MUTATED"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "SYNE1 MUTATED"   "SYNE1 MUTATED"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
[1] "hr=" "2"  
D54V2, continuous
D54V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SYNE1 MUTATED     37   10
  SYNE1 WILD-TYPE  117   58
        clus
vv       SYNE1 MUTATED SYNE1 WILD-TYPE
  COLON             37             117
  RECTUM            10              58
D54V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SYNE1 MUTATED     23   24
  SYNE1 WILD-TYPE   94   83
        clus
vv       SYNE1 MUTATED SYNE1 WILD-TYPE
  FEMALE            24              83
  MALE              23              94
D54V5, multiclass
                                clus
vv                               SYNE1 MUTATED SYNE1 WILD-TYPE
  COLON ADENOCARCINOMA                      26             102
  COLON MUCINOUS ADENOCARCINOMA             10              14
  RECTAL ADENOCARCINOMA                      9              48
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D54V6, multiclass
    clus
vv   SYNE1 MUTATED SYNE1 WILD-TYPE
  T1             5               4
  T2             6              41
  T3            30             120
  T4             5              12
D54V7, multiclass
    clus
vv   SYNE1 MUTATED SYNE1 WILD-TYPE
  N0            32             102
  N1            10              34
  N2             5              41
D54V8, multiclass
     clus
vv    SYNE1 MUTATED SYNE1 WILD-TYPE
  M0             42             147
  M1              3              28
  M1A             0               1
D54V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SYNE1 MUTATED     44    3
  SYNE1 WILD-TYPE  172    5
     clus
vv    SYNE1 MUTATED SYNE1 WILD-TYPE
  NO              3               5
  YES            44             172

Clustering(55) Variable = BTNL8 MUTATION ANALYSIS
D55V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"BTNL8 WILD-TYPE"   "BTNL8 MUTATED" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"BTNL8 WILD-TYPE"   "BTNL8 MUTATED" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"BTNL8 WILD-TYPE"   "BTNL8 MUTATED" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
[1] "Remove cluster labels:" "BTNL8 MUTATED"         
clus
  BTNL8 MUTATED BTNL8 WILD-TYPE 
              1             119 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3818 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3846 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877      TCGA-AA-3939 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3952 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977      TCGA-AA-3986 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024      TCGA-AA-A029 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02O 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689      TCGA-AF-2691 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
D55V2, continuous
D55V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BTNL8 MUTATED      3    0
  BTNL8 WILD-TYPE  151   68
        clus
vv       BTNL8 MUTATED BTNL8 WILD-TYPE
  COLON              3             151
  RECTUM             0              68
D55V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BTNL8 MUTATED      1    2
  BTNL8 WILD-TYPE  116  105
        clus
vv       BTNL8 MUTATED BTNL8 WILD-TYPE
  FEMALE             2             105
  MALE               1             116
D55V5, multiclass
[1] "Remove cluster labels:" "BTNL8 MUTATED"         
clus
  BTNL8 MUTATED BTNL8 WILD-TYPE 
              2             215 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3531 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561      TCGA-AA-3562 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667      TCGA-AA-3672 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679      TCGA-AA-3680 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685      TCGA-AA-3688 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3695      TCGA-AA-3696 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812      TCGA-AA-3814 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3833      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3864      TCGA-AA-3866 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3952 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966      TCGA-AA-3971 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3977      TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A022      TCGA-AA-A024 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AF-2689      TCGA-AF-2691 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3587      TCGA-AG-3593 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3600      TCGA-AG-3601 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3887 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A002 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
D55V6, multiclass
    clus
vv   BTNL8 MUTATED BTNL8 WILD-TYPE
  T1             0               9
  T2             1              46
  T3             2             148
  T4             0              17
D55V7, multiclass
    clus
vv   BTNL8 MUTATED BTNL8 WILD-TYPE
  N0             3             131
  N1             0              44
  N2             0              46
D55V8, multiclass
     clus
vv    BTNL8 MUTATED BTNL8 WILD-TYPE
  M0              3             186
  M1              0              31
  M1A             0               1
D55V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BTNL8 MUTATED      3    0
  BTNL8 WILD-TYPE  213    8
     clus
vv    BTNL8 MUTATED BTNL8 WILD-TYPE
  NO              0               8
  YES             3             213

Clustering(56) Variable = ZNF395 MUTATION ANALYSIS
D56V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE"   "ZNF395 MUTATED" "ZNF395 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "ZNF395 MUTATED" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE"   "ZNF395 MUTATED" "ZNF395 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "ZNF395 MUTATED" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE"   "ZNF395 MUTATED" "ZNF395 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "ZNF395 MUTATED" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
[1] "Remove cluster labels:" "ZNF395 MUTATED"        
clus
  ZNF395 MUTATED ZNF395 WILD-TYPE 
               2              118 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3949       TCGA-AA-3952 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977       TCGA-AA-3986 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P       TCGA-AA-A01Q 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T       TCGA-AA-A01V 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024       TCGA-AA-A029 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02O 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F       TCGA-AA-A03J 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689       TCGA-AF-2691 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02X 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
      TCGA-AG-A032       TCGA-AG-A036 
"ZNF395 WILD-TYPE" "ZNF395 WILD-TYPE" 
D56V2, continuous
D56V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF395 MUTATED      1    2
  ZNF395 WILD-TYPE  153   66
        clus
vv       ZNF395 MUTATED ZNF395 WILD-TYPE
  COLON               1              153
  RECTUM              2               66
D56V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF395 MUTATED      2    1
  ZNF395 WILD-TYPE  115  106
        clus
vv       ZNF395 MUTATED ZNF395 WILD-TYPE
  FEMALE              1              106
  MALE                2              115
D56V5, multiclass
                                clus
vv                               ZNF395 MUTATED ZNF395 WILD-TYPE
  COLON ADENOCARCINOMA                        0              128
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D56V6, multiclass
    clus
vv   ZNF395 MUTATED ZNF395 WILD-TYPE
  T1              0                9
  T2              0               47
  T3              2              148
  T4              1               16
D56V7, multiclass
    clus
vv   ZNF395 MUTATED ZNF395 WILD-TYPE
  N0              3              131
  N1              0               44
  N2              0               46
D56V8, multiclass
     clus
vv    ZNF395 MUTATED ZNF395 WILD-TYPE
  M0               3              186
  M1               0               31
  M1A              0                1
D56V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF395 MUTATED      3    0
  ZNF395 WILD-TYPE  213    8
     clus
vv    ZNF395 MUTATED ZNF395 WILD-TYPE
  NO               0                8
  YES              3              213

Clustering(57) Variable = RPAP2 MUTATION ANALYSIS
D57V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RPAP2 MUTATED" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "RPAP2 MUTATED" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RPAP2 MUTATED" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "RPAP2 MUTATED" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RPAP2 MUTATED" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "RPAP2 MUTATED" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
[1] "Remove cluster labels:" "RPAP2 MUTATED"         
clus
  RPAP2 MUTATED RPAP2 WILD-TYPE 
              2             118 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024      TCGA-AA-A029 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02O 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689      TCGA-AF-2691 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02X 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
     TCGA-AG-A032      TCGA-AG-A036 
"RPAP2 WILD-TYPE" "RPAP2 WILD-TYPE" 
D57V2, continuous
D57V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RPAP2 MUTATED      2    1
  RPAP2 WILD-TYPE  152   67
        clus
vv       RPAP2 MUTATED RPAP2 WILD-TYPE
  COLON              2             152
  RECTUM             1              67
D57V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RPAP2 MUTATED      1    2
  RPAP2 WILD-TYPE  116  105
        clus
vv       RPAP2 MUTATED RPAP2 WILD-TYPE
  FEMALE             2             105
  MALE               1             116
D57V5, multiclass
                                clus
vv                               RPAP2 MUTATED RPAP2 WILD-TYPE
  COLON ADENOCARCINOMA                       2             126
  COLON MUCINOUS ADENOCARCINOMA              0              24
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D57V6, multiclass
    clus
vv   RPAP2 MUTATED RPAP2 WILD-TYPE
  T1             0               9
  T2             0              47
  T3             2             148
  T4             1              16
D57V7, multiclass
    clus
vv   RPAP2 MUTATED RPAP2 WILD-TYPE
  N0             2             132
  N1             1              43
  N2             0              46
D57V8, multiclass
     clus
vv    RPAP2 MUTATED RPAP2 WILD-TYPE
  M0              3             186
  M1              0              31
  M1A             0               1
D57V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RPAP2 MUTATED      3    0
  RPAP2 WILD-TYPE  213    8
     clus
vv    RPAP2 MUTATED RPAP2 WILD-TYPE
  NO              0               8
  YES             3             213

Clustering(58) Variable = MGC26647 MUTATION ANALYSIS
D58V1, survival
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "MGC26647 MUTATED" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "MGC26647 MUTATED" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "MGC26647 MUTATED" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
[1] "hr=" "1.6"
D58V2, continuous
D58V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  MGC26647 MUTATED      7    0
  MGC26647 WILD-TYPE  147   68
        clus
vv       MGC26647 MUTATED MGC26647 WILD-TYPE
  COLON                 7                147
  RECTUM                0                 68
D58V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  MGC26647 MUTATED      2    5
  MGC26647 WILD-TYPE  115  102
        clus
vv       MGC26647 MUTATED MGC26647 WILD-TYPE
  FEMALE                5                102
  MALE                  2                115
D58V5, multiclass
                                clus
vv                               MGC26647 MUTATED MGC26647 WILD-TYPE
  COLON ADENOCARCINOMA                          5                123
  COLON MUCINOUS ADENOCARCINOMA                 2                 22
  RECTAL ADENOCARCINOMA                         0                 57
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
D58V6, multiclass
    clus
vv   MGC26647 MUTATED MGC26647 WILD-TYPE
  T1                0                  9
  T2                2                 45
  T3                3                147
  T4                2                 15
D58V7, multiclass
    clus
vv   MGC26647 MUTATED MGC26647 WILD-TYPE
  N0                6                128
  N1                0                 44
  N2                1                 45
D58V8, multiclass
     clus
vv    MGC26647 MUTATED MGC26647 WILD-TYPE
  M0                 7                182
  M1                 0                 31
  M1A                0                  1
D58V9, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  MGC26647 MUTATED      7    0
  MGC26647 WILD-TYPE  209    8
     clus
vv    MGC26647 MUTATED MGC26647 WILD-TYPE
  NO                 0                  8
  YES                7                209

Clustering(59) Variable = ERBB4 MUTATION ANALYSIS
D59V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
[1] "hr=" "3.1"
D59V2, continuous
D59V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ERBB4 MUTATED     13    4
  ERBB4 WILD-TYPE  141   64
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  COLON             13             141
  RECTUM             4              64
D59V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ERBB4 MUTATED      8   10
  ERBB4 WILD-TYPE  109   97
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  FEMALE            10              97
  MALE               8             109
D59V5, multiclass
                                clus
vv                               ERBB4 MUTATED ERBB4 WILD-TYPE
  COLON ADENOCARCINOMA                      10             118
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D59V6, multiclass
    clus
vv   ERBB4 MUTATED ERBB4 WILD-TYPE
  T1             2               7
  T2             4              43
  T3             9             141
  T4             3              14
D59V7, multiclass
    clus
vv   ERBB4 MUTATED ERBB4 WILD-TYPE
  N0            16             118
  N1             2              42
  N2             0              46
D59V8, multiclass
     clus
vv    ERBB4 MUTATED ERBB4 WILD-TYPE
  M0             17             172
  M1              0              31
  M1A             0               1
D59V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ERBB4 MUTATED     18    0
  ERBB4 WILD-TYPE  198    8
     clus
vv    ERBB4 MUTATED ERBB4 WILD-TYPE
  NO              0               8
  YES            18             198

Clustering(60) Variable = MGC42105 MUTATION ANALYSIS
D60V1, survival
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
  "MGC42105 MUTATED" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE"   "MGC42105 MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"MGC42105 WILD-TYPE"   "MGC42105 MUTATED" "MGC42105 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"MGC42105 WILD-TYPE"   "MGC42105 MUTATED" "MGC42105 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
  "MGC42105 MUTATED" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE"   "MGC42105 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"MGC42105 WILD-TYPE"   "MGC42105 MUTATED" "MGC42105 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
  "MGC42105 MUTATED" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE"   "MGC42105 MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"MGC42105 WILD-TYPE"   "MGC42105 MUTATED" "MGC42105 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"MGC42105 WILD-TYPE"   "MGC42105 MUTATED" "MGC42105 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
  "MGC42105 MUTATED" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE"   "MGC42105 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"MGC42105 WILD-TYPE"   "MGC42105 MUTATED" "MGC42105 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
  "MGC42105 MUTATED" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE"   "MGC42105 MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"MGC42105 WILD-TYPE"   "MGC42105 MUTATED" "MGC42105 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"MGC42105 WILD-TYPE"   "MGC42105 MUTATED" "MGC42105 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
  "MGC42105 MUTATED" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE"   "MGC42105 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"MGC42105 WILD-TYPE"   "MGC42105 MUTATED" "MGC42105 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D60V2, continuous
D60V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  MGC42105 MUTATED     10    1
  MGC42105 WILD-TYPE  144   67
        clus
vv       MGC42105 MUTATED MGC42105 WILD-TYPE
  COLON                10                144
  RECTUM                1                 67
D60V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  MGC42105 MUTATED      5    6
  MGC42105 WILD-TYPE  112  101
        clus
vv       MGC42105 MUTATED MGC42105 WILD-TYPE
  FEMALE                6                101
  MALE                  5                112
D60V5, multiclass
                                clus
vv                               MGC42105 MUTATED MGC42105 WILD-TYPE
  COLON ADENOCARCINOMA                          8                120
  COLON MUCINOUS ADENOCARCINOMA                 2                 22
  RECTAL ADENOCARCINOMA                         1                 56
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
D60V6, multiclass
    clus
vv   MGC42105 MUTATED MGC42105 WILD-TYPE
  T1                1                  8
  T2                4                 43
  T3                6                144
  T4                0                 17
D60V7, multiclass
    clus
vv   MGC42105 MUTATED MGC42105 WILD-TYPE
  N0                9                125
  N1                1                 43
  N2                1                 45
D60V8, multiclass
     clus
vv    MGC42105 MUTATED MGC42105 WILD-TYPE
  M0                 9                180
  M1                 0                 31
  M1A                0                  1
D60V9, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  MGC42105 MUTATED     11    0
  MGC42105 WILD-TYPE  205    8
     clus
vv    MGC42105 MUTATED MGC42105 WILD-TYPE
  NO                 0                  8
  YES               11                205

Clustering(61) Variable = KLK2 MUTATION ANALYSIS
D61V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "KLK2 MUTATED" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE"   "KLK2 MUTATED" "KLK2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "KLK2 MUTATED" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE"   "KLK2 MUTATED" "KLK2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "KLK2 MUTATED" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE"   "KLK2 MUTATED" "KLK2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
[1] "Remove cluster labels:" "KLK2 MUTATED"          
clus
  KLK2 MUTATED KLK2 WILD-TYPE 
             2            118 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679     TCGA-AA-3685 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3818 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3846 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877     TCGA-AA-3939 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3952 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977     TCGA-AA-3986 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A004     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01P     TCGA-AA-A01Q     TCGA-AA-A01R 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01S     TCGA-AA-A01T     TCGA-AA-A01V     TCGA-AA-A01X 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01Z     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02O     TCGA-AA-A02W 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A02Y     TCGA-AA-A03F     TCGA-AA-A03J     TCGA-AY-4070 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AY-4071     TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581     TCGA-AG-3582 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599     TCGA-AG-3726 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887     TCGA-AG-3892 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999     TCGA-AG-4001 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002     TCGA-AG-A008 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020     TCGA-AG-A025 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N     TCGA-AG-A02X 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A032     TCGA-AG-A036 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
D61V2, continuous
D61V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  KLK2 MUTATED      3    0
  KLK2 WILD-TYPE  151   68
        clus
vv       KLK2 MUTATED KLK2 WILD-TYPE
  COLON             3            151
  RECTUM            0             68
D61V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  KLK2 MUTATED      2    1
  KLK2 WILD-TYPE  115  106
        clus
vv       KLK2 MUTATED KLK2 WILD-TYPE
  FEMALE            1            106
  MALE              2            115
D61V5, multiclass
                                clus
vv                               KLK2 MUTATED KLK2 WILD-TYPE
  COLON ADENOCARCINOMA                      2            126
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     0             57
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D61V6, multiclass
    clus
vv   KLK2 MUTATED KLK2 WILD-TYPE
  T1            0              9
  T2            0             47
  T3            3            147
  T4            0             17
D61V7, multiclass
    clus
vv   KLK2 MUTATED KLK2 WILD-TYPE
  N0            2            132
  N1            0             44
  N2            1             45
D61V8, multiclass
     clus
vv    KLK2 MUTATED KLK2 WILD-TYPE
  M0             3            186
  M1             0             31
  M1A            0              1
D61V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  KLK2 MUTATED      3    0
  KLK2 WILD-TYPE  213    8
     clus
vv    KLK2 MUTATED KLK2 WILD-TYPE
  NO             0              8
  YES            3            213

Clustering(62) Variable = LRRN3 MUTATION ANALYSIS
D62V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
[1] "hr=" "1.2"
D62V2, continuous
D62V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRRN3 MUTATED      9    1
  LRRN3 WILD-TYPE  145   67
        clus
vv       LRRN3 MUTATED LRRN3 WILD-TYPE
  COLON              9             145
  RECTUM             1              67
D62V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRRN3 MUTATED      4    6
  LRRN3 WILD-TYPE  113  101
        clus
vv       LRRN3 MUTATED LRRN3 WILD-TYPE
  FEMALE             6             101
  MALE               4             113
D62V5, multiclass
                                clus
vv                               LRRN3 MUTATED LRRN3 WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D62V6, multiclass
    clus
vv   LRRN3 MUTATED LRRN3 WILD-TYPE
  T1             0               9
  T2             1              46
  T3             7             143
  T4             2              15
D62V7, multiclass
    clus
vv   LRRN3 MUTATED LRRN3 WILD-TYPE
  N0             3             131
  N1             4              40
  N2             3              43
D62V8, multiclass
     clus
vv    LRRN3 MUTATED LRRN3 WILD-TYPE
  M0              8             181
  M1              1              30
  M1A             1               0
D62V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRRN3 MUTATED      9    1
  LRRN3 WILD-TYPE  207    7
     clus
vv    LRRN3 MUTATED LRRN3 WILD-TYPE
  NO              1               7
  YES             9             207

Clustering(63) Variable = EPHA5 MUTATION ANALYSIS
D63V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE"   "EPHA5 MUTATED" "EPHA5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE"   "EPHA5 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE"   "EPHA5 MUTATED" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "EPHA5 MUTATED" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "EPHA5 MUTATED"   "EPHA5 MUTATED" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"EPHA5 WILD-TYPE"   "EPHA5 MUTATED" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE"   "EPHA5 MUTATED" "EPHA5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE"   "EPHA5 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE"   "EPHA5 MUTATED" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "EPHA5 MUTATED" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "EPHA5 MUTATED"   "EPHA5 MUTATED" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"EPHA5 WILD-TYPE"   "EPHA5 MUTATED" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE"   "EPHA5 MUTATED" "EPHA5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE"   "EPHA5 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE"   "EPHA5 MUTATED" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "EPHA5 MUTATED" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "EPHA5 MUTATED"   "EPHA5 MUTATED" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"EPHA5 WILD-TYPE"   "EPHA5 MUTATED" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
[1] "hr=" "1.1"
D63V2, continuous
D63V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA5 MUTATED     10    4
  EPHA5 WILD-TYPE  144   64
        clus
vv       EPHA5 MUTATED EPHA5 WILD-TYPE
  COLON             10             144
  RECTUM             4              64
D63V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA5 MUTATED      8    6
  EPHA5 WILD-TYPE  109  101
        clus
vv       EPHA5 MUTATED EPHA5 WILD-TYPE
  FEMALE             6             101
  MALE               8             109
D63V5, multiclass
                                clus
vv                               EPHA5 MUTATED EPHA5 WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D63V6, multiclass
    clus
vv   EPHA5 MUTATED EPHA5 WILD-TYPE
  T1             0               9
  T2             4              43
  T3             9             141
  T4             1              16
D63V7, multiclass
    clus
vv   EPHA5 MUTATED EPHA5 WILD-TYPE
  N0             9             125
  N1             3              41
  N2             2              44
D63V8, multiclass
     clus
vv    EPHA5 MUTATED EPHA5 WILD-TYPE
  M0             12             177
  M1              1              30
  M1A             0               1
D63V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA5 MUTATED     14    0
  EPHA5 WILD-TYPE  202    8
     clus
vv    EPHA5 MUTATED EPHA5 WILD-TYPE
  NO              0               8
  YES            14             202

Clustering(64) Variable = FLG MUTATION ANALYSIS
D64V1, survival
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
[1] "hr=" "2"  
D64V2, continuous
D64V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  FLG MUTATED     25    6
  FLG WILD-TYPE  129   62
        clus
vv       FLG MUTATED FLG WILD-TYPE
  COLON           25           129
  RECTUM           6            62
D64V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  FLG MUTATED     17   15
  FLG WILD-TYPE  100   92
        clus
vv       FLG MUTATED FLG WILD-TYPE
  FEMALE          15            92
  MALE            17           100
D64V5, multiclass
                                clus
vv                               FLG MUTATED FLG WILD-TYPE
  COLON ADENOCARCINOMA                    16           112
  COLON MUCINOUS ADENOCARCINOMA            8            16
  RECTAL ADENOCARCINOMA                    5            52
  RECTAL MUCINOUS ADENOCARCINOMA           0             8
D64V6, multiclass
    clus
vv   FLG MUTATED FLG WILD-TYPE
  T1           2             7
  T2           7            40
  T3          19           131
  T4           4            13
D64V7, multiclass
    clus
vv   FLG MUTATED FLG WILD-TYPE
  N0          24           110
  N1           4            40
  N2           4            42
D64V8, multiclass
     clus
vv    FLG MUTATED FLG WILD-TYPE
  M0           28           161
  M1            2            29
  M1A           0             1
D64V9, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  FLG MUTATED     32    0
  FLG WILD-TYPE  184    8
     clus
vv    FLG MUTATED FLG WILD-TYPE
  NO            0             8
  YES          32           184

Clustering(65) Variable = ODZ1 MUTATION ANALYSIS
D65V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED"   "ODZ1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "ODZ1 MUTATED"   "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" "ODZ1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED"   "ODZ1 MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
  "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED"   "ODZ1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "ODZ1 MUTATED"   "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" "ODZ1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED"   "ODZ1 MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
  "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED"   "ODZ1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "ODZ1 MUTATED"   "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" "ODZ1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED"   "ODZ1 MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
  "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
[1] "hr=" "5"  
D65V2, continuous
D65V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ODZ1 MUTATED     16    5
  ODZ1 WILD-TYPE  138   63
        clus
vv       ODZ1 MUTATED ODZ1 WILD-TYPE
  COLON            16            138
  RECTUM            5             63
D65V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ODZ1 MUTATED      3   19
  ODZ1 WILD-TYPE  114   88
        clus
vv       ODZ1 MUTATED ODZ1 WILD-TYPE
  FEMALE           19             88
  MALE              3            114
D65V5, multiclass
                                clus
vv                               ODZ1 MUTATED ODZ1 WILD-TYPE
  COLON ADENOCARCINOMA                      9            119
  COLON MUCINOUS ADENOCARCINOMA             6             18
  RECTAL ADENOCARCINOMA                     3             54
  RECTAL MUCINOUS ADENOCARCINOMA            1              7
D65V6, multiclass
    clus
vv   ODZ1 MUTATED ODZ1 WILD-TYPE
  T1            1              8
  T2            4             43
  T3           15            135
  T4            2             15
D65V7, multiclass
    clus
vv   ODZ1 MUTATED ODZ1 WILD-TYPE
  N0           13            121
  N1            4             40
  N2            5             41
D65V8, multiclass
     clus
vv    ODZ1 MUTATED ODZ1 WILD-TYPE
  M0            19            170
  M1             2             29
  M1A            0              1
D65V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ODZ1 MUTATED     22    0
  ODZ1 WILD-TYPE  194    8
     clus
vv    ODZ1 MUTATED ODZ1 WILD-TYPE
  NO             0              8
  YES           22            194

Clustering(66) Variable = DOCK2 MUTATION ANALYSIS
D66V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
[1] "hr=" "1.7"
D66V2, continuous
D66V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DOCK2 MUTATED     16    5
  DOCK2 WILD-TYPE  138   63
        clus
vv       DOCK2 MUTATED DOCK2 WILD-TYPE
  COLON             16             138
  RECTUM             5              63
D66V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DOCK2 MUTATED     11   10
  DOCK2 WILD-TYPE  106   97
        clus
vv       DOCK2 MUTATED DOCK2 WILD-TYPE
  FEMALE            10              97
  MALE              11             106
D66V5, multiclass
                                clus
vv                               DOCK2 MUTATED DOCK2 WILD-TYPE
  COLON ADENOCARCINOMA                      11             117
  COLON MUCINOUS ADENOCARCINOMA              4              20
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D66V6, multiclass
    clus
vv   DOCK2 MUTATED DOCK2 WILD-TYPE
  T1             1               8
  T2             4              43
  T3            12             138
  T4             4              13
D66V7, multiclass
    clus
vv   DOCK2 MUTATED DOCK2 WILD-TYPE
  N0            16             118
  N1             2              42
  N2             3              43
D66V8, multiclass
     clus
vv    DOCK2 MUTATED DOCK2 WILD-TYPE
  M0             20             169
  M1              0              31
  M1A             0               1
D66V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DOCK2 MUTATED     21    0
  DOCK2 WILD-TYPE  195    8
     clus
vv    DOCK2 MUTATED DOCK2 WILD-TYPE
  NO              0               8
  YES            21             195

Clustering(67) Variable = GUCY1A3 MUTATION ANALYSIS
D67V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
[1] "hr=" "2.6"
D67V2, continuous
D67V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  GUCY1A3 MUTATED     10    2
  GUCY1A3 WILD-TYPE  144   66
        clus
vv       GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  COLON               10               144
  RECTUM               2                66
D67V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  GUCY1A3 MUTATED      7    5
  GUCY1A3 WILD-TYPE  110  102
        clus
vv       GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  FEMALE               5               102
  MALE                 7               110
D67V5, multiclass
                                clus
vv                               GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  COLON ADENOCARCINOMA                         6               122
  COLON MUCINOUS ADENOCARCINOMA                4                20
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D67V6, multiclass
    clus
vv   GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  T1               0                 9
  T2               2                45
  T3               7               143
  T4               3                14
D67V7, multiclass
    clus
vv   GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  N0               7               127
  N1               2                42
  N2               3                43
D67V8, multiclass
     clus
vv    GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  M0               11               178
  M1                0                31
  M1A               0                 1
D67V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  GUCY1A3 MUTATED     12    0
  GUCY1A3 WILD-TYPE  204    8
     clus
vv    GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  NO                0                 8
  YES              12               204

Clustering(68) Variable = CDH8 MUTATION ANALYSIS
D68V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE"   "CDH8 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CDH8 WILD-TYPE"   "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE"   "CDH8 MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE"   "CDH8 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CDH8 WILD-TYPE"   "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE"   "CDH8 MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE"   "CDH8 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CDH8 WILD-TYPE"   "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE"   "CDH8 MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
[1] "hr=" "2.1"
D68V2, continuous
D68V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH8 MUTATED     10    4
  CDH8 WILD-TYPE  144   64
        clus
vv       CDH8 MUTATED CDH8 WILD-TYPE
  COLON            10            144
  RECTUM            4             64
D68V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH8 MUTATED      7    7
  CDH8 WILD-TYPE  110  100
        clus
vv       CDH8 MUTATED CDH8 WILD-TYPE
  FEMALE            7            100
  MALE              7            110
D68V5, multiclass
                                clus
vv                               CDH8 MUTATED CDH8 WILD-TYPE
  COLON ADENOCARCINOMA                      9            119
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     4             53
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D68V6, multiclass
    clus
vv   CDH8 MUTATED CDH8 WILD-TYPE
  T1            0              9
  T2            4             43
  T3            9            141
  T4            1             16
D68V7, multiclass
    clus
vv   CDH8 MUTATED CDH8 WILD-TYPE
  N0            9            125
  N1            2             42
  N2            3             43
D68V8, multiclass
     clus
vv    CDH8 MUTATED CDH8 WILD-TYPE
  M0            10            179
  M1             3             28
  M1A            0              1
D68V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH8 MUTATED     14    0
  CDH8 WILD-TYPE  202    8
     clus
vv    CDH8 MUTATED CDH8 WILD-TYPE
  NO             0              8
  YES           14            202

Clustering(69) Variable = MYO1B MUTATION ANALYSIS
D69V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
  "MYO1B MUTATED" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE"   "MYO1B MUTATED" "MYO1B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE"   "MYO1B MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE"   "MYO1B MUTATED" "MYO1B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MYO1B WILD-TYPE"   "MYO1B MUTATED" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MYO1B MUTATED" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "MYO1B MUTATED" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
  "MYO1B MUTATED" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE"   "MYO1B MUTATED" "MYO1B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE"   "MYO1B MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE"   "MYO1B MUTATED" "MYO1B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MYO1B WILD-TYPE"   "MYO1B MUTATED" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MYO1B MUTATED" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "MYO1B MUTATED" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
  "MYO1B MUTATED" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE"   "MYO1B MUTATED" "MYO1B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE"   "MYO1B MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE"   "MYO1B MUTATED" "MYO1B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MYO1B WILD-TYPE"   "MYO1B MUTATED" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MYO1B MUTATED" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "MYO1B MUTATED" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
[1] "hr="     "7.3e+07"
D69V2, continuous
D69V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYO1B MUTATED      9    4
  MYO1B WILD-TYPE  145   64
        clus
vv       MYO1B MUTATED MYO1B WILD-TYPE
  COLON              9             145
  RECTUM             4              64
D69V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYO1B MUTATED      6    7
  MYO1B WILD-TYPE  111  100
        clus
vv       MYO1B MUTATED MYO1B WILD-TYPE
  FEMALE             7             100
  MALE               6             111
D69V5, multiclass
                                clus
vv                               MYO1B MUTATED MYO1B WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D69V6, multiclass
    clus
vv   MYO1B MUTATED MYO1B WILD-TYPE
  T1             1               8
  T2             3              44
  T3             8             142
  T4             1              16
D69V7, multiclass
    clus
vv   MYO1B MUTATED MYO1B WILD-TYPE
  N0            10             124
  N1             1              43
  N2             2              44
D69V8, multiclass
     clus
vv    MYO1B MUTATED MYO1B WILD-TYPE
  M0             12             177
  M1              0              31
  M1A             0               1
D69V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYO1B MUTATED     13    0
  MYO1B WILD-TYPE  203    8
     clus
vv    MYO1B MUTATED MYO1B WILD-TYPE
  NO              0               8
  YES            13             203

Clustering(70) Variable = OPCML MUTATION ANALYSIS
D70V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE"   "OPCML MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE"   "OPCML MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE"   "OPCML MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OPCML MUTATED" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OPCML WILD-TYPE"   "OPCML MUTATED" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OPCML MUTATED" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OPCML WILD-TYPE"   "OPCML MUTATED"   "OPCML MUTATED" "OPCML WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE"   "OPCML MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE"   "OPCML MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE"   "OPCML MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OPCML MUTATED" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OPCML WILD-TYPE"   "OPCML MUTATED" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OPCML MUTATED" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OPCML WILD-TYPE"   "OPCML MUTATED"   "OPCML MUTATED" "OPCML WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE"   "OPCML MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE"   "OPCML MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE"   "OPCML MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OPCML MUTATED" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OPCML WILD-TYPE"   "OPCML MUTATED" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OPCML MUTATED" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OPCML WILD-TYPE"   "OPCML MUTATED"   "OPCML MUTATED" "OPCML WILD-TYPE" 
[1] "hr="     "7.4e+07"
D70V2, continuous
D70V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OPCML MUTATED      4    6
  OPCML WILD-TYPE  150   62
        clus
vv       OPCML MUTATED OPCML WILD-TYPE
  COLON              4             150
  RECTUM             6              62
D70V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OPCML MUTATED      5    5
  OPCML WILD-TYPE  112  102
        clus
vv       OPCML MUTATED OPCML WILD-TYPE
  FEMALE             5             102
  MALE               5             112
D70V5, multiclass
                                clus
vv                               OPCML MUTATED OPCML WILD-TYPE
  COLON ADENOCARCINOMA                       3             125
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      6              51
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D70V6, multiclass
    clus
vv   OPCML MUTATED OPCML WILD-TYPE
  T1             0               9
  T2             4              43
  T3             5             145
  T4             1              16
D70V7, multiclass
    clus
vv   OPCML MUTATED OPCML WILD-TYPE
  N0             6             128
  N1             2              42
  N2             2              44
D70V8, multiclass
     clus
vv    OPCML MUTATED OPCML WILD-TYPE
  M0              8             181
  M1              1              30
  M1A             0               1
D70V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OPCML MUTATED     10    0
  OPCML WILD-TYPE  206    8
     clus
vv    OPCML MUTATED OPCML WILD-TYPE
  NO              0               8
  YES            10             206

Clustering(71) Variable = DKK2 MUTATION ANALYSIS
D71V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE"   "DKK2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE"   "DKK2 MUTATED" "DKK2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DKK2 WILD-TYPE"   "DKK2 MUTATED" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE"   "DKK2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE"   "DKK2 MUTATED" "DKK2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DKK2 WILD-TYPE"   "DKK2 MUTATED" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE"   "DKK2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE"   "DKK2 MUTATED" "DKK2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DKK2 WILD-TYPE"   "DKK2 MUTATED" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
[1] "hr="     "9200000"
D71V2, continuous
D71V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DKK2 MUTATED      5    1
  DKK2 WILD-TYPE  149   67
        clus
vv       DKK2 MUTATED DKK2 WILD-TYPE
  COLON             5            149
  RECTUM            1             67
D71V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DKK2 MUTATED      3    3
  DKK2 WILD-TYPE  114  104
        clus
vv       DKK2 MUTATED DKK2 WILD-TYPE
  FEMALE            3            104
  MALE              3            114
D71V5, multiclass
                                clus
vv                               DKK2 MUTATED DKK2 WILD-TYPE
  COLON ADENOCARCINOMA                      4            124
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D71V6, multiclass
    clus
vv   DKK2 MUTATED DKK2 WILD-TYPE
  T1            0              9
  T2            0             47
  T3            5            145
  T4            0             17
D71V7, multiclass
    clus
vv   DKK2 MUTATED DKK2 WILD-TYPE
  N0            3            131
  N1            3             41
  N2            0             46
D71V8, multiclass
     clus
vv    DKK2 MUTATED DKK2 WILD-TYPE
  M0             5            184
  M1             1             30
  M1A            0              1
D71V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DKK2 MUTATED      5    1
  DKK2 WILD-TYPE  211    7
     clus
vv    DKK2 MUTATED DKK2 WILD-TYPE
  NO             1              7
  YES            5            211

Clustering(72) Variable = GRIK3 MUTATION ANALYSIS
D72V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE"   "GRIK3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE"   "GRIK3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE"   "GRIK3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
[1] "hr=" "1.4"
D72V2, continuous
D72V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRIK3 MUTATED     14    3
  GRIK3 WILD-TYPE  140   65
        clus
vv       GRIK3 MUTATED GRIK3 WILD-TYPE
  COLON             14             140
  RECTUM             3              65
D72V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRIK3 MUTATED     12    5
  GRIK3 WILD-TYPE  105  102
        clus
vv       GRIK3 MUTATED GRIK3 WILD-TYPE
  FEMALE             5             102
  MALE              12             105
D72V5, multiclass
                                clus
vv                               GRIK3 MUTATED GRIK3 WILD-TYPE
  COLON ADENOCARCINOMA                      11             117
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D72V6, multiclass
    clus
vv   GRIK3 MUTATED GRIK3 WILD-TYPE
  T1             0               9
  T2             5              42
  T3            11             139
  T4             1              16
D72V7, multiclass
    clus
vv   GRIK3 MUTATED GRIK3 WILD-TYPE
  N0            14             120
  N1             2              42
  N2             1              45
D72V8, multiclass
     clus
vv    GRIK3 MUTATED GRIK3 WILD-TYPE
  M0             14             175
  M1              2              29
  M1A             0               1
D72V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRIK3 MUTATED     17    0
  GRIK3 WILD-TYPE  199    8
     clus
vv    GRIK3 MUTATED GRIK3 WILD-TYPE
  NO              0               8
  YES            17             199

Clustering(73) Variable = ARID2 MUTATION ANALYSIS
D73V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ARID2 WILD-TYPE"   "ARID2 MUTATED"   "ARID2 MUTATED" "ARID2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ARID2 WILD-TYPE"   "ARID2 MUTATED"   "ARID2 MUTATED" "ARID2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ARID2 WILD-TYPE"   "ARID2 MUTATED"   "ARID2 MUTATED" "ARID2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" 
[1] "hr=" "1.1"
D73V2, continuous
D73V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ARID2 MUTATED     11    4
  ARID2 WILD-TYPE  143   64
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  COLON             11             143
  RECTUM             4              64
D73V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ARID2 MUTATED      7    8
  ARID2 WILD-TYPE  110   99
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  FEMALE             8              99
  MALE               7             110
D73V5, multiclass
                                clus
vv                               ARID2 MUTATED ARID2 WILD-TYPE
  COLON ADENOCARCINOMA                       9             119
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D73V6, multiclass
    clus
vv   ARID2 MUTATED ARID2 WILD-TYPE
  T1             0               9
  T2             2              45
  T3            10             140
  T4             3              14
D73V7, multiclass
    clus
vv   ARID2 MUTATED ARID2 WILD-TYPE
  N0            11             123
  N1             2              42
  N2             2              44
D73V8, multiclass
     clus
vv    ARID2 MUTATED ARID2 WILD-TYPE
  M0             12             177
  M1              2              29
  M1A             0               1
D73V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ARID2 MUTATED     15    0
  ARID2 WILD-TYPE  201    8
     clus
vv    ARID2 MUTATED ARID2 WILD-TYPE
  NO              0               8
  YES            15             201

Clustering(74) Variable = CDH10 MUTATION ANALYSIS
D74V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
[1] "hr=" "1.3"
D74V2, continuous
D74V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH10 MUTATED     12    2
  CDH10 WILD-TYPE  142   66
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  COLON             12             142
  RECTUM             2              66
D74V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH10 MUTATED      9    5
  CDH10 WILD-TYPE  108  102
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  FEMALE             5             102
  MALE               9             108
D74V5, multiclass
                                clus
vv                               CDH10 MUTATED CDH10 WILD-TYPE
  COLON ADENOCARCINOMA                       9             119
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D74V6, multiclass
    clus
vv   CDH10 MUTATED CDH10 WILD-TYPE
  T1             0               9
  T2             4              43
  T3             8             142
  T4             2              15
D74V7, multiclass
    clus
vv   CDH10 MUTATED CDH10 WILD-TYPE
  N0            11             123
  N1             2              42
  N2             1              45
D74V8, multiclass
     clus
vv    CDH10 MUTATED CDH10 WILD-TYPE
  M0             12             177
  M1              1              30
  M1A             0               1
D74V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH10 MUTATED     14    0
  CDH10 WILD-TYPE  202    8
     clus
vv    CDH10 MUTATED CDH10 WILD-TYPE
  NO              0               8
  YES            14             202

Clustering(75) Variable = CNBD1 MUTATION ANALYSIS
D75V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D75V2, continuous
D75V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNBD1 MUTATED      6    1
  CNBD1 WILD-TYPE  148   67
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  COLON              6             148
  RECTUM             1              67
D75V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNBD1 MUTATED      3    4
  CNBD1 WILD-TYPE  114  103
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  FEMALE             4             103
  MALE               3             114
D75V5, multiclass
                                clus
vv                               CNBD1 MUTATED CNBD1 WILD-TYPE
  COLON ADENOCARCINOMA                       5             123
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D75V6, multiclass
    clus
vv   CNBD1 MUTATED CNBD1 WILD-TYPE
  T1             0               9
  T2             1              46
  T3             5             145
  T4             1              16
D75V7, multiclass
    clus
vv   CNBD1 MUTATED CNBD1 WILD-TYPE
  N0             6             128
  N1             1              43
  N2             0              46
D75V8, multiclass
     clus
vv    CNBD1 MUTATED CNBD1 WILD-TYPE
  M0              7             182
  M1              0              31
  M1A             0               1
D75V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNBD1 MUTATED      7    0
  CNBD1 WILD-TYPE  209    8
     clus
vv    CNBD1 MUTATED CNBD1 WILD-TYPE
  NO              0               8
  YES             7             209

Clustering(76) Variable = LRRIQ3 MUTATION ANALYSIS
D76V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D76V2, continuous
D76V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRIQ3 MUTATED      7    3
  LRRIQ3 WILD-TYPE  147   65
        clus
vv       LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  COLON               7              147
  RECTUM              3               65
D76V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRIQ3 MUTATED      2    8
  LRRIQ3 WILD-TYPE  115   99
        clus
vv       LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  FEMALE              8               99
  MALE                2              115
D76V5, multiclass
                                clus
vv                               LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  COLON ADENOCARCINOMA                        6              122
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D76V6, multiclass
    clus
vv   LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  T1              1                8
  T2              2               45
  T3              5              145
  T4              2               15
D76V7, multiclass
    clus
vv   LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  N0              6              128
  N1              2               42
  N2              2               44
D76V8, multiclass
     clus
vv    LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  M0               9              180
  M1               1               30
  M1A              0                1
D76V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRIQ3 MUTATED     10    0
  LRRIQ3 WILD-TYPE  206    8
     clus
vv    LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  NO               0                8
  YES             10              206

Clustering(77) Variable = TRPC4 MUTATION ANALYSIS
D77V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE"   "TRPC4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE"   "TRPC4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE"   "TRPC4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
[1] "hr=" "1.8"
D77V2, continuous
D77V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPC4 MUTATED     12    5
  TRPC4 WILD-TYPE  142   63
        clus
vv       TRPC4 MUTATED TRPC4 WILD-TYPE
  COLON             12             142
  RECTUM             5              63
D77V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPC4 MUTATED      7   10
  TRPC4 WILD-TYPE  110   97
        clus
vv       TRPC4 MUTATED TRPC4 WILD-TYPE
  FEMALE            10              97
  MALE               7             110
D77V5, multiclass
                                clus
vv                               TRPC4 MUTATED TRPC4 WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              5              19
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D77V6, multiclass
    clus
vv   TRPC4 MUTATED TRPC4 WILD-TYPE
  T1             2               7
  T2             1              46
  T3            10             140
  T4             4              13
D77V7, multiclass
    clus
vv   TRPC4 MUTATED TRPC4 WILD-TYPE
  N0            12             122
  N1             5              39
  N2             0              46
D77V8, multiclass
     clus
vv    TRPC4 MUTATED TRPC4 WILD-TYPE
  M0             16             173
  M1              1              30
  M1A             0               1
D77V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPC4 MUTATED     17    0
  TRPC4 WILD-TYPE  199    8
     clus
vv    TRPC4 MUTATED TRPC4 WILD-TYPE
  NO              0               8
  YES            17             199

Clustering(78) Variable = CDH9 MUTATION ANALYSIS
D78V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
[1] "hr=" "4"  
D78V2, continuous
D78V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH9 MUTATED      9    5
  CDH9 WILD-TYPE  145   63
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  COLON             9            145
  RECTUM            5             63
D78V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH9 MUTATED      9    6
  CDH9 WILD-TYPE  108  101
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  FEMALE            6            101
  MALE              9            108
D78V5, multiclass
                                clus
vv                               CDH9 MUTATED CDH9 WILD-TYPE
  COLON ADENOCARCINOMA                      7            121
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     5             52
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D78V6, multiclass
    clus
vv   CDH9 MUTATED CDH9 WILD-TYPE
  T1            2              7
  T2            2             45
  T3            9            141
  T4            2             15
D78V7, multiclass
    clus
vv   CDH9 MUTATED CDH9 WILD-TYPE
  N0           14            120
  N1            1             43
  N2            0             46
D78V8, multiclass
     clus
vv    CDH9 MUTATED CDH9 WILD-TYPE
  M0            12            177
  M1             1             30
  M1A            0              1
D78V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH9 MUTATED     15    0
  CDH9 WILD-TYPE  201    8
     clus
vv    CDH9 MUTATED CDH9 WILD-TYPE
  NO             0              8
  YES           15            201

Clustering(79) Variable = FAM133A MUTATION ANALYSIS
D79V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE"   "FAM133A MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "FAM133A MUTATED" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE"   "FAM133A MUTATED" "FAM133A WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"FAM133A WILD-TYPE"   "FAM133A MUTATED" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE"   "FAM133A MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "FAM133A MUTATED" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE"   "FAM133A MUTATED" "FAM133A WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"FAM133A WILD-TYPE"   "FAM133A MUTATED" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE"   "FAM133A MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "FAM133A MUTATED" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE"   "FAM133A MUTATED" "FAM133A WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"FAM133A WILD-TYPE"   "FAM133A MUTATED" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
[1] "hr="     "2.6e+07"
D79V2, continuous
D79V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM133A MUTATED      5    2
  FAM133A WILD-TYPE  149   66
        clus
vv       FAM133A MUTATED FAM133A WILD-TYPE
  COLON                5               149
  RECTUM               2                66
D79V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM133A MUTATED      3    4
  FAM133A WILD-TYPE  114  103
        clus
vv       FAM133A MUTATED FAM133A WILD-TYPE
  FEMALE               4               103
  MALE                 3               114
D79V5, multiclass
                                clus
vv                               FAM133A MUTATED FAM133A WILD-TYPE
  COLON ADENOCARCINOMA                         5               123
  COLON MUCINOUS ADENOCARCINOMA                0                24
  RECTAL ADENOCARCINOMA                        1                56
  RECTAL MUCINOUS ADENOCARCINOMA               1                 7
D79V6, multiclass
    clus
vv   FAM133A MUTATED FAM133A WILD-TYPE
  T1               0                 9
  T2               2                45
  T3               4               146
  T4               1                16
D79V7, multiclass
    clus
vv   FAM133A MUTATED FAM133A WILD-TYPE
  N0               5               129
  N1               1                43
  N2               1                45
D79V8, multiclass
     clus
vv    FAM133A MUTATED FAM133A WILD-TYPE
  M0                5               184
  M1                1                30
  M1A               0                 1
D79V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM133A MUTATED      7    0
  FAM133A WILD-TYPE  209    8
     clus
vv    FAM133A MUTATED FAM133A WILD-TYPE
  NO                0                 8
  YES               7               209

Clustering(80) Variable = C16ORF45 MUTATION ANALYSIS
D80V1, survival
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE"   "C16ORF45 MUTATED" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"C16ORF45 WILD-TYPE"   "C16ORF45 MUTATED" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE"   "C16ORF45 MUTATED" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"C16ORF45 WILD-TYPE"   "C16ORF45 MUTATED" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE"   "C16ORF45 MUTATED" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"C16ORF45 WILD-TYPE"   "C16ORF45 MUTATED" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
[1] "Remove cluster labels:" "C16ORF45 MUTATED"      
clus
  C16ORF45 MUTATED C16ORF45 WILD-TYPE 
                 2                118 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3947 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3949         TCGA-AA-3952         TCGA-AA-3966 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3975         TCGA-AA-3977         TCGA-AA-3986 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01P         TCGA-AA-A01Q 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01R         TCGA-AA-A01S         TCGA-AA-A01T 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01V         TCGA-AA-A01X         TCGA-AA-A01Z 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A024         TCGA-AA-A029         TCGA-AA-A02F 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A02H         TCGA-AA-A02J         TCGA-AA-A02O 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AA-A02Y         TCGA-AA-A03F 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A03J         TCGA-AY-4070         TCGA-AY-4071 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AF-2689         TCGA-AF-2691         TCGA-AF-2692 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AF-3400         TCGA-AF-3913         TCGA-AG-3581 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3587 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3599         TCGA-AG-3726         TCGA-AG-3727 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3887         TCGA-AG-3892 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3894         TCGA-AG-3999 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-4001         TCGA-AG-4007         TCGA-AG-4008 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A008         TCGA-AG-A00C         TCGA-AG-A00H 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A00Y         TCGA-AG-A011         TCGA-AG-A014 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A015         TCGA-AG-A016         TCGA-AG-A01L 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A01W         TCGA-AG-A01Y         TCGA-AG-A020 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A025         TCGA-AG-A026         TCGA-AG-A02G 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A02N         TCGA-AG-A02X         TCGA-AG-A032 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A036 
"C16ORF45 WILD-TYPE" 
D80V2, continuous
D80V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C16ORF45 MUTATED      2    1
  C16ORF45 WILD-TYPE  152   67
        clus
vv       C16ORF45 MUTATED C16ORF45 WILD-TYPE
  COLON                 2                152
  RECTUM                1                 67
D80V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C16ORF45 MUTATED      2    1
  C16ORF45 WILD-TYPE  115  106
        clus
vv       C16ORF45 MUTATED C16ORF45 WILD-TYPE
  FEMALE                1                106
  MALE                  2                115
D80V5, multiclass
                                clus
vv                               C16ORF45 MUTATED C16ORF45 WILD-TYPE
  COLON ADENOCARCINOMA                          2                126
  COLON MUCINOUS ADENOCARCINOMA                 0                 24
  RECTAL ADENOCARCINOMA                         1                 56
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
D80V6, multiclass
    clus
vv   C16ORF45 MUTATED C16ORF45 WILD-TYPE
  T1                0                  9
  T2                1                 46
  T3                1                149
  T4                1                 16
D80V7, multiclass
    clus
vv   C16ORF45 MUTATED C16ORF45 WILD-TYPE
  N0                1                133
  N1                2                 42
  N2                0                 46
D80V8, multiclass
     clus
vv    C16ORF45 MUTATED C16ORF45 WILD-TYPE
  M0                 2                187
  M1                 0                 31
  M1A                1                  0
D80V9, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C16ORF45 MUTATED      3    0
  C16ORF45 WILD-TYPE  213    8
     clus
vv    C16ORF45 MUTATED C16ORF45 WILD-TYPE
  NO                 0                  8
  YES                3                213

Clustering(81) Variable = LPPR4 MUTATION ANALYSIS
D81V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
[1] "hr="     "9800000"
D81V2, continuous
D81V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LPPR4 MUTATED     11    2
  LPPR4 WILD-TYPE  143   66
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  COLON             11             143
  RECTUM             2              66
D81V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LPPR4 MUTATED      6    7
  LPPR4 WILD-TYPE  111  100
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  FEMALE             7             100
  MALE               6             111
D81V5, multiclass
                                clus
vv                               LPPR4 MUTATED LPPR4 WILD-TYPE
  COLON ADENOCARCINOMA                       9             119
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D81V6, multiclass
    clus
vv   LPPR4 MUTATED LPPR4 WILD-TYPE
  T1             2               7
  T2             3              44
  T3             7             143
  T4             1              16
D81V7, multiclass
    clus
vv   LPPR4 MUTATED LPPR4 WILD-TYPE
  N0             8             126
  N1             5              39
  N2             0              46
D81V8, multiclass
     clus
vv    LPPR4 MUTATED LPPR4 WILD-TYPE
  M0             11             178
  M1              1              30
  M1A             0               1
D81V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LPPR4 MUTATED     13    0
  LPPR4 WILD-TYPE  203    8
     clus
vv    LPPR4 MUTATED LPPR4 WILD-TYPE
  NO              0               8
  YES            13             203

Clustering(82) Variable = ADAM29 MUTATION ANALYSIS
D82V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE"   "ADAM29 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE"   "ADAM29 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
  "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
  "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE"   "ADAM29 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE"   "ADAM29 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
  "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
  "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE"   "ADAM29 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE"   "ADAM29 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
  "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
  "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
[1] "hr="     "7.8e+07"
D82V2, continuous
D82V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ADAM29 MUTATED     10    2
  ADAM29 WILD-TYPE  144   66
        clus
vv       ADAM29 MUTATED ADAM29 WILD-TYPE
  COLON              10              144
  RECTUM              2               66
D82V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ADAM29 MUTATED      3    9
  ADAM29 WILD-TYPE  114   98
        clus
vv       ADAM29 MUTATED ADAM29 WILD-TYPE
  FEMALE              9               98
  MALE                3              114
D82V5, multiclass
                                clus
vv                               ADAM29 MUTATED ADAM29 WILD-TYPE
  COLON ADENOCARCINOMA                        8              120
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D82V6, multiclass
    clus
vv   ADAM29 MUTATED ADAM29 WILD-TYPE
  T1              1                8
  T2              4               43
  T3              5              145
  T4              2               15
D82V7, multiclass
    clus
vv   ADAM29 MUTATED ADAM29 WILD-TYPE
  N0              9              125
  N1              2               42
  N2              1               45
D82V8, multiclass
     clus
vv    ADAM29 MUTATED ADAM29 WILD-TYPE
  M0               9              180
  M1               1               30
  M1A              1                0
D82V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ADAM29 MUTATED     12    0
  ADAM29 WILD-TYPE  204    8
     clus
vv    ADAM29 MUTATED ADAM29 WILD-TYPE
  NO               0                8
  YES             12              204

Clustering(83) Variable = CASP8 MUTATION ANALYSIS
D83V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CASP8 WILD-TYPE"   "CASP8 MUTATED"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CASP8 MUTATED" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CASP8 WILD-TYPE"   "CASP8 MUTATED"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CASP8 MUTATED" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CASP8 WILD-TYPE"   "CASP8 MUTATED"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CASP8 MUTATED" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D83V2, continuous
D83V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CASP8 MUTATED     10    0
  CASP8 WILD-TYPE  144   68
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  COLON             10             144
  RECTUM             0              68
D83V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CASP8 MUTATED      5    5
  CASP8 WILD-TYPE  112  102
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  FEMALE             5             102
  MALE               5             112
D83V5, multiclass
                                clus
vv                               CASP8 MUTATED CASP8 WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      0              57
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D83V6, multiclass
    clus
vv   CASP8 MUTATED CASP8 WILD-TYPE
  T1             0               9
  T2             2              45
  T3             5             145
  T4             3              14
D83V7, multiclass
    clus
vv   CASP8 MUTATED CASP8 WILD-TYPE
  N0             9             125
  N1             1              43
  N2             0              46
D83V8, multiclass
     clus
vv    CASP8 MUTATED CASP8 WILD-TYPE
  M0             10             179
  M1              0              31
  M1A             0               1
D83V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CASP8 MUTATED     10    0
  CASP8 WILD-TYPE  206    8
     clus
vv    CASP8 MUTATED CASP8 WILD-TYPE
  NO              0               8
  YES            10             206

Clustering(84) Variable = CTNNB1 MUTATION ANALYSIS
D84V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
  "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
  "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
  "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
[1] "hr=" "1.8"
D84V2, continuous
D84V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CTNNB1 MUTATED      7    4
  CTNNB1 WILD-TYPE  147   64
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  COLON               7              147
  RECTUM              4               64
D84V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CTNNB1 MUTATED      4    7
  CTNNB1 WILD-TYPE  113  100
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  FEMALE              7              100
  MALE                4              113
D84V5, multiclass
                                clus
vv                               CTNNB1 MUTATED CTNNB1 WILD-TYPE
  COLON ADENOCARCINOMA                        6              122
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              1                7
D84V6, multiclass
    clus
vv   CTNNB1 MUTATED CTNNB1 WILD-TYPE
  T1              1                8
  T2              0               47
  T3              9              141
  T4              1               16
D84V7, multiclass
    clus
vv   CTNNB1 MUTATED CTNNB1 WILD-TYPE
  N0              6              128
  N1              4               40
  N2              1               45
D84V8, multiclass
     clus
vv    CTNNB1 MUTATED CTNNB1 WILD-TYPE
  M0              10              179
  M1               1               30
  M1A              0                1
D84V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CTNNB1 MUTATED     10    1
  CTNNB1 WILD-TYPE  206    7
     clus
vv    CTNNB1 MUTATED CTNNB1 WILD-TYPE
  NO               1                7
  YES             10              206

Clustering(85) Variable = EDNRB MUTATION ANALYSIS
D85V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
[1] "hr="     "2.7e+07"
D85V2, continuous
D85V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EDNRB MUTATED      7    4
  EDNRB WILD-TYPE  147   64
        clus
vv       EDNRB MUTATED EDNRB WILD-TYPE
  COLON              7             147
  RECTUM             4              64
D85V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EDNRB MUTATED      7    4
  EDNRB WILD-TYPE  110  103
        clus
vv       EDNRB MUTATED EDNRB WILD-TYPE
  FEMALE             4             103
  MALE               7             110
D85V5, multiclass
                                clus
vv                               EDNRB MUTATED EDNRB WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D85V6, multiclass
    clus
vv   EDNRB MUTATED EDNRB WILD-TYPE
  T1             0               9
  T2             1              46
  T3             7             143
  T4             3              14
D85V7, multiclass
    clus
vv   EDNRB MUTATED EDNRB WILD-TYPE
  N0             8             126
  N1             3              41
  N2             0              46
D85V8, multiclass
     clus
vv    EDNRB MUTATED EDNRB WILD-TYPE
  M0             11             178
  M1              0              31
  M1A             0               1
D85V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EDNRB MUTATED     11    0
  EDNRB WILD-TYPE  205    8
     clus
vv    EDNRB MUTATED EDNRB WILD-TYPE
  NO              0               8
  YES            11             205

Clustering(86) Variable = CRTC1 MUTATION ANALYSIS
D86V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE"   "CRTC1 MUTATED" "CRTC1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CRTC1 WILD-TYPE"   "CRTC1 MUTATED" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE"   "CRTC1 MUTATED" "CRTC1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CRTC1 WILD-TYPE"   "CRTC1 MUTATED" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE"   "CRTC1 MUTATED" "CRTC1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CRTC1 WILD-TYPE"   "CRTC1 MUTATED" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
[1] "Remove cluster labels:" "CRTC1 MUTATED"         
clus
  CRTC1 MUTATED CRTC1 WILD-TYPE 
              2             118 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3949      TCGA-AA-3952 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977      TCGA-AA-3986 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024      TCGA-AA-A029 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02O 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689      TCGA-AF-2691 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N      TCGA-AG-A02X 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A032      TCGA-AG-A036 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
D86V2, continuous
D86V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CRTC1 MUTATED      5    1
  CRTC1 WILD-TYPE  149   67
        clus
vv       CRTC1 MUTATED CRTC1 WILD-TYPE
  COLON              5             149
  RECTUM             1              67
D86V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CRTC1 MUTATED      2    4
  CRTC1 WILD-TYPE  115  103
        clus
vv       CRTC1 MUTATED CRTC1 WILD-TYPE
  FEMALE             4             103
  MALE               2             115
D86V5, multiclass
                                clus
vv                               CRTC1 MUTATED CRTC1 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D86V6, multiclass
    clus
vv   CRTC1 MUTATED CRTC1 WILD-TYPE
  T1             1               8
  T2             1              46
  T3             3             147
  T4             1              16
D86V7, multiclass
    clus
vv   CRTC1 MUTATED CRTC1 WILD-TYPE
  N0             5             129
  N1             1              43
  N2             0              46
D86V8, multiclass
     clus
vv    CRTC1 MUTATED CRTC1 WILD-TYPE
  M0              6             183
  M1              0              31
  M1A             0               1
D86V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CRTC1 MUTATED      6    0
  CRTC1 WILD-TYPE  210    8
     clus
vv    CRTC1 MUTATED CRTC1 WILD-TYPE
  NO              0               8
  YES             6             210

Clustering(87) Variable = EPHA3 MUTATION ANALYSIS
D87V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE"   "EPHA3 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE"   "EPHA3 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"EPHA3 WILD-TYPE"   "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"EPHA3 WILD-TYPE"   "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE"   "EPHA3 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE"   "EPHA3 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"EPHA3 WILD-TYPE"   "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"EPHA3 WILD-TYPE"   "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE"   "EPHA3 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE"   "EPHA3 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"EPHA3 WILD-TYPE"   "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"EPHA3 WILD-TYPE"   "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D87V2, continuous
D87V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA3 MUTATED     13    3
  EPHA3 WILD-TYPE  141   65
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  COLON             13             141
  RECTUM             3              65
D87V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA3 MUTATED      6   10
  EPHA3 WILD-TYPE  111   97
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  FEMALE            10              97
  MALE               6             111
D87V5, multiclass
                                clus
vv                               EPHA3 MUTATED EPHA3 WILD-TYPE
  COLON ADENOCARCINOMA                       9             119
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D87V6, multiclass
    clus
vv   EPHA3 MUTATED EPHA3 WILD-TYPE
  T1             1               8
  T2             1              46
  T3            12             138
  T4             2              15
D87V7, multiclass
    clus
vv   EPHA3 MUTATED EPHA3 WILD-TYPE
  N0             9             125
  N1             2              42
  N2             5              41
D87V8, multiclass
     clus
vv    EPHA3 MUTATED EPHA3 WILD-TYPE
  M0             14             175
  M1              2              29
  M1A             0               1
D87V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA3 MUTATED     16    0
  EPHA3 WILD-TYPE  200    8
     clus
vv    EPHA3 MUTATED EPHA3 WILD-TYPE
  NO              0               8
  YES            16             200

Clustering(88) Variable = GPC6 MUTATION ANALYSIS
D88V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE"   "GPC6 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
  "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE"   "GPC6 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
  "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE"   "GPC6 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
  "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D88V2, continuous
D88V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GPC6 MUTATED      7    3
  GPC6 WILD-TYPE  147   65
        clus
vv       GPC6 MUTATED GPC6 WILD-TYPE
  COLON             7            147
  RECTUM            3             65
D88V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GPC6 MUTATED      5    5
  GPC6 WILD-TYPE  112  102
        clus
vv       GPC6 MUTATED GPC6 WILD-TYPE
  FEMALE            5            102
  MALE              5            112
D88V5, multiclass
                                clus
vv                               GPC6 MUTATED GPC6 WILD-TYPE
  COLON ADENOCARCINOMA                      4            124
  COLON MUCINOUS ADENOCARCINOMA             3             21
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D88V6, multiclass
    clus
vv   GPC6 MUTATED GPC6 WILD-TYPE
  T1            1              8
  T2            1             46
  T3            5            145
  T4            3             14
D88V7, multiclass
    clus
vv   GPC6 MUTATED GPC6 WILD-TYPE
  N0            6            128
  N1            2             42
  N2            2             44
D88V8, multiclass
     clus
vv    GPC6 MUTATED GPC6 WILD-TYPE
  M0             8            181
  M1             2             29
  M1A            0              1
D88V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GPC6 MUTATED     10    0
  GPC6 WILD-TYPE  206    8
     clus
vv    GPC6 MUTATED GPC6 WILD-TYPE
  NO             0              8
  YES           10            206

Clustering(89) Variable = TLL1 MUTATION ANALYSIS
D89V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
[1] "hr=" "2.2"
D89V2, continuous
D89V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TLL1 MUTATED     11    4
  TLL1 WILD-TYPE  143   64
        clus
vv       TLL1 MUTATED TLL1 WILD-TYPE
  COLON            11            143
  RECTUM            4             64
D89V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TLL1 MUTATED      9    6
  TLL1 WILD-TYPE  108  101
        clus
vv       TLL1 MUTATED TLL1 WILD-TYPE
  FEMALE            6            101
  MALE              9            108
D89V5, multiclass
                                clus
vv                               TLL1 MUTATED TLL1 WILD-TYPE
  COLON ADENOCARCINOMA                      7            121
  COLON MUCINOUS ADENOCARCINOMA             4             20
  RECTAL ADENOCARCINOMA                     3             54
  RECTAL MUCINOUS ADENOCARCINOMA            1              7
D89V6, multiclass
    clus
vv   TLL1 MUTATED TLL1 WILD-TYPE
  T1            0              9
  T2            2             45
  T3           11            139
  T4            2             15
D89V7, multiclass
    clus
vv   TLL1 MUTATED TLL1 WILD-TYPE
  N0           10            124
  N1            2             42
  N2            3             43
D89V8, multiclass
     clus
vv    TLL1 MUTATED TLL1 WILD-TYPE
  M0            15            174
  M1             0             31
  M1A            0              1
D89V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TLL1 MUTATED     14    1
  TLL1 WILD-TYPE  202    7
     clus
vv    TLL1 MUTATED TLL1 WILD-TYPE
  NO             1              7
  YES           14            202

Clustering(90) Variable = CASP14 MUTATION ANALYSIS
D90V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE"   "CASP14 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE"   "CASP14 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE"   "CASP14 MUTATED" "CASP14 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE"   "CASP14 MUTATED" "CASP14 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "CASP14 MUTATED" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE"   "CASP14 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE"   "CASP14 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE"   "CASP14 MUTATED" "CASP14 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE"   "CASP14 MUTATED" "CASP14 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "CASP14 MUTATED" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE"   "CASP14 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE"   "CASP14 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE"   "CASP14 MUTATED" "CASP14 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE"   "CASP14 MUTATED" "CASP14 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "CASP14 MUTATED" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
[1] "hr=" "2.1"
D90V2, continuous
D90V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CASP14 MUTATED      4    4
  CASP14 WILD-TYPE  150   64
        clus
vv       CASP14 MUTATED CASP14 WILD-TYPE
  COLON               4              150
  RECTUM              4               64
D90V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CASP14 MUTATED      4    4
  CASP14 WILD-TYPE  113  103
        clus
vv       CASP14 MUTATED CASP14 WILD-TYPE
  FEMALE              4              103
  MALE                4              113
D90V5, multiclass
                                clus
vv                               CASP14 MUTATED CASP14 WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D90V6, multiclass
    clus
vv   CASP14 MUTATED CASP14 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              5              145
  T4              1               16
D90V7, multiclass
    clus
vv   CASP14 MUTATED CASP14 WILD-TYPE
  N0              2              132
  N1              3               41
  N2              3               43
D90V8, multiclass
     clus
vv    CASP14 MUTATED CASP14 WILD-TYPE
  M0               5              184
  M1               2               29
  M1A              0                1
D90V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CASP14 MUTATED      8    0
  CASP14 WILD-TYPE  208    8
     clus
vv    CASP14 MUTATED CASP14 WILD-TYPE
  NO               0                8
  YES              8              208

Clustering(91) Variable = PTPRM MUTATION ANALYSIS
D91V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "PTPRM MUTATED" "PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PTPRM WILD-TYPE"   "PTPRM MUTATED"   "PTPRM MUTATED"   "PTPRM MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "PTPRM MUTATED" "PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PTPRM WILD-TYPE"   "PTPRM MUTATED"   "PTPRM MUTATED"   "PTPRM MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "PTPRM MUTATED" "PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PTPRM WILD-TYPE"   "PTPRM MUTATED"   "PTPRM MUTATED"   "PTPRM MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" 
[1] "hr=" "2.1"
D91V2, continuous
D91V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PTPRM MUTATED     14    6
  PTPRM WILD-TYPE  140   62
        clus
vv       PTPRM MUTATED PTPRM WILD-TYPE
  COLON             14             140
  RECTUM             6              62
D91V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PTPRM MUTATED     12    8
  PTPRM WILD-TYPE  105   99
        clus
vv       PTPRM MUTATED PTPRM WILD-TYPE
  FEMALE             8              99
  MALE              12             105
D91V5, multiclass
                                clus
vv                               PTPRM MUTATED PTPRM WILD-TYPE
  COLON ADENOCARCINOMA                      10             118
  COLON MUCINOUS ADENOCARCINOMA              4              20
  RECTAL ADENOCARCINOMA                      6              51
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D91V6, multiclass
    clus
vv   PTPRM MUTATED PTPRM WILD-TYPE
  T1             1               8
  T2             2              45
  T3            14             136
  T4             3              14
D91V7, multiclass
    clus
vv   PTPRM MUTATED PTPRM WILD-TYPE
  N0            14             120
  N1             3              41
  N2             3              43
D91V8, multiclass
     clus
vv    PTPRM MUTATED PTPRM WILD-TYPE
  M0             18             171
  M1              1              30
  M1A             0               1
D91V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PTPRM MUTATED     20    0
  PTPRM WILD-TYPE  196    8
     clus
vv    PTPRM MUTATED PTPRM WILD-TYPE
  NO              0               8
  YES            20             196

Clustering(92) Variable = CNTN1 MUTATION ANALYSIS
D92V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNTN1 WILD-TYPE"   "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE"   "CNTN1 MUTATED"   "CNTN1 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE"   "CNTN1 MUTATED" "CNTN1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNTN1 WILD-TYPE"   "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CNTN1 WILD-TYPE"   "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNTN1 WILD-TYPE"   "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE"   "CNTN1 MUTATED"   "CNTN1 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE"   "CNTN1 MUTATED" "CNTN1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNTN1 WILD-TYPE"   "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CNTN1 WILD-TYPE"   "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNTN1 WILD-TYPE"   "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE"   "CNTN1 MUTATED"   "CNTN1 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE"   "CNTN1 MUTATED" "CNTN1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNTN1 WILD-TYPE"   "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CNTN1 WILD-TYPE"   "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
[1] "hr=" "1.3"
D92V2, continuous
D92V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNTN1 MUTATED     10    4
  CNTN1 WILD-TYPE  144   64
        clus
vv       CNTN1 MUTATED CNTN1 WILD-TYPE
  COLON             10             144
  RECTUM             4              64
D92V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNTN1 MUTATED      9    5
  CNTN1 WILD-TYPE  108  102
        clus
vv       CNTN1 MUTATED CNTN1 WILD-TYPE
  FEMALE             5             102
  MALE               9             108
D92V5, multiclass
                                clus
vv                               CNTN1 MUTATED CNTN1 WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D92V6, multiclass
    clus
vv   CNTN1 MUTATED CNTN1 WILD-TYPE
  T1             1               8
  T2             4              43
  T3             5             145
  T4             4              13
D92V7, multiclass
    clus
vv   CNTN1 MUTATED CNTN1 WILD-TYPE
  N0             9             125
  N1             2              42
  N2             3              43
D92V8, multiclass
     clus
vv    CNTN1 MUTATED CNTN1 WILD-TYPE
  M0             12             177
  M1              2              29
  M1A             0               1
D92V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNTN1 MUTATED     14    0
  CNTN1 WILD-TYPE  202    8
     clus
vv    CNTN1 MUTATED CNTN1 WILD-TYPE
  NO              0               8
  YES            14             202

Clustering(93) Variable = DCAF4L2 MUTATION ANALYSIS
D93V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
[1] "hr=" "1.1"
D93V2, continuous
D93V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DCAF4L2 MUTATED      9    2
  DCAF4L2 WILD-TYPE  145   66
        clus
vv       DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  COLON                9               145
  RECTUM               2                66
D93V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DCAF4L2 MUTATED      6    5
  DCAF4L2 WILD-TYPE  111  102
        clus
vv       DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  FEMALE               5               102
  MALE                 6               111
D93V5, multiclass
                                clus
vv                               DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  COLON ADENOCARCINOMA                         4               124
  COLON MUCINOUS ADENOCARCINOMA                4                20
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D93V6, multiclass
    clus
vv   DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  T1               1                 8
  T2               5                42
  T3               3               147
  T4               2                15
D93V7, multiclass
    clus
vv   DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  N0               8               126
  N1               2                42
  N2               1                45
D93V8, multiclass
     clus
vv    DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  M0               10               179
  M1                0                31
  M1A               0                 1
D93V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DCAF4L2 MUTATED     11    0
  DCAF4L2 WILD-TYPE  205    8
     clus
vv    DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  NO                0                 8
  YES              11               205

Clustering(94) Variable = IL1RAPL2 MUTATION ANALYSIS
D94V1, survival
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
  "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
  "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
  "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
  "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
  "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
  "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D94V2, continuous
D94V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  IL1RAPL2 MUTATED      5    5
  IL1RAPL2 WILD-TYPE  149   63
        clus
vv       IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE
  COLON                 5                149
  RECTUM                5                 63
D94V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  IL1RAPL2 MUTATED      3    7
  IL1RAPL2 WILD-TYPE  114  100
        clus
vv       IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE
  FEMALE                7                100
  MALE                  3                114
D94V5, multiclass
                                clus
vv                               IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE
  COLON ADENOCARCINOMA                          3                125
  COLON MUCINOUS ADENOCARCINOMA                 2                 22
  RECTAL ADENOCARCINOMA                         3                 54
  RECTAL MUCINOUS ADENOCARCINOMA                2                  6
D94V6, multiclass
    clus
vv   IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE
  T1                0                  9
  T2                1                 46
  T3                8                142
  T4                1                 16
D94V7, multiclass
    clus
vv   IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE
  N0                6                128
  N1                2                 42
  N2                2                 44
D94V8, multiclass
     clus
vv    IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE
  M0                10                179
  M1                 0                 31
  M1A                0                  1
D94V9, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  IL1RAPL2 MUTATED     10    0
  IL1RAPL2 WILD-TYPE  206    8
     clus
vv    IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE
  NO                 0                  8
  YES               10                206

Clustering(95) Variable = OR51V1 MUTATION ANALYSIS
D95V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE"   "OR51V1 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR51V1 WILD-TYPE"   "OR51V1 MUTATED"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR51V1 WILD-TYPE"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE"   "OR51V1 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR51V1 WILD-TYPE"   "OR51V1 MUTATED"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR51V1 WILD-TYPE"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE"   "OR51V1 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR51V1 WILD-TYPE"   "OR51V1 MUTATED"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR51V1 WILD-TYPE"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D95V2, continuous
D95V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR51V1 MUTATED      9    0
  OR51V1 WILD-TYPE  145   68
        clus
vv       OR51V1 MUTATED OR51V1 WILD-TYPE
  COLON               9              145
  RECTUM              0               68
D95V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR51V1 MUTATED      3    6
  OR51V1 WILD-TYPE  114  101
        clus
vv       OR51V1 MUTATED OR51V1 WILD-TYPE
  FEMALE              6              101
  MALE                3              114
D95V5, multiclass
                                clus
vv                               OR51V1 MUTATED OR51V1 WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               5               19
  RECTAL ADENOCARCINOMA                       0               57
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D95V6, multiclass
    clus
vv   OR51V1 MUTATED OR51V1 WILD-TYPE
  T1              0                9
  T2              0               47
  T3              5              145
  T4              3               14
D95V7, multiclass
    clus
vv   OR51V1 MUTATED OR51V1 WILD-TYPE
  N0              8              126
  N1              0               44
  N2              1               45
D95V8, multiclass
     clus
vv    OR51V1 MUTATED OR51V1 WILD-TYPE
  M0               9              180
  M1               0               31
  M1A              0                1
D95V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR51V1 MUTATED      8    1
  OR51V1 WILD-TYPE  208    7
     clus
vv    OR51V1 MUTATED OR51V1 WILD-TYPE
  NO               1                7
  YES              8              208

Clustering(96) Variable = SLC16A7 MUTATION ANALYSIS
D96V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
[1] "hr=" "3.2"
D96V2, continuous
D96V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC16A7 MUTATED      8    1
  SLC16A7 WILD-TYPE  146   67
        clus
vv       SLC16A7 MUTATED SLC16A7 WILD-TYPE
  COLON                8               146
  RECTUM               1                67
D96V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC16A7 MUTATED      4    5
  SLC16A7 WILD-TYPE  113  102
        clus
vv       SLC16A7 MUTATED SLC16A7 WILD-TYPE
  FEMALE               5               102
  MALE                 4               113
D96V5, multiclass
                                clus
vv                               SLC16A7 MUTATED SLC16A7 WILD-TYPE
  COLON ADENOCARCINOMA                         5               123
  COLON MUCINOUS ADENOCARCINOMA                3                21
  RECTAL ADENOCARCINOMA                        1                56
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D96V6, multiclass
    clus
vv   SLC16A7 MUTATED SLC16A7 WILD-TYPE
  T1               1                 8
  T2               1                46
  T3               5               145
  T4               2                15
D96V7, multiclass
    clus
vv   SLC16A7 MUTATED SLC16A7 WILD-TYPE
  N0               6               128
  N1               2                42
  N2               1                45
D96V8, multiclass
     clus
vv    SLC16A7 MUTATED SLC16A7 WILD-TYPE
  M0                9               180
  M1                0                31
  M1A               0                 1
D96V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC16A7 MUTATED      9    0
  SLC16A7 WILD-TYPE  207    8
     clus
vv    SLC16A7 MUTATED SLC16A7 WILD-TYPE
  NO                0                 8
  YES               9               207

Clustering(97) Variable = CCBP2 MUTATION ANALYSIS
D97V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CCBP2 WILD-TYPE"   "CCBP2 MUTATED" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CCBP2 WILD-TYPE"   "CCBP2 MUTATED" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CCBP2 MUTATED"   "CCBP2 MUTATED" "CCBP2 WILD-TYPE"   "CCBP2 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CCBP2 WILD-TYPE"   "CCBP2 MUTATED" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CCBP2 WILD-TYPE"   "CCBP2 MUTATED" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CCBP2 MUTATED"   "CCBP2 MUTATED" "CCBP2 WILD-TYPE"   "CCBP2 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CCBP2 WILD-TYPE"   "CCBP2 MUTATED" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CCBP2 WILD-TYPE"   "CCBP2 MUTATED" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CCBP2 MUTATED"   "CCBP2 MUTATED" "CCBP2 WILD-TYPE"   "CCBP2 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D97V2, continuous
D97V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CCBP2 MUTATED      5    5
  CCBP2 WILD-TYPE  149   63
        clus
vv       CCBP2 MUTATED CCBP2 WILD-TYPE
  COLON              5             149
  RECTUM             5              63
D97V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CCBP2 MUTATED      4    6
  CCBP2 WILD-TYPE  113  101
        clus
vv       CCBP2 MUTATED CCBP2 WILD-TYPE
  FEMALE             6             101
  MALE               4             113
D97V5, multiclass
                                clus
vv                               CCBP2 MUTATED CCBP2 WILD-TYPE
  COLON ADENOCARCINOMA                       3             125
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D97V6, multiclass
    clus
vv   CCBP2 MUTATED CCBP2 WILD-TYPE
  T1             1               8
  T2             4              43
  T3             5             145
  T4             0              17
D97V7, multiclass
    clus
vv   CCBP2 MUTATED CCBP2 WILD-TYPE
  N0             8             126
  N1             2              42
  N2             0              46
D97V8, multiclass
     clus
vv    CCBP2 MUTATED CCBP2 WILD-TYPE
  M0              9             180
  M1              1              30
  M1A             0               1
D97V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CCBP2 MUTATED     10    0
  CCBP2 WILD-TYPE  206    8
     clus
vv    CCBP2 MUTATED CCBP2 WILD-TYPE
  NO              0               8
  YES            10             206

Clustering(98) Variable = CDH2 MUTATION ANALYSIS
D98V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDH2 WILD-TYPE"   "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDH2 WILD-TYPE"   "CDH2 MUTATED" "CDH2 WILD-TYPE"   "CDH2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE"   "CDH2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CDH2 WILD-TYPE"   "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDH2 WILD-TYPE"   "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDH2 WILD-TYPE"   "CDH2 MUTATED" "CDH2 WILD-TYPE"   "CDH2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE"   "CDH2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CDH2 WILD-TYPE"   "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDH2 WILD-TYPE"   "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDH2 WILD-TYPE"   "CDH2 MUTATED" "CDH2 WILD-TYPE"   "CDH2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE"   "CDH2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CDH2 WILD-TYPE"   "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
[1] "hr=" "1.7"
D98V2, continuous
D98V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH2 MUTATED     12    4
  CDH2 WILD-TYPE  142   64
        clus
vv       CDH2 MUTATED CDH2 WILD-TYPE
  COLON            12            142
  RECTUM            4             64
D98V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH2 MUTATED     10    6
  CDH2 WILD-TYPE  107  101
        clus
vv       CDH2 MUTATED CDH2 WILD-TYPE
  FEMALE            6            101
  MALE             10            107
D98V5, multiclass
                                clus
vv                               CDH2 MUTATED CDH2 WILD-TYPE
  COLON ADENOCARCINOMA                      9            119
  COLON MUCINOUS ADENOCARCINOMA             3             21
  RECTAL ADENOCARCINOMA                     4             53
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D98V6, multiclass
    clus
vv   CDH2 MUTATED CDH2 WILD-TYPE
  T1            0              9
  T2            2             45
  T3           11            139
  T4            3             14
D98V7, multiclass
    clus
vv   CDH2 MUTATED CDH2 WILD-TYPE
  N0           14            120
  N1            2             42
  N2            0             46
D98V8, multiclass
     clus
vv    CDH2 MUTATED CDH2 WILD-TYPE
  M0            14            175
  M1             0             31
  M1A            1              0
D98V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH2 MUTATED     16    0
  CDH2 WILD-TYPE  200    8
     clus
vv    CDH2 MUTATED CDH2 WILD-TYPE
  NO             0              8
  YES           16            200

Clustering(99) Variable = SDK1 MUTATION ANALYSIS
D99V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SDK1 WILD-TYPE"   "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SDK1 WILD-TYPE"   "SDK1 MUTATED"   "SDK1 MUTATED"   "SDK1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SDK1 WILD-TYPE"   "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SDK1 WILD-TYPE"   "SDK1 MUTATED"   "SDK1 MUTATED"   "SDK1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SDK1 WILD-TYPE"   "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SDK1 WILD-TYPE"   "SDK1 MUTATED"   "SDK1 MUTATED"   "SDK1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
[1] "hr=" "1.4"
D99V2, continuous
D99V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SDK1 MUTATED     25    2
  SDK1 WILD-TYPE  129   66
        clus
vv       SDK1 MUTATED SDK1 WILD-TYPE
  COLON            25            129
  RECTUM            2             66
D99V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SDK1 MUTATED     13   14
  SDK1 WILD-TYPE  104   93
        clus
vv       SDK1 MUTATED SDK1 WILD-TYPE
  FEMALE           14             93
  MALE             13            104
D99V5, multiclass
                                clus
vv                               SDK1 MUTATED SDK1 WILD-TYPE
  COLON ADENOCARCINOMA                     17            111
  COLON MUCINOUS ADENOCARCINOMA             7             17
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D99V6, multiclass
    clus
vv   SDK1 MUTATED SDK1 WILD-TYPE
  T1            1              8
  T2            5             42
  T3           19            131
  T4            2             15
D99V7, multiclass
    clus
vv   SDK1 MUTATED SDK1 WILD-TYPE
  N0           16            118
  N1            3             41
  N2            8             38
D99V8, multiclass
     clus
vv    SDK1 MUTATED SDK1 WILD-TYPE
  M0            22            167
  M1             4             27
  M1A            0              1
D99V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SDK1 MUTATED     26    1
  SDK1 WILD-TYPE  190    7
     clus
vv    SDK1 MUTATED SDK1 WILD-TYPE
  NO             1              7
  YES           26            190

Clustering(100) Variable = CDH18 MUTATION ANALYSIS
D100V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH18 WILD-TYPE"   "CDH18 MUTATED"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "CDH18 MUTATED" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH18 WILD-TYPE"   "CDH18 MUTATED"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "CDH18 MUTATED" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH18 WILD-TYPE"   "CDH18 MUTATED"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "CDH18 MUTATED" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
[1] "hr=" "1.5"
D100V2, continuous
D100V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH18 MUTATED     10    3
  CDH18 WILD-TYPE  144   65
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  COLON             10             144
  RECTUM             3              65
D100V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH18 MUTATED      5    8
  CDH18 WILD-TYPE  112   99
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  FEMALE             8              99
  MALE               5             112
D100V5, multiclass
                                clus
vv                               CDH18 MUTATED CDH18 WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D100V6, multiclass
    clus
vv   CDH18 MUTATED CDH18 WILD-TYPE
  T1             0               9
  T2             2              45
  T3             8             142
  T4             3              14
D100V7, multiclass
    clus
vv   CDH18 MUTATED CDH18 WILD-TYPE
  N0            10             124
  N1             2              42
  N2             1              45
D100V8, multiclass
     clus
vv    CDH18 MUTATED CDH18 WILD-TYPE
  M0             12             177
  M1              1              30
  M1A             0               1
D100V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH18 MUTATED     12    1
  CDH18 WILD-TYPE  204    7
     clus
vv    CDH18 MUTATED CDH18 WILD-TYPE
  NO              1               7
  YES            12             204

Clustering(101) Variable = AFF2 MUTATION ANALYSIS
D101V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "AFF2 MUTATED"   "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
  "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"AFF2 WILD-TYPE"   "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" "AFF2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"AFF2 WILD-TYPE"   "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "AFF2 MUTATED"   "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
  "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"AFF2 WILD-TYPE"   "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" "AFF2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"AFF2 WILD-TYPE"   "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "AFF2 MUTATED"   "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
  "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"AFF2 WILD-TYPE"   "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" "AFF2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"AFF2 WILD-TYPE"   "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
[1] "hr=" "1.2"
D101V2, continuous
D101V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  AFF2 MUTATED     15    2
  AFF2 WILD-TYPE  139   66
        clus
vv       AFF2 MUTATED AFF2 WILD-TYPE
  COLON            15            139
  RECTUM            2             66
D101V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  AFF2 MUTATED     10    7
  AFF2 WILD-TYPE  107  100
        clus
vv       AFF2 MUTATED AFF2 WILD-TYPE
  FEMALE            7            100
  MALE             10            107
D101V5, multiclass
                                clus
vv                               AFF2 MUTATED AFF2 WILD-TYPE
  COLON ADENOCARCINOMA                     10            118
  COLON MUCINOUS ADENOCARCINOMA             5             19
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D101V6, multiclass
    clus
vv   AFF2 MUTATED AFF2 WILD-TYPE
  T1            1              8
  T2            2             45
  T3           11            139
  T4            2             15
D101V7, multiclass
    clus
vv   AFF2 MUTATED AFF2 WILD-TYPE
  N0           12            122
  N1            3             41
  N2            2             44
D101V8, multiclass
     clus
vv    AFF2 MUTATED AFF2 WILD-TYPE
  M0            17            172
  M1             0             31
  M1A            0              1
D101V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  AFF2 MUTATED     16    1
  AFF2 WILD-TYPE  200    7
     clus
vv    AFF2 MUTATED AFF2 WILD-TYPE
  NO             1              7
  YES           16            200

Clustering(102) Variable = OR2L13 MUTATION ANALYSIS
D102V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR2L13 WILD-TYPE"   "OR2L13 MUTATED" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "OR2L13 MUTATED" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE"   "OR2L13 MUTATED" "OR2L13 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "OR2L13 MUTATED" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR2L13 WILD-TYPE"   "OR2L13 MUTATED" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "OR2L13 MUTATED" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE"   "OR2L13 MUTATED" "OR2L13 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "OR2L13 MUTATED" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR2L13 WILD-TYPE"   "OR2L13 MUTATED" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "OR2L13 MUTATED" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE"   "OR2L13 MUTATED" "OR2L13 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "OR2L13 MUTATED" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
[1] "hr=" "1.6"
D102V2, continuous
D102V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2L13 MUTATED      7    3
  OR2L13 WILD-TYPE  147   65
        clus
vv       OR2L13 MUTATED OR2L13 WILD-TYPE
  COLON               7              147
  RECTUM              3               65
D102V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2L13 MUTATED      6    4
  OR2L13 WILD-TYPE  111  103
        clus
vv       OR2L13 MUTATED OR2L13 WILD-TYPE
  FEMALE              4              103
  MALE                6              111
D102V5, multiclass
                                clus
vv                               OR2L13 MUTATED OR2L13 WILD-TYPE
  COLON ADENOCARCINOMA                        6              122
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D102V6, multiclass
    clus
vv   OR2L13 MUTATED OR2L13 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              7              143
  T4              1               16
D102V7, multiclass
    clus
vv   OR2L13 MUTATED OR2L13 WILD-TYPE
  N0              8              126
  N1              1               43
  N2              1               45
D102V8, multiclass
     clus
vv    OR2L13 MUTATED OR2L13 WILD-TYPE
  M0               9              180
  M1               1               30
  M1A              0                1
D102V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2L13 MUTATED     10    0
  OR2L13 WILD-TYPE  206    8
     clus
vv    OR2L13 MUTATED OR2L13 WILD-TYPE
  NO               0                8
  YES             10              206

Clustering(103) Variable = CDH12 MUTATION ANALYSIS
D103V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE"   "CDH12 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE"   "CDH12 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE"   "CDH12 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D103V2, continuous
D103V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH12 MUTATED      8    5
  CDH12 WILD-TYPE  146   63
        clus
vv       CDH12 MUTATED CDH12 WILD-TYPE
  COLON              8             146
  RECTUM             5              63
D103V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH12 MUTATED      6    7
  CDH12 WILD-TYPE  111  100
        clus
vv       CDH12 MUTATED CDH12 WILD-TYPE
  FEMALE             7             100
  MALE               6             111
D103V5, multiclass
                                clus
vv                               CDH12 MUTATED CDH12 WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      5              52
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D103V6, multiclass
    clus
vv   CDH12 MUTATED CDH12 WILD-TYPE
  T1             1               8
  T2             5              42
  T3             6             144
  T4             1              16
D103V7, multiclass
    clus
vv   CDH12 MUTATED CDH12 WILD-TYPE
  N0            12             122
  N1             1              43
  N2             0              46
D103V8, multiclass
     clus
vv    CDH12 MUTATED CDH12 WILD-TYPE
  M0             12             177
  M1              0              31
  M1A             0               1
D103V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH12 MUTATED     13    0
  CDH12 WILD-TYPE  203    8
     clus
vv    CDH12 MUTATED CDH12 WILD-TYPE
  NO              0               8
  YES            13             203

Clustering(104) Variable = MIER3 MUTATION ANALYSIS
D104V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MIER3 WILD-TYPE"   "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" "MIER3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MIER3 WILD-TYPE"   "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" "MIER3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MIER3 WILD-TYPE"   "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" "MIER3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D104V2, continuous
D104V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MIER3 MUTATED     10    1
  MIER3 WILD-TYPE  144   67
        clus
vv       MIER3 MUTATED MIER3 WILD-TYPE
  COLON             10             144
  RECTUM             1              67
D104V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MIER3 MUTATED      5    6
  MIER3 WILD-TYPE  112  101
        clus
vv       MIER3 MUTATED MIER3 WILD-TYPE
  FEMALE             6             101
  MALE               5             112
D104V5, multiclass
                                clus
vv                               MIER3 MUTATED MIER3 WILD-TYPE
  COLON ADENOCARCINOMA                       9             119
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D104V6, multiclass
    clus
vv   MIER3 MUTATED MIER3 WILD-TYPE
  T1             0               9
  T2             3              44
  T3             6             144
  T4             2              15
D104V7, multiclass
    clus
vv   MIER3 MUTATED MIER3 WILD-TYPE
  N0             9             125
  N1             2              42
  N2             0              46
D104V8, multiclass
     clus
vv    MIER3 MUTATED MIER3 WILD-TYPE
  M0             10             179
  M1              0              31
  M1A             0               1
D104V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MIER3 MUTATED     11    0
  MIER3 WILD-TYPE  205    8
     clus
vv    MIER3 MUTATED MIER3 WILD-TYPE
  NO              0               8
  YES            11             205

Clustering(105) Variable = LRP2 MUTATION ANALYSIS
D105V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED"   "LRP2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"LRP2 WILD-TYPE"   "LRP2 MUTATED"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
  "LRP2 MUTATED"   "LRP2 MUTATED"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "LRP2 MUTATED"   "LRP2 MUTATED" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED"   "LRP2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"LRP2 WILD-TYPE"   "LRP2 MUTATED"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
  "LRP2 MUTATED"   "LRP2 MUTATED"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "LRP2 MUTATED"   "LRP2 MUTATED" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED"   "LRP2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"LRP2 WILD-TYPE"   "LRP2 MUTATED"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
  "LRP2 MUTATED"   "LRP2 MUTATED"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "LRP2 MUTATED"   "LRP2 MUTATED" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
[1] "hr=" "1.4"
D105V2, continuous
D105V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  LRP2 MUTATED     28    7
  LRP2 WILD-TYPE  126   61
        clus
vv       LRP2 MUTATED LRP2 WILD-TYPE
  COLON            28            126
  RECTUM            7             61
D105V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  LRP2 MUTATED     16   19
  LRP2 WILD-TYPE  101   88
        clus
vv       LRP2 MUTATED LRP2 WILD-TYPE
  FEMALE           19             88
  MALE             16            101
D105V5, multiclass
                                clus
vv                               LRP2 MUTATED LRP2 WILD-TYPE
  COLON ADENOCARCINOMA                     19            109
  COLON MUCINOUS ADENOCARCINOMA             8             16
  RECTAL ADENOCARCINOMA                     7             50
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D105V6, multiclass
    clus
vv   LRP2 MUTATED LRP2 WILD-TYPE
  T1            2              7
  T2            7             40
  T3           21            129
  T4            5             12
D105V7, multiclass
    clus
vv   LRP2 MUTATED LRP2 WILD-TYPE
  N0           22            112
  N1            7             37
  N2            6             40
D105V8, multiclass
     clus
vv    LRP2 MUTATED LRP2 WILD-TYPE
  M0            32            157
  M1             2             29
  M1A            0              1
D105V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  LRP2 MUTATED     35    0
  LRP2 WILD-TYPE  181    8
     clus
vv    LRP2 MUTATED LRP2 WILD-TYPE
  NO             0              8
  YES           35            181

Clustering(106) Variable = FAM22F MUTATION ANALYSIS
D106V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE"   "FAM22F MUTATED" "FAM22F WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE"   "FAM22F MUTATED"   "FAM22F MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"FAM22F WILD-TYPE"   "FAM22F MUTATED" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "FAM22F MUTATED" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE"   "FAM22F MUTATED" "FAM22F WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE"   "FAM22F MUTATED"   "FAM22F MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"FAM22F WILD-TYPE"   "FAM22F MUTATED" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "FAM22F MUTATED" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE"   "FAM22F MUTATED" "FAM22F WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE"   "FAM22F MUTATED"   "FAM22F MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"FAM22F WILD-TYPE"   "FAM22F MUTATED" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "FAM22F MUTATED" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
[1] "hr=" "3.3"
D106V2, continuous
D106V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM22F MUTATED      9    1
  FAM22F WILD-TYPE  145   67
        clus
vv       FAM22F MUTATED FAM22F WILD-TYPE
  COLON               9              145
  RECTUM              1               67
D106V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM22F MUTATED      9    1
  FAM22F WILD-TYPE  108  106
        clus
vv       FAM22F MUTATED FAM22F WILD-TYPE
  FEMALE              1              106
  MALE                9              108
D106V5, multiclass
                                clus
vv                               FAM22F MUTATED FAM22F WILD-TYPE
  COLON ADENOCARCINOMA                        7              121
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D106V6, multiclass
    clus
vv   FAM22F MUTATED FAM22F WILD-TYPE
  T1              0                9
  T2              4               43
  T3              2              148
  T4              4               13
D106V7, multiclass
    clus
vv   FAM22F MUTATED FAM22F WILD-TYPE
  N0              6              128
  N1              2               42
  N2              2               44
D106V8, multiclass
     clus
vv    FAM22F MUTATED FAM22F WILD-TYPE
  M0               6              183
  M1               3               28
  M1A              0                1
D106V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM22F MUTATED     10    0
  FAM22F WILD-TYPE  206    8
     clus
vv    FAM22F MUTATED FAM22F WILD-TYPE
  NO               0                8
  YES             10              206

Clustering(107) Variable = GRIA1 MUTATION ANALYSIS
D107V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GRIA1 WILD-TYPE"   "GRIA1 MUTATED"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GRIA1 WILD-TYPE"   "GRIA1 MUTATED"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GRIA1 WILD-TYPE"   "GRIA1 MUTATED"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
[1] "hr=" "2.1"
D107V2, continuous
D107V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRIA1 MUTATED     14    1
  GRIA1 WILD-TYPE  140   67
        clus
vv       GRIA1 MUTATED GRIA1 WILD-TYPE
  COLON             14             140
  RECTUM             1              67
D107V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRIA1 MUTATED      5   10
  GRIA1 WILD-TYPE  112   97
        clus
vv       GRIA1 MUTATED GRIA1 WILD-TYPE
  FEMALE            10              97
  MALE               5             112
D107V5, multiclass
                                clus
vv                               GRIA1 MUTATED GRIA1 WILD-TYPE
  COLON ADENOCARCINOMA                      12             116
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D107V6, multiclass
    clus
vv   GRIA1 MUTATED GRIA1 WILD-TYPE
  T1             0               9
  T2             4              43
  T3             8             142
  T4             2              15
D107V7, multiclass
    clus
vv   GRIA1 MUTATED GRIA1 WILD-TYPE
  N0            10             124
  N1             2              42
  N2             3              43
D107V8, multiclass
     clus
vv    GRIA1 MUTATED GRIA1 WILD-TYPE
  M0             11             178
  M1              2              29
  M1A             1               0
D107V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRIA1 MUTATED     14    1
  GRIA1 WILD-TYPE  202    7
     clus
vv    GRIA1 MUTATED GRIA1 WILD-TYPE
  NO              1               7
  YES            14             202

Clustering(108) Variable = FAM5C MUTATION ANALYSIS
D108V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
[1] "hr=" "3"  
D108V2, continuous
D108V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FAM5C MUTATED     10    3
  FAM5C WILD-TYPE  144   65
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  COLON             10             144
  RECTUM             3              65
D108V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FAM5C MUTATED      4    9
  FAM5C WILD-TYPE  113   98
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  FEMALE             9              98
  MALE               4             113
D108V5, multiclass
                                clus
vv                               FAM5C MUTATED FAM5C WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D108V6, multiclass
    clus
vv   FAM5C MUTATED FAM5C WILD-TYPE
  T1             0               9
  T2             4              43
  T3             6             144
  T4             3              14
D108V7, multiclass
    clus
vv   FAM5C MUTATED FAM5C WILD-TYPE
  N0            12             122
  N1             1              43
  N2             0              46
D108V8, multiclass
     clus
vv    FAM5C MUTATED FAM5C WILD-TYPE
  M0             12             177
  M1              0              31
  M1A             0               1
D108V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FAM5C MUTATED     13    0
  FAM5C WILD-TYPE  203    8
     clus
vv    FAM5C MUTATED FAM5C WILD-TYPE
  NO              0               8
  YES            13             203

Clustering(109) Variable = DPP10 MUTATION ANALYSIS
D109V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DPP10 WILD-TYPE"   "DPP10 MUTATED"   "DPP10 MUTATED" "DPP10 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DPP10 WILD-TYPE"   "DPP10 MUTATED"   "DPP10 MUTATED" "DPP10 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DPP10 WILD-TYPE"   "DPP10 MUTATED"   "DPP10 MUTATED" "DPP10 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
[1] "hr=" "1.2"
D109V2, continuous
D109V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DPP10 MUTATED      9    4
  DPP10 WILD-TYPE  145   64
        clus
vv       DPP10 MUTATED DPP10 WILD-TYPE
  COLON              9             145
  RECTUM             4              64
D109V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DPP10 MUTATED      6    7
  DPP10 WILD-TYPE  111  100
        clus
vv       DPP10 MUTATED DPP10 WILD-TYPE
  FEMALE             7             100
  MALE               6             111
D109V5, multiclass
                                clus
vv                               DPP10 MUTATED DPP10 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D109V6, multiclass
    clus
vv   DPP10 MUTATED DPP10 WILD-TYPE
  T1             1               8
  T2             3              44
  T3             7             143
  T4             2              15
D109V7, multiclass
    clus
vv   DPP10 MUTATED DPP10 WILD-TYPE
  N0             8             126
  N1             1              43
  N2             4              42
D109V8, multiclass
     clus
vv    DPP10 MUTATED DPP10 WILD-TYPE
  M0             13             176
  M1              0              31
  M1A             0               1
D109V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DPP10 MUTATED     13    0
  DPP10 WILD-TYPE  203    8
     clus
vv    DPP10 MUTATED DPP10 WILD-TYPE
  NO              0               8
  YES            13             203

Clustering(110) Variable = PRR21 MUTATION ANALYSIS
D110V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE"   "PRR21 MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "PRR21 MUTATED" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE"   "PRR21 MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "PRR21 MUTATED" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE"   "PRR21 MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "PRR21 MUTATED" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
[1] "Remove cluster labels:" "PRR21 MUTATED"         
clus
  PRR21 MUTATED PRR21 WILD-TYPE 
              2             118 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3846 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877      TCGA-AA-3939 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3952 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977      TCGA-AA-3986 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024      TCGA-AA-A029 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02W 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AY-4070 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AY-4071      TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581      TCGA-AG-3582 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599      TCGA-AG-3726 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887      TCGA-AG-3892 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999      TCGA-AG-4001 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002      TCGA-AG-A008 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A025 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N      TCGA-AG-A02X 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-AG-A032      TCGA-AG-A036 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
D110V2, continuous
D110V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRR21 MUTATED      3    0
  PRR21 WILD-TYPE  151   68
        clus
vv       PRR21 MUTATED PRR21 WILD-TYPE
  COLON              3             151
  RECTUM             0              68
D110V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRR21 MUTATED      2    1
  PRR21 WILD-TYPE  115  106
        clus
vv       PRR21 MUTATED PRR21 WILD-TYPE
  FEMALE             1             106
  MALE               2             115
D110V5, multiclass
                                clus
vv                               PRR21 MUTATED PRR21 WILD-TYPE
  COLON ADENOCARCINOMA                       3             125
  COLON MUCINOUS ADENOCARCINOMA              0              24
  RECTAL ADENOCARCINOMA                      0              57
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D110V6, multiclass
    clus
vv   PRR21 MUTATED PRR21 WILD-TYPE
  T1             0               9
  T2             0              47
  T3             3             147
  T4             0              17
D110V7, multiclass
    clus
vv   PRR21 MUTATED PRR21 WILD-TYPE
  N0             2             132
  N1             0              44
  N2             1              45
D110V8, multiclass
     clus
vv    PRR21 MUTATED PRR21 WILD-TYPE
  M0              3             186
  M1              0              31
  M1A             0               1
D110V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRR21 MUTATED      3    0
  PRR21 WILD-TYPE  213    8
     clus
vv    PRR21 MUTATED PRR21 WILD-TYPE
  NO              0               8
  YES             3             213

Clustering(111) Variable = IFT80 MUTATION ANALYSIS
D111V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE"   "IFT80 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "IFT80 MUTATED" "IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE"   "IFT80 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "IFT80 MUTATED" "IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE"   "IFT80 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "IFT80 MUTATED" "IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
[1] "hr=" "1.1"
D111V2, continuous
D111V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  IFT80 MUTATED      7    3
  IFT80 WILD-TYPE  147   65
        clus
vv       IFT80 MUTATED IFT80 WILD-TYPE
  COLON              7             147
  RECTUM             3              65
D111V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  IFT80 MUTATED      5    5
  IFT80 WILD-TYPE  112  102
        clus
vv       IFT80 MUTATED IFT80 WILD-TYPE
  FEMALE             5             102
  MALE               5             112
D111V5, multiclass
                                clus
vv                               IFT80 MUTATED IFT80 WILD-TYPE
  COLON ADENOCARCINOMA                       5             123
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D111V6, multiclass
    clus
vv   IFT80 MUTATED IFT80 WILD-TYPE
  T1             1               8
  T2             3              44
  T3             6             144
  T4             0              17
D111V7, multiclass
    clus
vv   IFT80 MUTATED IFT80 WILD-TYPE
  N0             9             125
  N1             1              43
  N2             0              46
D111V8, multiclass
     clus
vv    IFT80 MUTATED IFT80 WILD-TYPE
  M0             10             179
  M1              0              31
  M1A             0               1
D111V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  IFT80 MUTATED     10    0
  IFT80 WILD-TYPE  206    8
     clus
vv    IFT80 MUTATED IFT80 WILD-TYPE
  NO              0               8
  YES            10             206

Clustering(112) Variable = FREM2 MUTATION ANALYSIS
D112V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "FREM2 MUTATED"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FREM2 MUTATED"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "FREM2 MUTATED"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FREM2 MUTATED"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "FREM2 MUTATED"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FREM2 MUTATED"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
[1] "hr=" "1.5"
D112V2, continuous
D112V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FREM2 MUTATED     17    5
  FREM2 WILD-TYPE  137   63
        clus
vv       FREM2 MUTATED FREM2 WILD-TYPE
  COLON             17             137
  RECTUM             5              63
D112V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FREM2 MUTATED      6   17
  FREM2 WILD-TYPE  111   90
        clus
vv       FREM2 MUTATED FREM2 WILD-TYPE
  FEMALE            17              90
  MALE               6             111
D112V5, multiclass
                                clus
vv                               FREM2 MUTATED FREM2 WILD-TYPE
  COLON ADENOCARCINOMA                      14             114
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D112V6, multiclass
    clus
vv   FREM2 MUTATED FREM2 WILD-TYPE
  T1             2               7
  T2             3              44
  T3            14             136
  T4             4              13
D112V7, multiclass
    clus
vv   FREM2 MUTATED FREM2 WILD-TYPE
  N0            15             119
  N1             5              39
  N2             3              43
D112V8, multiclass
     clus
vv    FREM2 MUTATED FREM2 WILD-TYPE
  M0             20             169
  M1              1              30
  M1A             0               1
D112V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FREM2 MUTATED     22    1
  FREM2 WILD-TYPE  194    7
     clus
vv    FREM2 MUTATED FREM2 WILD-TYPE
  NO              1               7
  YES            22             194

Clustering(113) Variable = PIK3R1 MUTATION ANALYSIS
D113V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
[1] "hr="     "7.3e+07"
D113V2, continuous
D113V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3R1 MUTATED      5    4
  PIK3R1 WILD-TYPE  149   64
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  COLON               5              149
  RECTUM              4               64
D113V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3R1 MUTATED      2    7
  PIK3R1 WILD-TYPE  115  100
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  FEMALE              7              100
  MALE                2              115
D113V5, multiclass
                                clus
vv                               PIK3R1 MUTATED PIK3R1 WILD-TYPE
  COLON ADENOCARCINOMA                        5              123
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       4               53
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D113V6, multiclass
    clus
vv   PIK3R1 MUTATED PIK3R1 WILD-TYPE
  T1              2                7
  T2              2               45
  T3              4              146
  T4              1               16
D113V7, multiclass
    clus
vv   PIK3R1 MUTATED PIK3R1 WILD-TYPE
  N0              8              126
  N1              0               44
  N2              1               45
D113V8, multiclass
     clus
vv    PIK3R1 MUTATED PIK3R1 WILD-TYPE
  M0               9              180
  M1               0               31
  M1A              0                1
D113V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3R1 MUTATED      9    0
  PIK3R1 WILD-TYPE  207    8
     clus
vv    PIK3R1 MUTATED PIK3R1 WILD-TYPE
  NO               0                8
  YES              9              207

Clustering(114) Variable = TMEM132D MUTATION ANALYSIS
D114V1, survival
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"TMEM132D WILD-TYPE"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
  "TMEM132D MUTATED"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"TMEM132D WILD-TYPE"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"TMEM132D WILD-TYPE"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"TMEM132D WILD-TYPE"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
  "TMEM132D MUTATED"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"TMEM132D WILD-TYPE"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"TMEM132D WILD-TYPE"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"TMEM132D WILD-TYPE"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
  "TMEM132D MUTATED"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"TMEM132D WILD-TYPE"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"TMEM132D WILD-TYPE"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
[1] "hr=" "1.3"
D114V2, continuous
D114V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  TMEM132D MUTATED     15    4
  TMEM132D WILD-TYPE  139   64
        clus
vv       TMEM132D MUTATED TMEM132D WILD-TYPE
  COLON                15                139
  RECTUM                4                 64
D114V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  TMEM132D MUTATED      9   10
  TMEM132D WILD-TYPE  108   97
        clus
vv       TMEM132D MUTATED TMEM132D WILD-TYPE
  FEMALE               10                 97
  MALE                  9                108
D114V5, multiclass
                                clus
vv                               TMEM132D MUTATED TMEM132D WILD-TYPE
  COLON ADENOCARCINOMA                         10                118
  COLON MUCINOUS ADENOCARCINOMA                 5                 19
  RECTAL ADENOCARCINOMA                         4                 53
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
D114V6, multiclass
    clus
vv   TMEM132D MUTATED TMEM132D WILD-TYPE
  T1                0                  9
  T2                4                 43
  T3               13                137
  T4                2                 15
D114V7, multiclass
    clus
vv   TMEM132D MUTATED TMEM132D WILD-TYPE
  N0               11                123
  N1                4                 40
  N2                4                 42
D114V8, multiclass
     clus
vv    TMEM132D MUTATED TMEM132D WILD-TYPE
  M0                18                171
  M1                 0                 31
  M1A                0                  1
D114V9, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  TMEM132D MUTATED     19    0
  TMEM132D WILD-TYPE  197    8
     clus
vv    TMEM132D MUTATED TMEM132D WILD-TYPE
  NO                 0                  8
  YES               19                197

Clustering(115) Variable = COL4A5 MUTATION ANALYSIS
D115V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "COL4A5 MUTATED" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"COL4A5 WILD-TYPE"   "COL4A5 MUTATED" "COL4A5 WILD-TYPE"   "COL4A5 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"COL4A5 WILD-TYPE"   "COL4A5 MUTATED" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE"   "COL4A5 MUTATED" "COL4A5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE"   "COL4A5 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "COL4A5 MUTATED" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE"   "COL4A5 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "COL4A5 MUTATED" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "COL4A5 MUTATED" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"COL4A5 WILD-TYPE"   "COL4A5 MUTATED" "COL4A5 WILD-TYPE"   "COL4A5 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"COL4A5 WILD-TYPE"   "COL4A5 MUTATED" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE"   "COL4A5 MUTATED" "COL4A5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE"   "COL4A5 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "COL4A5 MUTATED" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE"   "COL4A5 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "COL4A5 MUTATED" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "COL4A5 MUTATED" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"COL4A5 WILD-TYPE"   "COL4A5 MUTATED" "COL4A5 WILD-TYPE"   "COL4A5 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"COL4A5 WILD-TYPE"   "COL4A5 MUTATED" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE"   "COL4A5 MUTATED" "COL4A5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE"   "COL4A5 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "COL4A5 MUTATED" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE"   "COL4A5 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "COL4A5 MUTATED" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
[1] "hr=" "1.4"
D115V2, continuous
D115V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  COL4A5 MUTATED     13    2
  COL4A5 WILD-TYPE  141   66
        clus
vv       COL4A5 MUTATED COL4A5 WILD-TYPE
  COLON              13              141
  RECTUM              2               66
D115V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  COL4A5 MUTATED      4   11
  COL4A5 WILD-TYPE  113   96
        clus
vv       COL4A5 MUTATED COL4A5 WILD-TYPE
  FEMALE             11               96
  MALE                4              113
D115V5, multiclass
                                clus
vv                               COL4A5 MUTATED COL4A5 WILD-TYPE
  COLON ADENOCARCINOMA                       10              118
  COLON MUCINOUS ADENOCARCINOMA               3               21
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D115V6, multiclass
    clus
vv   COL4A5 MUTATED COL4A5 WILD-TYPE
  T1              0                9
  T2              3               44
  T3             10              140
  T4              2               15
D115V7, multiclass
    clus
vv   COL4A5 MUTATED COL4A5 WILD-TYPE
  N0              9              125
  N1              3               41
  N2              3               43
D115V8, multiclass
     clus
vv    COL4A5 MUTATED COL4A5 WILD-TYPE
  M0              13              176
  M1               1               30
  M1A              0                1
D115V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  COL4A5 MUTATED     15    0
  COL4A5 WILD-TYPE  201    8
     clus
vv    COL4A5 MUTATED COL4A5 WILD-TYPE
  NO               0                8
  YES             15              201

Clustering(116) Variable = CHD4 MUTATION ANALYSIS
D116V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE"   "CHD4 MUTATED" "CHD4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE"   "CHD4 MUTATED"   "CHD4 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE"   "CHD4 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "CHD4 MUTATED" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE"   "CHD4 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
  "CHD4 MUTATED" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CHD4 WILD-TYPE"   "CHD4 MUTATED" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE"   "CHD4 MUTATED" "CHD4 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "CHD4 MUTATED" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE"   "CHD4 MUTATED" "CHD4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE"   "CHD4 MUTATED"   "CHD4 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE"   "CHD4 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "CHD4 MUTATED" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE"   "CHD4 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
  "CHD4 MUTATED" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CHD4 WILD-TYPE"   "CHD4 MUTATED" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE"   "CHD4 MUTATED" "CHD4 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "CHD4 MUTATED" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE"   "CHD4 MUTATED" "CHD4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE"   "CHD4 MUTATED"   "CHD4 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE"   "CHD4 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "CHD4 MUTATED" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE"   "CHD4 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
  "CHD4 MUTATED" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CHD4 WILD-TYPE"   "CHD4 MUTATED" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE"   "CHD4 MUTATED" "CHD4 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "CHD4 MUTATED" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
[1] "hr=" "1.5"
D116V2, continuous
D116V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CHD4 MUTATED     12    5
  CHD4 WILD-TYPE  142   63
        clus
vv       CHD4 MUTATED CHD4 WILD-TYPE
  COLON            12            142
  RECTUM            5             63
D116V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CHD4 MUTATED      9    8
  CHD4 WILD-TYPE  108   99
        clus
vv       CHD4 MUTATED CHD4 WILD-TYPE
  FEMALE            8             99
  MALE              9            108
D116V5, multiclass
                                clus
vv                               CHD4 MUTATED CHD4 WILD-TYPE
  COLON ADENOCARCINOMA                      9            119
  COLON MUCINOUS ADENOCARCINOMA             3             21
  RECTAL ADENOCARCINOMA                     3             54
  RECTAL MUCINOUS ADENOCARCINOMA            1              7
D116V6, multiclass
    clus
vv   CHD4 MUTATED CHD4 WILD-TYPE
  T1            1              8
  T2            5             42
  T3            9            141
  T4            2             15
D116V7, multiclass
    clus
vv   CHD4 MUTATED CHD4 WILD-TYPE
  N0           14            120
  N1            0             44
  N2            3             43
D116V8, multiclass
     clus
vv    CHD4 MUTATED CHD4 WILD-TYPE
  M0            15            174
  M1             1             30
  M1A            0              1
D116V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CHD4 MUTATED     17    0
  CHD4 WILD-TYPE  199    8
     clus
vv    CHD4 MUTATED CHD4 WILD-TYPE
  NO             0              8
  YES           17            199

Clustering(117) Variable = PKHD1 MUTATION ANALYSIS
D117V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
  "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PKHD1 WILD-TYPE"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE"   "PKHD1 MUTATED"   "PKHD1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PKHD1 WILD-TYPE"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE"   "PKHD1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PKHD1 WILD-TYPE"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PKHD1 WILD-TYPE"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PKHD1 WILD-TYPE"   "PKHD1 MUTATED"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
  "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
  "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PKHD1 WILD-TYPE"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE"   "PKHD1 MUTATED"   "PKHD1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PKHD1 WILD-TYPE"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE"   "PKHD1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PKHD1 WILD-TYPE"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PKHD1 WILD-TYPE"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PKHD1 WILD-TYPE"   "PKHD1 MUTATED"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
  "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
  "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PKHD1 WILD-TYPE"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE"   "PKHD1 MUTATED"   "PKHD1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PKHD1 WILD-TYPE"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE"   "PKHD1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PKHD1 WILD-TYPE"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PKHD1 WILD-TYPE"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PKHD1 WILD-TYPE"   "PKHD1 MUTATED"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
  "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
[1] "hr=" "1.6"
D117V2, continuous
D117V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PKHD1 MUTATED     21    5
  PKHD1 WILD-TYPE  133   63
        clus
vv       PKHD1 MUTATED PKHD1 WILD-TYPE
  COLON             21             133
  RECTUM             5              63
D117V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PKHD1 MUTATED     12   14
  PKHD1 WILD-TYPE  105   93
        clus
vv       PKHD1 MUTATED PKHD1 WILD-TYPE
  FEMALE            14              93
  MALE              12             105
D117V5, multiclass
                                clus
vv                               PKHD1 MUTATED PKHD1 WILD-TYPE
  COLON ADENOCARCINOMA                      14             114
  COLON MUCINOUS ADENOCARCINOMA              6              18
  RECTAL ADENOCARCINOMA                      5              52
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D117V6, multiclass
    clus
vv   PKHD1 MUTATED PKHD1 WILD-TYPE
  T1             0               9
  T2             3              44
  T3            18             132
  T4             5              12
D117V7, multiclass
    clus
vv   PKHD1 MUTATED PKHD1 WILD-TYPE
  N0            16             118
  N1             2              42
  N2             8              38
D117V8, multiclass
     clus
vv    PKHD1 MUTATED PKHD1 WILD-TYPE
  M0             21             168
  M1              4              27
  M1A             0               1
D117V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PKHD1 MUTATED     25    1
  PKHD1 WILD-TYPE  191    7
     clus
vv    PKHD1 MUTATED PKHD1 WILD-TYPE
  NO              1               7
  YES            25             191

Clustering(118) Variable = EVC2 MUTATION ANALYSIS
D118V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
[1] "hr=" "2.1"
D118V2, continuous
D118V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  EVC2 MUTATED     13    4
  EVC2 WILD-TYPE  141   64
        clus
vv       EVC2 MUTATED EVC2 WILD-TYPE
  COLON            13            141
  RECTUM            4             64
D118V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  EVC2 MUTATED      9    8
  EVC2 WILD-TYPE  108   99
        clus
vv       EVC2 MUTATED EVC2 WILD-TYPE
  FEMALE            8             99
  MALE              9            108
D118V5, multiclass
                                clus
vv                               EVC2 MUTATED EVC2 WILD-TYPE
  COLON ADENOCARCINOMA                     10            118
  COLON MUCINOUS ADENOCARCINOMA             3             21
  RECTAL ADENOCARCINOMA                     3             54
  RECTAL MUCINOUS ADENOCARCINOMA            1              7
D118V6, multiclass
    clus
vv   EVC2 MUTATED EVC2 WILD-TYPE
  T1            0              9
  T2            2             45
  T3           13            137
  T4            2             15
D118V7, multiclass
    clus
vv   EVC2 MUTATED EVC2 WILD-TYPE
  N0           12            122
  N1            2             42
  N2            3             43
D118V8, multiclass
     clus
vv    EVC2 MUTATED EVC2 WILD-TYPE
  M0            15            174
  M1             1             30
  M1A            0              1
D118V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  EVC2 MUTATED     16    1
  EVC2 WILD-TYPE  200    7
     clus
vv    EVC2 MUTATED EVC2 WILD-TYPE
  NO             1              7
  YES           16            200

Clustering(119) Variable = HMCN1 MUTATION ANALYSIS
D119V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED"   "HMCN1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"HMCN1 WILD-TYPE"   "HMCN1 MUTATED"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "HMCN1 MUTATED" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
  "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "HMCN1 MUTATED"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED"   "HMCN1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"HMCN1 WILD-TYPE"   "HMCN1 MUTATED"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "HMCN1 MUTATED" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
  "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "HMCN1 MUTATED"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED"   "HMCN1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"HMCN1 WILD-TYPE"   "HMCN1 MUTATED"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "HMCN1 MUTATED" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
  "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "HMCN1 MUTATED"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
[1] "hr=" "1.6"
D119V2, continuous
D119V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HMCN1 MUTATED     22    8
  HMCN1 WILD-TYPE  132   60
        clus
vv       HMCN1 MUTATED HMCN1 WILD-TYPE
  COLON             22             132
  RECTUM             8              60
D119V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HMCN1 MUTATED     20   10
  HMCN1 WILD-TYPE   97   97
        clus
vv       HMCN1 MUTATED HMCN1 WILD-TYPE
  FEMALE            10              97
  MALE              20              97
D119V5, multiclass
                                clus
vv                               HMCN1 MUTATED HMCN1 WILD-TYPE
  COLON ADENOCARCINOMA                      15             113
  COLON MUCINOUS ADENOCARCINOMA              6              18
  RECTAL ADENOCARCINOMA                      7              50
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D119V6, multiclass
    clus
vv   HMCN1 MUTATED HMCN1 WILD-TYPE
  T1             1               8
  T2             6              41
  T3            19             131
  T4             4              13
D119V7, multiclass
    clus
vv   HMCN1 MUTATED HMCN1 WILD-TYPE
  N0            21             113
  N1             4              40
  N2             5              41
D119V8, multiclass
     clus
vv    HMCN1 MUTATED HMCN1 WILD-TYPE
  M0             26             163
  M1              3              28
  M1A             0               1
D119V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HMCN1 MUTATED     29    1
  HMCN1 WILD-TYPE  187    7
     clus
vv    HMCN1 MUTATED HMCN1 WILD-TYPE
  NO              1               7
  YES            29             187

Clustering(120) Variable = DKK4 MUTATION ANALYSIS
D120V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "DKK4 MUTATED" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "DKK4 MUTATED" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "DKK4 MUTATED" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
[1] "hr=" "1.8"
D120V2, continuous
D120V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DKK4 MUTATED      4    3
  DKK4 WILD-TYPE  150   65
        clus
vv       DKK4 MUTATED DKK4 WILD-TYPE
  COLON             4            150
  RECTUM            3             65
D120V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DKK4 MUTATED      4    3
  DKK4 WILD-TYPE  113  104
        clus
vv       DKK4 MUTATED DKK4 WILD-TYPE
  FEMALE            3            104
  MALE              4            113
D120V5, multiclass
                                clus
vv                               DKK4 MUTATED DKK4 WILD-TYPE
  COLON ADENOCARCINOMA                      2            126
  COLON MUCINOUS ADENOCARCINOMA             2             22
  RECTAL ADENOCARCINOMA                     3             54
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D120V6, multiclass
    clus
vv   DKK4 MUTATED DKK4 WILD-TYPE
  T1            0              9
  T2            1             46
  T3            5            145
  T4            1             16
D120V7, multiclass
    clus
vv   DKK4 MUTATED DKK4 WILD-TYPE
  N0            5            129
  N1            2             42
  N2            0             46
D120V8, multiclass
     clus
vv    DKK4 MUTATED DKK4 WILD-TYPE
  M0             6            183
  M1             1             30
  M1A            0              1
D120V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DKK4 MUTATED      7    0
  DKK4 WILD-TYPE  209    8
     clus
vv    DKK4 MUTATED DKK4 WILD-TYPE
  NO             0              8
  YES            7            209

Clustering(121) Variable = SFMBT2 MUTATION ANALYSIS
D121V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D121V2, continuous
D121V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SFMBT2 MUTATED     13    1
  SFMBT2 WILD-TYPE  141   67
        clus
vv       SFMBT2 MUTATED SFMBT2 WILD-TYPE
  COLON              13              141
  RECTUM              1               67
D121V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SFMBT2 MUTATED      8    6
  SFMBT2 WILD-TYPE  109  101
        clus
vv       SFMBT2 MUTATED SFMBT2 WILD-TYPE
  FEMALE              6              101
  MALE                8              109
D121V5, multiclass
                                clus
vv                               SFMBT2 MUTATED SFMBT2 WILD-TYPE
  COLON ADENOCARCINOMA                       10              118
  COLON MUCINOUS ADENOCARCINOMA               3               21
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D121V6, multiclass
    clus
vv   SFMBT2 MUTATED SFMBT2 WILD-TYPE
  T1              0                9
  T2              4               43
  T3              7              143
  T4              2               15
D121V7, multiclass
    clus
vv   SFMBT2 MUTATED SFMBT2 WILD-TYPE
  N0              8              126
  N1              4               40
  N2              2               44
D121V8, multiclass
     clus
vv    SFMBT2 MUTATED SFMBT2 WILD-TYPE
  M0              11              178
  M1               2               29
  M1A              0                1
D121V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SFMBT2 MUTATED     13    1
  SFMBT2 WILD-TYPE  203    7
     clus
vv    SFMBT2 MUTATED SFMBT2 WILD-TYPE
  NO               1                7
  YES             13              203

Clustering(122) Variable = LUZP2 MUTATION ANALYSIS
D122V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LUZP2 WILD-TYPE"   "LUZP2 MUTATED" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LUZP2 MUTATED" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LUZP2 WILD-TYPE"   "LUZP2 MUTATED" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LUZP2 MUTATED" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LUZP2 WILD-TYPE"   "LUZP2 MUTATED" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LUZP2 MUTATED" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
[1] "Remove cluster labels:" "LUZP2 MUTATED"         
clus
  LUZP2 MUTATED LUZP2 WILD-TYPE 
              2             118 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024      TCGA-AA-A029 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02O 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689      TCGA-AF-2691 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A008 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A025 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N      TCGA-AG-A02X 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A032      TCGA-AG-A036 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
D122V2, continuous
D122V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LUZP2 MUTATED      4    2
  LUZP2 WILD-TYPE  150   66
        clus
vv       LUZP2 MUTATED LUZP2 WILD-TYPE
  COLON              4             150
  RECTUM             2              66
D122V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LUZP2 MUTATED      5    1
  LUZP2 WILD-TYPE  112  106
        clus
vv       LUZP2 MUTATED LUZP2 WILD-TYPE
  FEMALE             1             106
  MALE               5             112
D122V5, multiclass
                                clus
vv                               LUZP2 MUTATED LUZP2 WILD-TYPE
  COLON ADENOCARCINOMA                       3             125
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D122V6, multiclass
    clus
vv   LUZP2 MUTATED LUZP2 WILD-TYPE
  T1             0               9
  T2             1              46
  T3             4             146
  T4             1              16
D122V7, multiclass
    clus
vv   LUZP2 MUTATED LUZP2 WILD-TYPE
  N0             4             130
  N1             2              42
  N2             0              46
D122V8, multiclass
     clus
vv    LUZP2 MUTATED LUZP2 WILD-TYPE
  M0              6             183
  M1              0              31
  M1A             0               1
D122V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LUZP2 MUTATED      6    0
  LUZP2 WILD-TYPE  210    8
     clus
vv    LUZP2 MUTATED LUZP2 WILD-TYPE
  NO              0               8
  YES             6             210

Clustering(123) Variable = UNC13C MUTATION ANALYSIS
D123V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE"   "UNC13C MUTATED" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE"   "UNC13C MUTATED" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE"   "UNC13C MUTATED" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE"   "UNC13C MUTATED" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE"   "UNC13C MUTATED" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE"   "UNC13C MUTATED" 
[1] "hr=" "1.5"
D123V2, continuous
D123V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UNC13C MUTATED     12    5
  UNC13C WILD-TYPE  142   63
        clus
vv       UNC13C MUTATED UNC13C WILD-TYPE
  COLON              12              142
  RECTUM              5               63
D123V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UNC13C MUTATED      6   11
  UNC13C WILD-TYPE  111   96
        clus
vv       UNC13C MUTATED UNC13C WILD-TYPE
  FEMALE             11               96
  MALE                6              111
D123V5, multiclass
                                clus
vv                               UNC13C MUTATED UNC13C WILD-TYPE
  COLON ADENOCARCINOMA                        8              120
  COLON MUCINOUS ADENOCARCINOMA               3               21
  RECTAL ADENOCARCINOMA                       5               52
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D123V6, multiclass
    clus
vv   UNC13C MUTATED UNC13C WILD-TYPE
  T1              2                7
  T2              3               44
  T3              9              141
  T4              3               14
D123V7, multiclass
    clus
vv   UNC13C MUTATED UNC13C WILD-TYPE
  N0             14              120
  N1              1               43
  N2              2               44
D123V8, multiclass
     clus
vv    UNC13C MUTATED UNC13C WILD-TYPE
  M0              16              173
  M1               1               30
  M1A              0                1
D123V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UNC13C MUTATED     17    0
  UNC13C WILD-TYPE  199    8
     clus
vv    UNC13C MUTATED UNC13C WILD-TYPE
  NO               0                8
  YES             17              199

Clustering(124) Variable = UBE2NL MUTATION ANALYSIS
D124V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE"   "UBE2NL MUTATED" "UBE2NL WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE"   "UBE2NL MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "UBE2NL MUTATED"   "UBE2NL MUTATED" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "UBE2NL MUTATED" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE"   "UBE2NL MUTATED" "UBE2NL WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE"   "UBE2NL MUTATED" "UBE2NL WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE"   "UBE2NL MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "UBE2NL MUTATED"   "UBE2NL MUTATED" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "UBE2NL MUTATED" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE"   "UBE2NL MUTATED" "UBE2NL WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE"   "UBE2NL MUTATED" "UBE2NL WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE"   "UBE2NL MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "UBE2NL MUTATED"   "UBE2NL MUTATED" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "UBE2NL MUTATED" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE"   "UBE2NL MUTATED" "UBE2NL WILD-TYPE" 
[1] "hr="     "2.7e+07"
D124V2, continuous
D124V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UBE2NL MUTATED      5    2
  UBE2NL WILD-TYPE  149   66
        clus
vv       UBE2NL MUTATED UBE2NL WILD-TYPE
  COLON               5              149
  RECTUM              2               66
D124V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UBE2NL MUTATED      3    4
  UBE2NL WILD-TYPE  114  103
        clus
vv       UBE2NL MUTATED UBE2NL WILD-TYPE
  FEMALE              4              103
  MALE                3              114
D124V5, multiclass
                                clus
vv                               UBE2NL MUTATED UBE2NL WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D124V6, multiclass
    clus
vv   UBE2NL MUTATED UBE2NL WILD-TYPE
  T1              0                9
  T2              2               45
  T3              3              147
  T4              2               15
D124V7, multiclass
    clus
vv   UBE2NL MUTATED UBE2NL WILD-TYPE
  N0              5              129
  N1              2               42
  N2              0               46
D124V8, multiclass
     clus
vv    UBE2NL MUTATED UBE2NL WILD-TYPE
  M0               6              183
  M1               0               31
  M1A              0                1
D124V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UBE2NL MUTATED      7    0
  UBE2NL WILD-TYPE  209    8
     clus
vv    UBE2NL MUTATED UBE2NL WILD-TYPE
  NO               0                8
  YES              7              209

Clustering(125) Variable = MCF2 MUTATION ANALYSIS
D125V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE"   "MCF2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE"   "MCF2 MUTATED" "MCF2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"MCF2 WILD-TYPE"   "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"MCF2 WILD-TYPE"   "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE"   "MCF2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE"   "MCF2 MUTATED" "MCF2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"MCF2 WILD-TYPE"   "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"MCF2 WILD-TYPE"   "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE"   "MCF2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE"   "MCF2 MUTATED" "MCF2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"MCF2 WILD-TYPE"   "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"MCF2 WILD-TYPE"   "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
[1] "hr=" "2.1"
D125V2, continuous
D125V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MCF2 MUTATED      8    4
  MCF2 WILD-TYPE  146   64
        clus
vv       MCF2 MUTATED MCF2 WILD-TYPE
  COLON             8            146
  RECTUM            4             64
D125V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MCF2 MUTATED      5    7
  MCF2 WILD-TYPE  112  100
        clus
vv       MCF2 MUTATED MCF2 WILD-TYPE
  FEMALE            7            100
  MALE              5            112
D125V5, multiclass
                                clus
vv                               MCF2 MUTATED MCF2 WILD-TYPE
  COLON ADENOCARCINOMA                      5            123
  COLON MUCINOUS ADENOCARCINOMA             3             21
  RECTAL ADENOCARCINOMA                     4             53
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D125V6, multiclass
    clus
vv   MCF2 MUTATED MCF2 WILD-TYPE
  T1            1              8
  T2            4             43
  T3            4            146
  T4            3             14
D125V7, multiclass
    clus
vv   MCF2 MUTATED MCF2 WILD-TYPE
  N0            8            126
  N1            3             41
  N2            1             45
D125V8, multiclass
     clus
vv    MCF2 MUTATED MCF2 WILD-TYPE
  M0            10            179
  M1             1             30
  M1A            0              1
D125V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MCF2 MUTATED     12    0
  MCF2 WILD-TYPE  204    8
     clus
vv    MCF2 MUTATED MCF2 WILD-TYPE
  NO             0              8
  YES           12            204

Clustering(126) Variable = FAT2 MUTATION ANALYSIS
D126V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED"   "FAT2 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE"   "FAT2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED"   "FAT2 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE"   "FAT2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED"   "FAT2 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE"   "FAT2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
[1] "hr=" "1.9"
D126V2, continuous
D126V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FAT2 MUTATED     22    7
  FAT2 WILD-TYPE  132   61
        clus
vv       FAT2 MUTATED FAT2 WILD-TYPE
  COLON            22            132
  RECTUM            7             61
D126V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FAT2 MUTATED     12   17
  FAT2 WILD-TYPE  105   90
        clus
vv       FAT2 MUTATED FAT2 WILD-TYPE
  FEMALE           17             90
  MALE             12            105
D126V5, multiclass
                                clus
vv                               FAT2 MUTATED FAT2 WILD-TYPE
  COLON ADENOCARCINOMA                     14            114
  COLON MUCINOUS ADENOCARCINOMA             7             17
  RECTAL ADENOCARCINOMA                     7             50
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D126V6, multiclass
    clus
vv   FAT2 MUTATED FAT2 WILD-TYPE
  T1            1              8
  T2            3             44
  T3           21            129
  T4            3             14
D126V7, multiclass
    clus
vv   FAT2 MUTATED FAT2 WILD-TYPE
  N0           19            115
  N1            4             40
  N2            6             40
D126V8, multiclass
     clus
vv    FAT2 MUTATED FAT2 WILD-TYPE
  M0            27            162
  M1             1             30
  M1A            0              1
D126V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FAT2 MUTATED     28    1
  FAT2 WILD-TYPE  188    7
     clus
vv    FAT2 MUTATED FAT2 WILD-TYPE
  NO             1              7
  YES           28            188

Clustering(127) Variable = BCHE MUTATION ANALYSIS
D127V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" "BCHE WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" "BCHE WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" "BCHE WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
[1] "hr="     "2.7e+07"
D127V2, continuous
D127V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BCHE MUTATED      7    2
  BCHE WILD-TYPE  147   66
        clus
vv       BCHE MUTATED BCHE WILD-TYPE
  COLON             7            147
  RECTUM            2             66
D127V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BCHE MUTATED      7    2
  BCHE WILD-TYPE  110  105
        clus
vv       BCHE MUTATED BCHE WILD-TYPE
  FEMALE            2            105
  MALE              7            110
D127V5, multiclass
                                clus
vv                               BCHE MUTATED BCHE WILD-TYPE
  COLON ADENOCARCINOMA                      6            122
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D127V6, multiclass
    clus
vv   BCHE MUTATED BCHE WILD-TYPE
  T1            0              9
  T2            4             43
  T3            4            146
  T4            1             16
D127V7, multiclass
    clus
vv   BCHE MUTATED BCHE WILD-TYPE
  N0            6            128
  N1            0             44
  N2            3             43
D127V8, multiclass
     clus
vv    BCHE MUTATED BCHE WILD-TYPE
  M0             7            182
  M1             1             30
  M1A            0              1
D127V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BCHE MUTATED      9    0
  BCHE WILD-TYPE  207    8
     clus
vv    BCHE MUTATED BCHE WILD-TYPE
  NO             0              8
  YES            9            207

Clustering(128) Variable = KIAA1486 MUTATION ANALYSIS
D128V1, survival
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
[1] "hr=" "2.7"
D128V2, continuous
D128V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA1486 MUTATED      9    4
  KIAA1486 WILD-TYPE  145   64
        clus
vv       KIAA1486 MUTATED KIAA1486 WILD-TYPE
  COLON                 9                145
  RECTUM                4                 64
D128V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA1486 MUTATED      7    6
  KIAA1486 WILD-TYPE  110  101
        clus
vv       KIAA1486 MUTATED KIAA1486 WILD-TYPE
  FEMALE                6                101
  MALE                  7                110
D128V5, multiclass
                                clus
vv                               KIAA1486 MUTATED KIAA1486 WILD-TYPE
  COLON ADENOCARCINOMA                          6                122
  COLON MUCINOUS ADENOCARCINOMA                 3                 21
  RECTAL ADENOCARCINOMA                         4                 53
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
D128V6, multiclass
    clus
vv   KIAA1486 MUTATED KIAA1486 WILD-TYPE
  T1                1                  8
  T2                2                 45
  T3                8                142
  T4                2                 15
D128V7, multiclass
    clus
vv   KIAA1486 MUTATED KIAA1486 WILD-TYPE
  N0                8                126
  N1                2                 42
  N2                3                 43
D128V8, multiclass
     clus
vv    KIAA1486 MUTATED KIAA1486 WILD-TYPE
  M0                13                176
  M1                 0                 31
  M1A                0                  1
D128V9, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA1486 MUTATED     12    1
  KIAA1486 WILD-TYPE  204    7
     clus
vv    KIAA1486 MUTATED KIAA1486 WILD-TYPE
  NO                 1                  7
  YES               12                204

Clustering(129) Variable = GRIA4 MUTATION ANALYSIS
D129V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE"   "GRIA4 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE"   "GRIA4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "GRIA4 MUTATED" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE"   "GRIA4 MUTATED" "GRIA4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "GRIA4 MUTATED" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE"   "GRIA4 MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE"   "GRIA4 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE"   "GRIA4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "GRIA4 MUTATED" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE"   "GRIA4 MUTATED" "GRIA4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "GRIA4 MUTATED" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE"   "GRIA4 MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE"   "GRIA4 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE"   "GRIA4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "GRIA4 MUTATED" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE"   "GRIA4 MUTATED" "GRIA4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "GRIA4 MUTATED" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE"   "GRIA4 MUTATED" 
[1] "hr="     "7.5e+07"
D129V2, continuous
D129V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRIA4 MUTATED      8    4
  GRIA4 WILD-TYPE  146   64
        clus
vv       GRIA4 MUTATED GRIA4 WILD-TYPE
  COLON              8             146
  RECTUM             4              64
D129V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRIA4 MUTATED      7    5
  GRIA4 WILD-TYPE  110  102
        clus
vv       GRIA4 MUTATED GRIA4 WILD-TYPE
  FEMALE             5             102
  MALE               7             110
D129V5, multiclass
                                clus
vv                               GRIA4 MUTATED GRIA4 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D129V6, multiclass
    clus
vv   GRIA4 MUTATED GRIA4 WILD-TYPE
  T1             1               8
  T2             3              44
  T3             6             144
  T4             1              16
D129V7, multiclass
    clus
vv   GRIA4 MUTATED GRIA4 WILD-TYPE
  N0             9             125
  N1             1              43
  N2             2              44
D129V8, multiclass
     clus
vv    GRIA4 MUTATED GRIA4 WILD-TYPE
  M0             11             178
  M1              1              30
  M1A             0               1
D129V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRIA4 MUTATED     11    1
  GRIA4 WILD-TYPE  205    7
     clus
vv    GRIA4 MUTATED GRIA4 WILD-TYPE
  NO              1               7
  YES            11             205

Clustering(130) Variable = UBQLNL MUTATION ANALYSIS
D130V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE"   "UBQLNL MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
  "UBQLNL MUTATED" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE"   "UBQLNL MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
  "UBQLNL MUTATED" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE"   "UBQLNL MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
  "UBQLNL MUTATED" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
[1] "Remove cluster labels:" "UBQLNL MUTATED"        
clus
  UBQLNL MUTATED UBQLNL WILD-TYPE 
               2              118 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3986 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P       TCGA-AA-A01Q 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T       TCGA-AA-A01V 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024       TCGA-AA-A029 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02O 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F       TCGA-AA-A03J 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689       TCGA-AF-2691 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3582 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599       TCGA-AG-3726 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887       TCGA-AG-3892 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999       TCGA-AG-4001 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002       TCGA-AG-A008 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A025 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N       TCGA-AG-A02X 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A032       TCGA-AG-A036 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
D130V2, continuous
D130V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UBQLNL MUTATED      3    2
  UBQLNL WILD-TYPE  151   66
        clus
vv       UBQLNL MUTATED UBQLNL WILD-TYPE
  COLON               3              151
  RECTUM              2               66
D130V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UBQLNL MUTATED      4    1
  UBQLNL WILD-TYPE  113  106
        clus
vv       UBQLNL MUTATED UBQLNL WILD-TYPE
  FEMALE              1              106
  MALE                4              113
D130V5, multiclass
                                clus
vv                               UBQLNL MUTATED UBQLNL WILD-TYPE
  COLON ADENOCARCINOMA                        2              126
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D130V6, multiclass
    clus
vv   UBQLNL MUTATED UBQLNL WILD-TYPE
  T1              0                9
  T2              2               45
  T3              3              147
  T4              0               17
D130V7, multiclass
    clus
vv   UBQLNL MUTATED UBQLNL WILD-TYPE
  N0              3              131
  N1              0               44
  N2              2               44
D130V8, multiclass
     clus
vv    UBQLNL MUTATED UBQLNL WILD-TYPE
  M0               4              185
  M1               0               31
  M1A              0                1
D130V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UBQLNL MUTATED      5    0
  UBQLNL WILD-TYPE  211    8
     clus
vv    UBQLNL MUTATED UBQLNL WILD-TYPE
  NO               0                8
  YES              5              211

Clustering(131) Variable = GABRG1 MUTATION ANALYSIS
D131V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE"   "GABRG1 MUTATED" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE"   "GABRG1 MUTATED" "GABRG1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE"   "GABRG1 MUTATED" "GABRG1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GABRG1 MUTATED" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE"   "GABRG1 MUTATED" "GABRG1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE"   "GABRG1 MUTATED" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE"   "GABRG1 MUTATED" "GABRG1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE"   "GABRG1 MUTATED" "GABRG1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GABRG1 MUTATED" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE"   "GABRG1 MUTATED" "GABRG1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE"   "GABRG1 MUTATED" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE"   "GABRG1 MUTATED" "GABRG1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE"   "GABRG1 MUTATED" "GABRG1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GABRG1 MUTATED" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE"   "GABRG1 MUTATED" "GABRG1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D131V2, continuous
D131V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRG1 MUTATED      6    2
  GABRG1 WILD-TYPE  148   66
        clus
vv       GABRG1 MUTATED GABRG1 WILD-TYPE
  COLON               6              148
  RECTUM              2               66
D131V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRG1 MUTATED      1    7
  GABRG1 WILD-TYPE  116  100
        clus
vv       GABRG1 MUTATED GABRG1 WILD-TYPE
  FEMALE              7              100
  MALE                1              116
D131V5, multiclass
                                clus
vv                               GABRG1 MUTATED GABRG1 WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D131V6, multiclass
    clus
vv   GABRG1 MUTATED GABRG1 WILD-TYPE
  T1              0                9
  T2              1               46
  T3              5              145
  T4              2               15
D131V7, multiclass
    clus
vv   GABRG1 MUTATED GABRG1 WILD-TYPE
  N0              5              129
  N1              1               43
  N2              2               44
D131V8, multiclass
     clus
vv    GABRG1 MUTATED GABRG1 WILD-TYPE
  M0               8              181
  M1               0               31
  M1A              0                1
D131V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRG1 MUTATED      7    1
  GABRG1 WILD-TYPE  209    7
     clus
vv    GABRG1 MUTATED GABRG1 WILD-TYPE
  NO               1                7
  YES              7              209

Clustering(132) Variable = TUSC3 MUTATION ANALYSIS
D132V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" "TUSC3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" "TUSC3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" "TUSC3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D132V2, continuous
D132V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TUSC3 MUTATED      5    2
  TUSC3 WILD-TYPE  149   66
        clus
vv       TUSC3 MUTATED TUSC3 WILD-TYPE
  COLON              5             149
  RECTUM             2              66
D132V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TUSC3 MUTATED      4    3
  TUSC3 WILD-TYPE  113  104
        clus
vv       TUSC3 MUTATED TUSC3 WILD-TYPE
  FEMALE             3             104
  MALE               4             113
D132V5, multiclass
                                clus
vv                               TUSC3 MUTATED TUSC3 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D132V6, multiclass
    clus
vv   TUSC3 MUTATED TUSC3 WILD-TYPE
  T1             0               9
  T2             2              45
  T3             3             147
  T4             1              16
D132V7, multiclass
    clus
vv   TUSC3 MUTATED TUSC3 WILD-TYPE
  N0             6             128
  N1             0              44
  N2             1              45
D132V8, multiclass
     clus
vv    TUSC3 MUTATED TUSC3 WILD-TYPE
  M0              7             182
  M1              0              31
  M1A             0               1
D132V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TUSC3 MUTATED      6    1
  TUSC3 WILD-TYPE  210    7
     clus
vv    TUSC3 MUTATED TUSC3 WILD-TYPE
  NO              1               7
  YES             6             210

Clustering(133) Variable = SAT1 MUTATION ANALYSIS
D133V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE"   "SAT1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE"   "SAT1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE"   "SAT1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE"   "SAT1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE"   "SAT1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE"   "SAT1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
[1] "Remove cluster labels:" "SAT1 MUTATED"          
clus
  SAT1 MUTATED SAT1 WILD-TYPE 
             2            118 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3818 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3846 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877     TCGA-AA-3939 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3952     TCGA-AA-3966 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3977     TCGA-AA-3986     TCGA-AA-A004 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01P     TCGA-AA-A01Q     TCGA-AA-A01R 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01S     TCGA-AA-A01T     TCGA-AA-A01V     TCGA-AA-A01X 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01Z     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02O     TCGA-AA-A02W 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A02Y     TCGA-AA-A03F     TCGA-AA-A03J     TCGA-AY-4070 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AY-4071     TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581     TCGA-AG-3582 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599     TCGA-AG-3726 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887     TCGA-AG-3892 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999     TCGA-AG-4001 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002     TCGA-AG-A008 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020     TCGA-AG-A025 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N     TCGA-AG-A02X 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A032     TCGA-AG-A036 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
D133V2, continuous
D133V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SAT1 MUTATED      4    0
  SAT1 WILD-TYPE  150   68
        clus
vv       SAT1 MUTATED SAT1 WILD-TYPE
  COLON             4            150
  RECTUM            0             68
D133V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SAT1 MUTATED      0    4
  SAT1 WILD-TYPE  117  103
        clus
vv       SAT1 MUTATED SAT1 WILD-TYPE
  FEMALE            4            103
  MALE              0            117
D133V5, multiclass
                                clus
vv                               SAT1 MUTATED SAT1 WILD-TYPE
  COLON ADENOCARCINOMA                      3            125
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     0             57
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D133V6, multiclass
    clus
vv   SAT1 MUTATED SAT1 WILD-TYPE
  T1            0              9
  T2            1             46
  T3            3            147
  T4            0             17
D133V7, multiclass
    clus
vv   SAT1 MUTATED SAT1 WILD-TYPE
  N0            2            132
  N1            1             43
  N2            1             45
D133V8, multiclass
     clus
vv    SAT1 MUTATED SAT1 WILD-TYPE
  M0             4            185
  M1             0             31
  M1A            0              1
D133V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SAT1 MUTATED      4    0
  SAT1 WILD-TYPE  212    8
     clus
vv    SAT1 MUTATED SAT1 WILD-TYPE
  NO             0              8
  YES            4            212

Clustering(134) Variable = RIMS2 MUTATION ANALYSIS
D134V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
[1] "hr=" "2.5"
D134V2, continuous
D134V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIMS2 MUTATED     12    1
  RIMS2 WILD-TYPE  142   67
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  COLON             12             142
  RECTUM             1              67
D134V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIMS2 MUTATED      6    7
  RIMS2 WILD-TYPE  111  100
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  FEMALE             7             100
  MALE               6             111
D134V5, multiclass
                                clus
vv                               RIMS2 MUTATED RIMS2 WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              4              20
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D134V6, multiclass
    clus
vv   RIMS2 MUTATED RIMS2 WILD-TYPE
  T1             0               9
  T2             3              44
  T3             7             143
  T4             3              14
D134V7, multiclass
    clus
vv   RIMS2 MUTATED RIMS2 WILD-TYPE
  N0             9             125
  N1             2              42
  N2             2              44
D134V8, multiclass
     clus
vv    RIMS2 MUTATED RIMS2 WILD-TYPE
  M0             10             179
  M1              2              29
  M1A             0               1
D134V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIMS2 MUTATED     13    0
  RIMS2 WILD-TYPE  203    8
     clus
vv    RIMS2 MUTATED RIMS2 WILD-TYPE
  NO              0               8
  YES            13             203

Clustering(135) Variable = SCN7A MUTATION ANALYSIS
D135V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
[1] "hr=" "1.5"
D135V2, continuous
D135V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SCN7A MUTATED     12    3
  SCN7A WILD-TYPE  142   65
        clus
vv       SCN7A MUTATED SCN7A WILD-TYPE
  COLON             12             142
  RECTUM             3              65
D135V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SCN7A MUTATED      7    8
  SCN7A WILD-TYPE  110   99
        clus
vv       SCN7A MUTATED SCN7A WILD-TYPE
  FEMALE             8              99
  MALE               7             110
D135V5, multiclass
                                clus
vv                               SCN7A MUTATED SCN7A WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D135V6, multiclass
    clus
vv   SCN7A MUTATED SCN7A WILD-TYPE
  T1             1               8
  T2             2              45
  T3             7             143
  T4             5              12
D135V7, multiclass
    clus
vv   SCN7A MUTATED SCN7A WILD-TYPE
  N0            12             122
  N1             0              44
  N2             3              43
D135V8, multiclass
     clus
vv    SCN7A MUTATED SCN7A WILD-TYPE
  M0             12             177
  M1              2              29
  M1A             0               1
D135V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SCN7A MUTATED     15    0
  SCN7A WILD-TYPE  201    8
     clus
vv    SCN7A MUTATED SCN7A WILD-TYPE
  NO              0               8
  YES            15             201

Clustering(136) Variable = TPTE MUTATION ANALYSIS
D136V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
[1] "hr=" "1.6"
D136V2, continuous
D136V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TPTE MUTATED     11    1
  TPTE WILD-TYPE  143   67
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  COLON            11            143
  RECTUM            1             67
D136V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TPTE MUTATED      5    7
  TPTE WILD-TYPE  112  100
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  FEMALE            7            100
  MALE              5            112
D136V5, multiclass
                                clus
vv                               TPTE MUTATED TPTE WILD-TYPE
  COLON ADENOCARCINOMA                      7            121
  COLON MUCINOUS ADENOCARCINOMA             4             20
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D136V6, multiclass
    clus
vv   TPTE MUTATED TPTE WILD-TYPE
  T1            0              9
  T2            3             44
  T3            7            143
  T4            2             15
D136V7, multiclass
    clus
vv   TPTE MUTATED TPTE WILD-TYPE
  N0            7            127
  N1            1             43
  N2            4             42
D136V8, multiclass
     clus
vv    TPTE MUTATED TPTE WILD-TYPE
  M0            10            179
  M1             1             30
  M1A            0              1
D136V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TPTE MUTATED     12    0
  TPTE WILD-TYPE  204    8
     clus
vv    TPTE MUTATED TPTE WILD-TYPE
  NO             0              8
  YES           12            204

Clustering(137) Variable = ZNF568 MUTATION ANALYSIS
D137V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE"   "ZNF568 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF568 WILD-TYPE"   "ZNF568 MUTATED" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF568 MUTATED" "ZNF568 WILD-TYPE"   "ZNF568 MUTATED" "ZNF568 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE"   "ZNF568 MUTATED" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF568 WILD-TYPE"   "ZNF568 MUTATED" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF568 MUTATED" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE"   "ZNF568 MUTATED" "ZNF568 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE"   "ZNF568 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF568 WILD-TYPE"   "ZNF568 MUTATED" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF568 MUTATED" "ZNF568 WILD-TYPE"   "ZNF568 MUTATED" "ZNF568 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE"   "ZNF568 MUTATED" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF568 WILD-TYPE"   "ZNF568 MUTATED" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF568 MUTATED" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE"   "ZNF568 MUTATED" "ZNF568 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE"   "ZNF568 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF568 WILD-TYPE"   "ZNF568 MUTATED" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF568 MUTATED" "ZNF568 WILD-TYPE"   "ZNF568 MUTATED" "ZNF568 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE"   "ZNF568 MUTATED" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF568 WILD-TYPE"   "ZNF568 MUTATED" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF568 MUTATED" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE"   "ZNF568 MUTATED" "ZNF568 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
[1] "hr=" "6.2"
D137V2, continuous
D137V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF568 MUTATED      7    3
  ZNF568 WILD-TYPE  147   65
        clus
vv       ZNF568 MUTATED ZNF568 WILD-TYPE
  COLON               7              147
  RECTUM              3               65
D137V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF568 MUTATED      4    6
  ZNF568 WILD-TYPE  113  101
        clus
vv       ZNF568 MUTATED ZNF568 WILD-TYPE
  FEMALE              6              101
  MALE                4              113
D137V5, multiclass
                                clus
vv                               ZNF568 MUTATED ZNF568 WILD-TYPE
  COLON ADENOCARCINOMA                        5              123
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D137V6, multiclass
    clus
vv   ZNF568 MUTATED ZNF568 WILD-TYPE
  T1              1                8
  T2              2               45
  T3              4              146
  T4              3               14
D137V7, multiclass
    clus
vv   ZNF568 MUTATED ZNF568 WILD-TYPE
  N0              7              127
  N1              0               44
  N2              3               43
D137V8, multiclass
     clus
vv    ZNF568 MUTATED ZNF568 WILD-TYPE
  M0               9              180
  M1               1               30
  M1A              0                1
D137V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF568 MUTATED     10    0
  ZNF568 WILD-TYPE  206    8
     clus
vv    ZNF568 MUTATED ZNF568 WILD-TYPE
  NO               0                8
  YES             10              206

Clustering(138) Variable = NRG1 MUTATION ANALYSIS
D138V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE"   "NRG1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "NRG1 MUTATED"   "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"NRG1 WILD-TYPE"   "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE"   "NRG1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "NRG1 MUTATED"   "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"NRG1 WILD-TYPE"   "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE"   "NRG1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "NRG1 MUTATED"   "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"NRG1 WILD-TYPE"   "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
[1] "hr="     "7.7e+07"
D138V2, continuous
D138V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRG1 MUTATED      8    5
  NRG1 WILD-TYPE  146   63
        clus
vv       NRG1 MUTATED NRG1 WILD-TYPE
  COLON             8            146
  RECTUM            5             63
D138V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRG1 MUTATED      9    4
  NRG1 WILD-TYPE  108  103
        clus
vv       NRG1 MUTATED NRG1 WILD-TYPE
  FEMALE            4            103
  MALE              9            108
D138V5, multiclass
                                clus
vv                               NRG1 MUTATED NRG1 WILD-TYPE
  COLON ADENOCARCINOMA                      7            121
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     5             52
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D138V6, multiclass
    clus
vv   NRG1 MUTATED NRG1 WILD-TYPE
  T1            1              8
  T2            3             44
  T3            8            142
  T4            1             16
D138V7, multiclass
    clus
vv   NRG1 MUTATED NRG1 WILD-TYPE
  N0            9            125
  N1            2             42
  N2            2             44
D138V8, multiclass
     clus
vv    NRG1 MUTATED NRG1 WILD-TYPE
  M0            11            178
  M1             1             30
  M1A            0              1
D138V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRG1 MUTATED     13    0
  NRG1 WILD-TYPE  203    8
     clus
vv    NRG1 MUTATED NRG1 WILD-TYPE
  NO             0              8
  YES           13            203

Clustering(139) Variable = KCNH7 MUTATION ANALYSIS
D139V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE"   "KCNH7 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "KCNH7 MUTATED"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE"   "KCNH7 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "KCNH7 MUTATED"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE"   "KCNH7 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "KCNH7 MUTATED"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
[1] "hr=" "1.6"
D139V2, continuous
D139V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNH7 MUTATED     10    3
  KCNH7 WILD-TYPE  144   65
        clus
vv       KCNH7 MUTATED KCNH7 WILD-TYPE
  COLON             10             144
  RECTUM             3              65
D139V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNH7 MUTATED      6    8
  KCNH7 WILD-TYPE  111   99
        clus
vv       KCNH7 MUTATED KCNH7 WILD-TYPE
  FEMALE             8              99
  MALE               6             111
D139V5, multiclass
                                clus
vv                               KCNH7 MUTATED KCNH7 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              5              19
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D139V6, multiclass
    clus
vv   KCNH7 MUTATED KCNH7 WILD-TYPE
  T1             1               8
  T2             3              44
  T3             6             144
  T4             3              14
D139V7, multiclass
    clus
vv   KCNH7 MUTATED KCNH7 WILD-TYPE
  N0            11             123
  N1             2              42
  N2             1              45
D139V8, multiclass
     clus
vv    KCNH7 MUTATED KCNH7 WILD-TYPE
  M0             12             177
  M1              0              31
  M1A             1               0
D139V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNH7 MUTATED     13    1
  KCNH7 WILD-TYPE  203    7
     clus
vv    KCNH7 MUTATED KCNH7 WILD-TYPE
  NO              1               7
  YES            13             203

Clustering(140) Variable = P2RY10 MUTATION ANALYSIS
D140V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
[1] "hr=" "6"  
D140V2, continuous
D140V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  P2RY10 MUTATED      6    1
  P2RY10 WILD-TYPE  148   67
        clus
vv       P2RY10 MUTATED P2RY10 WILD-TYPE
  COLON               6              148
  RECTUM              1               67
D140V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  P2RY10 MUTATED      4    3
  P2RY10 WILD-TYPE  113  104
        clus
vv       P2RY10 MUTATED P2RY10 WILD-TYPE
  FEMALE              3              104
  MALE                4              113
D140V5, multiclass
                                clus
vv                               P2RY10 MUTATED P2RY10 WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D140V6, multiclass
    clus
vv   P2RY10 MUTATED P2RY10 WILD-TYPE
  T1              0                9
  T2              1               46
  T3              4              146
  T4              2               15
D140V7, multiclass
    clus
vv   P2RY10 MUTATED P2RY10 WILD-TYPE
  N0              5              129
  N1              2               42
  N2              0               46
D140V8, multiclass
     clus
vv    P2RY10 MUTATED P2RY10 WILD-TYPE
  M0               6              183
  M1               0               31
  M1A              0                1
D140V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  P2RY10 MUTATED      6    1
  P2RY10 WILD-TYPE  210    7
     clus
vv    P2RY10 MUTATED P2RY10 WILD-TYPE
  NO               1                7
  YES              6              210

Clustering(141) Variable = PCDHA10 MUTATION ANALYSIS
D141V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE"   "PCDHA10 MUTATED" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"PCDHA10 WILD-TYPE"   "PCDHA10 MUTATED" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "PCDHA10 MUTATED" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE"   "PCDHA10 MUTATED" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "PCDHA10 MUTATED" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE"   "PCDHA10 MUTATED" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"PCDHA10 WILD-TYPE"   "PCDHA10 MUTATED" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "PCDHA10 MUTATED" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE"   "PCDHA10 MUTATED" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "PCDHA10 MUTATED" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE"   "PCDHA10 MUTATED" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"PCDHA10 WILD-TYPE"   "PCDHA10 MUTATED" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "PCDHA10 MUTATED" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE"   "PCDHA10 MUTATED" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "PCDHA10 MUTATED" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
[1] "hr=" "3.4"
D141V2, continuous
D141V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PCDHA10 MUTATED      8    2
  PCDHA10 WILD-TYPE  146   66
        clus
vv       PCDHA10 MUTATED PCDHA10 WILD-TYPE
  COLON                8               146
  RECTUM               2                66
D141V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PCDHA10 MUTATED      4    6
  PCDHA10 WILD-TYPE  113  101
        clus
vv       PCDHA10 MUTATED PCDHA10 WILD-TYPE
  FEMALE               6               101
  MALE                 4               113
D141V5, multiclass
                                clus
vv                               PCDHA10 MUTATED PCDHA10 WILD-TYPE
  COLON ADENOCARCINOMA                         5               123
  COLON MUCINOUS ADENOCARCINOMA                3                21
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D141V6, multiclass
    clus
vv   PCDHA10 MUTATED PCDHA10 WILD-TYPE
  T1               0                 9
  T2               3                44
  T3               4               146
  T4               3                14
D141V7, multiclass
    clus
vv   PCDHA10 MUTATED PCDHA10 WILD-TYPE
  N0               9               125
  N1               1                43
  N2               0                46
D141V8, multiclass
     clus
vv    PCDHA10 MUTATED PCDHA10 WILD-TYPE
  M0                9               180
  M1                1                30
  M1A               0                 1
D141V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PCDHA10 MUTATED     10    0
  PCDHA10 WILD-TYPE  206    8
     clus
vv    PCDHA10 MUTATED PCDHA10 WILD-TYPE
  NO                0                 8
  YES              10               206

Clustering(142) Variable = EIF4A2 MUTATION ANALYSIS
D142V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"EIF4A2 WILD-TYPE"   "EIF4A2 MUTATED" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE"   "EIF4A2 MUTATED" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"EIF4A2 WILD-TYPE"   "EIF4A2 MUTATED" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE"   "EIF4A2 MUTATED" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"EIF4A2 WILD-TYPE"   "EIF4A2 MUTATED" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE"   "EIF4A2 MUTATED" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
[1] "Remove cluster labels:" "EIF4A2 MUTATED"        
clus
  EIF4A2 MUTATED EIF4A2 WILD-TYPE 
               2              118 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P       TCGA-AA-A01Q 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T       TCGA-AA-A01V 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024       TCGA-AA-A029 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02O 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F       TCGA-AA-A03J 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689       TCGA-AF-2691 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A020       TCGA-AG-A025 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N       TCGA-AG-A02X 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A032       TCGA-AG-A036 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
D142V2, continuous
D142V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  EIF4A2 MUTATED      4    1
  EIF4A2 WILD-TYPE  150   67
        clus
vv       EIF4A2 MUTATED EIF4A2 WILD-TYPE
  COLON               4              150
  RECTUM              1               67
D142V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  EIF4A2 MUTATED      2    3
  EIF4A2 WILD-TYPE  115  104
        clus
vv       EIF4A2 MUTATED EIF4A2 WILD-TYPE
  FEMALE              3              104
  MALE                2              115
D142V5, multiclass
                                clus
vv                               EIF4A2 MUTATED EIF4A2 WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D142V6, multiclass
    clus
vv   EIF4A2 MUTATED EIF4A2 WILD-TYPE
  T1              0                9
  T2              1               46
  T3              3              147
  T4              1               16
D142V7, multiclass
    clus
vv   EIF4A2 MUTATED EIF4A2 WILD-TYPE
  N0              4              130
  N1              1               43
  N2              0               46
D142V8, multiclass
     clus
vv    EIF4A2 MUTATED EIF4A2 WILD-TYPE
  M0               4              185
  M1               1               30
  M1A              0                1
D142V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  EIF4A2 MUTATED      5    0
  EIF4A2 WILD-TYPE  211    8
     clus
vv    EIF4A2 MUTATED EIF4A2 WILD-TYPE
  NO               0                8
  YES              5              211

Clustering(143) Variable = PPP2R2B MUTATION ANALYSIS
D143V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE"   "PPP2R2B MUTATED" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"PPP2R2B WILD-TYPE"   "PPP2R2B MUTATED" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE"   "PPP2R2B MUTATED" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"PPP2R2B WILD-TYPE"   "PPP2R2B MUTATED" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE"   "PPP2R2B MUTATED" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"PPP2R2B WILD-TYPE"   "PPP2R2B MUTATED" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
[1] "Remove cluster labels:" "PPP2R2B MUTATED"       
clus
  PPP2R2B MUTATED PPP2R2B WILD-TYPE 
                2               118 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3939 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3952 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977        TCGA-AA-3986 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q        TCGA-AA-A00R 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A010 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F        TCGA-AA-A01G 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P        TCGA-AA-A01Q 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T        TCGA-AA-A01V 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024        TCGA-AA-A029 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02O 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F        TCGA-AA-A03J 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689        TCGA-AF-2691 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3581 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587        TCGA-AG-3599 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3887 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3999        TCGA-AG-4001 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-A002        TCGA-AG-A008 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A00C        TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A014        TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020        TCGA-AG-A025 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02N        TCGA-AG-A02X 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A032        TCGA-AG-A036 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
D143V2, continuous
D143V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PPP2R2B MUTATED      1    2
  PPP2R2B WILD-TYPE  153   66
        clus
vv       PPP2R2B MUTATED PPP2R2B WILD-TYPE
  COLON                1               153
  RECTUM               2                66
D143V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PPP2R2B MUTATED      0    3
  PPP2R2B WILD-TYPE  117  104
        clus
vv       PPP2R2B MUTATED PPP2R2B WILD-TYPE
  FEMALE               3               104
  MALE                 0               117
D143V5, multiclass
                                clus
vv                               PPP2R2B MUTATED PPP2R2B WILD-TYPE
  COLON ADENOCARCINOMA                         0               128
  COLON MUCINOUS ADENOCARCINOMA                1                23
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D143V6, multiclass
    clus
vv   PPP2R2B MUTATED PPP2R2B WILD-TYPE
  T1               2                 7
  T2               0                47
  T3               1               149
  T4               0                17
D143V7, multiclass
    clus
vv   PPP2R2B MUTATED PPP2R2B WILD-TYPE
  N0               3               131
  N1               0                44
  N2               0                46
D143V8, multiclass
     clus
vv    PPP2R2B MUTATED PPP2R2B WILD-TYPE
  M0                3               186
  M1                0                31
  M1A               0                 1
D143V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PPP2R2B MUTATED      3    0
  PPP2R2B WILD-TYPE  213    8
     clus
vv    PPP2R2B MUTATED PPP2R2B WILD-TYPE
  NO                0                 8
  YES               3               213

Clustering(144) Variable = NRXN3 MUTATION ANALYSIS
D144V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE"   "NRXN3 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE"   "NRXN3 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE"   "NRXN3 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
[1] "hr=" "1.2"
D144V2, continuous
D144V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NRXN3 MUTATED     15    2
  NRXN3 WILD-TYPE  139   66
        clus
vv       NRXN3 MUTATED NRXN3 WILD-TYPE
  COLON             15             139
  RECTUM             2              66
D144V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NRXN3 MUTATED     10    7
  NRXN3 WILD-TYPE  107  100
        clus
vv       NRXN3 MUTATED NRXN3 WILD-TYPE
  FEMALE             7             100
  MALE              10             107
D144V5, multiclass
                                clus
vv                               NRXN3 MUTATED NRXN3 WILD-TYPE
  COLON ADENOCARCINOMA                      11             117
  COLON MUCINOUS ADENOCARCINOMA              4              20
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D144V6, multiclass
    clus
vv   NRXN3 MUTATED NRXN3 WILD-TYPE
  T1             0               9
  T2             5              42
  T3            10             140
  T4             2              15
D144V7, multiclass
    clus
vv   NRXN3 MUTATED NRXN3 WILD-TYPE
  N0            12             122
  N1             4              40
  N2             1              45
D144V8, multiclass
     clus
vv    NRXN3 MUTATED NRXN3 WILD-TYPE
  M0             16             173
  M1              0              31
  M1A             0               1
D144V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NRXN3 MUTATED     16    1
  NRXN3 WILD-TYPE  200    7
     clus
vv    NRXN3 MUTATED NRXN3 WILD-TYPE
  NO              1               7
  YES            16             200

Clustering(145) Variable = DCHS2 MUTATION ANALYSIS
D145V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE"   "DCHS2 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DCHS2 WILD-TYPE"   "DCHS2 MUTATED"   "DCHS2 MUTATED"   "DCHS2 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE"   "DCHS2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DCHS2 WILD-TYPE"   "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE"   "DCHS2 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DCHS2 WILD-TYPE"   "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE"   "DCHS2 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DCHS2 WILD-TYPE"   "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE"   "DCHS2 MUTATED" "DCHS2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
  "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE"   "DCHS2 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DCHS2 WILD-TYPE"   "DCHS2 MUTATED"   "DCHS2 MUTATED"   "DCHS2 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE"   "DCHS2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DCHS2 WILD-TYPE"   "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE"   "DCHS2 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DCHS2 WILD-TYPE"   "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE"   "DCHS2 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DCHS2 WILD-TYPE"   "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE"   "DCHS2 MUTATED" "DCHS2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
  "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE"   "DCHS2 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DCHS2 WILD-TYPE"   "DCHS2 MUTATED"   "DCHS2 MUTATED"   "DCHS2 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE"   "DCHS2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DCHS2 WILD-TYPE"   "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE"   "DCHS2 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DCHS2 WILD-TYPE"   "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE"   "DCHS2 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DCHS2 WILD-TYPE"   "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE"   "DCHS2 MUTATED" "DCHS2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
  "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
[1] "hr=" "2.6"
D145V2, continuous
D145V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DCHS2 MUTATED     19    5
  DCHS2 WILD-TYPE  135   63
        clus
vv       DCHS2 MUTATED DCHS2 WILD-TYPE
  COLON             19             135
  RECTUM             5              63
D145V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DCHS2 MUTATED     10   14
  DCHS2 WILD-TYPE  107   93
        clus
vv       DCHS2 MUTATED DCHS2 WILD-TYPE
  FEMALE            14              93
  MALE              10             107
D145V5, multiclass
                                clus
vv                               DCHS2 MUTATED DCHS2 WILD-TYPE
  COLON ADENOCARCINOMA                      12             116
  COLON MUCINOUS ADENOCARCINOMA              7              17
  RECTAL ADENOCARCINOMA                      5              52
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D145V6, multiclass
    clus
vv   DCHS2 MUTATED DCHS2 WILD-TYPE
  T1             1               8
  T2             3              44
  T3            14             136
  T4             6              11
D145V7, multiclass
    clus
vv   DCHS2 MUTATED DCHS2 WILD-TYPE
  N0            16             118
  N1             3              41
  N2             5              41
D145V8, multiclass
     clus
vv    DCHS2 MUTATED DCHS2 WILD-TYPE
  M0             21             168
  M1              1              30
  M1A             1               0
D145V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DCHS2 MUTATED     24    0
  DCHS2 WILD-TYPE  192    8
     clus
vv    DCHS2 MUTATED DCHS2 WILD-TYPE
  NO              0               8
  YES            24             192

Clustering(146) Variable = GABRA5 MUTATION ANALYSIS
D146V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GABRA5 MUTATED"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GABRA5 MUTATED"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GABRA5 MUTATED"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
[1] "hr=" "2.9"
D146V2, continuous
D146V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRA5 MUTATED      8    1
  GABRA5 WILD-TYPE  146   67
        clus
vv       GABRA5 MUTATED GABRA5 WILD-TYPE
  COLON               8              146
  RECTUM              1               67
D146V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRA5 MUTATED      4    5
  GABRA5 WILD-TYPE  113  102
        clus
vv       GABRA5 MUTATED GABRA5 WILD-TYPE
  FEMALE              5              102
  MALE                4              113
D146V5, multiclass
                                clus
vv                               GABRA5 MUTATED GABRA5 WILD-TYPE
  COLON ADENOCARCINOMA                        7              121
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D146V6, multiclass
    clus
vv   GABRA5 MUTATED GABRA5 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              5              145
  T4              2               15
D146V7, multiclass
    clus
vv   GABRA5 MUTATED GABRA5 WILD-TYPE
  N0              6              128
  N1              2               42
  N2              1               45
D146V8, multiclass
     clus
vv    GABRA5 MUTATED GABRA5 WILD-TYPE
  M0               8              181
  M1               1               30
  M1A              0                1
D146V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRA5 MUTATED      9    0
  GABRA5 WILD-TYPE  207    8
     clus
vv    GABRA5 MUTATED GABRA5 WILD-TYPE
  NO               0                8
  YES              9              207

Clustering(147) Variable = TGFBR2 MUTATION ANALYSIS
D147V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "TGFBR2 MUTATED" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TGFBR2 MUTATED" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "TGFBR2 MUTATED"   "TGFBR2 MUTATED" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
  "TGFBR2 MUTATED" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE"   "TGFBR2 MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "TGFBR2 MUTATED" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TGFBR2 MUTATED" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "TGFBR2 MUTATED"   "TGFBR2 MUTATED" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
  "TGFBR2 MUTATED" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE"   "TGFBR2 MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "TGFBR2 MUTATED" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TGFBR2 MUTATED" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "TGFBR2 MUTATED"   "TGFBR2 MUTATED" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
  "TGFBR2 MUTATED" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE"   "TGFBR2 MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
[1] "hr=" "1"  
D147V2, continuous
D147V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TGFBR2 MUTATED      7    0
  TGFBR2 WILD-TYPE  147   68
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  COLON               7              147
  RECTUM              0               68
D147V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TGFBR2 MUTATED      3    4
  TGFBR2 WILD-TYPE  114  103
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  FEMALE              4              103
  MALE                3              114
D147V5, multiclass
                                clus
vv                               TGFBR2 MUTATED TGFBR2 WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               3               21
  RECTAL ADENOCARCINOMA                       0               57
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D147V6, multiclass
    clus
vv   TGFBR2 MUTATED TGFBR2 WILD-TYPE
  T1              0                9
  T2              1               46
  T3              5              145
  T4              1               16
D147V7, multiclass
    clus
vv   TGFBR2 MUTATED TGFBR2 WILD-TYPE
  N0              5              129
  N1              0               44
  N2              2               44
D147V8, multiclass
     clus
vv    TGFBR2 MUTATED TGFBR2 WILD-TYPE
  M0               7              182
  M1               0               31
  M1A              0                1
D147V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TGFBR2 MUTATED      7    0
  TGFBR2 WILD-TYPE  209    8
     clus
vv    TGFBR2 MUTATED TGFBR2 WILD-TYPE
  NO               0                8
  YES              7              209

Clustering(148) Variable = OR8B4 MUTATION ANALYSIS
D148V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "OR8B4 MUTATED" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR8B4 MUTATED" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE"   "OR8B4 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR8B4 WILD-TYPE"   "OR8B4 MUTATED" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "OR8B4 MUTATED" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR8B4 MUTATED" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE"   "OR8B4 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR8B4 WILD-TYPE"   "OR8B4 MUTATED" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "OR8B4 MUTATED" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR8B4 MUTATED" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE"   "OR8B4 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR8B4 WILD-TYPE"   "OR8B4 MUTATED" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
[1] "hr=" "1.5"
D148V2, continuous
D148V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8B4 MUTATED      5    0
  OR8B4 WILD-TYPE  149   68
        clus
vv       OR8B4 MUTATED OR8B4 WILD-TYPE
  COLON              5             149
  RECTUM             0              68
D148V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8B4 MUTATED      2    4
  OR8B4 WILD-TYPE  115  103
        clus
vv       OR8B4 MUTATED OR8B4 WILD-TYPE
  FEMALE             4             103
  MALE               2             115
D148V5, multiclass
                                clus
vv                               OR8B4 MUTATED OR8B4 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      0              57
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D148V6, multiclass
    clus
vv   OR8B4 MUTATED OR8B4 WILD-TYPE
  T1             0               9
  T2             1              46
  T3             4             146
  T4             1              16
D148V7, multiclass
    clus
vv   OR8B4 MUTATED OR8B4 WILD-TYPE
  N0             5             129
  N1             1              43
  N2             0              46
D148V8, multiclass
     clus
vv    OR8B4 MUTATED OR8B4 WILD-TYPE
  M0              6             183
  M1              0              31
  M1A             0               1
D148V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8B4 MUTATED      6    0
  OR8B4 WILD-TYPE  210    8
     clus
vv    OR8B4 MUTATED OR8B4 WILD-TYPE
  NO              0               8
  YES             6             210

Clustering(149) Variable = DACH2 MUTATION ANALYSIS
D149V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D149V2, continuous
D149V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DACH2 MUTATED      8    4
  DACH2 WILD-TYPE  146   64
        clus
vv       DACH2 MUTATED DACH2 WILD-TYPE
  COLON              8             146
  RECTUM             4              64
D149V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DACH2 MUTATED      5    7
  DACH2 WILD-TYPE  112  100
        clus
vv       DACH2 MUTATED DACH2 WILD-TYPE
  FEMALE             7             100
  MALE               5             112
D149V5, multiclass
                                clus
vv                               DACH2 MUTATED DACH2 WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D149V6, multiclass
    clus
vv   DACH2 MUTATED DACH2 WILD-TYPE
  T1             0               9
  T2             4              43
  T3             5             145
  T4             3              14
D149V7, multiclass
    clus
vv   DACH2 MUTATED DACH2 WILD-TYPE
  N0             9             125
  N1             3              41
  N2             0              46
D149V8, multiclass
     clus
vv    DACH2 MUTATED DACH2 WILD-TYPE
  M0             10             179
  M1              1              30
  M1A             0               1
D149V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DACH2 MUTATED     12    0
  DACH2 WILD-TYPE  204    8
     clus
vv    DACH2 MUTATED DACH2 WILD-TYPE
  NO              0               8
  YES            12             204

Clustering(150) Variable = MYO16 MUTATION ANALYSIS
D150V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "MYO16 MUTATED" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE"   "MYO16 MUTATED" "MYO16 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE"   "MYO16 MUTATED"   "MYO16 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "MYO16 MUTATED" "MYO16 WILD-TYPE"   "MYO16 MUTATED" "MYO16 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MYO16 WILD-TYPE"   "MYO16 MUTATED" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "MYO16 MUTATED" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MYO16 MUTATED" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "MYO16 MUTATED" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE"   "MYO16 MUTATED" "MYO16 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE"   "MYO16 MUTATED"   "MYO16 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "MYO16 MUTATED" "MYO16 WILD-TYPE"   "MYO16 MUTATED" "MYO16 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MYO16 WILD-TYPE"   "MYO16 MUTATED" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "MYO16 MUTATED" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MYO16 MUTATED" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "MYO16 MUTATED" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE"   "MYO16 MUTATED" "MYO16 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE"   "MYO16 MUTATED"   "MYO16 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "MYO16 MUTATED" "MYO16 WILD-TYPE"   "MYO16 MUTATED" "MYO16 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MYO16 WILD-TYPE"   "MYO16 MUTATED" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "MYO16 MUTATED" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MYO16 MUTATED" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
[1] "hr=" "1.2"
D150V2, continuous
D150V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYO16 MUTATED     15    2
  MYO16 WILD-TYPE  139   66
        clus
vv       MYO16 MUTATED MYO16 WILD-TYPE
  COLON             15             139
  RECTUM             2              66
D150V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYO16 MUTATED      9    8
  MYO16 WILD-TYPE  108   99
        clus
vv       MYO16 MUTATED MYO16 WILD-TYPE
  FEMALE             8              99
  MALE               9             108
D150V5, multiclass
                                clus
vv                               MYO16 MUTATED MYO16 WILD-TYPE
  COLON ADENOCARCINOMA                       9             119
  COLON MUCINOUS ADENOCARCINOMA              5              19
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D150V6, multiclass
    clus
vv   MYO16 MUTATED MYO16 WILD-TYPE
  T1             0               9
  T2             4              43
  T3             9             141
  T4             4              13
D150V7, multiclass
    clus
vv   MYO16 MUTATED MYO16 WILD-TYPE
  N0            14             120
  N1             1              43
  N2             2              44
D150V8, multiclass
     clus
vv    MYO16 MUTATED MYO16 WILD-TYPE
  M0             15             174
  M1              1              30
  M1A             0               1
D150V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYO16 MUTATED     17    0
  MYO16 WILD-TYPE  199    8
     clus
vv    MYO16 MUTATED MYO16 WILD-TYPE
  NO              0               8
  YES            17             199

Clustering(151) Variable = IL18R1 MUTATION ANALYSIS
D151V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE"   "IL18R1 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE"   "IL18R1 MUTATED" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
  "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"IL18R1 WILD-TYPE"   "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE"   "IL18R1 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE"   "IL18R1 MUTATED" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
  "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"IL18R1 WILD-TYPE"   "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE"   "IL18R1 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE"   "IL18R1 MUTATED" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
  "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"IL18R1 WILD-TYPE"   "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D151V2, continuous
D151V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  IL18R1 MUTATED      8    2
  IL18R1 WILD-TYPE  146   66
        clus
vv       IL18R1 MUTATED IL18R1 WILD-TYPE
  COLON               8              146
  RECTUM              2               66
D151V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  IL18R1 MUTATED      5    5
  IL18R1 WILD-TYPE  112  102
        clus
vv       IL18R1 MUTATED IL18R1 WILD-TYPE
  FEMALE              5              102
  MALE                5              112
D151V5, multiclass
                                clus
vv                               IL18R1 MUTATED IL18R1 WILD-TYPE
  COLON ADENOCARCINOMA                        5              123
  COLON MUCINOUS ADENOCARCINOMA               3               21
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D151V6, multiclass
    clus
vv   IL18R1 MUTATED IL18R1 WILD-TYPE
  T1              2                7
  T2              2               45
  T3              4              146
  T4              2               15
D151V7, multiclass
    clus
vv   IL18R1 MUTATED IL18R1 WILD-TYPE
  N0              5              129
  N1              3               41
  N2              2               44
D151V8, multiclass
     clus
vv    IL18R1 MUTATED IL18R1 WILD-TYPE
  M0              10              179
  M1               0               31
  M1A              0                1
D151V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  IL18R1 MUTATED     10    0
  IL18R1 WILD-TYPE  206    8
     clus
vv    IL18R1 MUTATED IL18R1 WILD-TYPE
  NO               0                8
  YES             10              206

Clustering(152) Variable = ABCA12 MUTATION ANALYSIS
D152V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE"   "ABCA12 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
  "ABCA12 MUTATED" "ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
  "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE"   "ABCA12 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
  "ABCA12 MUTATED" "ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
  "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE"   "ABCA12 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
  "ABCA12 MUTATED" "ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
  "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
[1] "hr=" "1.8"
D152V2, continuous
D152V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ABCA12 MUTATED     18    4
  ABCA12 WILD-TYPE  136   64
        clus
vv       ABCA12 MUTATED ABCA12 WILD-TYPE
  COLON              18              136
  RECTUM              4               64
D152V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ABCA12 MUTATED     12   10
  ABCA12 WILD-TYPE  105   97
        clus
vv       ABCA12 MUTATED ABCA12 WILD-TYPE
  FEMALE             10               97
  MALE               12              105
D152V5, multiclass
                                clus
vv                               ABCA12 MUTATED ABCA12 WILD-TYPE
  COLON ADENOCARCINOMA                       13              115
  COLON MUCINOUS ADENOCARCINOMA               5               19
  RECTAL ADENOCARCINOMA                       4               53
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D152V6, multiclass
    clus
vv   ABCA12 MUTATED ABCA12 WILD-TYPE
  T1              1                8
  T2              6               41
  T3             12              138
  T4              3               14
D152V7, multiclass
    clus
vv   ABCA12 MUTATED ABCA12 WILD-TYPE
  N0             16              118
  N1              4               40
  N2              2               44
D152V8, multiclass
     clus
vv    ABCA12 MUTATED ABCA12 WILD-TYPE
  M0              21              168
  M1               0               31
  M1A              0                1
D152V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ABCA12 MUTATED     22    0
  ABCA12 WILD-TYPE  194    8
     clus
vv    ABCA12 MUTATED ABCA12 WILD-TYPE
  NO               0                8
  YES             22              194

Clustering(153) Variable = HTR3B MUTATION ANALYSIS
D153V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"HTR3B WILD-TYPE"   "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"HTR3B WILD-TYPE"   "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"HTR3B WILD-TYPE"   "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"HTR3B WILD-TYPE"   "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"HTR3B WILD-TYPE"   "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"HTR3B WILD-TYPE"   "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"HTR3B WILD-TYPE"   "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"HTR3B WILD-TYPE"   "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"HTR3B WILD-TYPE"   "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
[1] "hr=" "1.8"
D153V2, continuous
D153V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HTR3B MUTATED      4    2
  HTR3B WILD-TYPE  150   66
        clus
vv       HTR3B MUTATED HTR3B WILD-TYPE
  COLON              4             150
  RECTUM             2              66
D153V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HTR3B MUTATED      4    2
  HTR3B WILD-TYPE  113  105
        clus
vv       HTR3B MUTATED HTR3B WILD-TYPE
  FEMALE             2             105
  MALE               4             113
D153V5, multiclass
                                clus
vv                               HTR3B MUTATED HTR3B WILD-TYPE
  COLON ADENOCARCINOMA                       3             125
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D153V6, multiclass
    clus
vv   HTR3B MUTATED HTR3B WILD-TYPE
  T1             0               9
  T2             1              46
  T3             3             147
  T4             2              15
D153V7, multiclass
    clus
vv   HTR3B MUTATED HTR3B WILD-TYPE
  N0             3             131
  N1             2              42
  N2             1              45
D153V8, multiclass
     clus
vv    HTR3B MUTATED HTR3B WILD-TYPE
  M0              6             183
  M1              0              31
  M1A             0               1
D153V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HTR3B MUTATED      6    0
  HTR3B WILD-TYPE  210    8
     clus
vv    HTR3B MUTATED HTR3B WILD-TYPE
  NO              0               8
  YES             6             210

Clustering(154) Variable = LASS3 MUTATION ANALYSIS
D154V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LASS3 WILD-TYPE"   "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE"   "LASS3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LASS3 WILD-TYPE"   "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LASS3 WILD-TYPE"   "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE"   "LASS3 MUTATED" "LASS3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LASS3 WILD-TYPE"   "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE"   "LASS3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LASS3 WILD-TYPE"   "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LASS3 WILD-TYPE"   "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE"   "LASS3 MUTATED" "LASS3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LASS3 WILD-TYPE"   "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE"   "LASS3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LASS3 WILD-TYPE"   "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LASS3 WILD-TYPE"   "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE"   "LASS3 MUTATED" "LASS3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
[1] "hr=" "1.7"
D154V2, continuous
D154V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LASS3 MUTATED      6    3
  LASS3 WILD-TYPE  148   65
        clus
vv       LASS3 MUTATED LASS3 WILD-TYPE
  COLON              6             148
  RECTUM             3              65
D154V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LASS3 MUTATED      4    5
  LASS3 WILD-TYPE  113  102
        clus
vv       LASS3 MUTATED LASS3 WILD-TYPE
  FEMALE             5             102
  MALE               4             113
D154V5, multiclass
                                clus
vv                               LASS3 MUTATED LASS3 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              0              24
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D154V6, multiclass
    clus
vv   LASS3 MUTATED LASS3 WILD-TYPE
  T1             1               8
  T2             3              44
  T3             3             147
  T4             2              15
D154V7, multiclass
    clus
vv   LASS3 MUTATED LASS3 WILD-TYPE
  N0             8             126
  N1             1              43
  N2             0              46
D154V8, multiclass
     clus
vv    LASS3 MUTATED LASS3 WILD-TYPE
  M0              8             181
  M1              0              31
  M1A             0               1
D154V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LASS3 MUTATED      9    0
  LASS3 WILD-TYPE  207    8
     clus
vv    LASS3 MUTATED LASS3 WILD-TYPE
  NO              0               8
  YES             9             207

Clustering(155) Variable = MAPK10 MUTATION ANALYSIS
D155V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE"   "MAPK10 MUTATED" "MAPK10 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE"   "MAPK10 MUTATED" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "MAPK10 MUTATED" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"MAPK10 WILD-TYPE"   "MAPK10 MUTATED" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "MAPK10 MUTATED" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE"   "MAPK10 MUTATED" "MAPK10 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE"   "MAPK10 MUTATED" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "MAPK10 MUTATED" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"MAPK10 WILD-TYPE"   "MAPK10 MUTATED" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "MAPK10 MUTATED" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE"   "MAPK10 MUTATED" "MAPK10 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE"   "MAPK10 MUTATED" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "MAPK10 MUTATED" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"MAPK10 WILD-TYPE"   "MAPK10 MUTATED" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "MAPK10 MUTATED" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D155V2, continuous
D155V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAPK10 MUTATED      4    4
  MAPK10 WILD-TYPE  150   64
        clus
vv       MAPK10 MUTATED MAPK10 WILD-TYPE
  COLON               4              150
  RECTUM              4               64
D155V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAPK10 MUTATED      4    4
  MAPK10 WILD-TYPE  113  103
        clus
vv       MAPK10 MUTATED MAPK10 WILD-TYPE
  FEMALE              4              103
  MALE                4              113
D155V5, multiclass
                                clus
vv                               MAPK10 MUTATED MAPK10 WILD-TYPE
  COLON ADENOCARCINOMA                        3              125
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       4               53
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D155V6, multiclass
    clus
vv   MAPK10 MUTATED MAPK10 WILD-TYPE
  T1              1                8
  T2              2               45
  T3              3              147
  T4              2               15
D155V7, multiclass
    clus
vv   MAPK10 MUTATED MAPK10 WILD-TYPE
  N0              6              128
  N1              0               44
  N2              2               44
D155V8, multiclass
     clus
vv    MAPK10 MUTATED MAPK10 WILD-TYPE
  M0               5              184
  M1               3               28
  M1A              0                1
D155V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAPK10 MUTATED      7    1
  MAPK10 WILD-TYPE  209    7
     clus
vv    MAPK10 MUTATED MAPK10 WILD-TYPE
  NO               1                7
  YES              7              209

Clustering(156) Variable = POSTN MUTATION ANALYSIS
D156V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
  "POSTN MUTATED"   "POSTN MUTATED" "POSTN WILD-TYPE"   "POSTN MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"POSTN WILD-TYPE"   "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
  "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"POSTN WILD-TYPE"   "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
  "POSTN MUTATED"   "POSTN MUTATED" "POSTN WILD-TYPE"   "POSTN MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"POSTN WILD-TYPE"   "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
  "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"POSTN WILD-TYPE"   "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
  "POSTN MUTATED"   "POSTN MUTATED" "POSTN WILD-TYPE"   "POSTN MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"POSTN WILD-TYPE"   "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
  "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"POSTN WILD-TYPE"   "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
[1] "hr=" "5"  
D156V2, continuous
D156V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POSTN MUTATED     11    0
  POSTN WILD-TYPE  143   68
        clus
vv       POSTN MUTATED POSTN WILD-TYPE
  COLON             11             143
  RECTUM             0              68
D156V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POSTN MUTATED      6    5
  POSTN WILD-TYPE  111  102
        clus
vv       POSTN MUTATED POSTN WILD-TYPE
  FEMALE             5             102
  MALE               6             111
D156V5, multiclass
                                clus
vv                               POSTN MUTATED POSTN WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              4              20
  RECTAL ADENOCARCINOMA                      0              57
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D156V6, multiclass
    clus
vv   POSTN MUTATED POSTN WILD-TYPE
  T1             0               9
  T2             2              45
  T3             8             142
  T4             1              16
D156V7, multiclass
    clus
vv   POSTN MUTATED POSTN WILD-TYPE
  N0             9             125
  N1             0              44
  N2             2              44
D156V8, multiclass
     clus
vv    POSTN MUTATED POSTN WILD-TYPE
  M0             10             179
  M1              0              31
  M1A             0               1
D156V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POSTN MUTATED     11    0
  POSTN WILD-TYPE  205    8
     clus
vv    POSTN MUTATED POSTN WILD-TYPE
  NO              0               8
  YES            11             205

Clustering(157) Variable = CHRM2 MUTATION ANALYSIS
D157V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CHRM2 WILD-TYPE"   "CHRM2 MUTATED"   "CHRM2 MUTATED" "CHRM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CHRM2 WILD-TYPE"   "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CHRM2 WILD-TYPE"   "CHRM2 MUTATED"   "CHRM2 MUTATED" "CHRM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CHRM2 WILD-TYPE"   "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CHRM2 WILD-TYPE"   "CHRM2 MUTATED"   "CHRM2 MUTATED" "CHRM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CHRM2 WILD-TYPE"   "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
[1] "hr=" "2.2"
D157V2, continuous
D157V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CHRM2 MUTATED      8    2
  CHRM2 WILD-TYPE  146   66
        clus
vv       CHRM2 MUTATED CHRM2 WILD-TYPE
  COLON              8             146
  RECTUM             2              66
D157V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CHRM2 MUTATED      4    6
  CHRM2 WILD-TYPE  113  101
        clus
vv       CHRM2 MUTATED CHRM2 WILD-TYPE
  FEMALE             6             101
  MALE               4             113
D157V5, multiclass
                                clus
vv                               CHRM2 MUTATED CHRM2 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D157V6, multiclass
    clus
vv   CHRM2 MUTATED CHRM2 WILD-TYPE
  T1             0               9
  T2             1              46
  T3             5             145
  T4             4              13
D157V7, multiclass
    clus
vv   CHRM2 MUTATED CHRM2 WILD-TYPE
  N0             7             127
  N1             1              43
  N2             2              44
D157V8, multiclass
     clus
vv    CHRM2 MUTATED CHRM2 WILD-TYPE
  M0              7             182
  M1              3              28
  M1A             0               1
D157V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CHRM2 MUTATED     10    0
  CHRM2 WILD-TYPE  206    8
     clus
vv    CHRM2 MUTATED CHRM2 WILD-TYPE
  NO              0               8
  YES            10             206

Clustering(158) Variable = DSEL MUTATION ANALYSIS
D158V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE"   "DSEL MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DSEL WILD-TYPE" "DSEL WILD-TYPE"   "DSEL MUTATED"   "DSEL MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE"   "DSEL MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DSEL WILD-TYPE"   "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DSEL WILD-TYPE"   "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DSEL WILD-TYPE"   "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE"   "DSEL MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DSEL WILD-TYPE" "DSEL WILD-TYPE"   "DSEL MUTATED"   "DSEL MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE"   "DSEL MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DSEL WILD-TYPE"   "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DSEL WILD-TYPE"   "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DSEL WILD-TYPE"   "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE"   "DSEL MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DSEL WILD-TYPE" "DSEL WILD-TYPE"   "DSEL MUTATED"   "DSEL MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE"   "DSEL MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DSEL WILD-TYPE"   "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DSEL WILD-TYPE"   "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DSEL WILD-TYPE"   "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
[1] "hr=" "1.1"
D158V2, continuous
D158V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DSEL MUTATED     12    2
  DSEL WILD-TYPE  142   66
        clus
vv       DSEL MUTATED DSEL WILD-TYPE
  COLON            12            142
  RECTUM            2             66
D158V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DSEL MUTATED      5    9
  DSEL WILD-TYPE  112   98
        clus
vv       DSEL MUTATED DSEL WILD-TYPE
  FEMALE            9             98
  MALE              5            112
D158V5, multiclass
                                clus
vv                               DSEL MUTATED DSEL WILD-TYPE
  COLON ADENOCARCINOMA                      8            120
  COLON MUCINOUS ADENOCARCINOMA             4             20
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D158V6, multiclass
    clus
vv   DSEL MUTATED DSEL WILD-TYPE
  T1            1              8
  T2            3             44
  T3            6            144
  T4            3             14
D158V7, multiclass
    clus
vv   DSEL MUTATED DSEL WILD-TYPE
  N0           11            123
  N1            3             41
  N2            0             46
D158V8, multiclass
     clus
vv    DSEL MUTATED DSEL WILD-TYPE
  M0            12            177
  M1             1             30
  M1A            0              1
D158V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DSEL MUTATED     13    1
  DSEL WILD-TYPE  203    7
     clus
vv    DSEL MUTATED DSEL WILD-TYPE
  NO             1              7
  YES           13            203

Clustering(159) Variable = NCAM2 MUTATION ANALYSIS
D159V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NCAM2 WILD-TYPE"   "NCAM2 MUTATED" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NCAM2 MUTATED" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" "NCAM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NCAM2 WILD-TYPE"   "NCAM2 MUTATED" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NCAM2 MUTATED" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NCAM2 WILD-TYPE"   "NCAM2 MUTATED" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NCAM2 MUTATED" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" "NCAM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NCAM2 WILD-TYPE"   "NCAM2 MUTATED" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NCAM2 MUTATED" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NCAM2 WILD-TYPE"   "NCAM2 MUTATED" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NCAM2 MUTATED" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" "NCAM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NCAM2 WILD-TYPE"   "NCAM2 MUTATED" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NCAM2 MUTATED" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
[1] "hr=" "1.5"
D159V2, continuous
D159V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NCAM2 MUTATED      7    5
  NCAM2 WILD-TYPE  147   63
        clus
vv       NCAM2 MUTATED NCAM2 WILD-TYPE
  COLON              7             147
  RECTUM             5              63
D159V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NCAM2 MUTATED      6    6
  NCAM2 WILD-TYPE  111  101
        clus
vv       NCAM2 MUTATED NCAM2 WILD-TYPE
  FEMALE             6             101
  MALE               6             111
D159V5, multiclass
                                clus
vv                               NCAM2 MUTATED NCAM2 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      5              52
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D159V6, multiclass
    clus
vv   NCAM2 MUTATED NCAM2 WILD-TYPE
  T1             2               7
  T2             3              44
  T3             5             145
  T4             2              15
D159V7, multiclass
    clus
vv   NCAM2 MUTATED NCAM2 WILD-TYPE
  N0             9             125
  N1             1              43
  N2             2              44
D159V8, multiclass
     clus
vv    NCAM2 MUTATED NCAM2 WILD-TYPE
  M0             10             179
  M1              1              30
  M1A             0               1
D159V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NCAM2 MUTATED     12    0
  NCAM2 WILD-TYPE  204    8
     clus
vv    NCAM2 MUTATED NCAM2 WILD-TYPE
  NO              0               8
  YES            12             204

Clustering(160) Variable = FSTL5 MUTATION ANALYSIS
D160V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D160V2, continuous
D160V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FSTL5 MUTATED      8    3
  FSTL5 WILD-TYPE  146   65
        clus
vv       FSTL5 MUTATED FSTL5 WILD-TYPE
  COLON              8             146
  RECTUM             3              65
D160V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FSTL5 MUTATED      3    8
  FSTL5 WILD-TYPE  114   99
        clus
vv       FSTL5 MUTATED FSTL5 WILD-TYPE
  FEMALE             8              99
  MALE               3             114
D160V5, multiclass
                                clus
vv                               FSTL5 MUTATED FSTL5 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D160V6, multiclass
    clus
vv   FSTL5 MUTATED FSTL5 WILD-TYPE
  T1             1               8
  T2             1              46
  T3             6             144
  T4             3              14
D160V7, multiclass
    clus
vv   FSTL5 MUTATED FSTL5 WILD-TYPE
  N0             8             126
  N1             2              42
  N2             1              45
D160V8, multiclass
     clus
vv    FSTL5 MUTATED FSTL5 WILD-TYPE
  M0             10             179
  M1              1              30
  M1A             0               1
D160V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FSTL5 MUTATED     11    0
  FSTL5 WILD-TYPE  205    8
     clus
vv    FSTL5 MUTATED FSTL5 WILD-TYPE
  NO              0               8
  YES            11             205

Clustering(161) Variable = TRPS1 MUTATION ANALYSIS
D161V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
[1] "hr=" "1.9"
D161V2, continuous
D161V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPS1 MUTATED     13    4
  TRPS1 WILD-TYPE  141   64
        clus
vv       TRPS1 MUTATED TRPS1 WILD-TYPE
  COLON             13             141
  RECTUM             4              64
D161V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPS1 MUTATED     10    7
  TRPS1 WILD-TYPE  107  100
        clus
vv       TRPS1 MUTATED TRPS1 WILD-TYPE
  FEMALE             7             100
  MALE              10             107
D161V5, multiclass
                                clus
vv                               TRPS1 MUTATED TRPS1 WILD-TYPE
  COLON ADENOCARCINOMA                       9             119
  COLON MUCINOUS ADENOCARCINOMA              4              20
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D161V6, multiclass
    clus
vv   TRPS1 MUTATED TRPS1 WILD-TYPE
  T1             0               9
  T2             4              43
  T3             9             141
  T4             4              13
D161V7, multiclass
    clus
vv   TRPS1 MUTATED TRPS1 WILD-TYPE
  N0            15             119
  N1             1              43
  N2             1              45
D161V8, multiclass
     clus
vv    TRPS1 MUTATED TRPS1 WILD-TYPE
  M0             16             173
  M1              0              31
  M1A             0               1
D161V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPS1 MUTATED     17    0
  TRPS1 WILD-TYPE  199    8
     clus
vv    TRPS1 MUTATED TRPS1 WILD-TYPE
  NO              0               8
  YES            17             199

Clustering(162) Variable = CACNG3 MUTATION ANALYSIS
D162V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "CACNG3 MUTATED" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "CACNG3 MUTATED" "CACNG3 WILD-TYPE"   "CACNG3 MUTATED" "CACNG3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CACNG3 WILD-TYPE"   "CACNG3 MUTATED" "CACNG3 WILD-TYPE"   "CACNG3 MUTATED" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "CACNG3 MUTATED" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "CACNG3 MUTATED" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "CACNG3 MUTATED" "CACNG3 WILD-TYPE"   "CACNG3 MUTATED" "CACNG3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CACNG3 WILD-TYPE"   "CACNG3 MUTATED" "CACNG3 WILD-TYPE"   "CACNG3 MUTATED" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "CACNG3 MUTATED" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "CACNG3 MUTATED" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "CACNG3 MUTATED" "CACNG3 WILD-TYPE"   "CACNG3 MUTATED" "CACNG3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CACNG3 WILD-TYPE"   "CACNG3 MUTATED" "CACNG3 WILD-TYPE"   "CACNG3 MUTATED" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "CACNG3 MUTATED" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D162V2, continuous
D162V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CACNG3 MUTATED      5    3
  CACNG3 WILD-TYPE  149   65
        clus
vv       CACNG3 MUTATED CACNG3 WILD-TYPE
  COLON               5              149
  RECTUM              3               65
D162V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CACNG3 MUTATED      3    5
  CACNG3 WILD-TYPE  114  102
        clus
vv       CACNG3 MUTATED CACNG3 WILD-TYPE
  FEMALE              5              102
  MALE                3              114
D162V5, multiclass
                                clus
vv                               CACNG3 MUTATED CACNG3 WILD-TYPE
  COLON ADENOCARCINOMA                        3              125
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D162V6, multiclass
    clus
vv   CACNG3 MUTATED CACNG3 WILD-TYPE
  T1              1                8
  T2              1               46
  T3              5              145
  T4              1               16
D162V7, multiclass
    clus
vv   CACNG3 MUTATED CACNG3 WILD-TYPE
  N0              6              128
  N1              1               43
  N2              1               45
D162V8, multiclass
     clus
vv    CACNG3 MUTATED CACNG3 WILD-TYPE
  M0               8              181
  M1               0               31
  M1A              0                1
D162V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CACNG3 MUTATED      8    0
  CACNG3 WILD-TYPE  208    8
     clus
vv    CACNG3 MUTATED CACNG3 WILD-TYPE
  NO               0                8
  YES              8              208

Clustering(163) Variable = HCN1 MUTATION ANALYSIS
D163V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE"   "HCN1 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE"   "HCN1 MUTATED" "HCN1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE"   "HCN1 MUTATED" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "HCN1 MUTATED" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "HCN1 MUTATED" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE"   "HCN1 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE"   "HCN1 MUTATED" "HCN1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE"   "HCN1 MUTATED" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "HCN1 MUTATED" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "HCN1 MUTATED" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE"   "HCN1 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE"   "HCN1 MUTATED" "HCN1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE"   "HCN1 MUTATED" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "HCN1 MUTATED" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "HCN1 MUTATED" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
[1] "hr="     "7.5e+07"
D163V2, continuous
D163V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  HCN1 MUTATED      8    2
  HCN1 WILD-TYPE  146   66
        clus
vv       HCN1 MUTATED HCN1 WILD-TYPE
  COLON             8            146
  RECTUM            2             66
D163V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  HCN1 MUTATED      5    5
  HCN1 WILD-TYPE  112  102
        clus
vv       HCN1 MUTATED HCN1 WILD-TYPE
  FEMALE            5            102
  MALE              5            112
D163V5, multiclass
                                clus
vv                               HCN1 MUTATED HCN1 WILD-TYPE
  COLON ADENOCARCINOMA                      6            122
  COLON MUCINOUS ADENOCARCINOMA             2             22
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D163V6, multiclass
    clus
vv   HCN1 MUTATED HCN1 WILD-TYPE
  T1            0              9
  T2            2             45
  T3            5            145
  T4            2             15
D163V7, multiclass
    clus
vv   HCN1 MUTATED HCN1 WILD-TYPE
  N0            8            126
  N1            1             43
  N2            1             45
D163V8, multiclass
     clus
vv    HCN1 MUTATED HCN1 WILD-TYPE
  M0             9            180
  M1             1             30
  M1A            0              1
D163V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  HCN1 MUTATED      9    1
  HCN1 WILD-TYPE  207    7
     clus
vv    HCN1 MUTATED HCN1 WILD-TYPE
  NO             1              7
  YES            9            207

Clustering(164) Variable = KCNA4 MUTATION ANALYSIS
D164V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
[1] "hr=" "1.1"
D164V2, continuous
D164V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNA4 MUTATED     10    2
  KCNA4 WILD-TYPE  144   66
        clus
vv       KCNA4 MUTATED KCNA4 WILD-TYPE
  COLON             10             144
  RECTUM             2              66
D164V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNA4 MUTATED      5    7
  KCNA4 WILD-TYPE  112  100
        clus
vv       KCNA4 MUTATED KCNA4 WILD-TYPE
  FEMALE             7             100
  MALE               5             112
D164V5, multiclass
                                clus
vv                               KCNA4 MUTATED KCNA4 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              4              20
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D164V6, multiclass
    clus
vv   KCNA4 MUTATED KCNA4 WILD-TYPE
  T1             1               8
  T2             2              45
  T3             8             142
  T4             1              16
D164V7, multiclass
    clus
vv   KCNA4 MUTATED KCNA4 WILD-TYPE
  N0             9             125
  N1             2              42
  N2             1              45
D164V8, multiclass
     clus
vv    KCNA4 MUTATED KCNA4 WILD-TYPE
  M0             12             177
  M1              0              31
  M1A             0               1
D164V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNA4 MUTATED     12    0
  KCNA4 WILD-TYPE  204    8
     clus
vv    KCNA4 MUTATED KCNA4 WILD-TYPE
  NO              0               8
  YES            12             204

Clustering(165) Variable = ING1 MUTATION ANALYSIS
D165V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ING1 WILD-TYPE"   "ING1 MUTATED" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE"   "ING1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ING1 MUTATED" "ING1 WILD-TYPE" "ING1 WILD-TYPE"   "ING1 MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE"   "ING1 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE"   "ING1 MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ING1 WILD-TYPE"   "ING1 MUTATED" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE"   "ING1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ING1 MUTATED" "ING1 WILD-TYPE" "ING1 WILD-TYPE"   "ING1 MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE"   "ING1 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE"   "ING1 MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ING1 WILD-TYPE"   "ING1 MUTATED" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE"   "ING1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ING1 MUTATED" "ING1 WILD-TYPE" "ING1 WILD-TYPE"   "ING1 MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE"   "ING1 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE"   "ING1 MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
[1] "hr=" "3.2"
D165V2, continuous
D165V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ING1 MUTATED      5    1
  ING1 WILD-TYPE  149   67
        clus
vv       ING1 MUTATED ING1 WILD-TYPE
  COLON             5            149
  RECTUM            1             67
D165V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ING1 MUTATED      2    4
  ING1 WILD-TYPE  115  103
        clus
vv       ING1 MUTATED ING1 WILD-TYPE
  FEMALE            4            103
  MALE              2            115
D165V5, multiclass
                                clus
vv                               ING1 MUTATED ING1 WILD-TYPE
  COLON ADENOCARCINOMA                      3            125
  COLON MUCINOUS ADENOCARCINOMA             2             22
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D165V6, multiclass
    clus
vv   ING1 MUTATED ING1 WILD-TYPE
  T1            0              9
  T2            0             47
  T3            5            145
  T4            1             16
D165V7, multiclass
    clus
vv   ING1 MUTATED ING1 WILD-TYPE
  N0            1            133
  N1            4             40
  N2            1             45
D165V8, multiclass
     clus
vv    ING1 MUTATED ING1 WILD-TYPE
  M0             5            184
  M1             1             30
  M1A            0              1
D165V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ING1 MUTATED      6    0
  ING1 WILD-TYPE  210    8
     clus
vv    ING1 MUTATED ING1 WILD-TYPE
  NO             0              8
  YES            6            210

Clustering(166) Variable = PSG8 MUTATION ANALYSIS
D166V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE"   "PSG8 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PSG8 WILD-TYPE"   "PSG8 MUTATED" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PSG8 WILD-TYPE"   "PSG8 MUTATED" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE"   "PSG8 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PSG8 WILD-TYPE"   "PSG8 MUTATED" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PSG8 WILD-TYPE"   "PSG8 MUTATED" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE"   "PSG8 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PSG8 WILD-TYPE"   "PSG8 MUTATED" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PSG8 WILD-TYPE"   "PSG8 MUTATED" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
[1] "hr=" "3.7"
D166V2, continuous
D166V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PSG8 MUTATED      8    0
  PSG8 WILD-TYPE  146   68
        clus
vv       PSG8 MUTATED PSG8 WILD-TYPE
  COLON             8            146
  RECTUM            0             68
D166V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PSG8 MUTATED      4    4
  PSG8 WILD-TYPE  113  103
        clus
vv       PSG8 MUTATED PSG8 WILD-TYPE
  FEMALE            4            103
  MALE              4            113
D166V5, multiclass
                                clus
vv                               PSG8 MUTATED PSG8 WILD-TYPE
  COLON ADENOCARCINOMA                      6            122
  COLON MUCINOUS ADENOCARCINOMA             2             22
  RECTAL ADENOCARCINOMA                     0             57
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D166V6, multiclass
    clus
vv   PSG8 MUTATED PSG8 WILD-TYPE
  T1            0              9
  T2            2             45
  T3            4            146
  T4            2             15
D166V7, multiclass
    clus
vv   PSG8 MUTATED PSG8 WILD-TYPE
  N0            5            129
  N1            2             42
  N2            1             45
D166V8, multiclass
     clus
vv    PSG8 MUTATED PSG8 WILD-TYPE
  M0             6            183
  M1             1             30
  M1A            0              1
D166V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PSG8 MUTATED      8    0
  PSG8 WILD-TYPE  208    8
     clus
vv    PSG8 MUTATED PSG8 WILD-TYPE
  NO             0              8
  YES            8            208

Clustering(167) Variable = SPATA17 MUTATION ANALYSIS
D167V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE"   "SPATA17 MUTATED" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE"   "SPATA17 MUTATED" "SPATA17 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE"   "SPATA17 MUTATED" "SPATA17 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SPATA17 WILD-TYPE"   "SPATA17 MUTATED" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SPATA17 MUTATED" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE"   "SPATA17 MUTATED" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE"   "SPATA17 MUTATED" "SPATA17 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE"   "SPATA17 MUTATED" "SPATA17 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SPATA17 WILD-TYPE"   "SPATA17 MUTATED" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SPATA17 MUTATED" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE"   "SPATA17 MUTATED" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE"   "SPATA17 MUTATED" "SPATA17 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE"   "SPATA17 MUTATED" "SPATA17 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SPATA17 WILD-TYPE"   "SPATA17 MUTATED" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SPATA17 MUTATED" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
[1] "hr=" "1.9"
D167V2, continuous
D167V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SPATA17 MUTATED      7    2
  SPATA17 WILD-TYPE  147   66
        clus
vv       SPATA17 MUTATED SPATA17 WILD-TYPE
  COLON                7               147
  RECTUM               2                66
D167V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SPATA17 MUTATED      4    5
  SPATA17 WILD-TYPE  113  102
        clus
vv       SPATA17 MUTATED SPATA17 WILD-TYPE
  FEMALE               5               102
  MALE                 4               113
D167V5, multiclass
                                clus
vv                               SPATA17 MUTATED SPATA17 WILD-TYPE
  COLON ADENOCARCINOMA                         3               125
  COLON MUCINOUS ADENOCARCINOMA                4                20
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D167V6, multiclass
    clus
vv   SPATA17 MUTATED SPATA17 WILD-TYPE
  T1               0                 9
  T2               3                44
  T3               2               148
  T4               3                14
D167V7, multiclass
    clus
vv   SPATA17 MUTATED SPATA17 WILD-TYPE
  N0               8               126
  N1               1                43
  N2               0                46
D167V8, multiclass
     clus
vv    SPATA17 MUTATED SPATA17 WILD-TYPE
  M0                9               180
  M1                0                31
  M1A               0                 1
D167V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SPATA17 MUTATED      8    1
  SPATA17 WILD-TYPE  208    7
     clus
vv    SPATA17 MUTATED SPATA17 WILD-TYPE
  NO                1                 7
  YES               8               208

Clustering(168) Variable = ZIM3 MUTATION ANALYSIS
D168V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ZIM3 MUTATED" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ZIM3 WILD-TYPE"   "ZIM3 MUTATED"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "ZIM3 MUTATED" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
  "ZIM3 MUTATED" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ZIM3 MUTATED" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ZIM3 WILD-TYPE"   "ZIM3 MUTATED"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "ZIM3 MUTATED" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
  "ZIM3 MUTATED" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ZIM3 MUTATED" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ZIM3 WILD-TYPE"   "ZIM3 MUTATED"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "ZIM3 MUTATED" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
  "ZIM3 MUTATED" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
[1] "hr=" "1.8"
D168V2, continuous
D168V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZIM3 MUTATED      4    5
  ZIM3 WILD-TYPE  150   63
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  COLON             4            150
  RECTUM            5             63
D168V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZIM3 MUTATED      4    5
  ZIM3 WILD-TYPE  113  102
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  FEMALE            5            102
  MALE              4            113
D168V5, multiclass
                                clus
vv                               ZIM3 MUTATED ZIM3 WILD-TYPE
  COLON ADENOCARCINOMA                      4            124
  COLON MUCINOUS ADENOCARCINOMA             0             24
  RECTAL ADENOCARCINOMA                     4             53
  RECTAL MUCINOUS ADENOCARCINOMA            1              7
D168V6, multiclass
    clus
vv   ZIM3 MUTATED ZIM3 WILD-TYPE
  T1            1              8
  T2            2             45
  T3            4            146
  T4            2             15
D168V7, multiclass
    clus
vv   ZIM3 MUTATED ZIM3 WILD-TYPE
  N0            6            128
  N1            3             41
  N2            0             46
D168V8, multiclass
     clus
vv    ZIM3 MUTATED ZIM3 WILD-TYPE
  M0             8            181
  M1             0             31
  M1A            0              1
D168V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZIM3 MUTATED      9    0
  ZIM3 WILD-TYPE  207    8
     clus
vv    ZIM3 MUTATED ZIM3 WILD-TYPE
  NO             0              8
  YES            9            207

Clustering(169) Variable = ZNF167 MUTATION ANALYSIS
D169V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE"   "ZNF167 MUTATED" "ZNF167 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF167 WILD-TYPE"   "ZNF167 MUTATED" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF167 MUTATED" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF167 MUTATED" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE"   "ZNF167 MUTATED" "ZNF167 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF167 WILD-TYPE"   "ZNF167 MUTATED" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF167 MUTATED" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF167 MUTATED" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE"   "ZNF167 MUTATED" "ZNF167 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF167 WILD-TYPE"   "ZNF167 MUTATED" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF167 MUTATED" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF167 MUTATED" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
[1] "hr=" "2.5"
D169V2, continuous
D169V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF167 MUTATED      6    1
  ZNF167 WILD-TYPE  148   67
        clus
vv       ZNF167 MUTATED ZNF167 WILD-TYPE
  COLON               6              148
  RECTUM              1               67
D169V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF167 MUTATED      4    3
  ZNF167 WILD-TYPE  113  104
        clus
vv       ZNF167 MUTATED ZNF167 WILD-TYPE
  FEMALE              3              104
  MALE                4              113
D169V5, multiclass
                                clus
vv                               ZNF167 MUTATED ZNF167 WILD-TYPE
  COLON ADENOCARCINOMA                        5              123
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D169V6, multiclass
    clus
vv   ZNF167 MUTATED ZNF167 WILD-TYPE
  T1              0                9
  T2              1               46
  T3              4              146
  T4              2               15
D169V7, multiclass
    clus
vv   ZNF167 MUTATED ZNF167 WILD-TYPE
  N0              6              128
  N1              1               43
  N2              0               46
D169V8, multiclass
     clus
vv    ZNF167 MUTATED ZNF167 WILD-TYPE
  M0               6              183
  M1               1               30
  M1A              0                1
D169V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF167 MUTATED      7    0
  ZNF167 WILD-TYPE  209    8
     clus
vv    ZNF167 MUTATED ZNF167 WILD-TYPE
  NO               0                8
  YES              7              209

Clustering(170) Variable = CSMD1 MUTATION ANALYSIS
D170V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
[1] "hr=" "4.1"
D170V2, continuous
D170V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CSMD1 MUTATED     17    9
  CSMD1 WILD-TYPE  137   59
        clus
vv       CSMD1 MUTATED CSMD1 WILD-TYPE
  COLON             17             137
  RECTUM             9              59
D170V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CSMD1 MUTATED     15   11
  CSMD1 WILD-TYPE  102   96
        clus
vv       CSMD1 MUTATED CSMD1 WILD-TYPE
  FEMALE            11              96
  MALE              15             102
D170V5, multiclass
                                clus
vv                               CSMD1 MUTATED CSMD1 WILD-TYPE
  COLON ADENOCARCINOMA                      13             115
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      8              49
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D170V6, multiclass
    clus
vv   CSMD1 MUTATED CSMD1 WILD-TYPE
  T1             1               8
  T2             4              43
  T3            17             133
  T4             4              13
D170V7, multiclass
    clus
vv   CSMD1 MUTATED CSMD1 WILD-TYPE
  N0            19             115
  N1             4              40
  N2             3              43
D170V8, multiclass
     clus
vv    CSMD1 MUTATED CSMD1 WILD-TYPE
  M0             22             167
  M1              3              28
  M1A             0               1
D170V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CSMD1 MUTATED     26    0
  CSMD1 WILD-TYPE  190    8
     clus
vv    CSMD1 MUTATED CSMD1 WILD-TYPE
  NO              0               8
  YES            26             190

Clustering(171) Variable = ME1 MUTATION ANALYSIS
D171V1, survival
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE"   "ME1 MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"ME1 WILD-TYPE" "ME1 WILD-TYPE"   "ME1 MUTATED" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "ME1 MUTATED" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"ME1 WILD-TYPE" "ME1 WILD-TYPE"   "ME1 MUTATED" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "ME1 MUTATED" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE"   "ME1 MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"ME1 WILD-TYPE" "ME1 WILD-TYPE"   "ME1 MUTATED" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "ME1 MUTATED" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"ME1 WILD-TYPE" "ME1 WILD-TYPE"   "ME1 MUTATED" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "ME1 MUTATED" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE"   "ME1 MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"ME1 WILD-TYPE" "ME1 WILD-TYPE"   "ME1 MUTATED" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "ME1 MUTATED" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"ME1 WILD-TYPE" "ME1 WILD-TYPE"   "ME1 MUTATED" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "ME1 MUTATED" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
[1] "hr="     "2.5e+07"
D171V2, continuous
D171V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  ME1 MUTATED      7    2
  ME1 WILD-TYPE  147   66
        clus
vv       ME1 MUTATED ME1 WILD-TYPE
  COLON            7           147
  RECTUM           2            66
D171V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  ME1 MUTATED      5    4
  ME1 WILD-TYPE  112  103
        clus
vv       ME1 MUTATED ME1 WILD-TYPE
  FEMALE           4           103
  MALE             5           112
D171V5, multiclass
                                clus
vv                               ME1 MUTATED ME1 WILD-TYPE
  COLON ADENOCARCINOMA                     5           123
  COLON MUCINOUS ADENOCARCINOMA            2            22
  RECTAL ADENOCARCINOMA                    2            55
  RECTAL MUCINOUS ADENOCARCINOMA           0             8
D171V6, multiclass
    clus
vv   ME1 MUTATED ME1 WILD-TYPE
  T1           0             9
  T2           3            44
  T3           4           146
  T4           2            15
D171V7, multiclass
    clus
vv   ME1 MUTATED ME1 WILD-TYPE
  N0           5           129
  N1           2            42
  N2           2            44
D171V8, multiclass
     clus
vv    ME1 MUTATED ME1 WILD-TYPE
  M0            8           181
  M1            1            30
  M1A           0             1
D171V9, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  ME1 MUTATED      9    0
  ME1 WILD-TYPE  207    8
     clus
vv    ME1 MUTATED ME1 WILD-TYPE
  NO            0             8
  YES           9           207

Clustering(172) Variable = HCLS1 MUTATION ANALYSIS
D172V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE"   "HCLS1 MUTATED" "HCLS1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE"   "HCLS1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE"   "HCLS1 MUTATED"   "HCLS1 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "HCLS1 MUTATED" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "HCLS1 MUTATED" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE"   "HCLS1 MUTATED" "HCLS1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE"   "HCLS1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE"   "HCLS1 MUTATED"   "HCLS1 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "HCLS1 MUTATED" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "HCLS1 MUTATED" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE"   "HCLS1 MUTATED" "HCLS1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE"   "HCLS1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE"   "HCLS1 MUTATED"   "HCLS1 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "HCLS1 MUTATED" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "HCLS1 MUTATED" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D172V2, continuous
D172V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HCLS1 MUTATED      7    1
  HCLS1 WILD-TYPE  147   67
        clus
vv       HCLS1 MUTATED HCLS1 WILD-TYPE
  COLON              7             147
  RECTUM             1              67
D172V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HCLS1 MUTATED      4    4
  HCLS1 WILD-TYPE  113  103
        clus
vv       HCLS1 MUTATED HCLS1 WILD-TYPE
  FEMALE             4             103
  MALE               4             113
D172V5, multiclass
                                clus
vv                               HCLS1 MUTATED HCLS1 WILD-TYPE
  COLON ADENOCARCINOMA                       5             123
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D172V6, multiclass
    clus
vv   HCLS1 MUTATED HCLS1 WILD-TYPE
  T1             0               9
  T2             2              45
  T3             4             146
  T4             2              15
D172V7, multiclass
    clus
vv   HCLS1 MUTATED HCLS1 WILD-TYPE
  N0             5             129
  N1             1              43
  N2             2              44
D172V8, multiclass
     clus
vv    HCLS1 MUTATED HCLS1 WILD-TYPE
  M0              7             182
  M1              0              31
  M1A             0               1
D172V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HCLS1 MUTATED      8    0
  HCLS1 WILD-TYPE  208    8
     clus
vv    HCLS1 MUTATED HCLS1 WILD-TYPE
  NO              0               8
  YES             8             208

Clustering(173) Variable = B2M MUTATION ANALYSIS
D173V1, survival
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"B2M WILD-TYPE" "B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"B2M WILD-TYPE" "B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"B2M WILD-TYPE" "B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
[1] "hr="     "2.7e+07"
D173V2, continuous
D173V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  B2M MUTATED      3    2
  B2M WILD-TYPE  151   66
        clus
vv       B2M MUTATED B2M WILD-TYPE
  COLON            3           151
  RECTUM           2            66
D173V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  B2M MUTATED      1    4
  B2M WILD-TYPE  116  103
        clus
vv       B2M MUTATED B2M WILD-TYPE
  FEMALE           4           103
  MALE             1           116
D173V5, multiclass
                                clus
vv                               B2M MUTATED B2M WILD-TYPE
  COLON ADENOCARCINOMA                     2           126
  COLON MUCINOUS ADENOCARCINOMA            0            24
  RECTAL ADENOCARCINOMA                    2            55
  RECTAL MUCINOUS ADENOCARCINOMA           0             8
D173V6, multiclass
    clus
vv   B2M MUTATED B2M WILD-TYPE
  T1           1             8
  T2           0            47
  T3           3           147
  T4           1            16
D173V7, multiclass
    clus
vv   B2M MUTATED B2M WILD-TYPE
  N0           4           130
  N1           1            43
  N2           0            46
D173V8, multiclass
     clus
vv    B2M MUTATED B2M WILD-TYPE
  M0            5           184
  M1            0            31
  M1A           0             1
D173V9, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  B2M MUTATED      5    0
  B2M WILD-TYPE  211    8
     clus
vv    B2M MUTATED B2M WILD-TYPE
  NO            0             8
  YES           5           211

Clustering(174) Variable = JAKMIP2 MUTATION ANALYSIS
D174V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
  "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
  "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
  "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
[1] "hr="     "7.6e+07"
D174V2, continuous
D174V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  JAKMIP2 MUTATED     10    3
  JAKMIP2 WILD-TYPE  144   65
        clus
vv       JAKMIP2 MUTATED JAKMIP2 WILD-TYPE
  COLON               10               144
  RECTUM               3                65
D174V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  JAKMIP2 MUTATED      5    8
  JAKMIP2 WILD-TYPE  112   99
        clus
vv       JAKMIP2 MUTATED JAKMIP2 WILD-TYPE
  FEMALE               8                99
  MALE                 5               112
D174V5, multiclass
                                clus
vv                               JAKMIP2 MUTATED JAKMIP2 WILD-TYPE
  COLON ADENOCARCINOMA                         7               121
  COLON MUCINOUS ADENOCARCINOMA                3                21
  RECTAL ADENOCARCINOMA                        3                54
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D174V6, multiclass
    clus
vv   JAKMIP2 MUTATED JAKMIP2 WILD-TYPE
  T1               0                 9
  T2               5                42
  T3               6               144
  T4               2                15
D174V7, multiclass
    clus
vv   JAKMIP2 MUTATED JAKMIP2 WILD-TYPE
  N0              11               123
  N1               1                43
  N2               1                45
D174V8, multiclass
     clus
vv    JAKMIP2 MUTATED JAKMIP2 WILD-TYPE
  M0               13               176
  M1                0                31
  M1A               0                 1
D174V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  JAKMIP2 MUTATED     13    0
  JAKMIP2 WILD-TYPE  203    8
     clus
vv    JAKMIP2 MUTATED JAKMIP2 WILD-TYPE
  NO                0                 8
  YES              13               203

Clustering(175) Variable = PCDHB5 MUTATION ANALYSIS
D175V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
  "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
  "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
  "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
[1] "hr=" "3.5"
D175V2, continuous
D175V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDHB5 MUTATED     12    2
  PCDHB5 WILD-TYPE  142   66
        clus
vv       PCDHB5 MUTATED PCDHB5 WILD-TYPE
  COLON              12              142
  RECTUM              2               66
D175V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDHB5 MUTATED      5    9
  PCDHB5 WILD-TYPE  112   98
        clus
vv       PCDHB5 MUTATED PCDHB5 WILD-TYPE
  FEMALE              9               98
  MALE                5              112
D175V5, multiclass
                                clus
vv                               PCDHB5 MUTATED PCDHB5 WILD-TYPE
  COLON ADENOCARCINOMA                       10              118
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D175V6, multiclass
    clus
vv   PCDHB5 MUTATED PCDHB5 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              9              141
  T4              3               14
D175V7, multiclass
    clus
vv   PCDHB5 MUTATED PCDHB5 WILD-TYPE
  N0             10              124
  N1              3               41
  N2              1               45
D175V8, multiclass
     clus
vv    PCDHB5 MUTATED PCDHB5 WILD-TYPE
  M0              12              177
  M1               2               29
  M1A              0                1
D175V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDHB5 MUTATED     14    0
  PCDHB5 WILD-TYPE  202    8
     clus
vv    PCDHB5 MUTATED PCDHB5 WILD-TYPE
  NO               0                8
  YES             14              202

Clustering(176) Variable = RPS6KA6 MUTATION ANALYSIS
D176V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"RPS6KA6 WILD-TYPE"   "RPS6KA6 MUTATED" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"RPS6KA6 WILD-TYPE"   "RPS6KA6 MUTATED" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "RPS6KA6 MUTATED" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"RPS6KA6 WILD-TYPE"   "RPS6KA6 MUTATED" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"RPS6KA6 WILD-TYPE"   "RPS6KA6 MUTATED" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"RPS6KA6 WILD-TYPE"   "RPS6KA6 MUTATED" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "RPS6KA6 MUTATED" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"RPS6KA6 WILD-TYPE"   "RPS6KA6 MUTATED" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"RPS6KA6 WILD-TYPE"   "RPS6KA6 MUTATED" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"RPS6KA6 WILD-TYPE"   "RPS6KA6 MUTATED" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "RPS6KA6 MUTATED" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"RPS6KA6 WILD-TYPE"   "RPS6KA6 MUTATED" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" "RPS6KA6 WILD-TYPE" 
[1] "hr="     "9300000"
D176V2, continuous
D176V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  RPS6KA6 MUTATED      5    2
  RPS6KA6 WILD-TYPE  149   66
        clus
vv       RPS6KA6 MUTATED RPS6KA6 WILD-TYPE
  COLON                5               149
  RECTUM               2                66
D176V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  RPS6KA6 MUTATED      1    6
  RPS6KA6 WILD-TYPE  116  101
        clus
vv       RPS6KA6 MUTATED RPS6KA6 WILD-TYPE
  FEMALE               6               101
  MALE                 1               116
D176V5, multiclass
                                clus
vv                               RPS6KA6 MUTATED RPS6KA6 WILD-TYPE
  COLON ADENOCARCINOMA                         4               124
  COLON MUCINOUS ADENOCARCINOMA                1                23
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D176V6, multiclass
    clus
vv   RPS6KA6 MUTATED RPS6KA6 WILD-TYPE
  T1               1                 8
  T2               0                47
  T3               4               146
  T4               2                15
D176V7, multiclass
    clus
vv   RPS6KA6 MUTATED RPS6KA6 WILD-TYPE
  N0               6               128
  N1               0                44
  N2               1                45
D176V8, multiclass
     clus
vv    RPS6KA6 MUTATED RPS6KA6 WILD-TYPE
  M0                7               182
  M1                0                31
  M1A               0                 1
D176V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  RPS6KA6 MUTATED      7    0
  RPS6KA6 WILD-TYPE  209    8
     clus
vv    RPS6KA6 MUTATED RPS6KA6 WILD-TYPE
  NO                0                 8
  YES               7               209

Clustering(177) Variable = GPHN MUTATION ANALYSIS
D177V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE"   "GPHN MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GPHN WILD-TYPE" "GPHN WILD-TYPE"   "GPHN MUTATED" "GPHN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE"   "GPHN MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GPHN WILD-TYPE"   "GPHN MUTATED" "GPHN WILD-TYPE"   "GPHN MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GPHN WILD-TYPE"   "GPHN MUTATED" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "GPHN MUTATED"   "GPHN MUTATED" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"GPHN WILD-TYPE" "GPHN WILD-TYPE"   "GPHN MUTATED" "GPHN WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE"   "GPHN MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GPHN WILD-TYPE" "GPHN WILD-TYPE"   "GPHN MUTATED" "GPHN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE"   "GPHN MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GPHN WILD-TYPE"   "GPHN MUTATED" "GPHN WILD-TYPE"   "GPHN MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GPHN WILD-TYPE"   "GPHN MUTATED" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "GPHN MUTATED"   "GPHN MUTATED" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"GPHN WILD-TYPE" "GPHN WILD-TYPE"   "GPHN MUTATED" "GPHN WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE"   "GPHN MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GPHN WILD-TYPE" "GPHN WILD-TYPE"   "GPHN MUTATED" "GPHN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE"   "GPHN MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GPHN WILD-TYPE"   "GPHN MUTATED" "GPHN WILD-TYPE"   "GPHN MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GPHN WILD-TYPE"   "GPHN MUTATED" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "GPHN MUTATED"   "GPHN MUTATED" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"GPHN WILD-TYPE" "GPHN WILD-TYPE"   "GPHN MUTATED" "GPHN WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
[1] "hr=" "1.8"
D177V2, continuous
D177V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GPHN MUTATED     10    1
  GPHN WILD-TYPE  144   67
        clus
vv       GPHN MUTATED GPHN WILD-TYPE
  COLON            10            144
  RECTUM            1             67
D177V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GPHN MUTATED      5    7
  GPHN WILD-TYPE  112  100
        clus
vv       GPHN MUTATED GPHN WILD-TYPE
  FEMALE            7            100
  MALE              5            112
D177V5, multiclass
                                clus
vv                               GPHN MUTATED GPHN WILD-TYPE
  COLON ADENOCARCINOMA                      6            122
  COLON MUCINOUS ADENOCARCINOMA             4             20
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D177V6, multiclass
    clus
vv   GPHN MUTATED GPHN WILD-TYPE
  T1            2              7
  T2            2             45
  T3            7            143
  T4            0             17
D177V7, multiclass
    clus
vv   GPHN MUTATED GPHN WILD-TYPE
  N0           11            123
  N1            0             44
  N2            1             45
D177V8, multiclass
     clus
vv    GPHN MUTATED GPHN WILD-TYPE
  M0            10            179
  M1             0             31
  M1A            0              1
D177V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GPHN MUTATED     11    1
  GPHN WILD-TYPE  205    7
     clus
vv    GPHN MUTATED GPHN WILD-TYPE
  NO             1              7
  YES           11            205

Clustering(178) Variable = C8B MUTATION ANALYSIS
D178V1, survival
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED"   "C8B MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED"   "C8B MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED"   "C8B MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
[1] "hr=" "2.3"
D178V2, continuous
D178V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  C8B MUTATED      9    1
  C8B WILD-TYPE  145   67
        clus
vv       C8B MUTATED C8B WILD-TYPE
  COLON            9           145
  RECTUM           1            67
D178V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  C8B MUTATED      3    7
  C8B WILD-TYPE  114  100
        clus
vv       C8B MUTATED C8B WILD-TYPE
  FEMALE           7           100
  MALE             3           114
D178V5, multiclass
                                clus
vv                               C8B MUTATED C8B WILD-TYPE
  COLON ADENOCARCINOMA                     6           122
  COLON MUCINOUS ADENOCARCINOMA            3            21
  RECTAL ADENOCARCINOMA                    1            56
  RECTAL MUCINOUS ADENOCARCINOMA           0             8
D178V6, multiclass
    clus
vv   C8B MUTATED C8B WILD-TYPE
  T1           0             9
  T2           2            45
  T3           6           144
  T4           2            15
D178V7, multiclass
    clus
vv   C8B MUTATED C8B WILD-TYPE
  N0           6           128
  N1           2            42
  N2           2            44
D178V8, multiclass
     clus
vv    C8B MUTATED C8B WILD-TYPE
  M0            8           181
  M1            2            29
  M1A           0             1
D178V9, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  C8B MUTATED      8    2
  C8B WILD-TYPE  208    6
     clus
vv    C8B MUTATED C8B WILD-TYPE
  NO            2             6
  YES           8           208

Clustering(179) Variable = OTOL1 MUTATION ANALYSIS
D179V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OTOL1 MUTATED" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE"   "OTOL1 MUTATED" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
  "OTOL1 MUTATED" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OTOL1 MUTATED" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OTOL1 MUTATED" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE"   "OTOL1 MUTATED" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
  "OTOL1 MUTATED" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OTOL1 MUTATED" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OTOL1 MUTATED" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE"   "OTOL1 MUTATED" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
  "OTOL1 MUTATED" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OTOL1 MUTATED" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D179V2, continuous
D179V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OTOL1 MUTATED      7    1
  OTOL1 WILD-TYPE  147   67
        clus
vv       OTOL1 MUTATED OTOL1 WILD-TYPE
  COLON              7             147
  RECTUM             1              67
D179V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OTOL1 MUTATED      4    4
  OTOL1 WILD-TYPE  113  103
        clus
vv       OTOL1 MUTATED OTOL1 WILD-TYPE
  FEMALE             4             103
  MALE               4             113
D179V5, multiclass
                                clus
vv                               OTOL1 MUTATED OTOL1 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D179V6, multiclass
    clus
vv   OTOL1 MUTATED OTOL1 WILD-TYPE
  T1             0               9
  T2             4              43
  T3             2             148
  T4             2              15
D179V7, multiclass
    clus
vv   OTOL1 MUTATED OTOL1 WILD-TYPE
  N0             4             130
  N1             3              41
  N2             1              45
D179V8, multiclass
     clus
vv    OTOL1 MUTATED OTOL1 WILD-TYPE
  M0              8             181
  M1              0              31
  M1A             0               1
D179V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OTOL1 MUTATED      8    0
  OTOL1 WILD-TYPE  208    8
     clus
vv    OTOL1 MUTATED OTOL1 WILD-TYPE
  NO              0               8
  YES             8             208

Clustering(180) Variable = AMY2A MUTATION ANALYSIS
D180V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "AMY2A MUTATED" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"AMY2A WILD-TYPE"   "AMY2A MUTATED" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "AMY2A MUTATED" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "AMY2A MUTATED" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"AMY2A WILD-TYPE"   "AMY2A MUTATED" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "AMY2A MUTATED" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "AMY2A MUTATED" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"AMY2A WILD-TYPE"   "AMY2A MUTATED" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "AMY2A MUTATED" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
[1] "hr="     "2.7e+07"
D180V2, continuous
D180V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  AMY2A MUTATED      3    2
  AMY2A WILD-TYPE  151   66
        clus
vv       AMY2A MUTATED AMY2A WILD-TYPE
  COLON              3             151
  RECTUM             2              66
D180V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  AMY2A MUTATED      2    3
  AMY2A WILD-TYPE  115  104
        clus
vv       AMY2A MUTATED AMY2A WILD-TYPE
  FEMALE             3             104
  MALE               2             115
D180V5, multiclass
                                clus
vv                               AMY2A MUTATED AMY2A WILD-TYPE
  COLON ADENOCARCINOMA                       3             125
  COLON MUCINOUS ADENOCARCINOMA              0              24
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D180V6, multiclass
    clus
vv   AMY2A MUTATED AMY2A WILD-TYPE
  T1             0               9
  T2             2              45
  T3             2             148
  T4             1              16
D180V7, multiclass
    clus
vv   AMY2A MUTATED AMY2A WILD-TYPE
  N0             5             129
  N1             0              44
  N2             0              46
D180V8, multiclass
     clus
vv    AMY2A MUTATED AMY2A WILD-TYPE
  M0              5             184
  M1              0              31
  M1A             0               1
D180V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  AMY2A MUTATED      5    0
  AMY2A WILD-TYPE  211    8
     clus
vv    AMY2A MUTATED AMY2A WILD-TYPE
  NO              0               8
  YES             5             211

Clustering(181) Variable = MAP3K4 MUTATION ANALYSIS
D181V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" "MAP3K4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" "MAP3K4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED"   "MAP3K4 MUTATED" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "MAP3K4 MUTATED" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" "MAP3K4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" "MAP3K4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED"   "MAP3K4 MUTATED" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "MAP3K4 MUTATED" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" "MAP3K4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" "MAP3K4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED"   "MAP3K4 MUTATED" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "MAP3K4 MUTATED" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
[1] "hr=" "1.4"
D181V2, continuous
D181V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAP3K4 MUTATED     14    3
  MAP3K4 WILD-TYPE  140   65
        clus
vv       MAP3K4 MUTATED MAP3K4 WILD-TYPE
  COLON              14              140
  RECTUM              3               65
D181V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAP3K4 MUTATED      7   10
  MAP3K4 WILD-TYPE  110   97
        clus
vv       MAP3K4 MUTATED MAP3K4 WILD-TYPE
  FEMALE             10               97
  MALE                7              110
D181V5, multiclass
                                clus
vv                               MAP3K4 MUTATED MAP3K4 WILD-TYPE
  COLON ADENOCARCINOMA                        8              120
  COLON MUCINOUS ADENOCARCINOMA               6               18
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D181V6, multiclass
    clus
vv   MAP3K4 MUTATED MAP3K4 WILD-TYPE
  T1              1                8
  T2              2               45
  T3             10              140
  T4              3               14
D181V7, multiclass
    clus
vv   MAP3K4 MUTATED MAP3K4 WILD-TYPE
  N0             12              122
  N1              2               42
  N2              3               43
D181V8, multiclass
     clus
vv    MAP3K4 MUTATED MAP3K4 WILD-TYPE
  M0              16              173
  M1               0               31
  M1A              0                1
D181V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAP3K4 MUTATED     16    1
  MAP3K4 WILD-TYPE  200    7
     clus
vv    MAP3K4 MUTATED MAP3K4 WILD-TYPE
  NO               1                7
  YES             16              200

Clustering(182) Variable = CDH11 MUTATION ANALYSIS
D182V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED"   "CDH11 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED"   "CDH11 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED"   "CDH11 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
[1] "hr=" "1.8"
D182V2, continuous
D182V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH11 MUTATED     13    1
  CDH11 WILD-TYPE  141   67
        clus
vv       CDH11 MUTATED CDH11 WILD-TYPE
  COLON             13             141
  RECTUM             1              67
D182V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH11 MUTATED      9    5
  CDH11 WILD-TYPE  108  102
        clus
vv       CDH11 MUTATED CDH11 WILD-TYPE
  FEMALE             5             102
  MALE               9             108
D182V5, multiclass
                                clus
vv                               CDH11 MUTATED CDH11 WILD-TYPE
  COLON ADENOCARCINOMA                      11             117
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D182V6, multiclass
    clus
vv   CDH11 MUTATED CDH11 WILD-TYPE
  T1             0               9
  T2             4              43
  T3             9             141
  T4             1              16
D182V7, multiclass
    clus
vv   CDH11 MUTATED CDH11 WILD-TYPE
  N0             7             127
  N1             4              40
  N2             3              43
D182V8, multiclass
     clus
vv    CDH11 MUTATED CDH11 WILD-TYPE
  M0             11             178
  M1              2              29
  M1A             0               1
D182V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH11 MUTATED     14    0
  CDH11 WILD-TYPE  202    8
     clus
vv    CDH11 MUTATED CDH11 WILD-TYPE
  NO              0               8
  YES            14             202

Clustering(183) Variable = FGA MUTATION ANALYSIS
D183V1, survival
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE"   "FGA MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE"   "FGA MUTATED" "FGA WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE"   "FGA MUTATED" "FGA WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "FGA MUTATED" "FGA WILD-TYPE" "FGA WILD-TYPE"   "FGA MUTATED" "FGA WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"FGA WILD-TYPE" "FGA WILD-TYPE"   "FGA MUTATED" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "FGA MUTATED" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "FGA MUTATED" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE"   "FGA MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE"   "FGA MUTATED" "FGA WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE"   "FGA MUTATED" "FGA WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "FGA MUTATED" "FGA WILD-TYPE" "FGA WILD-TYPE"   "FGA MUTATED" "FGA WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"FGA WILD-TYPE" "FGA WILD-TYPE"   "FGA MUTATED" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "FGA MUTATED" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "FGA MUTATED" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE"   "FGA MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE"   "FGA MUTATED" "FGA WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE"   "FGA MUTATED" "FGA WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "FGA MUTATED" "FGA WILD-TYPE" "FGA WILD-TYPE"   "FGA MUTATED" "FGA WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"FGA WILD-TYPE" "FGA WILD-TYPE"   "FGA MUTATED" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "FGA MUTATED" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "FGA MUTATED" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
[1] "hr=" "3.4"
D183V2, continuous
D183V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  FGA MUTATED     10    2
  FGA WILD-TYPE  144   66
        clus
vv       FGA MUTATED FGA WILD-TYPE
  COLON           10           144
  RECTUM           2            66
D183V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  FGA MUTATED      6    6
  FGA WILD-TYPE  111  101
        clus
vv       FGA MUTATED FGA WILD-TYPE
  FEMALE           6           101
  MALE             6           111
D183V5, multiclass
                                clus
vv                               FGA MUTATED FGA WILD-TYPE
  COLON ADENOCARCINOMA                     8           120
  COLON MUCINOUS ADENOCARCINOMA            2            22
  RECTAL ADENOCARCINOMA                    2            55
  RECTAL MUCINOUS ADENOCARCINOMA           0             8
D183V6, multiclass
    clus
vv   FGA MUTATED FGA WILD-TYPE
  T1           0             9
  T2           3            44
  T3           7           143
  T4           2            15
D183V7, multiclass
    clus
vv   FGA MUTATED FGA WILD-TYPE
  N0           9           125
  N1           3            41
  N2           0            46
D183V8, multiclass
     clus
vv    FGA MUTATED FGA WILD-TYPE
  M0           12           177
  M1            0            31
  M1A           0             1
D183V9, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  FGA MUTATED     12    0
  FGA WILD-TYPE  204    8
     clus
vv    FGA MUTATED FGA WILD-TYPE
  NO            0             8
  YES          12           204

Clustering(184) Variable = RIMS1 MUTATION ANALYSIS
D184V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" "RIMS1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RIMS1 WILD-TYPE"   "RIMS1 MUTATED" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RIMS1 WILD-TYPE"   "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" "RIMS1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RIMS1 WILD-TYPE"   "RIMS1 MUTATED" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RIMS1 WILD-TYPE"   "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" "RIMS1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RIMS1 WILD-TYPE"   "RIMS1 MUTATED" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RIMS1 WILD-TYPE"   "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
[1] "hr=" "1.3"
D184V2, continuous
D184V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIMS1 MUTATED     12    3
  RIMS1 WILD-TYPE  142   65
        clus
vv       RIMS1 MUTATED RIMS1 WILD-TYPE
  COLON             12             142
  RECTUM             3              65
D184V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIMS1 MUTATED      9    6
  RIMS1 WILD-TYPE  108  101
        clus
vv       RIMS1 MUTATED RIMS1 WILD-TYPE
  FEMALE             6             101
  MALE               9             108
D184V5, multiclass
                                clus
vv                               RIMS1 MUTATED RIMS1 WILD-TYPE
  COLON ADENOCARCINOMA                       9             119
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D184V6, multiclass
    clus
vv   RIMS1 MUTATED RIMS1 WILD-TYPE
  T1             0               9
  T2             4              43
  T3             9             141
  T4             2              15
D184V7, multiclass
    clus
vv   RIMS1 MUTATED RIMS1 WILD-TYPE
  N0            13             121
  N1             1              43
  N2             1              45
D184V8, multiclass
     clus
vv    RIMS1 MUTATED RIMS1 WILD-TYPE
  M0             14             175
  M1              0              31
  M1A             0               1
D184V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIMS1 MUTATED     15    0
  RIMS1 WILD-TYPE  201    8
     clus
vv    RIMS1 MUTATED RIMS1 WILD-TYPE
  NO              0               8
  YES            15             201

Clustering(185) Variable = OR7C1 MUTATION ANALYSIS
D185V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE"   "OR7C1 MUTATED" "OR7C1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE"   "OR7C1 MUTATED" "OR7C1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE"   "OR7C1 MUTATED" "OR7C1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE"   "OR7C1 MUTATED" "OR7C1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE"   "OR7C1 MUTATED" "OR7C1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE"   "OR7C1 MUTATED" "OR7C1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
[1] "Remove cluster labels:" "OR7C1 MUTATED"         
clus
  OR7C1 MUTATED OR7C1 WILD-TYPE 
              2             118 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3526      TCGA-AA-3555 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679      TCGA-AA-3685 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3818 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3846 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877      TCGA-AA-3939 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3952 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977      TCGA-AA-3986 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024      TCGA-AA-A029 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02O 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581      TCGA-AG-3582 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599      TCGA-AG-3726 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887      TCGA-AG-3892 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999      TCGA-AG-4001 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002      TCGA-AG-A008 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A025 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N      TCGA-AG-A02X 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A032      TCGA-AG-A036 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
D185V2, continuous
D185V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR7C1 MUTATED      5    0
  OR7C1 WILD-TYPE  149   68
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  COLON              5             149
  RECTUM             0              68
D185V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR7C1 MUTATED      2    4
  OR7C1 WILD-TYPE  115  103
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  FEMALE             4             103
  MALE               2             115
D185V5, multiclass
                                clus
vv                               OR7C1 MUTATED OR7C1 WILD-TYPE
  COLON ADENOCARCINOMA                       3             125
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      0              57
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D185V6, multiclass
    clus
vv   OR7C1 MUTATED OR7C1 WILD-TYPE
  T1             1               8
  T2             1              46
  T3             4             146
  T4             0              17
D185V7, multiclass
    clus
vv   OR7C1 MUTATED OR7C1 WILD-TYPE
  N0             4             130
  N1             1              43
  N2             1              45
D185V8, multiclass
     clus
vv    OR7C1 MUTATED OR7C1 WILD-TYPE
  M0              5             184
  M1              0              31
  M1A             0               1
D185V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR7C1 MUTATED      6    0
  OR7C1 WILD-TYPE  210    8
     clus
vv    OR7C1 MUTATED OR7C1 WILD-TYPE
  NO              0               8
  YES             6             210

Clustering(186) Variable = PCDH11X MUTATION ANALYSIS
D186V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
[1] "hr=" "8.4"
D186V2, continuous
D186V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PCDH11X MUTATED     11    3
  PCDH11X WILD-TYPE  143   65
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  COLON               11               143
  RECTUM               3                65
D186V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PCDH11X MUTATED      8    6
  PCDH11X WILD-TYPE  109  101
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  FEMALE               6               101
  MALE                 8               109
D186V5, multiclass
                                clus
vv                               PCDH11X MUTATED PCDH11X WILD-TYPE
  COLON ADENOCARCINOMA                         8               120
  COLON MUCINOUS ADENOCARCINOMA                3                21
  RECTAL ADENOCARCINOMA                        3                54
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D186V6, multiclass
    clus
vv   PCDH11X MUTATED PCDH11X WILD-TYPE
  T1               2                 7
  T2               2                45
  T3               7               143
  T4               3                14
D186V7, multiclass
    clus
vv   PCDH11X MUTATED PCDH11X WILD-TYPE
  N0              12               122
  N1               0                44
  N2               2                44
D186V8, multiclass
     clus
vv    PCDH11X MUTATED PCDH11X WILD-TYPE
  M0               13               176
  M1                0                31
  M1A               0                 1
D186V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PCDH11X MUTATED     14    0
  PCDH11X WILD-TYPE  202    8
     clus
vv    PCDH11X MUTATED PCDH11X WILD-TYPE
  NO                0                 8
  YES              14               202

Clustering(187) Variable = MAP2 MUTATION ANALYSIS
D187V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE"   "MAP2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE"   "MAP2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE"   "MAP2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
[1] "hr=" "2.6"
D187V2, continuous
D187V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MAP2 MUTATED     14    2
  MAP2 WILD-TYPE  140   66
        clus
vv       MAP2 MUTATED MAP2 WILD-TYPE
  COLON            14            140
  RECTUM            2             66
D187V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MAP2 MUTATED      5   11
  MAP2 WILD-TYPE  112   96
        clus
vv       MAP2 MUTATED MAP2 WILD-TYPE
  FEMALE           11             96
  MALE              5            112
D187V5, multiclass
                                clus
vv                               MAP2 MUTATED MAP2 WILD-TYPE
  COLON ADENOCARCINOMA                      9            119
  COLON MUCINOUS ADENOCARCINOMA             5             19
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D187V6, multiclass
    clus
vv   MAP2 MUTATED MAP2 WILD-TYPE
  T1            1              8
  T2            1             46
  T3           11            139
  T4            3             14
D187V7, multiclass
    clus
vv   MAP2 MUTATED MAP2 WILD-TYPE
  N0           11            123
  N1            5             39
  N2            0             46
D187V8, multiclass
     clus
vv    MAP2 MUTATED MAP2 WILD-TYPE
  M0            16            173
  M1             0             31
  M1A            0              1
D187V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MAP2 MUTATED     16    0
  MAP2 WILD-TYPE  200    8
     clus
vv    MAP2 MUTATED MAP2 WILD-TYPE
  NO             0              8
  YES           16            200

Clustering(188) Variable = COL6A3 MUTATION ANALYSIS
D188V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
  "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE"   "COL6A3 MUTATED" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE"   "COL6A3 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE"   "COL6A3 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
  "COL6A3 MUTATED"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "COL6A3 MUTATED" "COL6A3 WILD-TYPE"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "COL6A3 MUTATED"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"COL6A3 WILD-TYPE"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"COL6A3 WILD-TYPE"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
  "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE"   "COL6A3 MUTATED" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE"   "COL6A3 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE"   "COL6A3 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
  "COL6A3 MUTATED"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "COL6A3 MUTATED" "COL6A3 WILD-TYPE"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "COL6A3 MUTATED"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"COL6A3 WILD-TYPE"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"COL6A3 WILD-TYPE"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
  "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE"   "COL6A3 MUTATED" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE"   "COL6A3 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE"   "COL6A3 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
  "COL6A3 MUTATED"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "COL6A3 MUTATED" "COL6A3 WILD-TYPE"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "COL6A3 MUTATED"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"COL6A3 WILD-TYPE"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"COL6A3 WILD-TYPE"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
[1] "hr=" "1.6"
D188V2, continuous
D188V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  COL6A3 MUTATED     22    5
  COL6A3 WILD-TYPE  132   63
        clus
vv       COL6A3 MUTATED COL6A3 WILD-TYPE
  COLON              22              132
  RECTUM              5               63
D188V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  COL6A3 MUTATED     12   15
  COL6A3 WILD-TYPE  105   92
        clus
vv       COL6A3 MUTATED COL6A3 WILD-TYPE
  FEMALE             15               92
  MALE               12              105
D188V5, multiclass
                                clus
vv                               COL6A3 MUTATED COL6A3 WILD-TYPE
  COLON ADENOCARCINOMA                       15              113
  COLON MUCINOUS ADENOCARCINOMA               6               18
  RECTAL ADENOCARCINOMA                       5               52
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D188V6, multiclass
    clus
vv   COL6A3 MUTATED COL6A3 WILD-TYPE
  T1              1                8
  T2              3               44
  T3             19              131
  T4              4               13
D188V7, multiclass
    clus
vv   COL6A3 MUTATED COL6A3 WILD-TYPE
  N0             16              118
  N1              6               38
  N2              5               41
D188V8, multiclass
     clus
vv    COL6A3 MUTATED COL6A3 WILD-TYPE
  M0              24              165
  M1               2               29
  M1A              0                1
D188V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  COL6A3 MUTATED     25    2
  COL6A3 WILD-TYPE  191    6
     clus
vv    COL6A3 MUTATED COL6A3 WILD-TYPE
  NO               2                6
  YES             25              191

Clustering(189) Variable = TRPA1 MUTATION ANALYSIS
D189V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE"   "TRPA1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPA1 MUTATED" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "TRPA1 MUTATED"   "TRPA1 MUTATED" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "TRPA1 MUTATED" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "TRPA1 MUTATED" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
  "TRPA1 MUTATED" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TRPA1 MUTATED" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE"   "TRPA1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPA1 MUTATED" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "TRPA1 MUTATED"   "TRPA1 MUTATED" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "TRPA1 MUTATED" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "TRPA1 MUTATED" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
  "TRPA1 MUTATED" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TRPA1 MUTATED" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE"   "TRPA1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPA1 MUTATED" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "TRPA1 MUTATED"   "TRPA1 MUTATED" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "TRPA1 MUTATED" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "TRPA1 MUTATED" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
  "TRPA1 MUTATED" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TRPA1 MUTATED" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D189V2, continuous
D189V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPA1 MUTATED      8    4
  TRPA1 WILD-TYPE  146   64
        clus
vv       TRPA1 MUTATED TRPA1 WILD-TYPE
  COLON              8             146
  RECTUM             4              64
D189V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPA1 MUTATED      8    4
  TRPA1 WILD-TYPE  109  103
        clus
vv       TRPA1 MUTATED TRPA1 WILD-TYPE
  FEMALE             4             103
  MALE               8             109
D189V5, multiclass
                                clus
vv                               TRPA1 MUTATED TRPA1 WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D189V6, multiclass
    clus
vv   TRPA1 MUTATED TRPA1 WILD-TYPE
  T1             0               9
  T2             4              43
  T3             7             143
  T4             1              16
D189V7, multiclass
    clus
vv   TRPA1 MUTATED TRPA1 WILD-TYPE
  N0             7             127
  N1             1              43
  N2             4              42
D189V8, multiclass
     clus
vv    TRPA1 MUTATED TRPA1 WILD-TYPE
  M0             11             178
  M1              0              31
  M1A             0               1
D189V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPA1 MUTATED     12    0
  TRPA1 WILD-TYPE  204    8
     clus
vv    TRPA1 MUTATED TRPA1 WILD-TYPE
  NO              0               8
  YES            12             204

Clustering(190) Variable = PCDH15 MUTATION ANALYSIS
D190V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "PCDH15 MUTATED"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "PCDH15 MUTATED"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "PCDH15 MUTATED"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
[1] "hr="     "7.7e+07"
D190V2, continuous
D190V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDH15 MUTATED     17    3
  PCDH15 WILD-TYPE  137   65
        clus
vv       PCDH15 MUTATED PCDH15 WILD-TYPE
  COLON              17              137
  RECTUM              3               65
D190V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDH15 MUTATED     10   10
  PCDH15 WILD-TYPE  107   97
        clus
vv       PCDH15 MUTATED PCDH15 WILD-TYPE
  FEMALE             10               97
  MALE               10              107
D190V5, multiclass
                                clus
vv                               PCDH15 MUTATED PCDH15 WILD-TYPE
  COLON ADENOCARCINOMA                       10              118
  COLON MUCINOUS ADENOCARCINOMA               7               17
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D190V6, multiclass
    clus
vv   PCDH15 MUTATED PCDH15 WILD-TYPE
  T1              1                8
  T2              3               44
  T3             13              137
  T4              2               15
D190V7, multiclass
    clus
vv   PCDH15 MUTATED PCDH15 WILD-TYPE
  N0             13              121
  N1              6               38
  N2              1               45
D190V8, multiclass
     clus
vv    PCDH15 MUTATED PCDH15 WILD-TYPE
  M0              18              171
  M1               1               30
  M1A              0                1
D190V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDH15 MUTATED     19    1
  PCDH15 WILD-TYPE  197    7
     clus
vv    PCDH15 MUTATED PCDH15 WILD-TYPE
  NO               1                7
  YES             19              197

Clustering(191) Variable = RWDD2B MUTATION ANALYSIS
D191V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE"   "RWDD2B MUTATED" "RWDD2B WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE"   "RWDD2B MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE"   "RWDD2B MUTATED" "RWDD2B WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "RWDD2B MUTATED" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"RWDD2B WILD-TYPE"   "RWDD2B MUTATED" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"RWDD2B WILD-TYPE"   "RWDD2B MUTATED" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE"   "RWDD2B MUTATED" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE"   "RWDD2B MUTATED" "RWDD2B WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE"   "RWDD2B MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE"   "RWDD2B MUTATED" "RWDD2B WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "RWDD2B MUTATED" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"RWDD2B WILD-TYPE"   "RWDD2B MUTATED" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"RWDD2B WILD-TYPE"   "RWDD2B MUTATED" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE"   "RWDD2B MUTATED" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE"   "RWDD2B MUTATED" "RWDD2B WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE"   "RWDD2B MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE"   "RWDD2B MUTATED" "RWDD2B WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "RWDD2B MUTATED" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"RWDD2B WILD-TYPE"   "RWDD2B MUTATED" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"RWDD2B WILD-TYPE"   "RWDD2B MUTATED" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE"   "RWDD2B MUTATED" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
[1] "hr=" "1.3"
D191V2, continuous
D191V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  RWDD2B MUTATED      5    3
  RWDD2B WILD-TYPE  149   65
        clus
vv       RWDD2B MUTATED RWDD2B WILD-TYPE
  COLON               5              149
  RECTUM              3               65
D191V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  RWDD2B MUTATED      4    4
  RWDD2B WILD-TYPE  113  103
        clus
vv       RWDD2B MUTATED RWDD2B WILD-TYPE
  FEMALE              4              103
  MALE                4              113
D191V5, multiclass
                                clus
vv                               RWDD2B MUTATED RWDD2B WILD-TYPE
  COLON ADENOCARCINOMA                        5              123
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D191V6, multiclass
    clus
vv   RWDD2B MUTATED RWDD2B WILD-TYPE
  T1              1                8
  T2              3               44
  T3              3              147
  T4              1               16
D191V7, multiclass
    clus
vv   RWDD2B MUTATED RWDD2B WILD-TYPE
  N0              7              127
  N1              1               43
  N2              0               46
D191V8, multiclass
     clus
vv    RWDD2B MUTATED RWDD2B WILD-TYPE
  M0               6              183
  M1               1               30
  M1A              0                1
D191V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  RWDD2B MUTATED      8    0
  RWDD2B WILD-TYPE  208    8
     clus
vv    RWDD2B MUTATED RWDD2B WILD-TYPE
  NO               0                8
  YES              8              208

Clustering(192) Variable = TMTC1 MUTATION ANALYSIS
D192V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
[1] "hr=" "1.2"
D192V2, continuous
D192V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TMTC1 MUTATED      9    4
  TMTC1 WILD-TYPE  145   64
        clus
vv       TMTC1 MUTATED TMTC1 WILD-TYPE
  COLON              9             145
  RECTUM             4              64
D192V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TMTC1 MUTATED      7    6
  TMTC1 WILD-TYPE  110  101
        clus
vv       TMTC1 MUTATED TMTC1 WILD-TYPE
  FEMALE             6             101
  MALE               7             110
D192V5, multiclass
                                clus
vv                               TMTC1 MUTATED TMTC1 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D192V6, multiclass
    clus
vv   TMTC1 MUTATED TMTC1 WILD-TYPE
  T1             1               8
  T2             3              44
  T3             8             142
  T4             1              16
D192V7, multiclass
    clus
vv   TMTC1 MUTATED TMTC1 WILD-TYPE
  N0             9             125
  N1             2              42
  N2             2              44
D192V8, multiclass
     clus
vv    TMTC1 MUTATED TMTC1 WILD-TYPE
  M0             12             177
  M1              0              31
  M1A             0               1
D192V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TMTC1 MUTATED     13    0
  TMTC1 WILD-TYPE  203    8
     clus
vv    TMTC1 MUTATED TMTC1 WILD-TYPE
  NO              0               8
  YES            13             203

Clustering(193) Variable = SH3GL3 MUTATION ANALYSIS
D193V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE"   "SH3GL3 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE"   "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SH3GL3 WILD-TYPE"   "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE"   "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE"   "SH3GL3 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE"   "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SH3GL3 WILD-TYPE"   "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE"   "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE"   "SH3GL3 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE"   "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SH3GL3 WILD-TYPE"   "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE"   "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
[1] "hr=" "2.1"
D193V2, continuous
D193V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SH3GL3 MUTATED      5    3
  SH3GL3 WILD-TYPE  149   65
        clus
vv       SH3GL3 MUTATED SH3GL3 WILD-TYPE
  COLON               5              149
  RECTUM              3               65
D193V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SH3GL3 MUTATED      3    5
  SH3GL3 WILD-TYPE  114  102
        clus
vv       SH3GL3 MUTATED SH3GL3 WILD-TYPE
  FEMALE              5              102
  MALE                3              114
D193V5, multiclass
                                clus
vv                               SH3GL3 MUTATED SH3GL3 WILD-TYPE
  COLON ADENOCARCINOMA                        5              123
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D193V6, multiclass
    clus
vv   SH3GL3 MUTATED SH3GL3 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              4              146
  T4              2               15
D193V7, multiclass
    clus
vv   SH3GL3 MUTATED SH3GL3 WILD-TYPE
  N0              6              128
  N1              2               42
  N2              0               46
D193V8, multiclass
     clus
vv    SH3GL3 MUTATED SH3GL3 WILD-TYPE
  M0               7              182
  M1               0               31
  M1A              0                1
D193V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SH3GL3 MUTATED      8    0
  SH3GL3 WILD-TYPE  208    8
     clus
vv    SH3GL3 MUTATED SH3GL3 WILD-TYPE
  NO               0                8
  YES              8              208

Clustering(194) Variable = RARB MUTATION ANALYSIS
D194V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE"   "RARB MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"RARB WILD-TYPE" "RARB WILD-TYPE"   "RARB MUTATED" "RARB WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"RARB WILD-TYPE"   "RARB MUTATED" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "RARB MUTATED" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"RARB WILD-TYPE"   "RARB MUTATED" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE"   "RARB MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"RARB WILD-TYPE" "RARB WILD-TYPE"   "RARB MUTATED" "RARB WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"RARB WILD-TYPE"   "RARB MUTATED" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "RARB MUTATED" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"RARB WILD-TYPE"   "RARB MUTATED" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE"   "RARB MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"RARB WILD-TYPE" "RARB WILD-TYPE"   "RARB MUTATED" "RARB WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"RARB WILD-TYPE"   "RARB MUTATED" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "RARB MUTATED" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"RARB WILD-TYPE"   "RARB MUTATED" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" "RARB WILD-TYPE" 
[1] "hr=" "2.2"
D194V2, continuous
D194V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RARB MUTATED      7    1
  RARB WILD-TYPE  147   67
        clus
vv       RARB MUTATED RARB WILD-TYPE
  COLON             7            147
  RECTUM            1             67
D194V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RARB MUTATED      3    5
  RARB WILD-TYPE  114  102
        clus
vv       RARB MUTATED RARB WILD-TYPE
  FEMALE            5            102
  MALE              3            114
D194V5, multiclass
                                clus
vv                               RARB MUTATED RARB WILD-TYPE
  COLON ADENOCARCINOMA                      3            125
  COLON MUCINOUS ADENOCARCINOMA             4             20
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D194V6, multiclass
    clus
vv   RARB MUTATED RARB WILD-TYPE
  T1            2              7
  T2            1             46
  T3            2            148
  T4            3             14
D194V7, multiclass
    clus
vv   RARB MUTATED RARB WILD-TYPE
  N0            6            128
  N1            1             43
  N2            1             45
D194V8, multiclass
     clus
vv    RARB MUTATED RARB WILD-TYPE
  M0             8            181
  M1             0             31
  M1A            0              1
D194V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RARB MUTATED      8    0
  RARB WILD-TYPE  208    8
     clus
vv    RARB MUTATED RARB WILD-TYPE
  NO             0              8
  YES            8            208

Clustering(195) Variable = CACNG7 MUTATION ANALYSIS
D195V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE"   "CACNG7 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE"   "CACNG7 MUTATED" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE"   "CACNG7 MUTATED"   "CACNG7 MUTATED" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE"   "CACNG7 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE"   "CACNG7 MUTATED" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE"   "CACNG7 MUTATED"   "CACNG7 MUTATED" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE"   "CACNG7 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE"   "CACNG7 MUTATED" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE"   "CACNG7 MUTATED"   "CACNG7 MUTATED" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
[1] "hr="     "7.8e+07"
D195V2, continuous
D195V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CACNG7 MUTATED      3    3
  CACNG7 WILD-TYPE  151   65
        clus
vv       CACNG7 MUTATED CACNG7 WILD-TYPE
  COLON               3              151
  RECTUM              3               65
D195V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CACNG7 MUTATED      2    4
  CACNG7 WILD-TYPE  115  103
        clus
vv       CACNG7 MUTATED CACNG7 WILD-TYPE
  FEMALE              4              103
  MALE                2              115
D195V5, multiclass
                                clus
vv                               CACNG7 MUTATED CACNG7 WILD-TYPE
  COLON ADENOCARCINOMA                        2              126
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D195V6, multiclass
    clus
vv   CACNG7 MUTATED CACNG7 WILD-TYPE
  T1              0                9
  T2              1               46
  T3              5              145
  T4              0               17
D195V7, multiclass
    clus
vv   CACNG7 MUTATED CACNG7 WILD-TYPE
  N0              5              129
  N1              1               43
  N2              0               46
D195V8, multiclass
     clus
vv    CACNG7 MUTATED CACNG7 WILD-TYPE
  M0               6              183
  M1               0               31
  M1A              0                1
D195V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CACNG7 MUTATED      6    0
  CACNG7 WILD-TYPE  210    8
     clus
vv    CACNG7 MUTATED CACNG7 WILD-TYPE
  NO               0                8
  YES              6              210

Clustering(196) Variable = GRIN2A MUTATION ANALYSIS
D196V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
  "GRIN2A MUTATED"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "GRIN2A MUTATED"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
  "GRIN2A MUTATED"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "GRIN2A MUTATED"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
  "GRIN2A MUTATED"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "GRIN2A MUTATED"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
[1] "hr=" "1.8"
D196V2, continuous
D196V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GRIN2A MUTATED     15    4
  GRIN2A WILD-TYPE  139   64
        clus
vv       GRIN2A MUTATED GRIN2A WILD-TYPE
  COLON              15              139
  RECTUM              4               64
D196V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GRIN2A MUTATED     12    7
  GRIN2A WILD-TYPE  105  100
        clus
vv       GRIN2A MUTATED GRIN2A WILD-TYPE
  FEMALE              7              100
  MALE               12              105
D196V5, multiclass
                                clus
vv                               GRIN2A MUTATED GRIN2A WILD-TYPE
  COLON ADENOCARCINOMA                       13              115
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       4               53
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D196V6, multiclass
    clus
vv   GRIN2A MUTATED GRIN2A WILD-TYPE
  T1              0                9
  T2              3               44
  T3             13              137
  T4              3               14
D196V7, multiclass
    clus
vv   GRIN2A MUTATED GRIN2A WILD-TYPE
  N0             11              123
  N1              7               37
  N2              1               45
D196V8, multiclass
     clus
vv    GRIN2A MUTATED GRIN2A WILD-TYPE
  M0              16              173
  M1               2               29
  M1A              0                1
D196V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GRIN2A MUTATED     19    0
  GRIN2A WILD-TYPE  197    8
     clus
vv    GRIN2A MUTATED GRIN2A WILD-TYPE
  NO               0                8
  YES             19              197

Clustering(197) Variable = SPAG17 MUTATION ANALYSIS
D197V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
  "SPAG17 MUTATED" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE"   "SPAG17 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE"   "SPAG17 MUTATED" "SPAG17 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SPAG17 WILD-TYPE"   "SPAG17 MUTATED" "SPAG17 WILD-TYPE"   "SPAG17 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SPAG17 WILD-TYPE"   "SPAG17 MUTATED" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SPAG17 MUTATED" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
  "SPAG17 MUTATED" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE"   "SPAG17 MUTATED" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SPAG17 WILD-TYPE"   "SPAG17 MUTATED" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SPAG17 MUTATED" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
  "SPAG17 MUTATED" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE"   "SPAG17 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE"   "SPAG17 MUTATED" "SPAG17 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SPAG17 WILD-TYPE"   "SPAG17 MUTATED" "SPAG17 WILD-TYPE"   "SPAG17 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SPAG17 WILD-TYPE"   "SPAG17 MUTATED" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SPAG17 MUTATED" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
  "SPAG17 MUTATED" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE"   "SPAG17 MUTATED" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SPAG17 WILD-TYPE"   "SPAG17 MUTATED" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SPAG17 MUTATED" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
  "SPAG17 MUTATED" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE"   "SPAG17 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE"   "SPAG17 MUTATED" "SPAG17 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SPAG17 WILD-TYPE"   "SPAG17 MUTATED" "SPAG17 WILD-TYPE"   "SPAG17 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SPAG17 WILD-TYPE"   "SPAG17 MUTATED" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SPAG17 MUTATED" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
  "SPAG17 MUTATED" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE"   "SPAG17 MUTATED" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SPAG17 WILD-TYPE"   "SPAG17 MUTATED" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SPAG17 MUTATED" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
[1] "hr=" "2.4"
D197V2, continuous
D197V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPAG17 MUTATED     13    4
  SPAG17 WILD-TYPE  141   64
        clus
vv       SPAG17 MUTATED SPAG17 WILD-TYPE
  COLON              13              141
  RECTUM              4               64
D197V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPAG17 MUTATED      8    9
  SPAG17 WILD-TYPE  109   98
        clus
vv       SPAG17 MUTATED SPAG17 WILD-TYPE
  FEMALE              9               98
  MALE                8              109
D197V5, multiclass
                                clus
vv                               SPAG17 MUTATED SPAG17 WILD-TYPE
  COLON ADENOCARCINOMA                        9              119
  COLON MUCINOUS ADENOCARCINOMA               4               20
  RECTAL ADENOCARCINOMA                       4               53
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D197V6, multiclass
    clus
vv   SPAG17 MUTATED SPAG17 WILD-TYPE
  T1              0                9
  T2              5               42
  T3              9              141
  T4              3               14
D197V7, multiclass
    clus
vv   SPAG17 MUTATED SPAG17 WILD-TYPE
  N0             10              124
  N1              3               41
  N2              4               42
D197V8, multiclass
     clus
vv    SPAG17 MUTATED SPAG17 WILD-TYPE
  M0              13              176
  M1               3               28
  M1A              0                1
D197V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPAG17 MUTATED     16    1
  SPAG17 WILD-TYPE  200    7
     clus
vv    SPAG17 MUTATED SPAG17 WILD-TYPE
  NO               1                7
  YES             16              200

Clustering(198) Variable = FLRT2 MUTATION ANALYSIS
D198V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE"   "FLRT2 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FLRT2 WILD-TYPE"   "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE"   "FLRT2 MUTATED" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FLRT2 WILD-TYPE"   "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE"   "FLRT2 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FLRT2 WILD-TYPE"   "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE"   "FLRT2 MUTATED" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FLRT2 WILD-TYPE"   "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE"   "FLRT2 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FLRT2 WILD-TYPE"   "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE"   "FLRT2 MUTATED" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FLRT2 WILD-TYPE"   "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
[1] "hr=" "1.4"
D198V2, continuous
D198V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FLRT2 MUTATED     11    2
  FLRT2 WILD-TYPE  143   66
        clus
vv       FLRT2 MUTATED FLRT2 WILD-TYPE
  COLON             11             143
  RECTUM             2              66
D198V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FLRT2 MUTATED      5    8
  FLRT2 WILD-TYPE  112   99
        clus
vv       FLRT2 MUTATED FLRT2 WILD-TYPE
  FEMALE             8              99
  MALE               5             112
D198V5, multiclass
                                clus
vv                               FLRT2 MUTATED FLRT2 WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D198V6, multiclass
    clus
vv   FLRT2 MUTATED FLRT2 WILD-TYPE
  T1             2               7
  T2             1              46
  T3             7             143
  T4             2              15
D198V7, multiclass
    clus
vv   FLRT2 MUTATED FLRT2 WILD-TYPE
  N0            10             124
  N1             1              43
  N2             2              44
D198V8, multiclass
     clus
vv    FLRT2 MUTATED FLRT2 WILD-TYPE
  M0             13             176
  M1              0              31
  M1A             0               1
D198V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FLRT2 MUTATED     12    1
  FLRT2 WILD-TYPE  204    7
     clus
vv    FLRT2 MUTATED FLRT2 WILD-TYPE
  NO              1               7
  YES            12             204

Clustering(199) Variable = KCNQ3 MUTATION ANALYSIS
D199V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "KCNQ3 MUTATED" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE"   "KCNQ3 MUTATED" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNQ3 WILD-TYPE"   "KCNQ3 MUTATED" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "KCNQ3 MUTATED" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KCNQ3 WILD-TYPE"   "KCNQ3 MUTATED" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "KCNQ3 MUTATED" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE"   "KCNQ3 MUTATED" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNQ3 WILD-TYPE"   "KCNQ3 MUTATED" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "KCNQ3 MUTATED" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KCNQ3 WILD-TYPE"   "KCNQ3 MUTATED" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "KCNQ3 MUTATED" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE"   "KCNQ3 MUTATED" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNQ3 WILD-TYPE"   "KCNQ3 MUTATED" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "KCNQ3 MUTATED" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KCNQ3 WILD-TYPE"   "KCNQ3 MUTATED" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
[1] "hr=" "2.7"
D199V2, continuous
D199V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNQ3 MUTATED     10    3
  KCNQ3 WILD-TYPE  144   65
        clus
vv       KCNQ3 MUTATED KCNQ3 WILD-TYPE
  COLON             10             144
  RECTUM             3              65
D199V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNQ3 MUTATED      6    7
  KCNQ3 WILD-TYPE  111  100
        clus
vv       KCNQ3 MUTATED KCNQ3 WILD-TYPE
  FEMALE             7             100
  MALE               6             111
D199V5, multiclass
                                clus
vv                               KCNQ3 MUTATED KCNQ3 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D199V6, multiclass
    clus
vv   KCNQ3 MUTATED KCNQ3 WILD-TYPE
  T1             0               9
  T2             3              44
  T3             8             142
  T4             2              15
D199V7, multiclass
    clus
vv   KCNQ3 MUTATED KCNQ3 WILD-TYPE
  N0             9             125
  N1             2              42
  N2             2              44
D199V8, multiclass
     clus
vv    KCNQ3 MUTATED KCNQ3 WILD-TYPE
  M0             11             178
  M1              2              29
  M1A             0               1
D199V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNQ3 MUTATED     13    0
  KCNQ3 WILD-TYPE  203    8
     clus
vv    KCNQ3 MUTATED KCNQ3 WILD-TYPE
  NO              0               8
  YES            13             203

Clustering(200) Variable = LRRIQ1 MUTATION ANALYSIS
D200V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED"   "LRRIQ1 MUTATED" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED"   "LRRIQ1 MUTATED" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED"   "LRRIQ1 MUTATED" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
[1] "hr=" "3.6"
D200V2, continuous
D200V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRIQ1 MUTATED     12    2
  LRRIQ1 WILD-TYPE  142   66
        clus
vv       LRRIQ1 MUTATED LRRIQ1 WILD-TYPE
  COLON              12              142
  RECTUM              2               66
D200V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRIQ1 MUTATED      7    7
  LRRIQ1 WILD-TYPE  110  100
        clus
vv       LRRIQ1 MUTATED LRRIQ1 WILD-TYPE
  FEMALE              7              100
  MALE                7              110
D200V5, multiclass
                                clus
vv                               LRRIQ1 MUTATED LRRIQ1 WILD-TYPE
  COLON ADENOCARCINOMA                        7              121
  COLON MUCINOUS ADENOCARCINOMA               5               19
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D200V6, multiclass
    clus
vv   LRRIQ1 MUTATED LRRIQ1 WILD-TYPE
  T1              1                8
  T2              3               44
  T3              6              144
  T4              4               13
D200V7, multiclass
    clus
vv   LRRIQ1 MUTATED LRRIQ1 WILD-TYPE
  N0             11              123
  N1              1               43
  N2              2               44
D200V8, multiclass
     clus
vv    LRRIQ1 MUTATED LRRIQ1 WILD-TYPE
  M0              11              178
  M1               2               29
  M1A              0                1
D200V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRIQ1 MUTATED     14    0
  LRRIQ1 WILD-TYPE  202    8
     clus
vv    LRRIQ1 MUTATED LRRIQ1 WILD-TYPE
  NO               0                8
  YES             14              202

Clustering(201) Variable = PCDH10 MUTATION ANALYSIS
D201V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDH10 MUTATED"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDH10 MUTATED"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDH10 MUTATED"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
[1] "hr="     "8.1e+07"
D201V2, continuous
D201V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDH10 MUTATED     14    3
  PCDH10 WILD-TYPE  140   65
        clus
vv       PCDH10 MUTATED PCDH10 WILD-TYPE
  COLON              14              140
  RECTUM              3               65
D201V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDH10 MUTATED      6   11
  PCDH10 WILD-TYPE  111   96
        clus
vv       PCDH10 MUTATED PCDH10 WILD-TYPE
  FEMALE             11               96
  MALE                6              111
D201V5, multiclass
                                clus
vv                               PCDH10 MUTATED PCDH10 WILD-TYPE
  COLON ADENOCARCINOMA                       10              118
  COLON MUCINOUS ADENOCARCINOMA               4               20
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D201V6, multiclass
    clus
vv   PCDH10 MUTATED PCDH10 WILD-TYPE
  T1              1                8
  T2              2               45
  T3             11              139
  T4              2               15
D201V7, multiclass
    clus
vv   PCDH10 MUTATED PCDH10 WILD-TYPE
  N0              9              125
  N1              5               39
  N2              3               43
D201V8, multiclass
     clus
vv    PCDH10 MUTATED PCDH10 WILD-TYPE
  M0              16              173
  M1               1               30
  M1A              0                1
D201V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDH10 MUTATED     16    1
  PCDH10 WILD-TYPE  200    7
     clus
vv    PCDH10 MUTATED PCDH10 WILD-TYPE
  NO               1                7
  YES             16              200

Clustering(202) Variable = ZCWPW2 MUTATION ANALYSIS
D202V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D202V2, continuous
D202V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZCWPW2 MUTATED      4    3
  ZCWPW2 WILD-TYPE  150   65
        clus
vv       ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  COLON               4              150
  RECTUM              3               65
D202V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZCWPW2 MUTATED      3    4
  ZCWPW2 WILD-TYPE  114  103
        clus
vv       ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  FEMALE              4              103
  MALE                3              114
D202V5, multiclass
                                clus
vv                               ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  COLON ADENOCARCINOMA                        3              125
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D202V6, multiclass
    clus
vv   ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  T1              0                9
  T2              3               44
  T3              2              148
  T4              2               15
D202V7, multiclass
    clus
vv   ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  N0              7              127
  N1              0               44
  N2              0               46
D202V8, multiclass
     clus
vv    ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  M0               5              184
  M1               1               30
  M1A              0                1
D202V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZCWPW2 MUTATED      6    1
  ZCWPW2 WILD-TYPE  210    7
     clus
vv    ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  NO               1                7
  YES              6              210

Clustering(203) Variable = CNTNAP4 MUTATION ANALYSIS
D203V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
[1] "hr=" "2.1"
D203V2, continuous
D203V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CNTNAP4 MUTATED     11    1
  CNTNAP4 WILD-TYPE  143   67
        clus
vv       CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  COLON               11               143
  RECTUM               1                67
D203V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CNTNAP4 MUTATED      6    6
  CNTNAP4 WILD-TYPE  111  101
        clus
vv       CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  FEMALE               6               101
  MALE                 6               111
D203V5, multiclass
                                clus
vv                               CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  COLON ADENOCARCINOMA                         7               121
  COLON MUCINOUS ADENOCARCINOMA                4                20
  RECTAL ADENOCARCINOMA                        1                56
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D203V6, multiclass
    clus
vv   CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  T1               0                 9
  T2               2                45
  T3               6               144
  T4               4                13
D203V7, multiclass
    clus
vv   CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  N0              11               123
  N1               0                44
  N2               1                45
D203V8, multiclass
     clus
vv    CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  M0               11               178
  M1                0                31
  M1A               0                 1
D203V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CNTNAP4 MUTATED     12    0
  CNTNAP4 WILD-TYPE  204    8
     clus
vv    CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  NO                0                 8
  YES              12               204

Clustering(204) Variable = HMGN5 MUTATION ANALYSIS
D204V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE"   "HMGN5 MUTATED" "HMGN5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "HMGN5 MUTATED" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE"   "HMGN5 MUTATED" "HMGN5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "HMGN5 MUTATED" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE"   "HMGN5 MUTATED" "HMGN5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "HMGN5 MUTATED" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
[1] "Remove cluster labels:" "HMGN5 MUTATED"         
clus
  HMGN5 MUTATED HMGN5 WILD-TYPE 
              2             118 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3811      TCGA-AA-3818 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3846 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877      TCGA-AA-3939 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3952 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977      TCGA-AA-3986 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024      TCGA-AA-A029 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02O 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689      TCGA-AF-2691 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A008 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A025 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N      TCGA-AG-A02X 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
     TCGA-AG-A032      TCGA-AG-A036 
"HMGN5 WILD-TYPE" "HMGN5 WILD-TYPE" 
D204V2, continuous
D204V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HMGN5 MUTATED      2    1
  HMGN5 WILD-TYPE  152   67
        clus
vv       HMGN5 MUTATED HMGN5 WILD-TYPE
  COLON              2             152
  RECTUM             1              67
D204V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HMGN5 MUTATED      2    1
  HMGN5 WILD-TYPE  115  106
        clus
vv       HMGN5 MUTATED HMGN5 WILD-TYPE
  FEMALE             1             106
  MALE               2             115
D204V5, multiclass
                                clus
vv                               HMGN5 MUTATED HMGN5 WILD-TYPE
  COLON ADENOCARCINOMA                       2             126
  COLON MUCINOUS ADENOCARCINOMA              0              24
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D204V6, multiclass
    clus
vv   HMGN5 MUTATED HMGN5 WILD-TYPE
  T1             0               9
  T2             1              46
  T3             2             148
  T4             0              17
D204V7, multiclass
    clus
vv   HMGN5 MUTATED HMGN5 WILD-TYPE
  N0             3             131
  N1             0              44
  N2             0              46
D204V8, multiclass
     clus
vv    HMGN5 MUTATED HMGN5 WILD-TYPE
  M0              3             186
  M1              0              31
  M1A             0               1
D204V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HMGN5 MUTATED      3    0
  HMGN5 WILD-TYPE  213    8
     clus
vv    HMGN5 MUTATED HMGN5 WILD-TYPE
  NO              0               8
  YES             3             213

Clustering(205) Variable = MAGEC2 MUTATION ANALYSIS
D205V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
  "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
  "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
  "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
[1] "hr=" "4.9"
D205V2, continuous
D205V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEC2 MUTATED      4    3
  MAGEC2 WILD-TYPE  150   65
        clus
vv       MAGEC2 MUTATED MAGEC2 WILD-TYPE
  COLON               4              150
  RECTUM              3               65
D205V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEC2 MUTATED      1    6
  MAGEC2 WILD-TYPE  116  101
        clus
vv       MAGEC2 MUTATED MAGEC2 WILD-TYPE
  FEMALE              6              101
  MALE                1              116
D205V5, multiclass
                                clus
vv                               MAGEC2 MUTATED MAGEC2 WILD-TYPE
  COLON ADENOCARCINOMA                        3              125
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D205V6, multiclass
    clus
vv   MAGEC2 MUTATED MAGEC2 WILD-TYPE
  T1              0                9
  T2              1               46
  T3              5              145
  T4              1               16
D205V7, multiclass
    clus
vv   MAGEC2 MUTATED MAGEC2 WILD-TYPE
  N0              6              128
  N1              0               44
  N2              1               45
D205V8, multiclass
     clus
vv    MAGEC2 MUTATED MAGEC2 WILD-TYPE
  M0               7              182
  M1               0               31
  M1A              0                1
D205V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEC2 MUTATED      7    0
  MAGEC2 WILD-TYPE  209    8
     clus
vv    MAGEC2 MUTATED MAGEC2 WILD-TYPE
  NO               0                8
  YES              7              209

Clustering(206) Variable = ATP7A MUTATION ANALYSIS
D206V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE"   "ATP7A MUTATED" "ATP7A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE"   "ATP7A MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE"   "ATP7A MUTATED" "ATP7A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE"   "ATP7A MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE"   "ATP7A MUTATED" "ATP7A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE"   "ATP7A MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
[1] "Remove cluster labels:" "ATP7A MUTATED"         
clus
  ATP7A MUTATED ATP7A WILD-TYPE 
              2             118 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-3807      TCGA-A6-3808 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526      TCGA-AA-3555 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679      TCGA-AA-3685 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3818 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3846 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877      TCGA-AA-3939 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3952 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977      TCGA-AA-3986 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024      TCGA-AA-A029 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02O 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03J      TCGA-AY-4070 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AY-4071      TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581      TCGA-AG-3582 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599      TCGA-AG-3726 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887      TCGA-AG-3892 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999      TCGA-AG-4001 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002      TCGA-AG-A008 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A025 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N      TCGA-AG-A02X 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A032      TCGA-AG-A036 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
D206V2, continuous
D206V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ATP7A MUTATED      5    1
  ATP7A WILD-TYPE  149   67
        clus
vv       ATP7A MUTATED ATP7A WILD-TYPE
  COLON              5             149
  RECTUM             1              67
D206V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ATP7A MUTATED      2    4
  ATP7A WILD-TYPE  115  103
        clus
vv       ATP7A MUTATED ATP7A WILD-TYPE
  FEMALE             4             103
  MALE               2             115
D206V5, multiclass
                                clus
vv                               ATP7A MUTATED ATP7A WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      0              57
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D206V6, multiclass
    clus
vv   ATP7A MUTATED ATP7A WILD-TYPE
  T1             0               9
  T2             0              47
  T3             3             147
  T4             3              14
D206V7, multiclass
    clus
vv   ATP7A MUTATED ATP7A WILD-TYPE
  N0             2             132
  N1             2              42
  N2             2              44
D206V8, multiclass
     clus
vv    ATP7A MUTATED ATP7A WILD-TYPE
  M0              4             185
  M1              2              29
  M1A             0               1
D206V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ATP7A MUTATED      5    1
  ATP7A WILD-TYPE  211    7
     clus
vv    ATP7A MUTATED ATP7A WILD-TYPE
  NO              1               7
  YES             5             211

Clustering(207) Variable = GSK3B MUTATION ANALYSIS
D207V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "GSK3B MUTATED" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GSK3B WILD-TYPE"   "GSK3B MUTATED" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE"   "GSK3B MUTATED" "GSK3B WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "GSK3B MUTATED" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "GSK3B MUTATED" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GSK3B WILD-TYPE"   "GSK3B MUTATED" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE"   "GSK3B MUTATED" "GSK3B WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "GSK3B MUTATED" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "GSK3B MUTATED" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GSK3B WILD-TYPE"   "GSK3B MUTATED" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE"   "GSK3B MUTATED" "GSK3B WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "GSK3B MUTATED" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
[1] "hr="     "2.5e+07"
D207V2, continuous
D207V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GSK3B MUTATED      6    1
  GSK3B WILD-TYPE  148   67
        clus
vv       GSK3B MUTATED GSK3B WILD-TYPE
  COLON              6             148
  RECTUM             1              67
D207V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GSK3B MUTATED      3    4
  GSK3B WILD-TYPE  114  103
        clus
vv       GSK3B MUTATED GSK3B WILD-TYPE
  FEMALE             4             103
  MALE               3             114
D207V5, multiclass
                                clus
vv                               GSK3B MUTATED GSK3B WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D207V6, multiclass
    clus
vv   GSK3B MUTATED GSK3B WILD-TYPE
  T1             0               9
  T2             2              45
  T3             4             146
  T4             1              16
D207V7, multiclass
    clus
vv   GSK3B MUTATED GSK3B WILD-TYPE
  N0             6             128
  N1             0              44
  N2             1              45
D207V8, multiclass
     clus
vv    GSK3B MUTATED GSK3B WILD-TYPE
  M0              7             182
  M1              0              31
  M1A             0               1
D207V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GSK3B MUTATED      7    0
  GSK3B WILD-TYPE  209    8
     clus
vv    GSK3B MUTATED GSK3B WILD-TYPE
  NO              0               8
  YES             7             209

Clustering(208) Variable = NELL1 MUTATION ANALYSIS
D208V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
[1] "hr="     "7.5e+07"
D208V2, continuous
D208V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NELL1 MUTATED     10    2
  NELL1 WILD-TYPE  144   66
        clus
vv       NELL1 MUTATED NELL1 WILD-TYPE
  COLON             10             144
  RECTUM             2              66
D208V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NELL1 MUTATED      6    6
  NELL1 WILD-TYPE  111  101
        clus
vv       NELL1 MUTATED NELL1 WILD-TYPE
  FEMALE             6             101
  MALE               6             111
D208V5, multiclass
                                clus
vv                               NELL1 MUTATED NELL1 WILD-TYPE
  COLON ADENOCARCINOMA                       5             123
  COLON MUCINOUS ADENOCARCINOMA              5              19
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D208V6, multiclass
    clus
vv   NELL1 MUTATED NELL1 WILD-TYPE
  T1             0               9
  T2             4              43
  T3             5             145
  T4             3              14
D208V7, multiclass
    clus
vv   NELL1 MUTATED NELL1 WILD-TYPE
  N0            10             124
  N1             1              43
  N2             1              45
D208V8, multiclass
     clus
vv    NELL1 MUTATED NELL1 WILD-TYPE
  M0             11             178
  M1              0              31
  M1A             0               1
D208V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NELL1 MUTATED     12    0
  NELL1 WILD-TYPE  204    8
     clus
vv    NELL1 MUTATED NELL1 WILD-TYPE
  NO              0               8
  YES            12             204

Clustering(209) Variable = SORCS1 MUTATION ANALYSIS
D209V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
[1] "hr=" "4.8"
D209V2, continuous
D209V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SORCS1 MUTATED     11    4
  SORCS1 WILD-TYPE  143   64
        clus
vv       SORCS1 MUTATED SORCS1 WILD-TYPE
  COLON              11              143
  RECTUM              4               64
D209V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SORCS1 MUTATED      8    7
  SORCS1 WILD-TYPE  109  100
        clus
vv       SORCS1 MUTATED SORCS1 WILD-TYPE
  FEMALE              7              100
  MALE                8              109
D209V5, multiclass
                                clus
vv                               SORCS1 MUTATED SORCS1 WILD-TYPE
  COLON ADENOCARCINOMA                        9              119
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D209V6, multiclass
    clus
vv   SORCS1 MUTATED SORCS1 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              8              142
  T4              5               12
D209V7, multiclass
    clus
vv   SORCS1 MUTATED SORCS1 WILD-TYPE
  N0             11              123
  N1              3               41
  N2              1               45
D209V8, multiclass
     clus
vv    SORCS1 MUTATED SORCS1 WILD-TYPE
  M0              12              177
  M1               2               29
  M1A              0                1
D209V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SORCS1 MUTATED     15    0
  SORCS1 WILD-TYPE  201    8
     clus
vv    SORCS1 MUTATED SORCS1 WILD-TYPE
  NO               0                8
  YES             15              201

Clustering(210) Variable = SYNC MUTATION ANALYSIS
D210V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SYNC WILD-TYPE" "SYNC WILD-TYPE"   "SYNC MUTATED" "SYNC WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SYNC WILD-TYPE"   "SYNC MUTATED" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE"   "SYNC MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "SYNC MUTATED" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SYNC WILD-TYPE" "SYNC WILD-TYPE"   "SYNC MUTATED" "SYNC WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SYNC WILD-TYPE"   "SYNC MUTATED" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE"   "SYNC MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "SYNC MUTATED" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SYNC WILD-TYPE" "SYNC WILD-TYPE"   "SYNC MUTATED" "SYNC WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SYNC WILD-TYPE"   "SYNC MUTATED" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE"   "SYNC MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "SYNC MUTATED" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" "SYNC WILD-TYPE" 
[1] "hr=" "4.6"
D210V2, continuous
D210V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SYNC MUTATED      4    1
  SYNC WILD-TYPE  150   67
        clus
vv       SYNC MUTATED SYNC WILD-TYPE
  COLON             4            150
  RECTUM            1             67
D210V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SYNC MUTATED      3    2
  SYNC WILD-TYPE  114  105
        clus
vv       SYNC MUTATED SYNC WILD-TYPE
  FEMALE            2            105
  MALE              3            114
D210V5, multiclass
                                clus
vv                               SYNC MUTATED SYNC WILD-TYPE
  COLON ADENOCARCINOMA                      2            126
  COLON MUCINOUS ADENOCARCINOMA             2             22
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D210V6, multiclass
    clus
vv   SYNC MUTATED SYNC WILD-TYPE
  T1            0              9
  T2            1             46
  T3            2            148
  T4            2             15
D210V7, multiclass
    clus
vv   SYNC MUTATED SYNC WILD-TYPE
  N0            4            130
  N1            1             43
  N2            0             46
D210V8, multiclass
     clus
vv    SYNC MUTATED SYNC WILD-TYPE
  M0             5            184
  M1             0             31
  M1A            0              1
D210V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SYNC MUTATED      5    0
  SYNC WILD-TYPE  211    8
     clus
vv    SYNC MUTATED SYNC WILD-TYPE
  NO             0              8
  YES            5            211

Clustering(211) Variable = HTR1E MUTATION ANALYSIS
D211V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
  "HTR1E MUTATED" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE"   "HTR1E MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE"   "HTR1E MUTATED" "HTR1E WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "HTR1E MUTATED" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE"   "HTR1E MUTATED" "HTR1E WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
  "HTR1E MUTATED" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE"   "HTR1E MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE"   "HTR1E MUTATED" "HTR1E WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "HTR1E MUTATED" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE"   "HTR1E MUTATED" "HTR1E WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
  "HTR1E MUTATED" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE"   "HTR1E MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE"   "HTR1E MUTATED" "HTR1E WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "HTR1E MUTATED" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE"   "HTR1E MUTATED" "HTR1E WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" "HTR1E WILD-TYPE" 
[1] "hr="     "2.7e+07"
D211V2, continuous
D211V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HTR1E MUTATED      5    2
  HTR1E WILD-TYPE  149   66
        clus
vv       HTR1E MUTATED HTR1E WILD-TYPE
  COLON              5             149
  RECTUM             2              66
D211V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HTR1E MUTATED      4    3
  HTR1E WILD-TYPE  113  104
        clus
vv       HTR1E MUTATED HTR1E WILD-TYPE
  FEMALE             3             104
  MALE               4             113
D211V5, multiclass
                                clus
vv                               HTR1E MUTATED HTR1E WILD-TYPE
  COLON ADENOCARCINOMA                       5             123
  COLON MUCINOUS ADENOCARCINOMA              0              24
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D211V6, multiclass
    clus
vv   HTR1E MUTATED HTR1E WILD-TYPE
  T1             0               9
  T2             3              44
  T3             4             146
  T4             0              17
D211V7, multiclass
    clus
vv   HTR1E MUTATED HTR1E WILD-TYPE
  N0             6             128
  N1             0              44
  N2             1              45
D211V8, multiclass
     clus
vv    HTR1E MUTATED HTR1E WILD-TYPE
  M0              6             183
  M1              0              31
  M1A             0               1
D211V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HTR1E MUTATED      6    1
  HTR1E WILD-TYPE  210    7
     clus
vv    HTR1E MUTATED HTR1E WILD-TYPE
  NO              1               7
  YES             6             210

Clustering(212) Variable = ISL1 MUTATION ANALYSIS
D212V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE"   "ISL1 MUTATED"   "ISL1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE"   "ISL1 MUTATED" "ISL1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "ISL1 MUTATED" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ISL1 MUTATED" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE"   "ISL1 MUTATED"   "ISL1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE"   "ISL1 MUTATED" "ISL1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "ISL1 MUTATED" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ISL1 MUTATED" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE"   "ISL1 MUTATED"   "ISL1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE"   "ISL1 MUTATED" "ISL1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "ISL1 MUTATED" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ISL1 MUTATED" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
[1] "hr="     "9300000"
D212V2, continuous
D212V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ISL1 MUTATED      8    0
  ISL1 WILD-TYPE  146   68
        clus
vv       ISL1 MUTATED ISL1 WILD-TYPE
  COLON             8            146
  RECTUM            0             68
D212V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ISL1 MUTATED      5    3
  ISL1 WILD-TYPE  112  104
        clus
vv       ISL1 MUTATED ISL1 WILD-TYPE
  FEMALE            3            104
  MALE              5            112
D212V5, multiclass
                                clus
vv                               ISL1 MUTATED ISL1 WILD-TYPE
  COLON ADENOCARCINOMA                      8            120
  COLON MUCINOUS ADENOCARCINOMA             0             24
  RECTAL ADENOCARCINOMA                     0             57
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D212V6, multiclass
    clus
vv   ISL1 MUTATED ISL1 WILD-TYPE
  T1            0              9
  T2            1             46
  T3            6            144
  T4            1             16
D212V7, multiclass
    clus
vv   ISL1 MUTATED ISL1 WILD-TYPE
  N0            3            131
  N1            4             40
  N2            1             45
D212V8, multiclass
     clus
vv    ISL1 MUTATED ISL1 WILD-TYPE
  M0             7            182
  M1             1             30
  M1A            0              1
D212V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ISL1 MUTATED      8    0
  ISL1 WILD-TYPE  208    8
     clus
vv    ISL1 MUTATED ISL1 WILD-TYPE
  NO             0              8
  YES            8            208

Clustering(213) Variable = ROBO1 MUTATION ANALYSIS
D213V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE"   "ROBO1 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE"   "ROBO1 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE"   "ROBO1 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
[1] "hr=" "1.4"
D213V2, continuous
D213V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ROBO1 MUTATED     15    4
  ROBO1 WILD-TYPE  139   64
        clus
vv       ROBO1 MUTATED ROBO1 WILD-TYPE
  COLON             15             139
  RECTUM             4              64
D213V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ROBO1 MUTATED     11    8
  ROBO1 WILD-TYPE  106   99
        clus
vv       ROBO1 MUTATED ROBO1 WILD-TYPE
  FEMALE             8              99
  MALE              11             106
D213V5, multiclass
                                clus
vv                               ROBO1 MUTATED ROBO1 WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              6              18
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D213V6, multiclass
    clus
vv   ROBO1 MUTATED ROBO1 WILD-TYPE
  T1             1               8
  T2             2              45
  T3            12             138
  T4             4              13
D213V7, multiclass
    clus
vv   ROBO1 MUTATED ROBO1 WILD-TYPE
  N0            14             120
  N1             2              42
  N2             3              43
D213V8, multiclass
     clus
vv    ROBO1 MUTATED ROBO1 WILD-TYPE
  M0             17             172
  M1              2              29
  M1A             0               1
D213V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ROBO1 MUTATED     18    1
  ROBO1 WILD-TYPE  198    7
     clus
vv    ROBO1 MUTATED ROBO1 WILD-TYPE
  NO              1               7
  YES            18             198

Clustering(214) Variable = LRTM1 MUTATION ANALYSIS
D214V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE"   "LRTM1 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE"   "LRTM1 MUTATED" "LRTM1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "LRTM1 MUTATED"   "LRTM1 MUTATED" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LRTM1 WILD-TYPE"   "LRTM1 MUTATED" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LRTM1 MUTATED" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE"   "LRTM1 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE"   "LRTM1 MUTATED" "LRTM1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "LRTM1 MUTATED"   "LRTM1 MUTATED" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LRTM1 WILD-TYPE"   "LRTM1 MUTATED" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LRTM1 MUTATED" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE"   "LRTM1 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE"   "LRTM1 MUTATED" "LRTM1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "LRTM1 MUTATED"   "LRTM1 MUTATED" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LRTM1 WILD-TYPE"   "LRTM1 MUTATED" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LRTM1 MUTATED" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
[1] "hr=" "1.7"
D214V2, continuous
D214V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRTM1 MUTATED      5    2
  LRTM1 WILD-TYPE  149   66
        clus
vv       LRTM1 MUTATED LRTM1 WILD-TYPE
  COLON              5             149
  RECTUM             2              66
D214V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRTM1 MUTATED      5    2
  LRTM1 WILD-TYPE  112  105
        clus
vv       LRTM1 MUTATED LRTM1 WILD-TYPE
  FEMALE             2             105
  MALE               5             112
D214V5, multiclass
                                clus
vv                               LRTM1 MUTATED LRTM1 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D214V6, multiclass
    clus
vv   LRTM1 MUTATED LRTM1 WILD-TYPE
  T1             1               8
  T2             2              45
  T3             3             147
  T4             1              16
D214V7, multiclass
    clus
vv   LRTM1 MUTATED LRTM1 WILD-TYPE
  N0             5             129
  N1             1              43
  N2             1              45
D214V8, multiclass
     clus
vv    LRTM1 MUTATED LRTM1 WILD-TYPE
  M0              7             182
  M1              0              31
  M1A             0               1
D214V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRTM1 MUTATED      7    0
  LRTM1 WILD-TYPE  209    8
     clus
vv    LRTM1 MUTATED LRTM1 WILD-TYPE
  NO              0               8
  YES             7             209

Clustering(215) Variable = LEPREL1 MUTATION ANALYSIS
D215V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE"   "LEPREL1 MUTATED" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"LEPREL1 WILD-TYPE"   "LEPREL1 MUTATED" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
  "LEPREL1 MUTATED" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE"   "LEPREL1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
  "LEPREL1 MUTATED" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"LEPREL1 WILD-TYPE"   "LEPREL1 MUTATED" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "LEPREL1 MUTATED" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "LEPREL1 MUTATED" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE"   "LEPREL1 MUTATED" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"LEPREL1 WILD-TYPE"   "LEPREL1 MUTATED" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
  "LEPREL1 MUTATED" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE"   "LEPREL1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
  "LEPREL1 MUTATED" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"LEPREL1 WILD-TYPE"   "LEPREL1 MUTATED" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "LEPREL1 MUTATED" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "LEPREL1 MUTATED" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE"   "LEPREL1 MUTATED" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"LEPREL1 WILD-TYPE"   "LEPREL1 MUTATED" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
  "LEPREL1 MUTATED" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE"   "LEPREL1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
  "LEPREL1 MUTATED" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"LEPREL1 WILD-TYPE"   "LEPREL1 MUTATED" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "LEPREL1 MUTATED" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "LEPREL1 MUTATED" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
[1] "hr=" "1.3"
D215V2, continuous
D215V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  LEPREL1 MUTATED      8    2
  LEPREL1 WILD-TYPE  146   66
        clus
vv       LEPREL1 MUTATED LEPREL1 WILD-TYPE
  COLON                8               146
  RECTUM               2                66
D215V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  LEPREL1 MUTATED      5    5
  LEPREL1 WILD-TYPE  112  102
        clus
vv       LEPREL1 MUTATED LEPREL1 WILD-TYPE
  FEMALE               5               102
  MALE                 5               112
D215V5, multiclass
                                clus
vv                               LEPREL1 MUTATED LEPREL1 WILD-TYPE
  COLON ADENOCARCINOMA                         6               122
  COLON MUCINOUS ADENOCARCINOMA                2                22
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D215V6, multiclass
    clus
vv   LEPREL1 MUTATED LEPREL1 WILD-TYPE
  T1               0                 9
  T2               3                44
  T3               4               146
  T4               2                15
D215V7, multiclass
    clus
vv   LEPREL1 MUTATED LEPREL1 WILD-TYPE
  N0              10               124
  N1               0                44
  N2               0                46
D215V8, multiclass
     clus
vv    LEPREL1 MUTATED LEPREL1 WILD-TYPE
  M0                9               180
  M1                0                31
  M1A               0                 1
D215V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  LEPREL1 MUTATED      9    1
  LEPREL1 WILD-TYPE  207    7
     clus
vv    LEPREL1 MUTATED LEPREL1 WILD-TYPE
  NO                1                 7
  YES               9               207

Clustering(216) Variable = INHBA MUTATION ANALYSIS
D216V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
[1] "hr=" "1.1"
D216V2, continuous
D216V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  INHBA MUTATED      7    2
  INHBA WILD-TYPE  147   66
        clus
vv       INHBA MUTATED INHBA WILD-TYPE
  COLON              7             147
  RECTUM             2              66
D216V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  INHBA MUTATED      6    3
  INHBA WILD-TYPE  111  104
        clus
vv       INHBA MUTATED INHBA WILD-TYPE
  FEMALE             3             104
  MALE               6             111
D216V5, multiclass
                                clus
vv                               INHBA MUTATED INHBA WILD-TYPE
  COLON ADENOCARCINOMA                       2             126
  COLON MUCINOUS ADENOCARCINOMA              5              19
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D216V6, multiclass
    clus
vv   INHBA MUTATED INHBA WILD-TYPE
  T1             1               8
  T2             1              46
  T3             5             145
  T4             2              15
D216V7, multiclass
    clus
vv   INHBA MUTATED INHBA WILD-TYPE
  N0             5             129
  N1             2              42
  N2             2              44
D216V8, multiclass
     clus
vv    INHBA MUTATED INHBA WILD-TYPE
  M0              9             180
  M1              0              31
  M1A             0               1
D216V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  INHBA MUTATED      9    0
  INHBA WILD-TYPE  207    8
     clus
vv    INHBA MUTATED INHBA WILD-TYPE
  NO              0               8
  YES             9             207

Clustering(217) Variable = DLC1 MUTATION ANALYSIS
D217V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" "DLC1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED"   "DLC1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
  "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DLC1 WILD-TYPE"   "DLC1 MUTATED"   "DLC1 MUTATED" "DLC1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DLC1 WILD-TYPE"   "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" "DLC1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DLC1 WILD-TYPE"   "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" "DLC1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED"   "DLC1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
  "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DLC1 WILD-TYPE"   "DLC1 MUTATED"   "DLC1 MUTATED" "DLC1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DLC1 WILD-TYPE"   "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" "DLC1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DLC1 WILD-TYPE"   "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" "DLC1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED"   "DLC1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
  "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DLC1 WILD-TYPE"   "DLC1 MUTATED"   "DLC1 MUTATED" "DLC1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DLC1 WILD-TYPE"   "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" "DLC1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DLC1 WILD-TYPE"   "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
[1] "hr=" "1.2"
D217V2, continuous
D217V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DLC1 MUTATED     16    4
  DLC1 WILD-TYPE  138   64
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  COLON            16            138
  RECTUM            4             64
D217V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DLC1 MUTATED     10   10
  DLC1 WILD-TYPE  107   97
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  FEMALE           10             97
  MALE             10            107
D217V5, multiclass
                                clus
vv                               DLC1 MUTATED DLC1 WILD-TYPE
  COLON ADENOCARCINOMA                     12            116
  COLON MUCINOUS ADENOCARCINOMA             4             20
  RECTAL ADENOCARCINOMA                     3             54
  RECTAL MUCINOUS ADENOCARCINOMA            1              7
D217V6, multiclass
    clus
vv   DLC1 MUTATED DLC1 WILD-TYPE
  T1            1              8
  T2            4             43
  T3           13            137
  T4            2             15
D217V7, multiclass
    clus
vv   DLC1 MUTATED DLC1 WILD-TYPE
  N0           12            122
  N1            2             42
  N2            6             40
D217V8, multiclass
     clus
vv    DLC1 MUTATED DLC1 WILD-TYPE
  M0            18            171
  M1             1             30
  M1A            0              1
D217V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DLC1 MUTATED     20    0
  DLC1 WILD-TYPE  196    8
     clus
vv    DLC1 MUTATED DLC1 WILD-TYPE
  NO             0              8
  YES           20            196

Clustering(218) Variable = ZEB2 MUTATION ANALYSIS
D218V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
[1] "hr=" "2"  
D218V2, continuous
D218V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZEB2 MUTATED     11    4
  ZEB2 WILD-TYPE  143   64
        clus
vv       ZEB2 MUTATED ZEB2 WILD-TYPE
  COLON            11            143
  RECTUM            4             64
D218V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZEB2 MUTATED      9    6
  ZEB2 WILD-TYPE  108  101
        clus
vv       ZEB2 MUTATED ZEB2 WILD-TYPE
  FEMALE            6            101
  MALE              9            108
D218V5, multiclass
                                clus
vv                               ZEB2 MUTATED ZEB2 WILD-TYPE
  COLON ADENOCARCINOMA                      9            119
  COLON MUCINOUS ADENOCARCINOMA             2             22
  RECTAL ADENOCARCINOMA                     4             53
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D218V6, multiclass
    clus
vv   ZEB2 MUTATED ZEB2 WILD-TYPE
  T1            1              8
  T2            4             43
  T3            8            142
  T4            2             15
D218V7, multiclass
    clus
vv   ZEB2 MUTATED ZEB2 WILD-TYPE
  N0           11            123
  N1            1             43
  N2            3             43
D218V8, multiclass
     clus
vv    ZEB2 MUTATED ZEB2 WILD-TYPE
  M0            14            175
  M1             1             30
  M1A            0              1
D218V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZEB2 MUTATED     15    0
  ZEB2 WILD-TYPE  201    8
     clus
vv    ZEB2 MUTATED ZEB2 WILD-TYPE
  NO             0              8
  YES           15            201

Clustering(219) Variable = OLFM3 MUTATION ANALYSIS
D219V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE"   "OLFM3 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE"   "OLFM3 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OLFM3 MUTATED" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE"   "OLFM3 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE"   "OLFM3 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE"   "OLFM3 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OLFM3 MUTATED" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE"   "OLFM3 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE"   "OLFM3 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE"   "OLFM3 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OLFM3 MUTATED" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE"   "OLFM3 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
[1] "hr=" "1.4"
D219V2, continuous
D219V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OLFM3 MUTATED      5    2
  OLFM3 WILD-TYPE  149   66
        clus
vv       OLFM3 MUTATED OLFM3 WILD-TYPE
  COLON              5             149
  RECTUM             2              66
D219V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OLFM3 MUTATED      4    3
  OLFM3 WILD-TYPE  113  104
        clus
vv       OLFM3 MUTATED OLFM3 WILD-TYPE
  FEMALE             3             104
  MALE               4             113
D219V5, multiclass
                                clus
vv                               OLFM3 MUTATED OLFM3 WILD-TYPE
  COLON ADENOCARCINOMA                       2             126
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D219V6, multiclass
    clus
vv   OLFM3 MUTATED OLFM3 WILD-TYPE
  T1             0               9
  T2             2              45
  T3             5             145
  T4             0              17
D219V7, multiclass
    clus
vv   OLFM3 MUTATED OLFM3 WILD-TYPE
  N0             5             129
  N1             1              43
  N2             1              45
D219V8, multiclass
     clus
vv    OLFM3 MUTATED OLFM3 WILD-TYPE
  M0              7             182
  M1              0              31
  M1A             0               1
D219V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OLFM3 MUTATED      7    0
  OLFM3 WILD-TYPE  209    8
     clus
vv    OLFM3 MUTATED OLFM3 WILD-TYPE
  NO              0               8
  YES             7             209

Clustering(220) Variable = ZEB1 MUTATION ANALYSIS
D220V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ZEB1 WILD-TYPE"   "ZEB1 MUTATED" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE"   "ZEB1 MUTATED" "ZEB1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE"   "ZEB1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ZEB1 WILD-TYPE"   "ZEB1 MUTATED"   "ZEB1 MUTATED" "ZEB1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ZEB1 WILD-TYPE"   "ZEB1 MUTATED" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "ZEB1 MUTATED" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "ZEB1 MUTATED" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ZEB1 WILD-TYPE"   "ZEB1 MUTATED" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE"   "ZEB1 MUTATED" "ZEB1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE"   "ZEB1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ZEB1 WILD-TYPE"   "ZEB1 MUTATED"   "ZEB1 MUTATED" "ZEB1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ZEB1 WILD-TYPE"   "ZEB1 MUTATED" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "ZEB1 MUTATED" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "ZEB1 MUTATED" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ZEB1 WILD-TYPE"   "ZEB1 MUTATED" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE"   "ZEB1 MUTATED" "ZEB1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE"   "ZEB1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ZEB1 WILD-TYPE"   "ZEB1 MUTATED"   "ZEB1 MUTATED" "ZEB1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ZEB1 WILD-TYPE"   "ZEB1 MUTATED" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "ZEB1 MUTATED" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "ZEB1 MUTATED" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
[1] "hr="     "7.5e+07"
D220V2, continuous
D220V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZEB1 MUTATED      9    2
  ZEB1 WILD-TYPE  145   66
        clus
vv       ZEB1 MUTATED ZEB1 WILD-TYPE
  COLON             9            145
  RECTUM            2             66
D220V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZEB1 MUTATED      7    4
  ZEB1 WILD-TYPE  110  103
        clus
vv       ZEB1 MUTATED ZEB1 WILD-TYPE
  FEMALE            4            103
  MALE              7            110
D220V5, multiclass
                                clus
vv                               ZEB1 MUTATED ZEB1 WILD-TYPE
  COLON ADENOCARCINOMA                      6            122
  COLON MUCINOUS ADENOCARCINOMA             3             21
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D220V6, multiclass
    clus
vv   ZEB1 MUTATED ZEB1 WILD-TYPE
  T1            0              9
  T2            1             46
  T3            9            141
  T4            1             16
D220V7, multiclass
    clus
vv   ZEB1 MUTATED ZEB1 WILD-TYPE
  N0            5            129
  N1            3             41
  N2            3             43
D220V8, multiclass
     clus
vv    ZEB1 MUTATED ZEB1 WILD-TYPE
  M0            10            179
  M1             0             31
  M1A            0              1
D220V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZEB1 MUTATED     11    0
  ZEB1 WILD-TYPE  205    8
     clus
vv    ZEB1 MUTATED ZEB1 WILD-TYPE
  NO             0              8
  YES           11            205

Clustering(221) Variable = LOXL2 MUTATION ANALYSIS
D221V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE"   "LOXL2 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE"   "LOXL2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
  "LOXL2 MUTATED" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE"   "LOXL2 MUTATED" "LOXL2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LOXL2 MUTATED" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "LOXL2 MUTATED" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE"   "LOXL2 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE"   "LOXL2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
  "LOXL2 MUTATED" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE"   "LOXL2 MUTATED" "LOXL2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LOXL2 MUTATED" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "LOXL2 MUTATED" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE"   "LOXL2 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE"   "LOXL2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
  "LOXL2 MUTATED" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE"   "LOXL2 MUTATED" "LOXL2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LOXL2 MUTATED" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "LOXL2 MUTATED" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D221V2, continuous
D221V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LOXL2 MUTATED      6    3
  LOXL2 WILD-TYPE  148   65
        clus
vv       LOXL2 MUTATED LOXL2 WILD-TYPE
  COLON              6             148
  RECTUM             3              65
D221V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LOXL2 MUTATED      7    2
  LOXL2 WILD-TYPE  110  105
        clus
vv       LOXL2 MUTATED LOXL2 WILD-TYPE
  FEMALE             2             105
  MALE               7             110
D221V5, multiclass
                                clus
vv                               LOXL2 MUTATED LOXL2 WILD-TYPE
  COLON ADENOCARCINOMA                       5             123
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D221V6, multiclass
    clus
vv   LOXL2 MUTATED LOXL2 WILD-TYPE
  T1             0               9
  T2             3              44
  T3             6             144
  T4             0              17
D221V7, multiclass
    clus
vv   LOXL2 MUTATED LOXL2 WILD-TYPE
  N0             6             128
  N1             1              43
  N2             2              44
D221V8, multiclass
     clus
vv    LOXL2 MUTATED LOXL2 WILD-TYPE
  M0              8             181
  M1              0              31
  M1A             0               1
D221V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LOXL2 MUTATED      9    0
  LOXL2 WILD-TYPE  207    8
     clus
vv    LOXL2 MUTATED LOXL2 WILD-TYPE
  NO              0               8
  YES             9             207

Clustering(222) Variable = PAPPA MUTATION ANALYSIS
D222V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE"   "PAPPA MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE"   "PAPPA MUTATED" "PAPPA WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "PAPPA MUTATED" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PAPPA WILD-TYPE"   "PAPPA MUTATED" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PAPPA MUTATED" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE"   "PAPPA MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "PAPPA MUTATED" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PAPPA MUTATED" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PAPPA WILD-TYPE"   "PAPPA MUTATED" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "PAPPA MUTATED" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE"   "PAPPA MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE"   "PAPPA MUTATED" "PAPPA WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "PAPPA MUTATED" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PAPPA WILD-TYPE"   "PAPPA MUTATED" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PAPPA MUTATED" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE"   "PAPPA MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "PAPPA MUTATED" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PAPPA MUTATED" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PAPPA WILD-TYPE"   "PAPPA MUTATED" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "PAPPA MUTATED" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE"   "PAPPA MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE"   "PAPPA MUTATED" "PAPPA WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "PAPPA MUTATED" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PAPPA WILD-TYPE"   "PAPPA MUTATED" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PAPPA MUTATED" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE"   "PAPPA MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "PAPPA MUTATED" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PAPPA MUTATED" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PAPPA WILD-TYPE"   "PAPPA MUTATED" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "PAPPA MUTATED" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" "PAPPA WILD-TYPE" 
[1] "hr=" "1.1"
D222V2, continuous
D222V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PAPPA MUTATED     13    4
  PAPPA WILD-TYPE  141   64
        clus
vv       PAPPA MUTATED PAPPA WILD-TYPE
  COLON             13             141
  RECTUM             4              64
D222V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PAPPA MUTATED      8    9
  PAPPA WILD-TYPE  109   98
        clus
vv       PAPPA MUTATED PAPPA WILD-TYPE
  FEMALE             9              98
  MALE               8             109
D222V5, multiclass
                                clus
vv                               PAPPA MUTATED PAPPA WILD-TYPE
  COLON ADENOCARCINOMA                      10             118
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D222V6, multiclass
    clus
vv   PAPPA MUTATED PAPPA WILD-TYPE
  T1             1               8
  T2             2              45
  T3            11             139
  T4             3              14
D222V7, multiclass
    clus
vv   PAPPA MUTATED PAPPA WILD-TYPE
  N0            12             122
  N1             4              40
  N2             1              45
D222V8, multiclass
     clus
vv    PAPPA MUTATED PAPPA WILD-TYPE
  M0             16             173
  M1              1              30
  M1A             0               1
D222V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PAPPA MUTATED     17    0
  PAPPA WILD-TYPE  199    8
     clus
vv    PAPPA MUTATED PAPPA WILD-TYPE
  NO              0               8
  YES            17             199

Clustering(223) Variable = TNR MUTATION ANALYSIS
D223V1, survival
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED"   "TNR MUTATED" "TNR WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED" "TNR WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED"   "TNR MUTATED" "TNR WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED" "TNR WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED"   "TNR MUTATED" "TNR WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED" "TNR WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED" 
[1] "hr=" "1.1"
D223V2, continuous
D223V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  TNR MUTATED     15    2
  TNR WILD-TYPE  139   66
        clus
vv       TNR MUTATED TNR WILD-TYPE
  COLON           15           139
  RECTUM           2            66
D223V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  TNR MUTATED     11    6
  TNR WILD-TYPE  106  101
        clus
vv       TNR MUTATED TNR WILD-TYPE
  FEMALE           6           101
  MALE            11           106
D223V5, multiclass
                                clus
vv                               TNR MUTATED TNR WILD-TYPE
  COLON ADENOCARCINOMA                    11           117
  COLON MUCINOUS ADENOCARCINOMA            3            21
  RECTAL ADENOCARCINOMA                    2            55
  RECTAL MUCINOUS ADENOCARCINOMA           0             8
D223V6, multiclass
    clus
vv   TNR MUTATED TNR WILD-TYPE
  T1           0             9
  T2           6            41
  T3           8           142
  T4           3            14
D223V7, multiclass
    clus
vv   TNR MUTATED TNR WILD-TYPE
  N0          15           119
  N1           1            43
  N2           1            45
D223V8, multiclass
     clus
vv    TNR MUTATED TNR WILD-TYPE
  M0           15           174
  M1            1            30
  M1A           0             1
D223V9, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  TNR MUTATED     17    0
  TNR WILD-TYPE  199    8
     clus
vv    TNR MUTATED TNR WILD-TYPE
  NO            0             8
  YES          17           199

Clustering(224) Variable = FZD3 MUTATION ANALYSIS
D224V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE"   "FZD3 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE"   "FZD3 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "FZD3 MUTATED" "FZD3 WILD-TYPE"   "FZD3 MUTATED" "FZD3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"FZD3 WILD-TYPE"   "FZD3 MUTATED" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "FZD3 MUTATED" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "FZD3 MUTATED" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "FZD3 MUTATED" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE"   "FZD3 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE"   "FZD3 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "FZD3 MUTATED" "FZD3 WILD-TYPE"   "FZD3 MUTATED" "FZD3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"FZD3 WILD-TYPE"   "FZD3 MUTATED" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "FZD3 MUTATED" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "FZD3 MUTATED" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "FZD3 MUTATED" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE"   "FZD3 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE"   "FZD3 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "FZD3 MUTATED" "FZD3 WILD-TYPE"   "FZD3 MUTATED" "FZD3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"FZD3 WILD-TYPE"   "FZD3 MUTATED" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "FZD3 MUTATED" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "FZD3 MUTATED" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "FZD3 MUTATED" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
[1] "hr=" "1.1"
D224V2, continuous
D224V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FZD3 MUTATED      9    1
  FZD3 WILD-TYPE  145   67
        clus
vv       FZD3 MUTATED FZD3 WILD-TYPE
  COLON             9            145
  RECTUM            1             67
D224V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FZD3 MUTATED      5    5
  FZD3 WILD-TYPE  112  102
        clus
vv       FZD3 MUTATED FZD3 WILD-TYPE
  FEMALE            5            102
  MALE              5            112
D224V5, multiclass
                                clus
vv                               FZD3 MUTATED FZD3 WILD-TYPE
  COLON ADENOCARCINOMA                      6            122
  COLON MUCINOUS ADENOCARCINOMA             3             21
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D224V6, multiclass
    clus
vv   FZD3 MUTATED FZD3 WILD-TYPE
  T1            0              9
  T2            2             45
  T3            3            147
  T4            4             13
D224V7, multiclass
    clus
vv   FZD3 MUTATED FZD3 WILD-TYPE
  N0            9            125
  N1            1             43
  N2            0             46
D224V8, multiclass
     clus
vv    FZD3 MUTATED FZD3 WILD-TYPE
  M0             9            180
  M1             0             31
  M1A            0              1
D224V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FZD3 MUTATED      9    1
  FZD3 WILD-TYPE  207    7
     clus
vv    FZD3 MUTATED FZD3 WILD-TYPE
  NO             1              7
  YES            9            207

Clustering(225) Variable = TMPRSS13 MUTATION ANALYSIS
D225V1, survival
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
  "TMPRSS13 MUTATED" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
  "TMPRSS13 MUTATED" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
  "TMPRSS13 MUTATED" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
  "TMPRSS13 MUTATED" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
  "TMPRSS13 MUTATED" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
  "TMPRSS13 MUTATED" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
[1] "Remove cluster labels:" "TMPRSS13 MUTATED"      
clus
  TMPRSS13 MUTATED TMPRSS13 WILD-TYPE 
                 2                118 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3811         TCGA-AA-3818         TCGA-AA-3837 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3846 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3848         TCGA-AA-3854         TCGA-AA-3877 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3939         TCGA-AA-3941         TCGA-AA-3947 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3949         TCGA-AA-3952         TCGA-AA-3966 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3975         TCGA-AA-3977         TCGA-AA-3986 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01P         TCGA-AA-A01Q 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01R         TCGA-AA-A01S         TCGA-AA-A01T 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01V         TCGA-AA-A01X         TCGA-AA-A01Z 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A024         TCGA-AA-A029         TCGA-AA-A02F 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A02H         TCGA-AA-A02J         TCGA-AA-A02O 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AA-A02Y         TCGA-AA-A03F 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A03J         TCGA-AY-4070         TCGA-AY-4071 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AF-2689         TCGA-AF-2691         TCGA-AF-2692 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AF-3400         TCGA-AF-3913         TCGA-AG-3581 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3587 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3599         TCGA-AG-3726         TCGA-AG-3727 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3887         TCGA-AG-3893 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3999         TCGA-AG-4001 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-A002 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A008         TCGA-AG-A00C         TCGA-AG-A00H 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A00Y         TCGA-AG-A011         TCGA-AG-A014 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A015         TCGA-AG-A016         TCGA-AG-A01L 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A01W         TCGA-AG-A01Y         TCGA-AG-A020 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A025         TCGA-AG-A026         TCGA-AG-A02G 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A02N         TCGA-AG-A02X         TCGA-AG-A032 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A036 
"TMPRSS13 WILD-TYPE" 
D225V2, continuous
D225V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  TMPRSS13 MUTATED      3    1
  TMPRSS13 WILD-TYPE  151   67
        clus
vv       TMPRSS13 MUTATED TMPRSS13 WILD-TYPE
  COLON                 3                151
  RECTUM                1                 67
D225V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  TMPRSS13 MUTATED      1    3
  TMPRSS13 WILD-TYPE  116  104
        clus
vv       TMPRSS13 MUTATED TMPRSS13 WILD-TYPE
  FEMALE                3                104
  MALE                  1                116
D225V5, multiclass
                                clus
vv                               TMPRSS13 MUTATED TMPRSS13 WILD-TYPE
  COLON ADENOCARCINOMA                          3                125
  COLON MUCINOUS ADENOCARCINOMA                 0                 24
  RECTAL ADENOCARCINOMA                         1                 56
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
D225V6, multiclass
    clus
vv   TMPRSS13 MUTATED TMPRSS13 WILD-TYPE
  T1                1                  8
  T2                0                 47
  T3                3                147
  T4                0                 17
D225V7, multiclass
    clus
vv   TMPRSS13 MUTATED TMPRSS13 WILD-TYPE
  N0                4                130
  N1                0                 44
  N2                0                 46
D225V8, multiclass
     clus
vv    TMPRSS13 MUTATED TMPRSS13 WILD-TYPE
  M0                 4                185
  M1                 0                 31
  M1A                0                  1
D225V9, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  TMPRSS13 MUTATED      4    0
  TMPRSS13 WILD-TYPE  212    8
     clus
vv    TMPRSS13 MUTATED TMPRSS13 WILD-TYPE
  NO                 0                  8
  YES                4                212

Clustering(226) Variable = ACSS3 MUTATION ANALYSIS
D226V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE"   "ACSS3 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE"   "ACSS3 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ACSS3 WILD-TYPE"   "ACSS3 MUTATED" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE"   "ACSS3 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE"   "ACSS3 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ACSS3 WILD-TYPE"   "ACSS3 MUTATED" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE"   "ACSS3 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE"   "ACSS3 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ACSS3 WILD-TYPE"   "ACSS3 MUTATED" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
[1] "hr=" "5.2"
D226V2, continuous
D226V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ACSS3 MUTATED      8    0
  ACSS3 WILD-TYPE  146   68
        clus
vv       ACSS3 MUTATED ACSS3 WILD-TYPE
  COLON              8             146
  RECTUM             0              68
D226V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ACSS3 MUTATED      2    6
  ACSS3 WILD-TYPE  115  101
        clus
vv       ACSS3 MUTATED ACSS3 WILD-TYPE
  FEMALE             6             101
  MALE               2             115
D226V5, multiclass
                                clus
vv                               ACSS3 MUTATED ACSS3 WILD-TYPE
  COLON ADENOCARCINOMA                       5             123
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      0              57
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D226V6, multiclass
    clus
vv   ACSS3 MUTATED ACSS3 WILD-TYPE
  T1             0               9
  T2             0              47
  T3             5             145
  T4             2              15
D226V7, multiclass
    clus
vv   ACSS3 MUTATED ACSS3 WILD-TYPE
  N0             5             129
  N1             1              43
  N2             2              44
D226V8, multiclass
     clus
vv    ACSS3 MUTATED ACSS3 WILD-TYPE
  M0              7             182
  M1              1              30
  M1A             0               1
D226V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ACSS3 MUTATED      7    1
  ACSS3 WILD-TYPE  209    7
     clus
vv    ACSS3 MUTATED ACSS3 WILD-TYPE
  NO              1               7
  YES             7             209

Clustering(227) Variable = ZNF804B MUTATION ANALYSIS
D227V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
[1] "hr=" "2.7"
D227V2, continuous
D227V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZNF804B MUTATED      9    2
  ZNF804B WILD-TYPE  145   66
        clus
vv       ZNF804B MUTATED ZNF804B WILD-TYPE
  COLON                9               145
  RECTUM               2                66
D227V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZNF804B MUTATED      6    6
  ZNF804B WILD-TYPE  111  101
        clus
vv       ZNF804B MUTATED ZNF804B WILD-TYPE
  FEMALE               6               101
  MALE                 6               111
D227V5, multiclass
                                clus
vv                               ZNF804B MUTATED ZNF804B WILD-TYPE
  COLON ADENOCARCINOMA                         5               123
  COLON MUCINOUS ADENOCARCINOMA                3                21
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D227V6, multiclass
    clus
vv   ZNF804B MUTATED ZNF804B WILD-TYPE
  T1               1                 8
  T2               3                44
  T3               7               143
  T4               1                16
D227V7, multiclass
    clus
vv   ZNF804B MUTATED ZNF804B WILD-TYPE
  N0              10               124
  N1               0                44
  N2               2                44
D227V8, multiclass
     clus
vv    ZNF804B MUTATED ZNF804B WILD-TYPE
  M0               11               178
  M1                0                31
  M1A               0                 1
D227V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZNF804B MUTATED     12    0
  ZNF804B WILD-TYPE  204    8
     clus
vv    ZNF804B MUTATED ZNF804B WILD-TYPE
  NO                0                 8
  YES              12               204

Clustering(228) Variable = DPYD MUTATION ANALYSIS
D228V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE"   "DPYD MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DPYD WILD-TYPE"   "DPYD MUTATED" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DPYD WILD-TYPE"   "DPYD MUTATED" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE"   "DPYD MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DPYD WILD-TYPE"   "DPYD MUTATED" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "DPYD MUTATED" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DPYD WILD-TYPE"   "DPYD MUTATED" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE"   "DPYD MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DPYD WILD-TYPE"   "DPYD MUTATED" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DPYD WILD-TYPE"   "DPYD MUTATED" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE"   "DPYD MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DPYD WILD-TYPE"   "DPYD MUTATED" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "DPYD MUTATED" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DPYD WILD-TYPE"   "DPYD MUTATED" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE"   "DPYD MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DPYD WILD-TYPE"   "DPYD MUTATED" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DPYD WILD-TYPE"   "DPYD MUTATED" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE"   "DPYD MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DPYD WILD-TYPE"   "DPYD MUTATED" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "DPYD MUTATED" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DPYD WILD-TYPE"   "DPYD MUTATED" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
[1] "hr=" "2"  
D228V2, continuous
D228V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DPYD MUTATED      7    4
  DPYD WILD-TYPE  147   64
        clus
vv       DPYD MUTATED DPYD WILD-TYPE
  COLON             7            147
  RECTUM            4             64
D228V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DPYD MUTATED      2   10
  DPYD WILD-TYPE  115   97
        clus
vv       DPYD MUTATED DPYD WILD-TYPE
  FEMALE           10             97
  MALE              2            115
D228V5, multiclass
                                clus
vv                               DPYD MUTATED DPYD WILD-TYPE
  COLON ADENOCARCINOMA                      2            126
  COLON MUCINOUS ADENOCARCINOMA             4             20
  RECTAL ADENOCARCINOMA                     4             53
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D228V6, multiclass
    clus
vv   DPYD MUTATED DPYD WILD-TYPE
  T1            1              8
  T2            1             46
  T3            8            142
  T4            1             16
D228V7, multiclass
    clus
vv   DPYD MUTATED DPYD WILD-TYPE
  N0            8            126
  N1            2             42
  N2            2             44
D228V8, multiclass
     clus
vv    DPYD MUTATED DPYD WILD-TYPE
  M0            12            177
  M1             0             31
  M1A            0              1
D228V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DPYD MUTATED     11    1
  DPYD WILD-TYPE  205    7
     clus
vv    DPYD MUTATED DPYD WILD-TYPE
  NO             1              7
  YES           11            205

Clustering(229) Variable = OLFML1 MUTATION ANALYSIS
D229V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OLFML1 WILD-TYPE"   "OLFML1 MUTATED"   "OLFML1 MUTATED" "OLFML1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OLFML1 WILD-TYPE"   "OLFML1 MUTATED" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OLFML1 MUTATED" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OLFML1 WILD-TYPE"   "OLFML1 MUTATED"   "OLFML1 MUTATED" "OLFML1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OLFML1 WILD-TYPE"   "OLFML1 MUTATED" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OLFML1 MUTATED" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OLFML1 WILD-TYPE"   "OLFML1 MUTATED"   "OLFML1 MUTATED" "OLFML1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OLFML1 WILD-TYPE"   "OLFML1 MUTATED" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OLFML1 MUTATED" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
[1] "hr="     "9300000"
D229V2, continuous
D229V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OLFML1 MUTATED      7    0
  OLFML1 WILD-TYPE  147   68
        clus
vv       OLFML1 MUTATED OLFML1 WILD-TYPE
  COLON               7              147
  RECTUM              0               68
D229V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OLFML1 MUTATED      2    5
  OLFML1 WILD-TYPE  115  102
        clus
vv       OLFML1 MUTATED OLFML1 WILD-TYPE
  FEMALE              5              102
  MALE                2              115
D229V5, multiclass
                                clus
vv                               OLFML1 MUTATED OLFML1 WILD-TYPE
  COLON ADENOCARCINOMA                        6              122
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       0               57
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D229V6, multiclass
    clus
vv   OLFML1 MUTATED OLFML1 WILD-TYPE
  T1              1                8
  T2              0               47
  T3              5              145
  T4              1               16
D229V7, multiclass
    clus
vv   OLFML1 MUTATED OLFML1 WILD-TYPE
  N0              7              127
  N1              0               44
  N2              0               46
D229V8, multiclass
     clus
vv    OLFML1 MUTATED OLFML1 WILD-TYPE
  M0               7              182
  M1               0               31
  M1A              0                1
D229V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OLFML1 MUTATED      7    0
  OLFML1 WILD-TYPE  209    8
     clus
vv    OLFML1 MUTATED OLFML1 WILD-TYPE
  NO               0                8
  YES              7              209

Clustering(230) Variable = PDZRN4 MUTATION ANALYSIS
D230V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
[1] "hr=" "1.3"
D230V2, continuous
D230V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PDZRN4 MUTATED     12    1
  PDZRN4 WILD-TYPE  142   67
        clus
vv       PDZRN4 MUTATED PDZRN4 WILD-TYPE
  COLON              12              142
  RECTUM              1               67
D230V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PDZRN4 MUTATED      5    8
  PDZRN4 WILD-TYPE  112   99
        clus
vv       PDZRN4 MUTATED PDZRN4 WILD-TYPE
  FEMALE              8               99
  MALE                5              112
D230V5, multiclass
                                clus
vv                               PDZRN4 MUTATED PDZRN4 WILD-TYPE
  COLON ADENOCARCINOMA                        6              122
  COLON MUCINOUS ADENOCARCINOMA               6               18
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D230V6, multiclass
    clus
vv   PDZRN4 MUTATED PDZRN4 WILD-TYPE
  T1              0                9
  T2              3               44
  T3              7              143
  T4              3               14
D230V7, multiclass
    clus
vv   PDZRN4 MUTATED PDZRN4 WILD-TYPE
  N0              9              125
  N1              3               41
  N2              1               45
D230V8, multiclass
     clus
vv    PDZRN4 MUTATED PDZRN4 WILD-TYPE
  M0              12              177
  M1               1               30
  M1A              0                1
D230V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PDZRN4 MUTATED     13    0
  PDZRN4 WILD-TYPE  203    8
     clus
vv    PDZRN4 MUTATED PDZRN4 WILD-TYPE
  NO               0                8
  YES             13              203

Clustering(231) Variable = FAM116A MUTATION ANALYSIS
D231V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE"   "FAM116A MUTATED" "FAM116A WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE"   "FAM116A MUTATED" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE"   "FAM116A MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "FAM116A MUTATED" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE"   "FAM116A MUTATED" "FAM116A WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE"   "FAM116A MUTATED" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE"   "FAM116A MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "FAM116A MUTATED" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE"   "FAM116A MUTATED" "FAM116A WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE"   "FAM116A MUTATED" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE"   "FAM116A MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "FAM116A MUTATED" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" "FAM116A WILD-TYPE" 
[1] "hr="     "9200000"
D231V2, continuous
D231V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM116A MUTATED      5    1
  FAM116A WILD-TYPE  149   67
        clus
vv       FAM116A MUTATED FAM116A WILD-TYPE
  COLON                5               149
  RECTUM               1                67
D231V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM116A MUTATED      5    1
  FAM116A WILD-TYPE  112  106
        clus
vv       FAM116A MUTATED FAM116A WILD-TYPE
  FEMALE               1               106
  MALE                 5               112
D231V5, multiclass
                                clus
vv                               FAM116A MUTATED FAM116A WILD-TYPE
  COLON ADENOCARCINOMA                         4               124
  COLON MUCINOUS ADENOCARCINOMA                1                23
  RECTAL ADENOCARCINOMA                        1                56
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D231V6, multiclass
    clus
vv   FAM116A MUTATED FAM116A WILD-TYPE
  T1               1                 8
  T2               2                45
  T3               3               147
  T4               0                17
D231V7, multiclass
    clus
vv   FAM116A MUTATED FAM116A WILD-TYPE
  N0               5               129
  N1               0                44
  N2               1                45
D231V8, multiclass
     clus
vv    FAM116A MUTATED FAM116A WILD-TYPE
  M0                4               185
  M1                1                30
  M1A               0                 1
D231V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM116A MUTATED      6    0
  FAM116A WILD-TYPE  210    8
     clus
vv    FAM116A MUTATED FAM116A WILD-TYPE
  NO                0                 8
  YES               6               210

Clustering(232) Variable = RBMS3 MUTATION ANALYSIS
D232V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RBMS3 WILD-TYPE"   "RBMS3 MUTATED" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RBMS3 MUTATED" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
  "RBMS3 MUTATED" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RBMS3 WILD-TYPE"   "RBMS3 MUTATED" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RBMS3 MUTATED" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
  "RBMS3 MUTATED" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RBMS3 WILD-TYPE"   "RBMS3 MUTATED" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RBMS3 MUTATED" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
  "RBMS3 MUTATED" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D232V2, continuous
D232V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RBMS3 MUTATED      5    1
  RBMS3 WILD-TYPE  149   67
        clus
vv       RBMS3 MUTATED RBMS3 WILD-TYPE
  COLON              5             149
  RECTUM             1              67
D232V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RBMS3 MUTATED      2    4
  RBMS3 WILD-TYPE  115  103
        clus
vv       RBMS3 MUTATED RBMS3 WILD-TYPE
  FEMALE             4             103
  MALE               2             115
D232V5, multiclass
                                clus
vv                               RBMS3 MUTATED RBMS3 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D232V6, multiclass
    clus
vv   RBMS3 MUTATED RBMS3 WILD-TYPE
  T1             0               9
  T2             1              46
  T3             3             147
  T4             2              15
D232V7, multiclass
    clus
vv   RBMS3 MUTATED RBMS3 WILD-TYPE
  N0             4             130
  N1             1              43
  N2             1              45
D232V8, multiclass
     clus
vv    RBMS3 MUTATED RBMS3 WILD-TYPE
  M0              5             184
  M1              1              30
  M1A             0               1
D232V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RBMS3 MUTATED      6    0
  RBMS3 WILD-TYPE  210    8
     clus
vv    RBMS3 MUTATED RBMS3 WILD-TYPE
  NO              0               8
  YES             6             210

Clustering(233) Variable = SOHLH2 MUTATION ANALYSIS
D233V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE"   "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE"   "SOHLH2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SOHLH2 WILD-TYPE"   "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE"   "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE"   "SOHLH2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SOHLH2 WILD-TYPE"   "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE"   "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE"   "SOHLH2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SOHLH2 WILD-TYPE"   "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
[1] "hr=" "3.1"
D233V2, continuous
D233V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SOHLH2 MUTATED      8    1
  SOHLH2 WILD-TYPE  146   67
        clus
vv       SOHLH2 MUTATED SOHLH2 WILD-TYPE
  COLON               8              146
  RECTUM              1               67
D233V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SOHLH2 MUTATED      5    4
  SOHLH2 WILD-TYPE  112  103
        clus
vv       SOHLH2 MUTATED SOHLH2 WILD-TYPE
  FEMALE              4              103
  MALE                5              112
D233V5, multiclass
                                clus
vv                               SOHLH2 MUTATED SOHLH2 WILD-TYPE
  COLON ADENOCARCINOMA                        7              121
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D233V6, multiclass
    clus
vv   SOHLH2 MUTATED SOHLH2 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              4              146
  T4              3               14
D233V7, multiclass
    clus
vv   SOHLH2 MUTATED SOHLH2 WILD-TYPE
  N0              5              129
  N1              3               41
  N2              1               45
D233V8, multiclass
     clus
vv    SOHLH2 MUTATED SOHLH2 WILD-TYPE
  M0               7              182
  M1               1               30
  M1A              0                1
D233V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SOHLH2 MUTATED      9    0
  SOHLH2 WILD-TYPE  207    8
     clus
vv    SOHLH2 MUTATED SOHLH2 WILD-TYPE
  NO               0                8
  YES              9              207

Clustering(234) Variable = F13A1 MUTATION ANALYSIS
D234V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE"   "F13A1 MUTATED" "F13A1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"F13A1 WILD-TYPE"   "F13A1 MUTATED" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"F13A1 WILD-TYPE"   "F13A1 MUTATED" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "F13A1 MUTATED" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE"   "F13A1 MUTATED" "F13A1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"F13A1 WILD-TYPE"   "F13A1 MUTATED" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"F13A1 WILD-TYPE"   "F13A1 MUTATED" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "F13A1 MUTATED" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE"   "F13A1 MUTATED" "F13A1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"F13A1 WILD-TYPE"   "F13A1 MUTATED" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"F13A1 WILD-TYPE"   "F13A1 MUTATED" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "F13A1 MUTATED" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
[1] "hr=" "3.3"
D234V2, continuous
D234V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  F13A1 MUTATED      8    2
  F13A1 WILD-TYPE  146   66
        clus
vv       F13A1 MUTATED F13A1 WILD-TYPE
  COLON              8             146
  RECTUM             2              66
D234V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  F13A1 MUTATED      5    5
  F13A1 WILD-TYPE  112  102
        clus
vv       F13A1 MUTATED F13A1 WILD-TYPE
  FEMALE             5             102
  MALE               5             112
D234V5, multiclass
                                clus
vv                               F13A1 MUTATED F13A1 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D234V6, multiclass
    clus
vv   F13A1 MUTATED F13A1 WILD-TYPE
  T1             0               9
  T2             0              47
  T3             7             143
  T4             3              14
D234V7, multiclass
    clus
vv   F13A1 MUTATED F13A1 WILD-TYPE
  N0             7             127
  N1             3              41
  N2             0              46
D234V8, multiclass
     clus
vv    F13A1 MUTATED F13A1 WILD-TYPE
  M0              9             180
  M1              1              30
  M1A             0               1
D234V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  F13A1 MUTATED     10    0
  F13A1 WILD-TYPE  206    8
     clus
vv    F13A1 MUTATED F13A1 WILD-TYPE
  NO              0               8
  YES            10             206

Clustering(235) Variable = ZNF593 MUTATION ANALYSIS
D235V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF593 WILD-TYPE"   "ZNF593 MUTATED" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF593 WILD-TYPE"   "ZNF593 MUTATED" "ZNF593 WILD-TYPE"   "ZNF593 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF593 WILD-TYPE"   "ZNF593 MUTATED" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF593 WILD-TYPE"   "ZNF593 MUTATED" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF593 WILD-TYPE"   "ZNF593 MUTATED" "ZNF593 WILD-TYPE"   "ZNF593 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF593 WILD-TYPE"   "ZNF593 MUTATED" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF593 WILD-TYPE"   "ZNF593 MUTATED" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF593 WILD-TYPE"   "ZNF593 MUTATED" "ZNF593 WILD-TYPE"   "ZNF593 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF593 WILD-TYPE"   "ZNF593 MUTATED" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D235V2, continuous
D235V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF593 MUTATED      3    1
  ZNF593 WILD-TYPE  151   67
        clus
vv       ZNF593 MUTATED ZNF593 WILD-TYPE
  COLON               3              151
  RECTUM              1               67
D235V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF593 MUTATED      1    3
  ZNF593 WILD-TYPE  116  104
        clus
vv       ZNF593 MUTATED ZNF593 WILD-TYPE
  FEMALE              3              104
  MALE                1              116
D235V5, multiclass
                                clus
vv                               ZNF593 MUTATED ZNF593 WILD-TYPE
  COLON ADENOCARCINOMA                        2              126
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D235V6, multiclass
    clus
vv   ZNF593 MUTATED ZNF593 WILD-TYPE
  T1              1                8
  T2              1               46
  T3              2              148
  T4              0               17
D235V7, multiclass
    clus
vv   ZNF593 MUTATED ZNF593 WILD-TYPE
  N0              4              130
  N1              0               44
  N2              0               46
D235V8, multiclass
     clus
vv    ZNF593 MUTATED ZNF593 WILD-TYPE
  M0               3              186
  M1               0               31
  M1A              0                1
D235V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF593 MUTATED      4    0
  ZNF593 WILD-TYPE  212    8
     clus
vv    ZNF593 MUTATED ZNF593 WILD-TYPE
  NO               0                8
  YES              4              212

Clustering(236) Variable = TRIM55 MUTATION ANALYSIS
D236V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE"   "TRIM55 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
  "TRIM55 MUTATED" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TRIM55 WILD-TYPE"   "TRIM55 MUTATED" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE"   "TRIM55 MUTATED" "TRIM55 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TRIM55 WILD-TYPE"   "TRIM55 MUTATED" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "TRIM55 MUTATED" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE"   "TRIM55 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
  "TRIM55 MUTATED" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TRIM55 WILD-TYPE"   "TRIM55 MUTATED" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE"   "TRIM55 MUTATED" "TRIM55 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TRIM55 WILD-TYPE"   "TRIM55 MUTATED" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "TRIM55 MUTATED" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE"   "TRIM55 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
  "TRIM55 MUTATED" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TRIM55 WILD-TYPE"   "TRIM55 MUTATED" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE"   "TRIM55 MUTATED" "TRIM55 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TRIM55 WILD-TYPE"   "TRIM55 MUTATED" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "TRIM55 MUTATED" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
[1] "hr=" "1.7"
D236V2, continuous
D236V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM55 MUTATED      6    3
  TRIM55 WILD-TYPE  148   65
        clus
vv       TRIM55 MUTATED TRIM55 WILD-TYPE
  COLON               6              148
  RECTUM              3               65
D236V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM55 MUTATED      4    5
  TRIM55 WILD-TYPE  113  102
        clus
vv       TRIM55 MUTATED TRIM55 WILD-TYPE
  FEMALE              5              102
  MALE                4              113
D236V5, multiclass
                                clus
vv                               TRIM55 MUTATED TRIM55 WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              1                7
D236V6, multiclass
    clus
vv   TRIM55 MUTATED TRIM55 WILD-TYPE
  T1              2                7
  T2              1               46
  T3              4              146
  T4              1               16
D236V7, multiclass
    clus
vv   TRIM55 MUTATED TRIM55 WILD-TYPE
  N0              7              127
  N1              0               44
  N2              2               44
D236V8, multiclass
     clus
vv    TRIM55 MUTATED TRIM55 WILD-TYPE
  M0               8              181
  M1               1               30
  M1A              0                1
D236V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM55 MUTATED      7    2
  TRIM55 WILD-TYPE  209    6
     clus
vv    TRIM55 MUTATED TRIM55 WILD-TYPE
  NO               2                6
  YES              7              209

Clustering(237) Variable = RELN MUTATION ANALYSIS
D237V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE"   "RELN MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "RELN MUTATED" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RELN WILD-TYPE" "RELN WILD-TYPE"   "RELN MUTATED" "RELN WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "RELN MUTATED"   "RELN MUTATED" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RELN WILD-TYPE" "RELN WILD-TYPE"   "RELN MUTATED"   "RELN MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE"   "RELN MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"RELN WILD-TYPE"   "RELN MUTATED" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "RELN MUTATED" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"RELN WILD-TYPE"   "RELN MUTATED" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "RELN MUTATED" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE"   "RELN MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "RELN MUTATED" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RELN WILD-TYPE" "RELN WILD-TYPE"   "RELN MUTATED" "RELN WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "RELN MUTATED"   "RELN MUTATED" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RELN WILD-TYPE" "RELN WILD-TYPE"   "RELN MUTATED"   "RELN MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE"   "RELN MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"RELN WILD-TYPE"   "RELN MUTATED" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "RELN MUTATED" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"RELN WILD-TYPE"   "RELN MUTATED" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "RELN MUTATED" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE"   "RELN MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "RELN MUTATED" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RELN WILD-TYPE" "RELN WILD-TYPE"   "RELN MUTATED" "RELN WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "RELN MUTATED"   "RELN MUTATED" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RELN WILD-TYPE" "RELN WILD-TYPE"   "RELN MUTATED"   "RELN MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE"   "RELN MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"RELN WILD-TYPE"   "RELN MUTATED" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "RELN MUTATED" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"RELN WILD-TYPE"   "RELN MUTATED" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "RELN MUTATED" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" "RELN WILD-TYPE" 
[1] "hr=" "3.2"
D237V2, continuous
D237V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RELN MUTATED     18    3
  RELN WILD-TYPE  136   65
        clus
vv       RELN MUTATED RELN WILD-TYPE
  COLON            18            136
  RECTUM            3             65
D237V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RELN MUTATED      7   14
  RELN WILD-TYPE  110   93
        clus
vv       RELN MUTATED RELN WILD-TYPE
  FEMALE           14             93
  MALE              7            110
D237V5, multiclass
                                clus
vv                               RELN MUTATED RELN WILD-TYPE
  COLON ADENOCARCINOMA                     12            116
  COLON MUCINOUS ADENOCARCINOMA             6             18
  RECTAL ADENOCARCINOMA                     3             54
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D237V6, multiclass
    clus
vv   RELN MUTATED RELN WILD-TYPE
  T1            1              8
  T2            2             45
  T3           14            136
  T4            4             13
D237V7, multiclass
    clus
vv   RELN MUTATED RELN WILD-TYPE
  N0           13            121
  N1            3             41
  N2            5             41
D237V8, multiclass
     clus
vv    RELN MUTATED RELN WILD-TYPE
  M0            18            171
  M1             2             29
  M1A            0              1
D237V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RELN MUTATED     20    1
  RELN WILD-TYPE  196    7
     clus
vv    RELN MUTATED RELN WILD-TYPE
  NO             1              7
  YES           20            196

Clustering(238) Variable = PWP1 MUTATION ANALYSIS
D238V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PWP1 WILD-TYPE"   "PWP1 MUTATED" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PWP1 WILD-TYPE"   "PWP1 MUTATED" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "PWP1 MUTATED" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PWP1 WILD-TYPE"   "PWP1 MUTATED" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PWP1 WILD-TYPE"   "PWP1 MUTATED" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "PWP1 MUTATED" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PWP1 WILD-TYPE"   "PWP1 MUTATED" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PWP1 WILD-TYPE"   "PWP1 MUTATED" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "PWP1 MUTATED" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
[1] "hr=" "3.7"
D238V2, continuous
D238V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PWP1 MUTATED      7    1
  PWP1 WILD-TYPE  147   67
        clus
vv       PWP1 MUTATED PWP1 WILD-TYPE
  COLON             7            147
  RECTUM            1             67
D238V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PWP1 MUTATED      6    2
  PWP1 WILD-TYPE  111  105
        clus
vv       PWP1 MUTATED PWP1 WILD-TYPE
  FEMALE            2            105
  MALE              6            111
D238V5, multiclass
                                clus
vv                               PWP1 MUTATED PWP1 WILD-TYPE
  COLON ADENOCARCINOMA                      4            124
  COLON MUCINOUS ADENOCARCINOMA             3             21
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D238V6, multiclass
    clus
vv   PWP1 MUTATED PWP1 WILD-TYPE
  T1            0              9
  T2            3             44
  T3            4            146
  T4            1             16
D238V7, multiclass
    clus
vv   PWP1 MUTATED PWP1 WILD-TYPE
  N0            5            129
  N1            2             42
  N2            1             45
D238V8, multiclass
     clus
vv    PWP1 MUTATED PWP1 WILD-TYPE
  M0             7            182
  M1             1             30
  M1A            0              1
D238V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PWP1 MUTATED      8    0
  PWP1 WILD-TYPE  208    8
     clus
vv    PWP1 MUTATED PWP1 WILD-TYPE
  NO             0              8
  YES            8            208

Clustering(239) Variable = SLAMF8 MUTATION ANALYSIS
D239V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE"   "SLAMF8 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE"   "SLAMF8 MUTATED" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE"   "SLAMF8 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE"   "SLAMF8 MUTATED" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE"   "SLAMF8 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE"   "SLAMF8 MUTATED" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
[1] "Remove cluster labels:" "SLAMF8 MUTATED"        
clus
  SLAMF8 MUTATED SLAMF8 WILD-TYPE 
               2              118 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3986 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A00F       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A01P       TCGA-AA-A01Q       TCGA-AA-A01R 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A01S       TCGA-AA-A01T       TCGA-AA-A01V       TCGA-AA-A01X 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A01Z       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02O       TCGA-AA-A02W 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A02Y       TCGA-AA-A03F       TCGA-AA-A03J       TCGA-AY-4070 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AY-4071       TCGA-AF-2689       TCGA-AF-2691       TCGA-AF-2692 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581       TCGA-AG-3582 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599       TCGA-AG-3726 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887       TCGA-AG-3892 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999       TCGA-AG-4001 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002       TCGA-AG-A008 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A025 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N       TCGA-AG-A02X 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-A032       TCGA-AG-A036 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
D239V2, continuous
D239V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLAMF8 MUTATED      3    0
  SLAMF8 WILD-TYPE  151   68
        clus
vv       SLAMF8 MUTATED SLAMF8 WILD-TYPE
  COLON               3              151
  RECTUM              0               68
D239V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLAMF8 MUTATED      2    1
  SLAMF8 WILD-TYPE  115  106
        clus
vv       SLAMF8 MUTATED SLAMF8 WILD-TYPE
  FEMALE              1              106
  MALE                2              115
D239V5, multiclass
                                clus
vv                               SLAMF8 MUTATED SLAMF8 WILD-TYPE
  COLON ADENOCARCINOMA                        2              126
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       0               57
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D239V6, multiclass
    clus
vv   SLAMF8 MUTATED SLAMF8 WILD-TYPE
  T1              0                9
  T2              1               46
  T3              1              149
  T4              1               16
D239V7, multiclass
    clus
vv   SLAMF8 MUTATED SLAMF8 WILD-TYPE
  N0              2              132
  N1              1               43
  N2              0               46
D239V8, multiclass
[1] "Remove cluster labels:" "SLAMF8 MUTATED"        
clus
  SLAMF8 MUTATED SLAMF8 WILD-TYPE 
               2              219 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3538       TCGA-AA-3542 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548       TCGA-AA-3549 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3556       TCGA-AA-3560       TCGA-AA-3561       TCGA-AA-3562 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3664       TCGA-AA-3666       TCGA-AA-3667       TCGA-AA-3672 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679       TCGA-AA-3680 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685       TCGA-AA-3688 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3695       TCGA-AA-3696 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3818       TCGA-AA-3819       TCGA-AA-3821 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837       TCGA-AA-3842 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846       TCGA-AA-3848 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852       TCGA-AA-3854 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858       TCGA-AA-3860 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3864       TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3870       TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3930       TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3949       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3973 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3975       TCGA-AA-3976       TCGA-AA-3979       TCGA-AA-3980 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3982       TCGA-AA-3984       TCGA-AA-3986       TCGA-AA-3989 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-3994       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00K       TCGA-AA-A00L 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P       TCGA-AA-A01Q 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T       TCGA-AA-A01V 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A022       TCGA-AA-A024 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AF-2689       TCGA-AF-2691 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3574 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-3575       TCGA-AG-3578       TCGA-AG-3580       TCGA-AG-3581 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3584       TCGA-AG-3586 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-3587       TCGA-AG-3593       TCGA-AG-3594       TCGA-AG-3598 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3600       TCGA-AG-3601       TCGA-AG-3602 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-3605       TCGA-AG-3608       TCGA-AG-3609       TCGA-AG-3611 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-3612       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-3881       TCGA-AG-3882       TCGA-AG-3883       TCGA-AG-3887 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-3890       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-3896       TCGA-AG-3898       TCGA-AG-3901       TCGA-AG-3902 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-3909       TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4005 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-4015       TCGA-AG-A002 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" "SLAMF8 WILD-TYPE" 
D239V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLAMF8 MUTATED      3    0
  SLAMF8 WILD-TYPE  213    8
     clus
vv    SLAMF8 MUTATED SLAMF8 WILD-TYPE
  NO               0                8
  YES              3              213

Clustering(240) Variable = ARHGAP28 MUTATION ANALYSIS
D240V1, survival
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
  "ARHGAP28 MUTATED" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
  "ARHGAP28 MUTATED"   "ARHGAP28 MUTATED" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
  "ARHGAP28 MUTATED" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"ARHGAP28 WILD-TYPE"   "ARHGAP28 MUTATED" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"ARHGAP28 WILD-TYPE"   "ARHGAP28 MUTATED" "ARHGAP28 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
  "ARHGAP28 MUTATED" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
  "ARHGAP28 MUTATED"   "ARHGAP28 MUTATED" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
  "ARHGAP28 MUTATED" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"ARHGAP28 WILD-TYPE"   "ARHGAP28 MUTATED" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"ARHGAP28 WILD-TYPE"   "ARHGAP28 MUTATED" "ARHGAP28 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
  "ARHGAP28 MUTATED" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
  "ARHGAP28 MUTATED"   "ARHGAP28 MUTATED" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
  "ARHGAP28 MUTATED" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"ARHGAP28 WILD-TYPE"   "ARHGAP28 MUTATED" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"ARHGAP28 WILD-TYPE"   "ARHGAP28 MUTATED" "ARHGAP28 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" "ARHGAP28 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D240V2, continuous
D240V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ARHGAP28 MUTATED      6    1
  ARHGAP28 WILD-TYPE  148   67
        clus
vv       ARHGAP28 MUTATED ARHGAP28 WILD-TYPE
  COLON                 6                148
  RECTUM                1                 67
D240V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ARHGAP28 MUTATED      3    4
  ARHGAP28 WILD-TYPE  114  103
        clus
vv       ARHGAP28 MUTATED ARHGAP28 WILD-TYPE
  FEMALE                4                103
  MALE                  3                114
D240V5, multiclass
                                clus
vv                               ARHGAP28 MUTATED ARHGAP28 WILD-TYPE
  COLON ADENOCARCINOMA                          3                125
  COLON MUCINOUS ADENOCARCINOMA                 3                 21
  RECTAL ADENOCARCINOMA                         1                 56
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
D240V6, multiclass
    clus
vv   ARHGAP28 MUTATED ARHGAP28 WILD-TYPE
  T1                0                  9
  T2                1                 46
  T3                3                147
  T4                3                 14
D240V7, multiclass
    clus
vv   ARHGAP28 MUTATED ARHGAP28 WILD-TYPE
  N0                5                129
  N1                2                 42
  N2                0                 46
D240V8, multiclass
     clus
vv    ARHGAP28 MUTATED ARHGAP28 WILD-TYPE
  M0                 7                182
  M1                 0                 31
  M1A                0                  1
D240V9, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ARHGAP28 MUTATED      7    0
  ARHGAP28 WILD-TYPE  209    8
     clus
vv    ARHGAP28 MUTATED ARHGAP28 WILD-TYPE
  NO                 0                  8
  YES                7                209

Clustering(241) Variable = SESN3 MUTATION ANALYSIS
D241V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SESN3 WILD-TYPE"   "SESN3 MUTATED" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SESN3 WILD-TYPE"   "SESN3 MUTATED" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "SESN3 MUTATED" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "SESN3 MUTATED" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SESN3 WILD-TYPE"   "SESN3 MUTATED" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SESN3 WILD-TYPE"   "SESN3 MUTATED" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "SESN3 MUTATED" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "SESN3 MUTATED" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SESN3 WILD-TYPE"   "SESN3 MUTATED" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SESN3 WILD-TYPE"   "SESN3 MUTATED" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "SESN3 MUTATED" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "SESN3 MUTATED" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" "SESN3 WILD-TYPE" 
[1] "hr=" "1.3"
D241V2, continuous
D241V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SESN3 MUTATED      4    1
  SESN3 WILD-TYPE  150   67
        clus
vv       SESN3 MUTATED SESN3 WILD-TYPE
  COLON              4             150
  RECTUM             1              67
D241V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SESN3 MUTATED      3    2
  SESN3 WILD-TYPE  114  105
        clus
vv       SESN3 MUTATED SESN3 WILD-TYPE
  FEMALE             2             105
  MALE               3             114
D241V5, multiclass
                                clus
vv                               SESN3 MUTATED SESN3 WILD-TYPE
  COLON ADENOCARCINOMA                       3             125
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D241V6, multiclass
    clus
vv   SESN3 MUTATED SESN3 WILD-TYPE
  T1             0               9
  T2             0              47
  T3             3             147
  T4             2              15
D241V7, multiclass
    clus
vv   SESN3 MUTATED SESN3 WILD-TYPE
  N0             4             130
  N1             0              44
  N2             1              45
D241V8, multiclass
     clus
vv    SESN3 MUTATED SESN3 WILD-TYPE
  M0              5             184
  M1              0              31
  M1A             0               1
D241V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SESN3 MUTATED      5    0
  SESN3 WILD-TYPE  211    8
     clus
vv    SESN3 MUTATED SESN3 WILD-TYPE
  NO              0               8
  YES             5             211

Clustering(242) Variable = RNASE11 MUTATION ANALYSIS
D242V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE"   "RNASE11 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE"   "RNASE11 MUTATED" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "RNASE11 MUTATED" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"RNASE11 WILD-TYPE"   "RNASE11 MUTATED" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE"   "RNASE11 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE"   "RNASE11 MUTATED" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "RNASE11 MUTATED" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"RNASE11 WILD-TYPE"   "RNASE11 MUTATED" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE"   "RNASE11 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE"   "RNASE11 MUTATED" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "RNASE11 MUTATED" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"RNASE11 WILD-TYPE"   "RNASE11 MUTATED" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D242V2, continuous
D242V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  RNASE11 MUTATED      5    0
  RNASE11 WILD-TYPE  149   68
        clus
vv       RNASE11 MUTATED RNASE11 WILD-TYPE
  COLON                5               149
  RECTUM               0                68
D242V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  RNASE11 MUTATED      2    3
  RNASE11 WILD-TYPE  115  104
        clus
vv       RNASE11 MUTATED RNASE11 WILD-TYPE
  FEMALE               3               104
  MALE                 2               115
D242V5, multiclass
                                clus
vv                               RNASE11 MUTATED RNASE11 WILD-TYPE
  COLON ADENOCARCINOMA                         5               123
  COLON MUCINOUS ADENOCARCINOMA                0                24
  RECTAL ADENOCARCINOMA                        0                57
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D242V6, multiclass
    clus
vv   RNASE11 MUTATED RNASE11 WILD-TYPE
  T1               0                 9
  T2               3                44
  T3               1               149
  T4               1                16
D242V7, multiclass
    clus
vv   RNASE11 MUTATED RNASE11 WILD-TYPE
  N0               5               129
  N1               0                44
  N2               0                46
D242V8, multiclass
     clus
vv    RNASE11 MUTATED RNASE11 WILD-TYPE
  M0                4               185
  M1                0                31
  M1A               0                 1
D242V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  RNASE11 MUTATED      5    0
  RNASE11 WILD-TYPE  211    8
     clus
vv    RNASE11 MUTATED RNASE11 WILD-TYPE
  NO                0                 8
  YES               5               211

Clustering(243) Variable = ZNF208 MUTATION ANALYSIS
D243V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE"   "ZNF208 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF208 WILD-TYPE"   "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF208 WILD-TYPE"   "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
  "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE"   "ZNF208 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF208 WILD-TYPE"   "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF208 WILD-TYPE"   "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
  "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE"   "ZNF208 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF208 WILD-TYPE"   "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF208 WILD-TYPE"   "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
  "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
[1] "hr=" "2"  
D243V2, continuous
D243V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF208 MUTATED      8    3
  ZNF208 WILD-TYPE  146   65
        clus
vv       ZNF208 MUTATED ZNF208 WILD-TYPE
  COLON               8              146
  RECTUM              3               65
D243V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF208 MUTATED      6    5
  ZNF208 WILD-TYPE  111  102
        clus
vv       ZNF208 MUTATED ZNF208 WILD-TYPE
  FEMALE              5              102
  MALE                6              111
D243V5, multiclass
                                clus
vv                               ZNF208 MUTATED ZNF208 WILD-TYPE
  COLON ADENOCARCINOMA                        6              122
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D243V6, multiclass
    clus
vv   ZNF208 MUTATED ZNF208 WILD-TYPE
  T1              1                8
  T2              3               44
  T3              4              146
  T4              3               14
D243V7, multiclass
    clus
vv   ZNF208 MUTATED ZNF208 WILD-TYPE
  N0              6              128
  N1              3               41
  N2              2               44
D243V8, multiclass
     clus
vv    ZNF208 MUTATED ZNF208 WILD-TYPE
  M0               7              182
  M1               3               28
  M1A              0                1
D243V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF208 MUTATED     11    0
  ZNF208 WILD-TYPE  205    8
     clus
vv    ZNF208 MUTATED ZNF208 WILD-TYPE
  NO               0                8
  YES             11              205

Clustering(244) Variable = ARHGAP15 MUTATION ANALYSIS
D244V1, survival
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"ARHGAP15 WILD-TYPE"   "ARHGAP15 MUTATED" "ARHGAP15 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
  "ARHGAP15 MUTATED" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE"   "ARHGAP15 MUTATED" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"ARHGAP15 WILD-TYPE"   "ARHGAP15 MUTATED" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE"   "ARHGAP15 MUTATED" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"ARHGAP15 WILD-TYPE"   "ARHGAP15 MUTATED" "ARHGAP15 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
  "ARHGAP15 MUTATED" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE"   "ARHGAP15 MUTATED" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"ARHGAP15 WILD-TYPE"   "ARHGAP15 MUTATED" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE"   "ARHGAP15 MUTATED" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"ARHGAP15 WILD-TYPE"   "ARHGAP15 MUTATED" "ARHGAP15 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
  "ARHGAP15 MUTATED" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE"   "ARHGAP15 MUTATED" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"ARHGAP15 WILD-TYPE"   "ARHGAP15 MUTATED" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE"   "ARHGAP15 MUTATED" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
[1] "hr=" "4.2"
D244V2, continuous
D244V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ARHGAP15 MUTATED      5    2
  ARHGAP15 WILD-TYPE  149   66
        clus
vv       ARHGAP15 MUTATED ARHGAP15 WILD-TYPE
  COLON                 5                149
  RECTUM                2                 66
D244V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ARHGAP15 MUTATED      3    4
  ARHGAP15 WILD-TYPE  114  103
        clus
vv       ARHGAP15 MUTATED ARHGAP15 WILD-TYPE
  FEMALE                4                103
  MALE                  3                114
D244V5, multiclass
                                clus
vv                               ARHGAP15 MUTATED ARHGAP15 WILD-TYPE
  COLON ADENOCARCINOMA                          5                123
  COLON MUCINOUS ADENOCARCINOMA                 0                 24
  RECTAL ADENOCARCINOMA                         1                 56
  RECTAL MUCINOUS ADENOCARCINOMA                1                  7
D244V6, multiclass
    clus
vv   ARHGAP15 MUTATED ARHGAP15 WILD-TYPE
  T1                0                  9
  T2                0                 47
  T3                6                144
  T4                1                 16
D244V7, multiclass
    clus
vv   ARHGAP15 MUTATED ARHGAP15 WILD-TYPE
  N0                2                132
  N1                2                 42
  N2                3                 43
D244V8, multiclass
     clus
vv    ARHGAP15 MUTATED ARHGAP15 WILD-TYPE
  M0                 5                184
  M1                 1                 30
  M1A                1                  0
D244V9, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ARHGAP15 MUTATED      6    1
  ARHGAP15 WILD-TYPE  210    7
     clus
vv    ARHGAP15 MUTATED ARHGAP15 WILD-TYPE
  NO                 1                  7
  YES                6                210

Clustering(245) Variable = DPF2 MUTATION ANALYSIS
D245V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE"   "DPF2 MUTATED" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE"   "DPF2 MUTATED" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE"   "DPF2 MUTATED" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
[1] "Remove cluster labels:" "DPF2 MUTATED"          
clus
  DPF2 MUTATED DPF2 WILD-TYPE 
             1            119 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A020 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
D245V2, continuous
D245V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DPF2 MUTATED      2    2
  DPF2 WILD-TYPE  152   66
        clus
vv       DPF2 MUTATED DPF2 WILD-TYPE
  COLON             2            152
  RECTUM            2             66
D245V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DPF2 MUTATED      1    3
  DPF2 WILD-TYPE  116  104
        clus
vv       DPF2 MUTATED DPF2 WILD-TYPE
  FEMALE            3            104
  MALE              1            116
D245V5, multiclass
                                clus
vv                               DPF2 MUTATED DPF2 WILD-TYPE
  COLON ADENOCARCINOMA                      1            127
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D245V6, multiclass
    clus
vv   DPF2 MUTATED DPF2 WILD-TYPE
  T1            0              9
  T2            0             47
  T3            4            146
  T4            0             17
D245V7, multiclass
    clus
vv   DPF2 MUTATED DPF2 WILD-TYPE
  N0            3            131
  N1            0             44
  N2            1             45
D245V8, multiclass
     clus
vv    DPF2 MUTATED DPF2 WILD-TYPE
  M0             4            185
  M1             0             31
  M1A            0              1
D245V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DPF2 MUTATED      4    0
  DPF2 WILD-TYPE  212    8
     clus
vv    DPF2 MUTATED DPF2 WILD-TYPE
  NO             0              8
  YES            4            212

Clustering(246) Variable = PRKD1 MUTATION ANALYSIS
D246V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRKD1 WILD-TYPE"   "PRKD1 MUTATED" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE"   "PRKD1 MUTATED"   "PRKD1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PRKD1 MUTATED" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE"   "PRKD1 MUTATED" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
  "PRKD1 MUTATED" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PRKD1 MUTATED" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE"   "PRKD1 MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRKD1 WILD-TYPE"   "PRKD1 MUTATED" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE"   "PRKD1 MUTATED"   "PRKD1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PRKD1 MUTATED" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE"   "PRKD1 MUTATED" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
  "PRKD1 MUTATED" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PRKD1 MUTATED" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE"   "PRKD1 MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRKD1 WILD-TYPE"   "PRKD1 MUTATED" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE"   "PRKD1 MUTATED"   "PRKD1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PRKD1 MUTATED" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE"   "PRKD1 MUTATED" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
  "PRKD1 MUTATED" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PRKD1 MUTATED" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE"   "PRKD1 MUTATED" 
[1] "hr=" "1"  
D246V2, continuous
D246V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRKD1 MUTATED      8    4
  PRKD1 WILD-TYPE  146   64
        clus
vv       PRKD1 MUTATED PRKD1 WILD-TYPE
  COLON              8             146
  RECTUM             4              64
D246V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRKD1 MUTATED      6    6
  PRKD1 WILD-TYPE  111  101
        clus
vv       PRKD1 MUTATED PRKD1 WILD-TYPE
  FEMALE             6             101
  MALE               6             111
D246V5, multiclass
                                clus
vv                               PRKD1 MUTATED PRKD1 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D246V6, multiclass
    clus
vv   PRKD1 MUTATED PRKD1 WILD-TYPE
  T1             0               9
  T2             5              42
  T3             6             144
  T4             1              16
D246V7, multiclass
    clus
vv   PRKD1 MUTATED PRKD1 WILD-TYPE
  N0            10             124
  N1             0              44
  N2             2              44
D246V8, multiclass
     clus
vv    PRKD1 MUTATED PRKD1 WILD-TYPE
  M0              9             180
  M1              2              29
  M1A             0               1
D246V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRKD1 MUTATED     12    0
  PRKD1 WILD-TYPE  204    8
     clus
vv    PRKD1 MUTATED PRKD1 WILD-TYPE
  NO              0               8
  YES            12             204

Clustering(247) Variable = NAALAD2 MUTATION ANALYSIS
D247V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
[1] "hr=" "1.4"
D247V2, continuous
D247V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  NAALAD2 MUTATED     11    0
  NAALAD2 WILD-TYPE  143   68
        clus
vv       NAALAD2 MUTATED NAALAD2 WILD-TYPE
  COLON               11               143
  RECTUM               0                68
D247V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  NAALAD2 MUTATED      3    8
  NAALAD2 WILD-TYPE  114   99
        clus
vv       NAALAD2 MUTATED NAALAD2 WILD-TYPE
  FEMALE               8                99
  MALE                 3               114
D247V5, multiclass
                                clus
vv                               NAALAD2 MUTATED NAALAD2 WILD-TYPE
  COLON ADENOCARCINOMA                         6               122
  COLON MUCINOUS ADENOCARCINOMA                5                19
  RECTAL ADENOCARCINOMA                        0                57
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D247V6, multiclass
    clus
vv   NAALAD2 MUTATED NAALAD2 WILD-TYPE
  T1               1                 8
  T2               1                46
  T3               4               146
  T4               4                13
D247V7, multiclass
    clus
vv   NAALAD2 MUTATED NAALAD2 WILD-TYPE
  N0               9               125
  N1               2                42
  N2               0                46
D247V8, multiclass
     clus
vv    NAALAD2 MUTATED NAALAD2 WILD-TYPE
  M0               10               179
  M1                1                30
  M1A               0                 1
D247V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  NAALAD2 MUTATED     10    1
  NAALAD2 WILD-TYPE  206    7
     clus
vv    NAALAD2 MUTATED NAALAD2 WILD-TYPE
  NO                1                 7
  YES              10               206

Clustering(248) Variable = AGPAT4 MUTATION ANALYSIS
D248V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "AGPAT4 MUTATED" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"AGPAT4 WILD-TYPE"   "AGPAT4 MUTATED" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "AGPAT4 MUTATED" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "AGPAT4 MUTATED" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"AGPAT4 WILD-TYPE"   "AGPAT4 MUTATED" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "AGPAT4 MUTATED" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "AGPAT4 MUTATED" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"AGPAT4 WILD-TYPE"   "AGPAT4 MUTATED" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "AGPAT4 MUTATED" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D248V2, continuous
D248V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  AGPAT4 MUTATED      5    2
  AGPAT4 WILD-TYPE  149   66
        clus
vv       AGPAT4 MUTATED AGPAT4 WILD-TYPE
  COLON               5              149
  RECTUM              2               66
D248V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  AGPAT4 MUTATED      4    3
  AGPAT4 WILD-TYPE  113  104
        clus
vv       AGPAT4 MUTATED AGPAT4 WILD-TYPE
  FEMALE              3              104
  MALE                4              113
D248V5, multiclass
                                clus
vv                               AGPAT4 MUTATED AGPAT4 WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D248V6, multiclass
    clus
vv   AGPAT4 MUTATED AGPAT4 WILD-TYPE
  T1              0                9
  T2              1               46
  T3              6              144
  T4              0               17
D248V7, multiclass
    clus
vv   AGPAT4 MUTATED AGPAT4 WILD-TYPE
  N0              7              127
  N1              0               44
  N2              0               46
D248V8, multiclass
     clus
vv    AGPAT4 MUTATED AGPAT4 WILD-TYPE
  M0               7              182
  M1               0               31
  M1A              0                1
D248V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  AGPAT4 MUTATED      7    0
  AGPAT4 WILD-TYPE  209    8
     clus
vv    AGPAT4 MUTATED AGPAT4 WILD-TYPE
  NO               0                8
  YES              7              209

Clustering(249) Variable = STON1-GTF2A1L MUTATION ANALYSIS
D249V1, survival
             TCGA-A6-2670              TCGA-A6-2672              TCGA-A6-2674 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-A6-2676              TCGA-A6-2677              TCGA-A6-2678 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-A6-2683              TCGA-A6-3807              TCGA-A6-3808 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-A6-3810              TCGA-AA-3518              TCGA-AA-3526 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3555              TCGA-AA-3562              TCGA-AA-3666 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3679              TCGA-AA-3685              TCGA-AA-3710 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3715              TCGA-AA-3811              TCGA-AA-3818 
"STON1-GTF2A1L WILD-TYPE"   "STON1-GTF2A1L MUTATED" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3837              TCGA-AA-3842              TCGA-AA-3844 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3846              TCGA-AA-3848              TCGA-AA-3854 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3877              TCGA-AA-3939              TCGA-AA-3941 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3947              TCGA-AA-3949              TCGA-AA-3952 
  "STON1-GTF2A1L MUTATED" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3966              TCGA-AA-3975              TCGA-AA-3977 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3986              TCGA-AA-A004              TCGA-AA-A00A 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A00D              TCGA-AA-A00E              TCGA-AA-A00F 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A00J              TCGA-AA-A00K              TCGA-AA-A00L 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A00N              TCGA-AA-A00O              TCGA-AA-A00Q 
  "STON1-GTF2A1L MUTATED" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A00R              TCGA-AA-A00U              TCGA-AA-A00W 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A00Z              TCGA-AA-A010              TCGA-AA-A017 
  "STON1-GTF2A1L MUTATED"   "STON1-GTF2A1L MUTATED"   "STON1-GTF2A1L MUTATED" 
             TCGA-AA-A01D              TCGA-AA-A01F              TCGA-AA-A01G 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A01I              TCGA-AA-A01K              TCGA-AA-A01P 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A01Q              TCGA-AA-A01R              TCGA-AA-A01S 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A01T              TCGA-AA-A01V              TCGA-AA-A01X 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A01Z              TCGA-AA-A024              TCGA-AA-A029 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A02F              TCGA-AA-A02H              TCGA-AA-A02J 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A02O              TCGA-AA-A02W              TCGA-AA-A02Y 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A03F              TCGA-AA-A03J              TCGA-AY-4070 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AY-4071              TCGA-AF-2689              TCGA-AF-2691 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AF-2692              TCGA-AF-3400              TCGA-AF-3913 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-3581              TCGA-AG-3582              TCGA-AG-3583 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-3587              TCGA-AG-3599              TCGA-AG-3726 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-3727              TCGA-AG-3878              TCGA-AG-3887 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-3892              TCGA-AG-3893              TCGA-AG-3894 
  "STON1-GTF2A1L MUTATED" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-3999              TCGA-AG-4001              TCGA-AG-4007 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-4008              TCGA-AG-A002              TCGA-AG-A008 
"STON1-GTF2A1L WILD-TYPE"   "STON1-GTF2A1L MUTATED" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-A00C              TCGA-AG-A00H              TCGA-AG-A00Y 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-A011              TCGA-AG-A014              TCGA-AG-A015 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-A016              TCGA-AG-A01L              TCGA-AG-A01W 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-A01Y              TCGA-AG-A020              TCGA-AG-A025 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-A026              TCGA-AG-A02G              TCGA-AG-A02N 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-A02X              TCGA-AG-A032              TCGA-AG-A036 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-A6-2670              TCGA-A6-2672              TCGA-A6-2674 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-A6-2676              TCGA-A6-2677              TCGA-A6-2678 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-A6-2683              TCGA-A6-3807              TCGA-A6-3808 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-A6-3810              TCGA-AA-3518              TCGA-AA-3526 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3555              TCGA-AA-3562              TCGA-AA-3666 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3679              TCGA-AA-3685              TCGA-AA-3710 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3715              TCGA-AA-3811              TCGA-AA-3818 
"STON1-GTF2A1L WILD-TYPE"   "STON1-GTF2A1L MUTATED" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3837              TCGA-AA-3842              TCGA-AA-3844 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3846              TCGA-AA-3848              TCGA-AA-3854 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3877              TCGA-AA-3939              TCGA-AA-3941 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3947              TCGA-AA-3949              TCGA-AA-3952 
  "STON1-GTF2A1L MUTATED" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3966              TCGA-AA-3975              TCGA-AA-3977 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3986              TCGA-AA-A004              TCGA-AA-A00A 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A00D              TCGA-AA-A00E              TCGA-AA-A00F 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A00J              TCGA-AA-A00K              TCGA-AA-A00L 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A00N              TCGA-AA-A00O              TCGA-AA-A00Q 
  "STON1-GTF2A1L MUTATED" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A00R              TCGA-AA-A00U              TCGA-AA-A00W 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A00Z              TCGA-AA-A010              TCGA-AA-A017 
  "STON1-GTF2A1L MUTATED"   "STON1-GTF2A1L MUTATED"   "STON1-GTF2A1L MUTATED" 
             TCGA-AA-A01D              TCGA-AA-A01F              TCGA-AA-A01G 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A01I              TCGA-AA-A01K              TCGA-AA-A01P 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A01Q              TCGA-AA-A01R              TCGA-AA-A01S 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A01T              TCGA-AA-A01V              TCGA-AA-A01X 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A01Z              TCGA-AA-A024              TCGA-AA-A029 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A02F              TCGA-AA-A02H              TCGA-AA-A02J 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A02O              TCGA-AA-A02W              TCGA-AA-A02Y 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A03F              TCGA-AA-A03J              TCGA-AY-4070 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AY-4071              TCGA-AF-2689              TCGA-AF-2691 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AF-2692              TCGA-AF-3400              TCGA-AF-3913 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-3581              TCGA-AG-3582              TCGA-AG-3583 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-3587              TCGA-AG-3599              TCGA-AG-3726 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-3727              TCGA-AG-3878              TCGA-AG-3887 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-3892              TCGA-AG-3893              TCGA-AG-3894 
  "STON1-GTF2A1L MUTATED" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-3999              TCGA-AG-4001              TCGA-AG-4007 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-4008              TCGA-AG-A002              TCGA-AG-A008 
"STON1-GTF2A1L WILD-TYPE"   "STON1-GTF2A1L MUTATED" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-A00C              TCGA-AG-A00H              TCGA-AG-A00Y 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-A011              TCGA-AG-A014              TCGA-AG-A015 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-A016              TCGA-AG-A01L              TCGA-AG-A01W 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-A01Y              TCGA-AG-A020              TCGA-AG-A025 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-A026              TCGA-AG-A02G              TCGA-AG-A02N 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-A02X              TCGA-AG-A032              TCGA-AG-A036 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-A6-2670              TCGA-A6-2672              TCGA-A6-2674 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-A6-2676              TCGA-A6-2677              TCGA-A6-2678 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-A6-2683              TCGA-A6-3807              TCGA-A6-3808 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-A6-3810              TCGA-AA-3518              TCGA-AA-3526 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3555              TCGA-AA-3562              TCGA-AA-3666 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3679              TCGA-AA-3685              TCGA-AA-3710 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3715              TCGA-AA-3811              TCGA-AA-3818 
"STON1-GTF2A1L WILD-TYPE"   "STON1-GTF2A1L MUTATED" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3837              TCGA-AA-3842              TCGA-AA-3844 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3846              TCGA-AA-3848              TCGA-AA-3854 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3877              TCGA-AA-3939              TCGA-AA-3941 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3947              TCGA-AA-3949              TCGA-AA-3952 
  "STON1-GTF2A1L MUTATED" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3966              TCGA-AA-3975              TCGA-AA-3977 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3986              TCGA-AA-A004              TCGA-AA-A00A 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A00D              TCGA-AA-A00E              TCGA-AA-A00F 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A00J              TCGA-AA-A00K              TCGA-AA-A00L 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A00N              TCGA-AA-A00O              TCGA-AA-A00Q 
  "STON1-GTF2A1L MUTATED" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A00R              TCGA-AA-A00U              TCGA-AA-A00W 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A00Z              TCGA-AA-A010              TCGA-AA-A017 
  "STON1-GTF2A1L MUTATED"   "STON1-GTF2A1L MUTATED"   "STON1-GTF2A1L MUTATED" 
             TCGA-AA-A01D              TCGA-AA-A01F              TCGA-AA-A01G 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A01I              TCGA-AA-A01K              TCGA-AA-A01P 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A01Q              TCGA-AA-A01R              TCGA-AA-A01S 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A01T              TCGA-AA-A01V              TCGA-AA-A01X 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A01Z              TCGA-AA-A024              TCGA-AA-A029 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A02F              TCGA-AA-A02H              TCGA-AA-A02J 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A02O              TCGA-AA-A02W              TCGA-AA-A02Y 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A03F              TCGA-AA-A03J              TCGA-AY-4070 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AY-4071              TCGA-AF-2689              TCGA-AF-2691 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AF-2692              TCGA-AF-3400              TCGA-AF-3913 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-3581              TCGA-AG-3582              TCGA-AG-3583 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-3587              TCGA-AG-3599              TCGA-AG-3726 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-3727              TCGA-AG-3878              TCGA-AG-3887 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-3892              TCGA-AG-3893              TCGA-AG-3894 
  "STON1-GTF2A1L MUTATED" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-3999              TCGA-AG-4001              TCGA-AG-4007 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-4008              TCGA-AG-A002              TCGA-AG-A008 
"STON1-GTF2A1L WILD-TYPE"   "STON1-GTF2A1L MUTATED" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-A00C              TCGA-AG-A00H              TCGA-AG-A00Y 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-A011              TCGA-AG-A014              TCGA-AG-A015 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-A016              TCGA-AG-A01L              TCGA-AG-A01W 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-A01Y              TCGA-AG-A020              TCGA-AG-A025 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-A026              TCGA-AG-A02G              TCGA-AG-A02N 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-A02X              TCGA-AG-A032              TCGA-AG-A036 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
[1] "hr=" "1.3"
D249V2, continuous
D249V3, binary
[1] "tbl2"
                         cls
clus                      [,1] [,2]
  STON1-GTF2A1L MUTATED      9    3
  STON1-GTF2A1L WILD-TYPE  145   65
        clus
vv       STON1-GTF2A1L MUTATED STON1-GTF2A1L WILD-TYPE
  COLON                      9                     145
  RECTUM                     3                      65
D249V4, binary
[1] "tbl2"
                         cls
clus                      [,1] [,2]
  STON1-GTF2A1L MUTATED      3    9
  STON1-GTF2A1L WILD-TYPE  114   98
        clus
vv       STON1-GTF2A1L MUTATED STON1-GTF2A1L WILD-TYPE
  FEMALE                     9                      98
  MALE                       3                     114
D249V5, multiclass
                                clus
vv                               STON1-GTF2A1L MUTATED STON1-GTF2A1L WILD-TYPE
  COLON ADENOCARCINOMA                               6                     122
  COLON MUCINOUS ADENOCARCINOMA                      3                      21
  RECTAL ADENOCARCINOMA                              3                      54
  RECTAL MUCINOUS ADENOCARCINOMA                     0                       8
D249V6, multiclass
    clus
vv   STON1-GTF2A1L MUTATED STON1-GTF2A1L WILD-TYPE
  T1                     1                       8
  T2                     1                      46
  T3                     5                     145
  T4                     5                      12
D249V7, multiclass
    clus
vv   STON1-GTF2A1L MUTATED STON1-GTF2A1L WILD-TYPE
  N0                     8                     126
  N1                     2                      42
  N2                     2                      44
D249V8, multiclass
     clus
vv    STON1-GTF2A1L MUTATED STON1-GTF2A1L WILD-TYPE
  M0                     10                     179
  M1                      2                      29
  M1A                     0                       1
D249V9, binary
[1] "tbl2"
                         cls
clus                      [,1] [,2]
  STON1-GTF2A1L MUTATED     12    0
  STON1-GTF2A1L WILD-TYPE  204    8
     clus
vv    STON1-GTF2A1L MUTATED STON1-GTF2A1L WILD-TYPE
  NO                      0                       8
  YES                    12                     204

Clustering(250) Variable = ZFHX4 MUTATION ANALYSIS
D250V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED"   "ZFHX4 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
  "ZFHX4 MUTATED"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED"   "ZFHX4 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
  "ZFHX4 MUTATED"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED"   "ZFHX4 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
  "ZFHX4 MUTATED"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
[1] "hr=" "6.2"
D250V2, continuous
D250V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZFHX4 MUTATED     16    7
  ZFHX4 WILD-TYPE  138   61
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  COLON             16             138
  RECTUM             7              61
D250V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZFHX4 MUTATED     10   14
  ZFHX4 WILD-TYPE  107   93
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  FEMALE            14              93
  MALE              10             107
D250V5, multiclass
                                clus
vv                               ZFHX4 MUTATED ZFHX4 WILD-TYPE
  COLON ADENOCARCINOMA                      12             116
  COLON MUCINOUS ADENOCARCINOMA              4              20
  RECTAL ADENOCARCINOMA                      7              50
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D250V6, multiclass
    clus
vv   ZFHX4 MUTATED ZFHX4 WILD-TYPE
  T1             3               6
  T2             4              43
  T3            13             137
  T4             4              13
D250V7, multiclass
    clus
vv   ZFHX4 MUTATED ZFHX4 WILD-TYPE
  N0            19             115
  N1             2              42
  N2             3              43
D250V8, multiclass
     clus
vv    ZFHX4 MUTATED ZFHX4 WILD-TYPE
  M0             21             168
  M1              1              30
  M1A             0               1
D250V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZFHX4 MUTATED     24    0
  ZFHX4 WILD-TYPE  192    8
     clus
vv    ZFHX4 MUTATED ZFHX4 WILD-TYPE
  NO              0               8
  YES            24             192

Clustering(251) Variable = C15ORF2 MUTATION ANALYSIS
D251V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
  "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED"   "C15ORF2 MUTATED" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
  "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED"   "C15ORF2 MUTATED" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
  "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED"   "C15ORF2 MUTATED" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
[1] "hr=" "2"  
D251V2, continuous
D251V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C15ORF2 MUTATED      8    4
  C15ORF2 WILD-TYPE  146   64
        clus
vv       C15ORF2 MUTATED C15ORF2 WILD-TYPE
  COLON                8               146
  RECTUM               4                64
D251V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C15ORF2 MUTATED      8    4
  C15ORF2 WILD-TYPE  109  103
        clus
vv       C15ORF2 MUTATED C15ORF2 WILD-TYPE
  FEMALE               4               103
  MALE                 8               109
D251V5, multiclass
                                clus
vv                               C15ORF2 MUTATED C15ORF2 WILD-TYPE
  COLON ADENOCARCINOMA                         5               123
  COLON MUCINOUS ADENOCARCINOMA                3                21
  RECTAL ADENOCARCINOMA                        4                53
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D251V6, multiclass
    clus
vv   C15ORF2 MUTATED C15ORF2 WILD-TYPE
  T1               1                 8
  T2               4                43
  T3               6               144
  T4               1                16
D251V7, multiclass
    clus
vv   C15ORF2 MUTATED C15ORF2 WILD-TYPE
  N0              11               123
  N1               0                44
  N2               1                45
D251V8, multiclass
     clus
vv    C15ORF2 MUTATED C15ORF2 WILD-TYPE
  M0               11               178
  M1                0                31
  M1A               0                 1
D251V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C15ORF2 MUTATED     12    0
  C15ORF2 WILD-TYPE  204    8
     clus
vv    C15ORF2 MUTATED C15ORF2 WILD-TYPE
  NO                0                 8
  YES              12               204

Clustering(252) Variable = ZNF677 MUTATION ANALYSIS
D252V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF677 WILD-TYPE"   "ZNF677 MUTATED" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE"   "ZNF677 MUTATED" "ZNF677 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE"   "ZNF677 MUTATED" "ZNF677 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE"   "ZNF677 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF677 MUTATED" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF677 MUTATED" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF677 WILD-TYPE"   "ZNF677 MUTATED" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE"   "ZNF677 MUTATED" "ZNF677 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE"   "ZNF677 MUTATED" "ZNF677 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE"   "ZNF677 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF677 MUTATED" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF677 MUTATED" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF677 WILD-TYPE"   "ZNF677 MUTATED" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE"   "ZNF677 MUTATED" "ZNF677 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE"   "ZNF677 MUTATED" "ZNF677 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE"   "ZNF677 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF677 MUTATED" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF677 MUTATED" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D252V2, continuous
D252V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF677 MUTATED      8    1
  ZNF677 WILD-TYPE  146   67
        clus
vv       ZNF677 MUTATED ZNF677 WILD-TYPE
  COLON               8              146
  RECTUM              1               67
D252V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF677 MUTATED      5    4
  ZNF677 WILD-TYPE  112  103
        clus
vv       ZNF677 MUTATED ZNF677 WILD-TYPE
  FEMALE              4              103
  MALE                5              112
D252V5, multiclass
                                clus
vv                               ZNF677 MUTATED ZNF677 WILD-TYPE
  COLON ADENOCARCINOMA                        6              122
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D252V6, multiclass
    clus
vv   ZNF677 MUTATED ZNF677 WILD-TYPE
  T1              0                9
  T2              3               44
  T3              4              146
  T4              2               15
D252V7, multiclass
    clus
vv   ZNF677 MUTATED ZNF677 WILD-TYPE
  N0              7              127
  N1              1               43
  N2              1               45
D252V8, multiclass
     clus
vv    ZNF677 MUTATED ZNF677 WILD-TYPE
  M0               8              181
  M1               0               31
  M1A              0                1
D252V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF677 MUTATED      9    0
  ZNF677 WILD-TYPE  207    8
     clus
vv    ZNF677 MUTATED ZNF677 WILD-TYPE
  NO               0                8
  YES              9              207

Clustering(253) Variable = ANO4 MUTATION ANALYSIS
D253V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" "ANO4 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" "ANO4 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" "ANO4 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
[1] "hr=" "3.3"
D253V2, continuous
D253V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ANO4 MUTATED      7    4
  ANO4 WILD-TYPE  147   64
        clus
vv       ANO4 MUTATED ANO4 WILD-TYPE
  COLON             7            147
  RECTUM            4             64
D253V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ANO4 MUTATED      5    6
  ANO4 WILD-TYPE  112  101
        clus
vv       ANO4 MUTATED ANO4 WILD-TYPE
  FEMALE            6            101
  MALE              5            112
D253V5, multiclass
                                clus
vv                               ANO4 MUTATED ANO4 WILD-TYPE
  COLON ADENOCARCINOMA                      4            124
  COLON MUCINOUS ADENOCARCINOMA             3             21
  RECTAL ADENOCARCINOMA                     3             54
  RECTAL MUCINOUS ADENOCARCINOMA            1              7
D253V6, multiclass
    clus
vv   ANO4 MUTATED ANO4 WILD-TYPE
  T1            0              9
  T2            1             46
  T3            9            141
  T4            0             17
D253V7, multiclass
    clus
vv   ANO4 MUTATED ANO4 WILD-TYPE
  N0            4            130
  N1            4             40
  N2            3             43
D253V8, multiclass
     clus
vv    ANO4 MUTATED ANO4 WILD-TYPE
  M0             6            183
  M1             4             27
  M1A            0              1
D253V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ANO4 MUTATED     10    1
  ANO4 WILD-TYPE  206    7
     clus
vv    ANO4 MUTATED ANO4 WILD-TYPE
  NO             1              7
  YES           10            206

Clustering(254) Variable = ESR1 MUTATION ANALYSIS
D254V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE"   "ESR1 MUTATED"   "ESR1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE"   "ESR1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ESR1 WILD-TYPE"   "ESR1 MUTATED" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ESR1 MUTATED" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "ESR1 MUTATED" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE"   "ESR1 MUTATED"   "ESR1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE"   "ESR1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ESR1 WILD-TYPE"   "ESR1 MUTATED" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ESR1 MUTATED" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "ESR1 MUTATED" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE"   "ESR1 MUTATED"   "ESR1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE"   "ESR1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ESR1 WILD-TYPE"   "ESR1 MUTATED" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ESR1 MUTATED" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "ESR1 MUTATED" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
[1] "hr=" "3"  
D254V2, continuous
D254V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ESR1 MUTATED     11    0
  ESR1 WILD-TYPE  143   68
        clus
vv       ESR1 MUTATED ESR1 WILD-TYPE
  COLON            11            143
  RECTUM            0             68
D254V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ESR1 MUTATED      6    5
  ESR1 WILD-TYPE  111  102
        clus
vv       ESR1 MUTATED ESR1 WILD-TYPE
  FEMALE            5            102
  MALE              6            111
D254V5, multiclass
                                clus
vv                               ESR1 MUTATED ESR1 WILD-TYPE
  COLON ADENOCARCINOMA                      8            120
  COLON MUCINOUS ADENOCARCINOMA             3             21
  RECTAL ADENOCARCINOMA                     0             57
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D254V6, multiclass
    clus
vv   ESR1 MUTATED ESR1 WILD-TYPE
  T1            0              9
  T2            2             45
  T3            5            145
  T4            4             13
D254V7, multiclass
    clus
vv   ESR1 MUTATED ESR1 WILD-TYPE
  N0            7            127
  N1            3             41
  N2            1             45
D254V8, multiclass
     clus
vv    ESR1 MUTATED ESR1 WILD-TYPE
  M0            10            179
  M1             0             31
  M1A            0              1
D254V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ESR1 MUTATED     11    0
  ESR1 WILD-TYPE  205    8
     clus
vv    ESR1 MUTATED ESR1 WILD-TYPE
  NO             0              8
  YES           11            205

Clustering(255) Variable = ATP6V0D2 MUTATION ANALYSIS
D255V1, survival
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
  "ATP6V0D2 MUTATED" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE"   "ATP6V0D2 MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
  "ATP6V0D2 MUTATED" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
  "ATP6V0D2 MUTATED" "ATP6V0D2 WILD-TYPE"   "ATP6V0D2 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "ATP6V0D2 MUTATED" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"ATP6V0D2 WILD-TYPE"   "ATP6V0D2 MUTATED" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
  "ATP6V0D2 MUTATED" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE"   "ATP6V0D2 MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
  "ATP6V0D2 MUTATED" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
  "ATP6V0D2 MUTATED" "ATP6V0D2 WILD-TYPE"   "ATP6V0D2 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "ATP6V0D2 MUTATED" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"ATP6V0D2 WILD-TYPE"   "ATP6V0D2 MUTATED" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
  "ATP6V0D2 MUTATED" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE"   "ATP6V0D2 MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
  "ATP6V0D2 MUTATED" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
  "ATP6V0D2 MUTATED" "ATP6V0D2 WILD-TYPE"   "ATP6V0D2 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "ATP6V0D2 MUTATED" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"ATP6V0D2 WILD-TYPE"   "ATP6V0D2 MUTATED" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
[1] "hr=" "2.7"
D255V2, continuous
D255V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ATP6V0D2 MUTATED      6    2
  ATP6V0D2 WILD-TYPE  148   66
        clus
vv       ATP6V0D2 MUTATED ATP6V0D2 WILD-TYPE
  COLON                 6                148
  RECTUM                2                 66
D255V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ATP6V0D2 MUTATED      5    3
  ATP6V0D2 WILD-TYPE  112  104
        clus
vv       ATP6V0D2 MUTATED ATP6V0D2 WILD-TYPE
  FEMALE                3                104
  MALE                  5                112
D255V5, multiclass
                                clus
vv                               ATP6V0D2 MUTATED ATP6V0D2 WILD-TYPE
  COLON ADENOCARCINOMA                          3                125
  COLON MUCINOUS ADENOCARCINOMA                 3                 21
  RECTAL ADENOCARCINOMA                         2                 55
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
D255V6, multiclass
    clus
vv   ATP6V0D2 MUTATED ATP6V0D2 WILD-TYPE
  T1                0                  9
  T2                2                 45
  T3                5                145
  T4                1                 16
D255V7, multiclass
    clus
vv   ATP6V0D2 MUTATED ATP6V0D2 WILD-TYPE
  N0                8                126
  N1                0                 44
  N2                0                 46
D255V8, multiclass
     clus
vv    ATP6V0D2 MUTATED ATP6V0D2 WILD-TYPE
  M0                 7                182
  M1                 0                 31
  M1A                0                  1
D255V9, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ATP6V0D2 MUTATED      8    0
  ATP6V0D2 WILD-TYPE  208    8
     clus
vv    ATP6V0D2 MUTATED ATP6V0D2 WILD-TYPE
  NO                 0                  8
  YES                8                208

Clustering(256) Variable = FHOD3 MUTATION ANALYSIS
D256V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE"   "FHOD3 MUTATED" "FHOD3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FHOD3 WILD-TYPE"   "FHOD3 MUTATED" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE"   "FHOD3 MUTATED" "FHOD3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FHOD3 WILD-TYPE"   "FHOD3 MUTATED" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FHOD3 MUTATED" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "FHOD3 MUTATED" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FHOD3 MUTATED" "FHOD3 WILD-TYPE"   "FHOD3 MUTATED" "FHOD3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "FHOD3 MUTATED" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE"   "FHOD3 MUTATED" "FHOD3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FHOD3 WILD-TYPE"   "FHOD3 MUTATED" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE"   "FHOD3 MUTATED" "FHOD3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FHOD3 WILD-TYPE"   "FHOD3 MUTATED" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FHOD3 MUTATED" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "FHOD3 MUTATED" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FHOD3 MUTATED" "FHOD3 WILD-TYPE"   "FHOD3 MUTATED" "FHOD3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "FHOD3 MUTATED" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE"   "FHOD3 MUTATED" "FHOD3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FHOD3 WILD-TYPE"   "FHOD3 MUTATED" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE"   "FHOD3 MUTATED" "FHOD3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FHOD3 WILD-TYPE"   "FHOD3 MUTATED" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FHOD3 MUTATED" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "FHOD3 MUTATED" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FHOD3 MUTATED" "FHOD3 WILD-TYPE"   "FHOD3 MUTATED" "FHOD3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "FHOD3 MUTATED" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" "FHOD3 WILD-TYPE" 
[1] "hr=" "1.2"
D256V2, continuous
D256V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FHOD3 MUTATED      9    3
  FHOD3 WILD-TYPE  145   65
        clus
vv       FHOD3 MUTATED FHOD3 WILD-TYPE
  COLON              9             145
  RECTUM             3              65
D256V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FHOD3 MUTATED      6    6
  FHOD3 WILD-TYPE  111  101
        clus
vv       FHOD3 MUTATED FHOD3 WILD-TYPE
  FEMALE             6             101
  MALE               6             111
D256V5, multiclass
                                clus
vv                               FHOD3 MUTATED FHOD3 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D256V6, multiclass
    clus
vv   FHOD3 MUTATED FHOD3 WILD-TYPE
  T1             0               9
  T2             1              46
  T3             8             142
  T4             3              14
D256V7, multiclass
    clus
vv   FHOD3 MUTATED FHOD3 WILD-TYPE
  N0             9             125
  N1             2              42
  N2             1              45
D256V8, multiclass
     clus
vv    FHOD3 MUTATED FHOD3 WILD-TYPE
  M0             11             178
  M1              1              30
  M1A             0               1
D256V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FHOD3 MUTATED     12    0
  FHOD3 WILD-TYPE  204    8
     clus
vv    FHOD3 MUTATED FHOD3 WILD-TYPE
  NO              0               8
  YES            12             204

Clustering(257) Variable = SULT1C4 MUTATION ANALYSIS
D257V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE"   "SULT1C4 MUTATED" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "SULT1C4 MUTATED" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SULT1C4 WILD-TYPE"   "SULT1C4 MUTATED" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE"   "SULT1C4 MUTATED" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "SULT1C4 MUTATED" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SULT1C4 WILD-TYPE"   "SULT1C4 MUTATED" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE"   "SULT1C4 MUTATED" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "SULT1C4 MUTATED" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SULT1C4 WILD-TYPE"   "SULT1C4 MUTATED" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
[1] "hr=" "10" 
D257V2, continuous
D257V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SULT1C4 MUTATED      3    0
  SULT1C4 WILD-TYPE  151   68
        clus
vv       SULT1C4 MUTATED SULT1C4 WILD-TYPE
  COLON                3               151
  RECTUM               0                68
D257V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SULT1C4 MUTATED      2    1
  SULT1C4 WILD-TYPE  115  106
        clus
vv       SULT1C4 MUTATED SULT1C4 WILD-TYPE
  FEMALE               1               106
  MALE                 2               115
D257V5, multiclass
                                clus
vv                               SULT1C4 MUTATED SULT1C4 WILD-TYPE
  COLON ADENOCARCINOMA                         1               127
  COLON MUCINOUS ADENOCARCINOMA                2                22
  RECTAL ADENOCARCINOMA                        0                57
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D257V6, multiclass
    clus
vv   SULT1C4 MUTATED SULT1C4 WILD-TYPE
  T1               0                 9
  T2               1                46
  T3               1               149
  T4               1                16
D257V7, multiclass
    clus
vv   SULT1C4 MUTATED SULT1C4 WILD-TYPE
  N0               3               131
  N1               0                44
  N2               0                46
D257V8, multiclass
     clus
vv    SULT1C4 MUTATED SULT1C4 WILD-TYPE
  M0                3               186
  M1                0                31
  M1A               0                 1
D257V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SULT1C4 MUTATED      3    0
  SULT1C4 WILD-TYPE  213    8
     clus
vv    SULT1C4 MUTATED SULT1C4 WILD-TYPE
  NO                0                 8
  YES               3               213

Clustering(258) Variable = TAF1L MUTATION ANALYSIS
D258V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TAF1L WILD-TYPE"   "TAF1L MUTATED" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE"   "TAF1L MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE"   "TAF1L MUTATED" "TAF1L WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE"   "TAF1L MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TAF1L WILD-TYPE"   "TAF1L MUTATED" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TAF1L WILD-TYPE"   "TAF1L MUTATED" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TAF1L MUTATED" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE"   "TAF1L MUTATED" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TAF1L WILD-TYPE"   "TAF1L MUTATED" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TAF1L MUTATED" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TAF1L WILD-TYPE"   "TAF1L MUTATED" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE"   "TAF1L MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE"   "TAF1L MUTATED" "TAF1L WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE"   "TAF1L MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TAF1L WILD-TYPE"   "TAF1L MUTATED" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TAF1L WILD-TYPE"   "TAF1L MUTATED" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TAF1L MUTATED" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE"   "TAF1L MUTATED" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TAF1L WILD-TYPE"   "TAF1L MUTATED" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TAF1L MUTATED" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TAF1L WILD-TYPE"   "TAF1L MUTATED" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE"   "TAF1L MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE"   "TAF1L MUTATED" "TAF1L WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE"   "TAF1L MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TAF1L WILD-TYPE"   "TAF1L MUTATED" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TAF1L WILD-TYPE"   "TAF1L MUTATED" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TAF1L MUTATED" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE"   "TAF1L MUTATED" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TAF1L WILD-TYPE"   "TAF1L MUTATED" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TAF1L MUTATED" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
[1] "hr=" "1.1"
D258V2, continuous
D258V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TAF1L MUTATED     13    3
  TAF1L WILD-TYPE  141   65
        clus
vv       TAF1L MUTATED TAF1L WILD-TYPE
  COLON             13             141
  RECTUM             3              65
D258V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TAF1L MUTATED      5   11
  TAF1L WILD-TYPE  112   96
        clus
vv       TAF1L MUTATED TAF1L WILD-TYPE
  FEMALE            11              96
  MALE               5             112
D258V5, multiclass
                                clus
vv                               TAF1L MUTATED TAF1L WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              5              19
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D258V6, multiclass
    clus
vv   TAF1L MUTATED TAF1L WILD-TYPE
  T1             1               8
  T2             3              44
  T3            10             140
  T4             2              15
D258V7, multiclass
    clus
vv   TAF1L MUTATED TAF1L WILD-TYPE
  N0             9             125
  N1             4              40
  N2             3              43
D258V8, multiclass
     clus
vv    TAF1L MUTATED TAF1L WILD-TYPE
  M0             14             175
  M1              2              29
  M1A             0               1
D258V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TAF1L MUTATED     15    1
  TAF1L WILD-TYPE  201    7
     clus
vv    TAF1L MUTATED TAF1L WILD-TYPE
  NO              1               7
  YES            15             201

Clustering(259) Variable = VWA5A MUTATION ANALYSIS
D259V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE"   "VWA5A MUTATED" "VWA5A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"VWA5A WILD-TYPE"   "VWA5A MUTATED" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "VWA5A MUTATED" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "VWA5A MUTATED" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "VWA5A MUTATED" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE"   "VWA5A MUTATED" "VWA5A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"VWA5A WILD-TYPE"   "VWA5A MUTATED" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "VWA5A MUTATED" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "VWA5A MUTATED" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "VWA5A MUTATED" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE"   "VWA5A MUTATED" "VWA5A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"VWA5A WILD-TYPE"   "VWA5A MUTATED" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "VWA5A MUTATED" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "VWA5A MUTATED" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "VWA5A MUTATED" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" "VWA5A WILD-TYPE" 
[1] "hr="     "7.3e+07"
D259V2, continuous
D259V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  VWA5A MUTATED      6    2
  VWA5A WILD-TYPE  148   66
        clus
vv       VWA5A MUTATED VWA5A WILD-TYPE
  COLON              6             148
  RECTUM             2              66
D259V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  VWA5A MUTATED      3    5
  VWA5A WILD-TYPE  114  102
        clus
vv       VWA5A MUTATED VWA5A WILD-TYPE
  FEMALE             5             102
  MALE               3             114
D259V5, multiclass
                                clus
vv                               VWA5A MUTATED VWA5A WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D259V6, multiclass
    clus
vv   VWA5A MUTATED VWA5A WILD-TYPE
  T1             0               9
  T2             2              45
  T3             4             146
  T4             2              15
D259V7, multiclass
    clus
vv   VWA5A MUTATED VWA5A WILD-TYPE
  N0             7             127
  N1             1              43
  N2             0              46
D259V8, multiclass
     clus
vv    VWA5A MUTATED VWA5A WILD-TYPE
  M0              7             182
  M1              1              30
  M1A             0               1
D259V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  VWA5A MUTATED      7    1
  VWA5A WILD-TYPE  209    7
     clus
vv    VWA5A MUTATED VWA5A WILD-TYPE
  NO              1               7
  YES             7             209

Clustering(260) Variable = ZNF22 MUTATION ANALYSIS
D260V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE"   "ZNF22 MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
  "ZNF22 MUTATED" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZNF22 WILD-TYPE"   "ZNF22 MUTATED" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE"   "ZNF22 MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
  "ZNF22 MUTATED" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZNF22 WILD-TYPE"   "ZNF22 MUTATED" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE"   "ZNF22 MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
  "ZNF22 MUTATED" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZNF22 WILD-TYPE"   "ZNF22 MUTATED" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" "ZNF22 WILD-TYPE" 
[1] "hr="     "3300000"
D260V2, continuous
D260V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZNF22 MUTATED      3    0
  ZNF22 WILD-TYPE  151   68
        clus
vv       ZNF22 MUTATED ZNF22 WILD-TYPE
  COLON              3             151
  RECTUM             0              68
D260V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZNF22 MUTATED      0    3
  ZNF22 WILD-TYPE  117  104
        clus
vv       ZNF22 MUTATED ZNF22 WILD-TYPE
  FEMALE             3             104
  MALE               0             117
D260V5, multiclass
                                clus
vv                               ZNF22 MUTATED ZNF22 WILD-TYPE
  COLON ADENOCARCINOMA                       3             125
  COLON MUCINOUS ADENOCARCINOMA              0              24
  RECTAL ADENOCARCINOMA                      0              57
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D260V6, multiclass
    clus
vv   ZNF22 MUTATED ZNF22 WILD-TYPE
  T1             0               9
  T2             0              47
  T3             2             148
  T4             1              16
D260V7, multiclass
    clus
vv   ZNF22 MUTATED ZNF22 WILD-TYPE
  N0             1             133
  N1             1              43
  N2             1              45
D260V8, multiclass
     clus
vv    ZNF22 MUTATED ZNF22 WILD-TYPE
  M0              2             187
  M1              0              31
  M1A             1               0
D260V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZNF22 MUTATED      3    0
  ZNF22 WILD-TYPE  213    8
     clus
vv    ZNF22 MUTATED ZNF22 WILD-TYPE
  NO              0               8
  YES             3             213

Clustering(261) Variable = ALK MUTATION ANALYSIS
D261V1, survival
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
  "ALK MUTATED" "ALK WILD-TYPE" "ALK WILD-TYPE"   "ALK MUTATED" "ALK WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"ALK WILD-TYPE" "ALK WILD-TYPE"   "ALK MUTATED"   "ALK MUTATED" "ALK WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
  "ALK MUTATED" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "ALK MUTATED" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "ALK MUTATED" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"ALK WILD-TYPE"   "ALK MUTATED" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "ALK MUTATED" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
  "ALK MUTATED" "ALK WILD-TYPE" "ALK WILD-TYPE"   "ALK MUTATED" "ALK WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"ALK WILD-TYPE" "ALK WILD-TYPE"   "ALK MUTATED"   "ALK MUTATED" "ALK WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
  "ALK MUTATED" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "ALK MUTATED" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "ALK MUTATED" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"ALK WILD-TYPE"   "ALK MUTATED" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "ALK MUTATED" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
  "ALK MUTATED" "ALK WILD-TYPE" "ALK WILD-TYPE"   "ALK MUTATED" "ALK WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"ALK WILD-TYPE" "ALK WILD-TYPE"   "ALK MUTATED"   "ALK MUTATED" "ALK WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
  "ALK MUTATED" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "ALK MUTATED" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "ALK MUTATED" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"ALK WILD-TYPE"   "ALK MUTATED" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "ALK MUTATED" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" "ALK WILD-TYPE" 
[1] "hr=" "3.9"
D261V2, continuous
D261V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  ALK MUTATED     10    2
  ALK WILD-TYPE  144   66
        clus
vv       ALK MUTATED ALK WILD-TYPE
  COLON           10           144
  RECTUM           2            66
D261V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  ALK MUTATED      7    5
  ALK WILD-TYPE  110  102
        clus
vv       ALK MUTATED ALK WILD-TYPE
  FEMALE           5           102
  MALE             7           110
D261V5, multiclass
                                clus
vv                               ALK MUTATED ALK WILD-TYPE
  COLON ADENOCARCINOMA                     7           121
  COLON MUCINOUS ADENOCARCINOMA            2            22
  RECTAL ADENOCARCINOMA                    2            55
  RECTAL MUCINOUS ADENOCARCINOMA           0             8
D261V6, multiclass
    clus
vv   ALK MUTATED ALK WILD-TYPE
  T1           0             9
  T2           3            44
  T3           8           142
  T4           1            16
D261V7, multiclass
    clus
vv   ALK MUTATED ALK WILD-TYPE
  N0           8           126
  N1           1            43
  N2           3            43
D261V8, multiclass
     clus
vv    ALK MUTATED ALK WILD-TYPE
  M0           11           178
  M1            0            31
  M1A           0             1
D261V9, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  ALK MUTATED     12    0
  ALK WILD-TYPE  204    8
     clus
vv    ALK MUTATED ALK WILD-TYPE
  NO            0             8
  YES          12           204

Clustering(262) Variable = GPR141 MUTATION ANALYSIS
D262V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE"   "GPR141 MUTATED" "GPR141 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE"   "GPR141 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE"   "GPR141 MUTATED" "GPR141 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE"   "GPR141 MUTATED" "GPR141 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE"   "GPR141 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE"   "GPR141 MUTATED" "GPR141 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE"   "GPR141 MUTATED" "GPR141 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE"   "GPR141 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE"   "GPR141 MUTATED" "GPR141 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" "GPR141 WILD-TYPE" 
[1] "hr="     "3400000"
D262V2, continuous
D262V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR141 MUTATED      3    0
  GPR141 WILD-TYPE  151   68
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  COLON               3              151
  RECTUM              0               68
D262V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR141 MUTATED      1    2
  GPR141 WILD-TYPE  116  105
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  FEMALE              2              105
  MALE                1              116
D262V5, multiclass
                                clus
vv                               GPR141 MUTATED GPR141 WILD-TYPE
  COLON ADENOCARCINOMA                        1              127
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       0               57
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D262V6, multiclass
    clus
vv   GPR141 MUTATED GPR141 WILD-TYPE
  T1              1                8
  T2              0               47
  T3              1              149
  T4              1               16
D262V7, multiclass
    clus
vv   GPR141 MUTATED GPR141 WILD-TYPE
  N0              3              131
  N1              0               44
  N2              0               46
D262V8, multiclass
     clus
vv    GPR141 MUTATED GPR141 WILD-TYPE
  M0               3              186
  M1               0               31
  M1A              0                1
D262V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR141 MUTATED      3    0
  GPR141 WILD-TYPE  213    8
     clus
vv    GPR141 MUTATED GPR141 WILD-TYPE
  NO               0                8
  YES              3              213

Clustering(263) Variable = STAG1 MUTATION ANALYSIS
D263V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE"   "STAG1 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE"   "STAG1 MUTATED" "STAG1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE"   "STAG1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE"   "STAG1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"STAG1 WILD-TYPE"   "STAG1 MUTATED" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "STAG1 MUTATED" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "STAG1 MUTATED" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE"   "STAG1 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE"   "STAG1 MUTATED" "STAG1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE"   "STAG1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE"   "STAG1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"STAG1 WILD-TYPE"   "STAG1 MUTATED" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "STAG1 MUTATED" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "STAG1 MUTATED" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE"   "STAG1 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE"   "STAG1 MUTATED" "STAG1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE"   "STAG1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE"   "STAG1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"STAG1 WILD-TYPE"   "STAG1 MUTATED" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "STAG1 MUTATED" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "STAG1 MUTATED" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
[1] "hr=" "1.7"
D263V2, continuous
D263V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STAG1 MUTATED     10    2
  STAG1 WILD-TYPE  144   66
        clus
vv       STAG1 MUTATED STAG1 WILD-TYPE
  COLON             10             144
  RECTUM             2              66
D263V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STAG1 MUTATED      5    7
  STAG1 WILD-TYPE  112  100
        clus
vv       STAG1 MUTATED STAG1 WILD-TYPE
  FEMALE             7             100
  MALE               5             112
D263V5, multiclass
                                clus
vv                               STAG1 MUTATED STAG1 WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D263V6, multiclass
    clus
vv   STAG1 MUTATED STAG1 WILD-TYPE
  T1             1               8
  T2             3              44
  T3             6             144
  T4             2              15
D263V7, multiclass
    clus
vv   STAG1 MUTATED STAG1 WILD-TYPE
  N0             8             126
  N1             2              42
  N2             2              44
D263V8, multiclass
     clus
vv    STAG1 MUTATED STAG1 WILD-TYPE
  M0             11             178
  M1              0              31
  M1A             0               1
D263V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STAG1 MUTATED     11    1
  STAG1 WILD-TYPE  205    7
     clus
vv    STAG1 MUTATED STAG1 WILD-TYPE
  NO              1               7
  YES            11             205

Clustering(264) Variable = KIAA2022 MUTATION ANALYSIS
D264V1, survival
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
  "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE"   "KIAA2022 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"KIAA2022 WILD-TYPE"   "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
  "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"KIAA2022 WILD-TYPE"   "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"KIAA2022 WILD-TYPE"   "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
  "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE"   "KIAA2022 MUTATED" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
  "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE"   "KIAA2022 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"KIAA2022 WILD-TYPE"   "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
  "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"KIAA2022 WILD-TYPE"   "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"KIAA2022 WILD-TYPE"   "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
  "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE"   "KIAA2022 MUTATED" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
  "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE"   "KIAA2022 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"KIAA2022 WILD-TYPE"   "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
  "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"KIAA2022 WILD-TYPE"   "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"KIAA2022 WILD-TYPE"   "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
  "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE"   "KIAA2022 MUTATED" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
[1] "hr=" "1.5"
D264V2, continuous
D264V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA2022 MUTATED     10    5
  KIAA2022 WILD-TYPE  144   63
        clus
vv       KIAA2022 MUTATED KIAA2022 WILD-TYPE
  COLON                10                144
  RECTUM                5                 63
D264V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA2022 MUTATED      6    9
  KIAA2022 WILD-TYPE  111   98
        clus
vv       KIAA2022 MUTATED KIAA2022 WILD-TYPE
  FEMALE                9                 98
  MALE                  6                111
D264V5, multiclass
                                clus
vv                               KIAA2022 MUTATED KIAA2022 WILD-TYPE
  COLON ADENOCARCINOMA                          8                120
  COLON MUCINOUS ADENOCARCINOMA                 2                 22
  RECTAL ADENOCARCINOMA                         5                 52
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
D264V6, multiclass
    clus
vv   KIAA2022 MUTATED KIAA2022 WILD-TYPE
  T1                1                  8
  T2                3                 44
  T3                7                143
  T4                4                 13
D264V7, multiclass
    clus
vv   KIAA2022 MUTATED KIAA2022 WILD-TYPE
  N0               11                123
  N1                3                 41
  N2                1                 45
D264V8, multiclass
     clus
vv    KIAA2022 MUTATED KIAA2022 WILD-TYPE
  M0                13                176
  M1                 1                 30
  M1A                0                  1
D264V9, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA2022 MUTATED     15    0
  KIAA2022 WILD-TYPE  201    8
     clus
vv    KIAA2022 MUTATED KIAA2022 WILD-TYPE
  NO                 0                  8
  YES               15                201

Clustering(265) Variable = GML MUTATION ANALYSIS
D265V1, survival
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE"   "GML MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE"   "GML MUTATED" "GML WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"GML WILD-TYPE"   "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE"   "GML MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE"   "GML MUTATED" "GML WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"GML WILD-TYPE"   "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE"   "GML MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE"   "GML MUTATED" "GML WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"GML WILD-TYPE"   "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
[1] "hr=" "4"  
D265V2, continuous
D265V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  GML MUTATED      5    1
  GML WILD-TYPE  149   67
        clus
vv       GML MUTATED GML WILD-TYPE
  COLON            5           149
  RECTUM           1            67
D265V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  GML MUTATED      5    1
  GML WILD-TYPE  112  106
        clus
vv       GML MUTATED GML WILD-TYPE
  FEMALE           1           106
  MALE             5           112
D265V5, multiclass
                                clus
vv                               GML MUTATED GML WILD-TYPE
  COLON ADENOCARCINOMA                     4           124
  COLON MUCINOUS ADENOCARCINOMA            1            23
  RECTAL ADENOCARCINOMA                    1            56
  RECTAL MUCINOUS ADENOCARCINOMA           0             8
D265V6, multiclass
    clus
vv   GML MUTATED GML WILD-TYPE
  T1           0             9
  T2           2            45
  T3           4           146
  T4           0            17
D265V7, multiclass
    clus
vv   GML MUTATED GML WILD-TYPE
  N0           3           131
  N1           2            42
  N2           1            45
D265V8, multiclass
     clus
vv    GML MUTATED GML WILD-TYPE
  M0            4           185
  M1            1            30
  M1A           0             1
D265V9, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  GML MUTATED      6    0
  GML WILD-TYPE  210    8
     clus
vv    GML MUTATED GML WILD-TYPE
  NO            0             8
  YES           6           210

Clustering(266) Variable = SLC26A7 MUTATION ANALYSIS
D266V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE"   "SLC26A7 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE"   "SLC26A7 MUTATED" "SLC26A7 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLC26A7 WILD-TYPE"   "SLC26A7 MUTATED" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLC26A7 MUTATED" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
  "SLC26A7 MUTATED" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE"   "SLC26A7 MUTATED" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE"   "SLC26A7 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE"   "SLC26A7 MUTATED" "SLC26A7 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLC26A7 WILD-TYPE"   "SLC26A7 MUTATED" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLC26A7 MUTATED" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
  "SLC26A7 MUTATED" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE"   "SLC26A7 MUTATED" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE"   "SLC26A7 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE"   "SLC26A7 MUTATED" "SLC26A7 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLC26A7 WILD-TYPE"   "SLC26A7 MUTATED" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLC26A7 MUTATED" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
  "SLC26A7 MUTATED" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE"   "SLC26A7 MUTATED" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" "SLC26A7 WILD-TYPE" 
[1] "hr=" "3.6"
D266V2, continuous
D266V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC26A7 MUTATED      7    0
  SLC26A7 WILD-TYPE  147   68
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  COLON                7               147
  RECTUM               0                68
D266V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC26A7 MUTATED      4    3
  SLC26A7 WILD-TYPE  113  104
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  FEMALE               3               104
  MALE                 4               113
D266V5, multiclass
                                clus
vv                               SLC26A7 MUTATED SLC26A7 WILD-TYPE
  COLON ADENOCARCINOMA                         4               124
  COLON MUCINOUS ADENOCARCINOMA                3                21
  RECTAL ADENOCARCINOMA                        0                57
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D266V6, multiclass
    clus
vv   SLC26A7 MUTATED SLC26A7 WILD-TYPE
  T1               0                 9
  T2               0                47
  T3               4               146
  T4               3                14
D266V7, multiclass
    clus
vv   SLC26A7 MUTATED SLC26A7 WILD-TYPE
  N0               5               129
  N1               1                43
  N2               1                45
D266V8, multiclass
     clus
vv    SLC26A7 MUTATED SLC26A7 WILD-TYPE
  M0                6               183
  M1                1                30
  M1A               0                 1
D266V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC26A7 MUTATED      7    0
  SLC26A7 WILD-TYPE  209    8
     clus
vv    SLC26A7 MUTATED SLC26A7 WILD-TYPE
  NO                0                 8
  YES               7               209

Clustering(267) Variable = NXF5 MUTATION ANALYSIS
D267V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "NXF5 MUTATED" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "NXF5 MUTATED" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"NXF5 WILD-TYPE"   "NXF5 MUTATED" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "NXF5 MUTATED" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "NXF5 MUTATED" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "NXF5 MUTATED" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"NXF5 WILD-TYPE"   "NXF5 MUTATED" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "NXF5 MUTATED" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "NXF5 MUTATED" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "NXF5 MUTATED" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"NXF5 WILD-TYPE"   "NXF5 MUTATED" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "NXF5 MUTATED" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
[1] "hr="     "7.9e+07"
D267V2, continuous
D267V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NXF5 MUTATED      4    3
  NXF5 WILD-TYPE  150   65
        clus
vv       NXF5 MUTATED NXF5 WILD-TYPE
  COLON             4            150
  RECTUM            3             65
D267V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NXF5 MUTATED      2    5
  NXF5 WILD-TYPE  115  102
        clus
vv       NXF5 MUTATED NXF5 WILD-TYPE
  FEMALE            5            102
  MALE              2            115
D267V5, multiclass
                                clus
vv                               NXF5 MUTATED NXF5 WILD-TYPE
  COLON ADENOCARCINOMA                      3            125
  COLON MUCINOUS ADENOCARCINOMA             0             24
  RECTAL ADENOCARCINOMA                     3             54
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D267V6, multiclass
    clus
vv   NXF5 MUTATED NXF5 WILD-TYPE
  T1            1              8
  T2            1             46
  T3            4            146
  T4            1             16
D267V7, multiclass
    clus
vv   NXF5 MUTATED NXF5 WILD-TYPE
  N0            7            127
  N1            0             44
  N2            0             46
D267V8, multiclass
     clus
vv    NXF5 MUTATED NXF5 WILD-TYPE
  M0             7            182
  M1             0             31
  M1A            0              1
D267V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NXF5 MUTATED      7    0
  NXF5 WILD-TYPE  209    8
     clus
vv    NXF5 MUTATED NXF5 WILD-TYPE
  NO             0              8
  YES            7            209

Clustering(268) Variable = OR2M2 MUTATION ANALYSIS
D268V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
[1] "hr=" "3.2"
D268V2, continuous
D268V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M2 MUTATED      5    0
  OR2M2 WILD-TYPE  149   68
        clus
vv       OR2M2 MUTATED OR2M2 WILD-TYPE
  COLON              5             149
  RECTUM             0              68
D268V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M2 MUTATED      1    5
  OR2M2 WILD-TYPE  116  102
        clus
vv       OR2M2 MUTATED OR2M2 WILD-TYPE
  FEMALE             5             102
  MALE               1             116
D268V5, multiclass
                                clus
vv                               OR2M2 MUTATED OR2M2 WILD-TYPE
  COLON ADENOCARCINOMA                       2             126
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      0              57
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D268V6, multiclass
    clus
vv   OR2M2 MUTATED OR2M2 WILD-TYPE
  T1             1               8
  T2             0              47
  T3             3             147
  T4             2              15
D268V7, multiclass
    clus
vv   OR2M2 MUTATED OR2M2 WILD-TYPE
  N0             4             130
  N1             1              43
  N2             1              45
D268V8, multiclass
     clus
vv    OR2M2 MUTATED OR2M2 WILD-TYPE
  M0              3             186
  M1              2              29
  M1A             0               1
D268V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M2 MUTATED      6    0
  OR2M2 WILD-TYPE  210    8
     clus
vv    OR2M2 MUTATED OR2M2 WILD-TYPE
  NO              0               8
  YES             6             210

Clustering(269) Variable = SGCZ MUTATION ANALYSIS
D269V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" "SGCZ WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "SGCZ MUTATED" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SGCZ WILD-TYPE"   "SGCZ MUTATED" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" "SGCZ WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "SGCZ MUTATED" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SGCZ WILD-TYPE"   "SGCZ MUTATED" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" "SGCZ WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "SGCZ MUTATED" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SGCZ WILD-TYPE"   "SGCZ MUTATED" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
[1] "hr="     "2.6e+07"
D269V2, continuous
D269V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SGCZ MUTATED      6    1
  SGCZ WILD-TYPE  148   67
        clus
vv       SGCZ MUTATED SGCZ WILD-TYPE
  COLON             6            148
  RECTUM            1             67
D269V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SGCZ MUTATED      4    3
  SGCZ WILD-TYPE  113  104
        clus
vv       SGCZ MUTATED SGCZ WILD-TYPE
  FEMALE            3            104
  MALE              4            113
D269V5, multiclass
                                clus
vv                               SGCZ MUTATED SGCZ WILD-TYPE
  COLON ADENOCARCINOMA                      5            123
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D269V6, multiclass
    clus
vv   SGCZ MUTATED SGCZ WILD-TYPE
  T1            1              8
  T2            2             45
  T3            2            148
  T4            2             15
D269V7, multiclass
    clus
vv   SGCZ MUTATED SGCZ WILD-TYPE
  N0            4            130
  N1            2             42
  N2            1             45
D269V8, multiclass
     clus
vv    SGCZ MUTATED SGCZ WILD-TYPE
  M0             4            185
  M1             1             30
  M1A            0              1
D269V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SGCZ MUTATED      7    0
  SGCZ WILD-TYPE  209    8
     clus
vv    SGCZ MUTATED SGCZ WILD-TYPE
  NO             0              8
  YES            7            209

Clustering(270) Variable = C12ORF54 MUTATION ANALYSIS
D270V1, survival
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE"   "C12ORF54 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
  "C12ORF54 MUTATED" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE"   "C12ORF54 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
  "C12ORF54 MUTATED" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE"   "C12ORF54 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
  "C12ORF54 MUTATED" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
[1] "Remove cluster labels:" "C12ORF54 MUTATED"      
clus
  C12ORF54 MUTATED C12ORF54 WILD-TYPE 
                 2                118 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3986 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01P         TCGA-AA-A01Q 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A01R         TCGA-AA-A01S         TCGA-AA-A01T 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A01V         TCGA-AA-A01X         TCGA-AA-A01Z 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A024         TCGA-AA-A029         TCGA-AA-A02F 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A02H         TCGA-AA-A02J         TCGA-AA-A02O 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AA-A02Y         TCGA-AA-A03F 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A03J         TCGA-AY-4070         TCGA-AY-4071 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AF-2689         TCGA-AF-2691         TCGA-AF-2692 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AF-3400         TCGA-AF-3913         TCGA-AG-3581 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3587 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-3599         TCGA-AG-3726         TCGA-AG-3727 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3887         TCGA-AG-3893 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3999         TCGA-AG-4001 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-A002 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A008         TCGA-AG-A00C         TCGA-AG-A00H 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A00Y         TCGA-AG-A011         TCGA-AG-A014 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A015         TCGA-AG-A016         TCGA-AG-A01L 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A01W         TCGA-AG-A01Y         TCGA-AG-A020 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A025         TCGA-AG-A026         TCGA-AG-A02G 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A02N         TCGA-AG-A02X         TCGA-AG-A032 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A036 
"C12ORF54 WILD-TYPE" 
D270V2, continuous
D270V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C12ORF54 MUTATED      3    1
  C12ORF54 WILD-TYPE  151   67
        clus
vv       C12ORF54 MUTATED C12ORF54 WILD-TYPE
  COLON                 3                151
  RECTUM                1                 67
D270V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C12ORF54 MUTATED      1    3
  C12ORF54 WILD-TYPE  116  104
        clus
vv       C12ORF54 MUTATED C12ORF54 WILD-TYPE
  FEMALE                3                104
  MALE                  1                116
D270V5, multiclass
                                clus
vv                               C12ORF54 MUTATED C12ORF54 WILD-TYPE
  COLON ADENOCARCINOMA                          3                125
  COLON MUCINOUS ADENOCARCINOMA                 0                 24
  RECTAL ADENOCARCINOMA                         1                 56
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
D270V6, multiclass
    clus
vv   C12ORF54 MUTATED C12ORF54 WILD-TYPE
  T1                1                  8
  T2                2                 45
  T3                1                149
  T4                0                 17
D270V7, multiclass
    clus
vv   C12ORF54 MUTATED C12ORF54 WILD-TYPE
  N0                3                131
  N1                1                 43
  N2                0                 46
D270V8, multiclass
     clus
vv    C12ORF54 MUTATED C12ORF54 WILD-TYPE
  M0                 3                186
  M1                 0                 31
  M1A                0                  1
D270V9, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C12ORF54 MUTATED      4    0
  C12ORF54 WILD-TYPE  212    8
     clus
vv    C12ORF54 MUTATED C12ORF54 WILD-TYPE
  NO                 0                  8
  YES                4                212

Clustering(271) Variable = NCKAP5 MUTATION ANALYSIS
D271V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
[1] "hr=" "1.3"
D271V2, continuous
D271V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NCKAP5 MUTATED     13    2
  NCKAP5 WILD-TYPE  141   66
        clus
vv       NCKAP5 MUTATED NCKAP5 WILD-TYPE
  COLON              13              141
  RECTUM              2               66
D271V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NCKAP5 MUTATED      8    7
  NCKAP5 WILD-TYPE  109  100
        clus
vv       NCKAP5 MUTATED NCKAP5 WILD-TYPE
  FEMALE              7              100
  MALE                8              109
D271V5, multiclass
                                clus
vv                               NCKAP5 MUTATED NCKAP5 WILD-TYPE
  COLON ADENOCARCINOMA                       10              118
  COLON MUCINOUS ADENOCARCINOMA               3               21
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D271V6, multiclass
    clus
vv   NCKAP5 MUTATED NCKAP5 WILD-TYPE
  T1              0                9
  T2              4               43
  T3              8              142
  T4              3               14
D271V7, multiclass
    clus
vv   NCKAP5 MUTATED NCKAP5 WILD-TYPE
  N0              8              126
  N1              4               40
  N2              3               43
D271V8, multiclass
     clus
vv    NCKAP5 MUTATED NCKAP5 WILD-TYPE
  M0              11              178
  M1               3               28
  M1A              0                1
D271V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NCKAP5 MUTATED     15    0
  NCKAP5 WILD-TYPE  201    8
     clus
vv    NCKAP5 MUTATED NCKAP5 WILD-TYPE
  NO               0                8
  YES             15              201

Clustering(272) Variable = GIGYF2 MUTATION ANALYSIS
D272V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE"   "GIGYF2 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE"   "GIGYF2 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE"   "GIGYF2 MUTATED" "GIGYF2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GIGYF2 MUTATED" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GIGYF2 WILD-TYPE"   "GIGYF2 MUTATED" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "GIGYF2 MUTATED" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE"   "GIGYF2 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE"   "GIGYF2 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE"   "GIGYF2 MUTATED" "GIGYF2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GIGYF2 MUTATED" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GIGYF2 WILD-TYPE"   "GIGYF2 MUTATED" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "GIGYF2 MUTATED" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE"   "GIGYF2 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE"   "GIGYF2 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE"   "GIGYF2 MUTATED" "GIGYF2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GIGYF2 MUTATED" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GIGYF2 WILD-TYPE"   "GIGYF2 MUTATED" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "GIGYF2 MUTATED" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D272V2, continuous
D272V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GIGYF2 MUTATED      6    4
  GIGYF2 WILD-TYPE  148   64
        clus
vv       GIGYF2 MUTATED GIGYF2 WILD-TYPE
  COLON               6              148
  RECTUM              4               64
D272V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GIGYF2 MUTATED      3    7
  GIGYF2 WILD-TYPE  114  100
        clus
vv       GIGYF2 MUTATED GIGYF2 WILD-TYPE
  FEMALE              7              100
  MALE                3              114
D272V5, multiclass
                                clus
vv                               GIGYF2 MUTATED GIGYF2 WILD-TYPE
  COLON ADENOCARCINOMA                        3              125
  COLON MUCINOUS ADENOCARCINOMA               3               21
  RECTAL ADENOCARCINOMA                       4               53
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D272V6, multiclass
    clus
vv   GIGYF2 MUTATED GIGYF2 WILD-TYPE
  T1              2                7
  T2              3               44
  T3              3              147
  T4              2               15
D272V7, multiclass
    clus
vv   GIGYF2 MUTATED GIGYF2 WILD-TYPE
  N0              7              127
  N1              3               41
  N2              0               46
D272V8, multiclass
     clus
vv    GIGYF2 MUTATED GIGYF2 WILD-TYPE
  M0              10              179
  M1               0               31
  M1A              0                1
D272V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GIGYF2 MUTATED     10    0
  GIGYF2 WILD-TYPE  206    8
     clus
vv    GIGYF2 MUTATED GIGYF2 WILD-TYPE
  NO               0                8
  YES             10              206

Clustering(273) Variable = GRID1 MUTATION ANALYSIS
D273V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GRID1 WILD-TYPE"   "GRID1 MUTATED" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "GRID1 MUTATED" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "GRID1 MUTATED" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "GRID1 MUTATED" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "GRID1 MUTATED" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GRID1 WILD-TYPE"   "GRID1 MUTATED" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "GRID1 MUTATED" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "GRID1 MUTATED" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "GRID1 MUTATED" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "GRID1 MUTATED" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GRID1 WILD-TYPE"   "GRID1 MUTATED" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "GRID1 MUTATED" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "GRID1 MUTATED" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "GRID1 MUTATED" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "GRID1 MUTATED" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" "GRID1 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D273V2, continuous
D273V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRID1 MUTATED     10    1
  GRID1 WILD-TYPE  144   67
        clus
vv       GRID1 MUTATED GRID1 WILD-TYPE
  COLON             10             144
  RECTUM             1              67
D273V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRID1 MUTATED      2    9
  GRID1 WILD-TYPE  115   98
        clus
vv       GRID1 MUTATED GRID1 WILD-TYPE
  FEMALE             9              98
  MALE               2             115
D273V5, multiclass
                                clus
vv                               GRID1 MUTATED GRID1 WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D273V6, multiclass
    clus
vv   GRID1 MUTATED GRID1 WILD-TYPE
  T1             0               9
  T2             1              46
  T3             8             142
  T4             2              15
D273V7, multiclass
    clus
vv   GRID1 MUTATED GRID1 WILD-TYPE
  N0             6             128
  N1             3              41
  N2             2              44
D273V8, multiclass
     clus
vv    GRID1 MUTATED GRID1 WILD-TYPE
  M0             10             179
  M1              1              30
  M1A             0               1
D273V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRID1 MUTATED     11    0
  GRID1 WILD-TYPE  205    8
     clus
vv    GRID1 MUTATED GRID1 WILD-TYPE
  NO              0               8
  YES            11             205

Clustering(274) Variable = SFPQ MUTATION ANALYSIS
D274V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE"   "SFPQ MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE"   "SFPQ MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SFPQ WILD-TYPE"   "SFPQ MUTATED" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "SFPQ MUTATED" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "SFPQ MUTATED" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE"   "SFPQ MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE"   "SFPQ MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SFPQ WILD-TYPE"   "SFPQ MUTATED" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "SFPQ MUTATED" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "SFPQ MUTATED" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE"   "SFPQ MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE"   "SFPQ MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SFPQ WILD-TYPE"   "SFPQ MUTATED" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "SFPQ MUTATED" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "SFPQ MUTATED" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" "SFPQ WILD-TYPE" 
[1] "hr=" "2.4"
D274V2, continuous
D274V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SFPQ MUTATED      6    1
  SFPQ WILD-TYPE  148   67
        clus
vv       SFPQ MUTATED SFPQ WILD-TYPE
  COLON             6            148
  RECTUM            1             67
D274V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SFPQ MUTATED      2    5
  SFPQ WILD-TYPE  115  102
        clus
vv       SFPQ MUTATED SFPQ WILD-TYPE
  FEMALE            5            102
  MALE              2            115
D274V5, multiclass
                                clus
vv                               SFPQ MUTATED SFPQ WILD-TYPE
  COLON ADENOCARCINOMA                      1            127
  COLON MUCINOUS ADENOCARCINOMA             4             20
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D274V6, multiclass
    clus
vv   SFPQ MUTATED SFPQ WILD-TYPE
  T1            1              8
  T2            1             46
  T3            3            147
  T4            2             15
D274V7, multiclass
    clus
vv   SFPQ MUTATED SFPQ WILD-TYPE
  N0            5            129
  N1            1             43
  N2            1             45
D274V8, multiclass
     clus
vv    SFPQ MUTATED SFPQ WILD-TYPE
  M0             7            182
  M1             0             31
  M1A            0              1
D274V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SFPQ MUTATED      7    0
  SFPQ WILD-TYPE  209    8
     clus
vv    SFPQ MUTATED SFPQ WILD-TYPE
  NO             0              8
  YES            7            209

Clustering(275) Variable = CYTL1 MUTATION ANALYSIS
D275V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "CYTL1 MUTATED" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CYTL1 MUTATED" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "CYTL1 MUTATED" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CYTL1 MUTATED" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "CYTL1 MUTATED" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CYTL1 MUTATED" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
[1] "Remove cluster labels:" "CYTL1 MUTATED"         
clus
  CYTL1 MUTATED CYTL1 WILD-TYPE 
              2             118 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526      TCGA-AA-3555 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679      TCGA-AA-3685 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3818 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3846 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877      TCGA-AA-3939 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3952 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977      TCGA-AA-3986 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A017 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q      TCGA-AA-A01R 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V      TCGA-AA-A01X 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01Z      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02O      TCGA-AA-A02W 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AY-4070 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AY-4071      TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581      TCGA-AG-3582 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599      TCGA-AG-3726 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887      TCGA-AG-3892 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999      TCGA-AG-4001 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002      TCGA-AG-A008 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A025 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N      TCGA-AG-A02X 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A032      TCGA-AG-A036 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
D275V2, continuous
D275V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CYTL1 MUTATED      4    0
  CYTL1 WILD-TYPE  150   68
        clus
vv       CYTL1 MUTATED CYTL1 WILD-TYPE
  COLON              4             150
  RECTUM             0              68
D275V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CYTL1 MUTATED      2    2
  CYTL1 WILD-TYPE  115  105
        clus
vv       CYTL1 MUTATED CYTL1 WILD-TYPE
  FEMALE             2             105
  MALE               2             115
D275V5, multiclass
                                clus
vv                               CYTL1 MUTATED CYTL1 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              0              24
  RECTAL ADENOCARCINOMA                      0              57
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D275V6, multiclass
    clus
vv   CYTL1 MUTATED CYTL1 WILD-TYPE
  T1             1               8
  T2             0              47
  T3             2             148
  T4             1              16
D275V7, multiclass
    clus
vv   CYTL1 MUTATED CYTL1 WILD-TYPE
  N0             4             130
  N1             0              44
  N2             0              46
D275V8, multiclass
     clus
vv    CYTL1 MUTATED CYTL1 WILD-TYPE
  M0              4             185
  M1              0              31
  M1A             0               1
D275V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CYTL1 MUTATED      4    0
  CYTL1 WILD-TYPE  212    8
     clus
vv    CYTL1 MUTATED CYTL1 WILD-TYPE
  NO              0               8
  YES             4             212

Clustering(276) Variable = ANGPTL5 MUTATION ANALYSIS
D276V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "ANGPTL5 MUTATED" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "ANGPTL5 MUTATED" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "ANGPTL5 MUTATED" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
[1] "hr=" "1.4"
D276V2, continuous
D276V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ANGPTL5 MUTATED      7    1
  ANGPTL5 WILD-TYPE  147   67
        clus
vv       ANGPTL5 MUTATED ANGPTL5 WILD-TYPE
  COLON                7               147
  RECTUM               1                67
D276V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ANGPTL5 MUTATED      4    4
  ANGPTL5 WILD-TYPE  113  103
        clus
vv       ANGPTL5 MUTATED ANGPTL5 WILD-TYPE
  FEMALE               4               103
  MALE                 4               113
D276V5, multiclass
                                clus
vv                               ANGPTL5 MUTATED ANGPTL5 WILD-TYPE
  COLON ADENOCARCINOMA                         5               123
  COLON MUCINOUS ADENOCARCINOMA                2                22
  RECTAL ADENOCARCINOMA                        1                56
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D276V6, multiclass
    clus
vv   ANGPTL5 MUTATED ANGPTL5 WILD-TYPE
  T1               0                 9
  T2               2                45
  T3               4               146
  T4               2                15
D276V7, multiclass
    clus
vv   ANGPTL5 MUTATED ANGPTL5 WILD-TYPE
  N0               5               129
  N1               2                42
  N2               1                45
D276V8, multiclass
     clus
vv    ANGPTL5 MUTATED ANGPTL5 WILD-TYPE
  M0                7               182
  M1                0                31
  M1A               0                 1
D276V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ANGPTL5 MUTATED      8    0
  ANGPTL5 WILD-TYPE  208    8
     clus
vv    ANGPTL5 MUTATED ANGPTL5 WILD-TYPE
  NO                0                 8
  YES               8               208

Clustering(277) Variable = ZFPM2 MUTATION ANALYSIS
D277V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZFPM2 WILD-TYPE"   "ZFPM2 MUTATED" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ZFPM2 MUTATED" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE"   "ZFPM2 MUTATED" "ZFPM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ZFPM2 MUTATED" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZFPM2 WILD-TYPE"   "ZFPM2 MUTATED" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ZFPM2 MUTATED" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE"   "ZFPM2 MUTATED" "ZFPM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ZFPM2 MUTATED" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZFPM2 WILD-TYPE"   "ZFPM2 MUTATED" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ZFPM2 MUTATED" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE"   "ZFPM2 MUTATED" "ZFPM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ZFPM2 MUTATED" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
[1] "hr=" "2.5"
D277V2, continuous
D277V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZFPM2 MUTATED      3    3
  ZFPM2 WILD-TYPE  151   65
        clus
vv       ZFPM2 MUTATED ZFPM2 WILD-TYPE
  COLON              3             151
  RECTUM             3              65
D277V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZFPM2 MUTATED      5    1
  ZFPM2 WILD-TYPE  112  106
        clus
vv       ZFPM2 MUTATED ZFPM2 WILD-TYPE
  FEMALE             1             106
  MALE               5             112
D277V5, multiclass
                                clus
vv                               ZFPM2 MUTATED ZFPM2 WILD-TYPE
  COLON ADENOCARCINOMA                       2             126
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D277V6, multiclass
    clus
vv   ZFPM2 MUTATED ZFPM2 WILD-TYPE
  T1             0               9
  T2             1              46
  T3             3             147
  T4             2              15
D277V7, multiclass
    clus
vv   ZFPM2 MUTATED ZFPM2 WILD-TYPE
  N0             5             129
  N1             1              43
  N2             0              46
D277V8, multiclass
     clus
vv    ZFPM2 MUTATED ZFPM2 WILD-TYPE
  M0              6             183
  M1              0              31
  M1A             0               1
D277V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZFPM2 MUTATED      6    0
  ZFPM2 WILD-TYPE  210    8
     clus
vv    ZFPM2 MUTATED ZFPM2 WILD-TYPE
  NO              0               8
  YES             6             210

Clustering(278) Variable = E2F7 MUTATION ANALYSIS
D278V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE"   "E2F7 MUTATED" "E2F7 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE"   "E2F7 MUTATED" "E2F7 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"E2F7 WILD-TYPE"   "E2F7 MUTATED" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "E2F7 MUTATED" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "E2F7 MUTATED" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE"   "E2F7 MUTATED" "E2F7 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE"   "E2F7 MUTATED" "E2F7 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"E2F7 WILD-TYPE"   "E2F7 MUTATED" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "E2F7 MUTATED" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "E2F7 MUTATED" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE"   "E2F7 MUTATED" "E2F7 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE"   "E2F7 MUTATED" "E2F7 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"E2F7 WILD-TYPE"   "E2F7 MUTATED" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "E2F7 MUTATED" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "E2F7 MUTATED" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" "E2F7 WILD-TYPE" 
[1] "hr=" "2.2"
D278V2, continuous
D278V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  E2F7 MUTATED      8    2
  E2F7 WILD-TYPE  146   66
        clus
vv       E2F7 MUTATED E2F7 WILD-TYPE
  COLON             8            146
  RECTUM            2             66
D278V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  E2F7 MUTATED      4    6
  E2F7 WILD-TYPE  113  101
        clus
vv       E2F7 MUTATED E2F7 WILD-TYPE
  FEMALE            6            101
  MALE              4            113
D278V5, multiclass
                                clus
vv                               E2F7 MUTATED E2F7 WILD-TYPE
  COLON ADENOCARCINOMA                      5            123
  COLON MUCINOUS ADENOCARCINOMA             3             21
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D278V6, multiclass
    clus
vv   E2F7 MUTATED E2F7 WILD-TYPE
  T1            1              8
  T2            2             45
  T3            5            145
  T4            2             15
D278V7, multiclass
    clus
vv   E2F7 MUTATED E2F7 WILD-TYPE
  N0            8            126
  N1            1             43
  N2            1             45
D278V8, multiclass
     clus
vv    E2F7 MUTATED E2F7 WILD-TYPE
  M0            10            179
  M1             0             31
  M1A            0              1
D278V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  E2F7 MUTATED     10    0
  E2F7 WILD-TYPE  206    8
     clus
vv    E2F7 MUTATED E2F7 WILD-TYPE
  NO             0              8
  YES           10            206

Clustering(279) Variable = NCOA6 MUTATION ANALYSIS
D279V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE"   "NCOA6 MUTATED" "NCOA6 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NCOA6 WILD-TYPE"   "NCOA6 MUTATED" "NCOA6 WILD-TYPE"   "NCOA6 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NCOA6 WILD-TYPE"   "NCOA6 MUTATED" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NCOA6 MUTATED" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE"   "NCOA6 MUTATED" "NCOA6 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NCOA6 MUTATED" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE"   "NCOA6 MUTATED" "NCOA6 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NCOA6 WILD-TYPE"   "NCOA6 MUTATED" "NCOA6 WILD-TYPE"   "NCOA6 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NCOA6 WILD-TYPE"   "NCOA6 MUTATED" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NCOA6 MUTATED" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE"   "NCOA6 MUTATED" "NCOA6 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NCOA6 MUTATED" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE"   "NCOA6 MUTATED" "NCOA6 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NCOA6 WILD-TYPE"   "NCOA6 MUTATED" "NCOA6 WILD-TYPE"   "NCOA6 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NCOA6 WILD-TYPE"   "NCOA6 MUTATED" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NCOA6 MUTATED" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE"   "NCOA6 MUTATED" "NCOA6 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NCOA6 MUTATED" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" "NCOA6 WILD-TYPE" 
[1] "hr=" "2"  
D279V2, continuous
D279V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NCOA6 MUTATED      6    2
  NCOA6 WILD-TYPE  148   66
        clus
vv       NCOA6 MUTATED NCOA6 WILD-TYPE
  COLON              6             148
  RECTUM             2              66
D279V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NCOA6 MUTATED      6    2
  NCOA6 WILD-TYPE  111  105
        clus
vv       NCOA6 MUTATED NCOA6 WILD-TYPE
  FEMALE             2             105
  MALE               6             111
D279V5, multiclass
                                clus
vv                               NCOA6 MUTATED NCOA6 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D279V6, multiclass
    clus
vv   NCOA6 MUTATED NCOA6 WILD-TYPE
  T1             0               9
  T2             2              45
  T3             4             146
  T4             2              15
D279V7, multiclass
    clus
vv   NCOA6 MUTATED NCOA6 WILD-TYPE
  N0             6             128
  N1             2              42
  N2             0              46
D279V8, multiclass
     clus
vv    NCOA6 MUTATED NCOA6 WILD-TYPE
  M0              7             182
  M1              0              31
  M1A             0               1
D279V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NCOA6 MUTATED      8    0
  NCOA6 WILD-TYPE  208    8
     clus
vv    NCOA6 MUTATED NCOA6 WILD-TYPE
  NO              0               8
  YES             8             208

Clustering(280) Variable = SLC6A15 MUTATION ANALYSIS
D280V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE"   "SLC6A15 MUTATED" "SLC6A15 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "SLC6A15 MUTATED" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE"   "SLC6A15 MUTATED" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLC6A15 WILD-TYPE"   "SLC6A15 MUTATED" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLC6A15 MUTATED" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE"   "SLC6A15 MUTATED" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLC6A15 WILD-TYPE"   "SLC6A15 MUTATED" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SLC6A15 MUTATED" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE"   "SLC6A15 MUTATED" "SLC6A15 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "SLC6A15 MUTATED" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE"   "SLC6A15 MUTATED" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLC6A15 WILD-TYPE"   "SLC6A15 MUTATED" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLC6A15 MUTATED" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE"   "SLC6A15 MUTATED" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLC6A15 WILD-TYPE"   "SLC6A15 MUTATED" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SLC6A15 MUTATED" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE"   "SLC6A15 MUTATED" "SLC6A15 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "SLC6A15 MUTATED" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE"   "SLC6A15 MUTATED" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLC6A15 WILD-TYPE"   "SLC6A15 MUTATED" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLC6A15 MUTATED" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE"   "SLC6A15 MUTATED" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLC6A15 WILD-TYPE"   "SLC6A15 MUTATED" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SLC6A15 MUTATED" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
[1] "hr=" "3.6"
D280V2, continuous
D280V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC6A15 MUTATED      7    3
  SLC6A15 WILD-TYPE  147   65
        clus
vv       SLC6A15 MUTATED SLC6A15 WILD-TYPE
  COLON                7               147
  RECTUM               3                65
D280V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC6A15 MUTATED      4    6
  SLC6A15 WILD-TYPE  113  101
        clus
vv       SLC6A15 MUTATED SLC6A15 WILD-TYPE
  FEMALE               6               101
  MALE                 4               113
D280V5, multiclass
                                clus
vv                               SLC6A15 MUTATED SLC6A15 WILD-TYPE
  COLON ADENOCARCINOMA                         4               124
  COLON MUCINOUS ADENOCARCINOMA                3                21
  RECTAL ADENOCARCINOMA                        3                54
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D280V6, multiclass
    clus
vv   SLC6A15 MUTATED SLC6A15 WILD-TYPE
  T1               1                 8
  T2               2                45
  T3               5               145
  T4               2                15
D280V7, multiclass
    clus
vv   SLC6A15 MUTATED SLC6A15 WILD-TYPE
  N0               7               127
  N1               3                41
  N2               0                46
D280V8, multiclass
     clus
vv    SLC6A15 MUTATED SLC6A15 WILD-TYPE
  M0                9               180
  M1                1                30
  M1A               0                 1
D280V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC6A15 MUTATED     10    0
  SLC6A15 WILD-TYPE  206    8
     clus
vv    SLC6A15 MUTATED SLC6A15 WILD-TYPE
  NO                0                 8
  YES              10               206

Clustering(281) Variable = C22ORF40 MUTATION ANALYSIS
D281V1, survival
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C22ORF40 WILD-TYPE"   "C22ORF40 MUTATED" "C22ORF40 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C22ORF40 WILD-TYPE"   "C22ORF40 MUTATED" "C22ORF40 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C22ORF40 WILD-TYPE"   "C22ORF40 MUTATED" "C22ORF40 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
[1] "Remove cluster labels:" "C22ORF40 MUTATED"      
clus
  C22ORF40 MUTATED C22ORF40 WILD-TYPE 
                 1                119 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3818         TCGA-AA-3837 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3846 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-3848         TCGA-AA-3854         TCGA-AA-3877 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-3939         TCGA-AA-3941         TCGA-AA-3947 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-3949         TCGA-AA-3952         TCGA-AA-3966 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-3975         TCGA-AA-3977         TCGA-AA-3986 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01P         TCGA-AA-A01Q 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A01R         TCGA-AA-A01S         TCGA-AA-A01T 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A01V         TCGA-AA-A01X         TCGA-AA-A01Z 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A024         TCGA-AA-A029         TCGA-AA-A02F 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A02H         TCGA-AA-A02J         TCGA-AA-A02O 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AA-A02Y         TCGA-AA-A03F 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AA-A03J         TCGA-AY-4070         TCGA-AY-4071 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AF-2689         TCGA-AF-2691         TCGA-AF-2692 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AF-3400         TCGA-AF-3913         TCGA-AG-3581 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3587 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-3599         TCGA-AG-3726         TCGA-AG-3727 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3887         TCGA-AG-3892 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3894         TCGA-AG-3999 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-4001         TCGA-AG-4007         TCGA-AG-4008 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A01W         TCGA-AG-A01Y 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-A020         TCGA-AG-A025         TCGA-AG-A026 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02N         TCGA-AG-A02X 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
        TCGA-AG-A032         TCGA-AG-A036 
"C22ORF40 WILD-TYPE" "C22ORF40 WILD-TYPE" 
D281V2, continuous
D281V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C22ORF40 MUTATED      3    0
  C22ORF40 WILD-TYPE  151   68
        clus
vv       C22ORF40 MUTATED C22ORF40 WILD-TYPE
  COLON                 3                151
  RECTUM                0                 68
D281V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C22ORF40 MUTATED      1    2
  C22ORF40 WILD-TYPE  116  105
        clus
vv       C22ORF40 MUTATED C22ORF40 WILD-TYPE
  FEMALE                2                105
  MALE                  1                116
D281V5, multiclass
                                clus
vv                               C22ORF40 MUTATED C22ORF40 WILD-TYPE
  COLON ADENOCARCINOMA                          2                126
  COLON MUCINOUS ADENOCARCINOMA                 1                 23
  RECTAL ADENOCARCINOMA                         0                 57
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
D281V6, multiclass
    clus
vv   C22ORF40 MUTATED C22ORF40 WILD-TYPE
  T1                0                  9
  T2                0                 47
  T3                2                148
  T4                1                 16
D281V7, multiclass
    clus
vv   C22ORF40 MUTATED C22ORF40 WILD-TYPE
  N0                2                132
  N1                0                 44
  N2                1                 45
D281V8, multiclass
     clus
vv    C22ORF40 MUTATED C22ORF40 WILD-TYPE
  M0                 3                186
  M1                 0                 31
  M1A                0                  1
D281V9, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C22ORF40 MUTATED      3    0
  C22ORF40 WILD-TYPE  213    8
     clus
vv    C22ORF40 MUTATED C22ORF40 WILD-TYPE
  NO                 0                  8
  YES                3                213

Clustering(282) Variable = C12ORF29 MUTATION ANALYSIS
D282V1, survival
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"C12ORF29 WILD-TYPE"   "C12ORF29 MUTATED" "C12ORF29 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"C12ORF29 WILD-TYPE"   "C12ORF29 MUTATED" "C12ORF29 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"C12ORF29 WILD-TYPE"   "C12ORF29 MUTATED" "C12ORF29 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
[1] "Remove cluster labels:" "C12ORF29 MUTATED"      
clus
  C12ORF29 MUTATED C12ORF29 WILD-TYPE 
                 1                119 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A008         TCGA-AG-A00C 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A01W         TCGA-AG-A01Y 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-A020         TCGA-AG-A025         TCGA-AG-A026 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02N         TCGA-AG-A02X 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
        TCGA-AG-A032         TCGA-AG-A036 
"C12ORF29 WILD-TYPE" "C12ORF29 WILD-TYPE" 
D282V2, continuous
D282V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C12ORF29 MUTATED      2    1
  C12ORF29 WILD-TYPE  152   67
        clus
vv       C12ORF29 MUTATED C12ORF29 WILD-TYPE
  COLON                 2                152
  RECTUM                1                 67
D282V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C12ORF29 MUTATED      2    1
  C12ORF29 WILD-TYPE  115  106
        clus
vv       C12ORF29 MUTATED C12ORF29 WILD-TYPE
  FEMALE                1                106
  MALE                  2                115
D282V5, multiclass
                                clus
vv                               C12ORF29 MUTATED C12ORF29 WILD-TYPE
  COLON ADENOCARCINOMA                          2                126
  COLON MUCINOUS ADENOCARCINOMA                 0                 24
  RECTAL ADENOCARCINOMA                         1                 56
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
D282V6, multiclass
    clus
vv   C12ORF29 MUTATED C12ORF29 WILD-TYPE
  T1                0                  9
  T2                2                 45
  T3                0                150
  T4                1                 16
D282V7, multiclass
    clus
vv   C12ORF29 MUTATED C12ORF29 WILD-TYPE
  N0                2                132
  N1                1                 43
  N2                0                 46
D282V8, multiclass
     clus
vv    C12ORF29 MUTATED C12ORF29 WILD-TYPE
  M0                 2                187
  M1                 1                 30
  M1A                0                  1
D282V9, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C12ORF29 MUTATED      3    0
  C12ORF29 WILD-TYPE  213    8
     clus
vv    C12ORF29 MUTATED C12ORF29 WILD-TYPE
  NO                 0                  8
  YES                3                213

Clustering(283) Variable = CCDC76 MUTATION ANALYSIS
D283V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE"   "CCDC76 MUTATED" "CCDC76 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE"   "CCDC76 MUTATED" "CCDC76 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE"   "CCDC76 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "CCDC76 MUTATED" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE"   "CCDC76 MUTATED" "CCDC76 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE"   "CCDC76 MUTATED" "CCDC76 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE"   "CCDC76 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "CCDC76 MUTATED" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE"   "CCDC76 MUTATED" "CCDC76 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE"   "CCDC76 MUTATED" "CCDC76 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE"   "CCDC76 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "CCDC76 MUTATED" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" "CCDC76 WILD-TYPE" 
[1] "hr="     "9300000"
D283V2, continuous
D283V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CCDC76 MUTATED      4    0
  CCDC76 WILD-TYPE  150   68
        clus
vv       CCDC76 MUTATED CCDC76 WILD-TYPE
  COLON               4              150
  RECTUM              0               68
D283V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CCDC76 MUTATED      1    3
  CCDC76 WILD-TYPE  116  104
        clus
vv       CCDC76 MUTATED CCDC76 WILD-TYPE
  FEMALE              3              104
  MALE                1              116
D283V5, multiclass
                                clus
vv                               CCDC76 MUTATED CCDC76 WILD-TYPE
  COLON ADENOCARCINOMA                        3              125
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       0               57
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D283V6, multiclass
    clus
vv   CCDC76 MUTATED CCDC76 WILD-TYPE
  T1              0                9
  T2              1               46
  T3              1              149
  T4              2               15
D283V7, multiclass
    clus
vv   CCDC76 MUTATED CCDC76 WILD-TYPE
  N0              4              130
  N1              0               44
  N2              0               46
D283V8, multiclass
     clus
vv    CCDC76 MUTATED CCDC76 WILD-TYPE
  M0               3              186
  M1               0               31
  M1A              0                1
D283V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CCDC76 MUTATED      4    0
  CCDC76 WILD-TYPE  212    8
     clus
vv    CCDC76 MUTATED CCDC76 WILD-TYPE
  NO               0                8
  YES              4              212

Clustering(284) Variable = UGGT2 MUTATION ANALYSIS
D284V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE"   "UGGT2 MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE"   "UGGT2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "UGGT2 MUTATED" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE"   "UGGT2 MUTATED" "UGGT2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"UGGT2 WILD-TYPE"   "UGGT2 MUTATED" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
  "UGGT2 MUTATED" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "UGGT2 MUTATED" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE"   "UGGT2 MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE"   "UGGT2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "UGGT2 MUTATED" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE"   "UGGT2 MUTATED" "UGGT2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"UGGT2 WILD-TYPE"   "UGGT2 MUTATED" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
  "UGGT2 MUTATED" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "UGGT2 MUTATED" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE"   "UGGT2 MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE"   "UGGT2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "UGGT2 MUTATED" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE"   "UGGT2 MUTATED" "UGGT2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"UGGT2 WILD-TYPE"   "UGGT2 MUTATED" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
  "UGGT2 MUTATED" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "UGGT2 MUTATED" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
[1] "hr=" "4"  
D284V2, continuous
D284V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  UGGT2 MUTATED      9    3
  UGGT2 WILD-TYPE  145   65
        clus
vv       UGGT2 MUTATED UGGT2 WILD-TYPE
  COLON              9             145
  RECTUM             3              65
D284V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  UGGT2 MUTATED      4    8
  UGGT2 WILD-TYPE  113   99
        clus
vv       UGGT2 MUTATED UGGT2 WILD-TYPE
  FEMALE             8              99
  MALE               4             113
D284V5, multiclass
                                clus
vv                               UGGT2 MUTATED UGGT2 WILD-TYPE
  COLON ADENOCARCINOMA                       9             119
  COLON MUCINOUS ADENOCARCINOMA              0              24
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             2               6
D284V6, multiclass
    clus
vv   UGGT2 MUTATED UGGT2 WILD-TYPE
  T1             1               8
  T2             2              45
  T3             8             142
  T4             1              16
D284V7, multiclass
    clus
vv   UGGT2 MUTATED UGGT2 WILD-TYPE
  N0             6             128
  N1             1              43
  N2             5              41
D284V8, multiclass
     clus
vv    UGGT2 MUTATED UGGT2 WILD-TYPE
  M0              8             181
  M1              3              28
  M1A             0               1
D284V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  UGGT2 MUTATED     11    1
  UGGT2 WILD-TYPE  205    7
     clus
vv    UGGT2 MUTATED UGGT2 WILD-TYPE
  NO              1               7
  YES            11             205

Clustering(285) Variable = TOX MUTATION ANALYSIS
D285V1, survival
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"TOX WILD-TYPE" "TOX WILD-TYPE"   "TOX MUTATED" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "TOX MUTATED" "TOX WILD-TYPE" "TOX WILD-TYPE"   "TOX MUTATED" "TOX WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"TOX WILD-TYPE" "TOX WILD-TYPE"   "TOX MUTATED" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"TOX WILD-TYPE" "TOX WILD-TYPE"   "TOX MUTATED" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "TOX MUTATED" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"TOX WILD-TYPE" "TOX WILD-TYPE"   "TOX MUTATED" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "TOX MUTATED" "TOX WILD-TYPE" "TOX WILD-TYPE"   "TOX MUTATED" "TOX WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"TOX WILD-TYPE" "TOX WILD-TYPE"   "TOX MUTATED" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"TOX WILD-TYPE" "TOX WILD-TYPE"   "TOX MUTATED" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "TOX MUTATED" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"TOX WILD-TYPE" "TOX WILD-TYPE"   "TOX MUTATED" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "TOX MUTATED" "TOX WILD-TYPE" "TOX WILD-TYPE"   "TOX MUTATED" "TOX WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"TOX WILD-TYPE" "TOX WILD-TYPE"   "TOX MUTATED" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"TOX WILD-TYPE" "TOX WILD-TYPE"   "TOX MUTATED" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "TOX MUTATED" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" "TOX WILD-TYPE" 
[1] "hr="     "2.7e+07"
D285V2, continuous
D285V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  TOX MUTATED      6    2
  TOX WILD-TYPE  148   66
        clus
vv       TOX MUTATED TOX WILD-TYPE
  COLON            6           148
  RECTUM           2            66
D285V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  TOX MUTATED      4    4
  TOX WILD-TYPE  113  103
        clus
vv       TOX MUTATED TOX WILD-TYPE
  FEMALE           4           103
  MALE             4           113
D285V5, multiclass
                                clus
vv                               TOX MUTATED TOX WILD-TYPE
  COLON ADENOCARCINOMA                     5           123
  COLON MUCINOUS ADENOCARCINOMA            1            23
  RECTAL ADENOCARCINOMA                    2            55
  RECTAL MUCINOUS ADENOCARCINOMA           0             8
D285V6, multiclass
    clus
vv   TOX MUTATED TOX WILD-TYPE
  T1           0             9
  T2           2            45
  T3           4           146
  T4           2            15
D285V7, multiclass
    clus
vv   TOX MUTATED TOX WILD-TYPE
  N0           7           127
  N1           1            43
  N2           0            46
D285V8, multiclass
     clus
vv    TOX MUTATED TOX WILD-TYPE
  M0            7           182
  M1            0            31
  M1A           0             1
D285V9, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  TOX MUTATED      8    0
  TOX WILD-TYPE  208    8
     clus
vv    TOX MUTATED TOX WILD-TYPE
  NO            0             8
  YES           8           208

Clustering(286) Variable = COL11A1 MUTATION ANALYSIS
D286V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
  "COL11A1 MUTATED"   "COL11A1 MUTATED"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "COL11A1 MUTATED"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
  "COL11A1 MUTATED"   "COL11A1 MUTATED"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "COL11A1 MUTATED"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
  "COL11A1 MUTATED"   "COL11A1 MUTATED"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "COL11A1 MUTATED"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
[1] "hr=" "1.4"
D286V2, continuous
D286V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL11A1 MUTATED     14    4
  COL11A1 WILD-TYPE  140   64
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  COLON               14               140
  RECTUM               4                64
D286V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL11A1 MUTATED      7   11
  COL11A1 WILD-TYPE  110   96
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  FEMALE              11                96
  MALE                 7               110
D286V5, multiclass
                                clus
vv                               COL11A1 MUTATED COL11A1 WILD-TYPE
  COLON ADENOCARCINOMA                        12               116
  COLON MUCINOUS ADENOCARCINOMA                2                22
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D286V6, multiclass
    clus
vv   COL11A1 MUTATED COL11A1 WILD-TYPE
  T1               1                 8
  T2               3                44
  T3              10               140
  T4               4                13
D286V7, multiclass
    clus
vv   COL11A1 MUTATED COL11A1 WILD-TYPE
  N0              14               120
  N1               2                42
  N2               2                44
D286V8, multiclass
     clus
vv    COL11A1 MUTATED COL11A1 WILD-TYPE
  M0               16               173
  M1                1                30
  M1A               0                 1
D286V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL11A1 MUTATED     18    0
  COL11A1 WILD-TYPE  198    8
     clus
vv    COL11A1 MUTATED COL11A1 WILD-TYPE
  NO                0                 8
  YES              18               198

Clustering(287) Variable = DPY19L1 MUTATION ANALYSIS
D287V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"DPY19L1 WILD-TYPE"   "DPY19L1 MUTATED" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"DPY19L1 WILD-TYPE"   "DPY19L1 MUTATED" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "DPY19L1 MUTATED" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "DPY19L1 MUTATED" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"DPY19L1 WILD-TYPE"   "DPY19L1 MUTATED" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"DPY19L1 WILD-TYPE"   "DPY19L1 MUTATED" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "DPY19L1 MUTATED" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "DPY19L1 MUTATED" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"DPY19L1 WILD-TYPE"   "DPY19L1 MUTATED" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"DPY19L1 WILD-TYPE"   "DPY19L1 MUTATED" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "DPY19L1 MUTATED" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "DPY19L1 MUTATED" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
[1] "hr=" "2.3"
D287V2, continuous
D287V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DPY19L1 MUTATED      3    2
  DPY19L1 WILD-TYPE  151   66
        clus
vv       DPY19L1 MUTATED DPY19L1 WILD-TYPE
  COLON                3               151
  RECTUM               2                66
D287V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DPY19L1 MUTATED      2    3
  DPY19L1 WILD-TYPE  115  104
        clus
vv       DPY19L1 MUTATED DPY19L1 WILD-TYPE
  FEMALE               3               104
  MALE                 2               115
D287V5, multiclass
                                clus
vv                               DPY19L1 MUTATED DPY19L1 WILD-TYPE
  COLON ADENOCARCINOMA                         2               126
  COLON MUCINOUS ADENOCARCINOMA                1                23
  RECTAL ADENOCARCINOMA                        1                56
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D287V6, multiclass
    clus
vv   DPY19L1 MUTATED DPY19L1 WILD-TYPE
  T1               0                 9
  T2               1                46
  T3               2               148
  T4               2                15
D287V7, multiclass
    clus
vv   DPY19L1 MUTATED DPY19L1 WILD-TYPE
  N0               5               129
  N1               0                44
  N2               0                46
D287V8, multiclass
     clus
vv    DPY19L1 MUTATED DPY19L1 WILD-TYPE
  M0                5               184
  M1                0                31
  M1A               0                 1
D287V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DPY19L1 MUTATED      5    0
  DPY19L1 WILD-TYPE  211    8
     clus
vv    DPY19L1 MUTATED DPY19L1 WILD-TYPE
  NO                0                 8
  YES               5               211

Clustering(288) Variable = ERBB3 MUTATION ANALYSIS
D288V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE"   "ERBB3 MUTATED" "ERBB3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE"   "ERBB3 MUTATED" "ERBB3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "ERBB3 MUTATED" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ERBB3 MUTATED" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ERBB3 WILD-TYPE"   "ERBB3 MUTATED" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "ERBB3 MUTATED" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE"   "ERBB3 MUTATED" "ERBB3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE"   "ERBB3 MUTATED" "ERBB3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "ERBB3 MUTATED" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ERBB3 MUTATED" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ERBB3 WILD-TYPE"   "ERBB3 MUTATED" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "ERBB3 MUTATED" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE"   "ERBB3 MUTATED" "ERBB3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE"   "ERBB3 MUTATED" "ERBB3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "ERBB3 MUTATED" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ERBB3 MUTATED" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ERBB3 WILD-TYPE"   "ERBB3 MUTATED" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "ERBB3 MUTATED" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
[1] "hr="     "7.3e+07"
D288V2, continuous
D288V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ERBB3 MUTATED     11    3
  ERBB3 WILD-TYPE  143   65
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  COLON             11             143
  RECTUM             3              65
D288V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ERBB3 MUTATED      7    7
  ERBB3 WILD-TYPE  110  100
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  FEMALE             7             100
  MALE               7             110
D288V5, multiclass
                                clus
vv                               ERBB3 MUTATED ERBB3 WILD-TYPE
  COLON ADENOCARCINOMA                      11             117
  COLON MUCINOUS ADENOCARCINOMA              0              24
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D288V6, multiclass
    clus
vv   ERBB3 MUTATED ERBB3 WILD-TYPE
  T1             0               9
  T2             3              44
  T3             9             141
  T4             2              15
D288V7, multiclass
    clus
vv   ERBB3 MUTATED ERBB3 WILD-TYPE
  N0             9             125
  N1             3              41
  N2             2              44
D288V8, multiclass
     clus
vv    ERBB3 MUTATED ERBB3 WILD-TYPE
  M0             13             176
  M1              1              30
  M1A             0               1
D288V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ERBB3 MUTATED     14    0
  ERBB3 WILD-TYPE  202    8
     clus
vv    ERBB3 MUTATED ERBB3 WILD-TYPE
  NO              0               8
  YES            14             202

Clustering(289) Variable = PCDH18 MUTATION ANALYSIS
D289V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE"   "PCDH18 MUTATED" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE"   "PCDH18 MUTATED" "PCDH18 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PCDH18 WILD-TYPE"   "PCDH18 MUTATED" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE"   "PCDH18 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE"   "PCDH18 MUTATED" "PCDH18 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDH18 WILD-TYPE"   "PCDH18 MUTATED" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDH18 MUTATED" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDH18 WILD-TYPE"   "PCDH18 MUTATED" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDH18 WILD-TYPE"   "PCDH18 MUTATED" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDH18 MUTATED" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE"   "PCDH18 MUTATED" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE"   "PCDH18 MUTATED" "PCDH18 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PCDH18 WILD-TYPE"   "PCDH18 MUTATED" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE"   "PCDH18 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE"   "PCDH18 MUTATED" "PCDH18 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDH18 WILD-TYPE"   "PCDH18 MUTATED" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDH18 MUTATED" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDH18 WILD-TYPE"   "PCDH18 MUTATED" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDH18 WILD-TYPE"   "PCDH18 MUTATED" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDH18 MUTATED" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE"   "PCDH18 MUTATED" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE"   "PCDH18 MUTATED" "PCDH18 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PCDH18 WILD-TYPE"   "PCDH18 MUTATED" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE"   "PCDH18 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE"   "PCDH18 MUTATED" "PCDH18 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDH18 WILD-TYPE"   "PCDH18 MUTATED" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDH18 MUTATED" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDH18 WILD-TYPE"   "PCDH18 MUTATED" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDH18 WILD-TYPE"   "PCDH18 MUTATED" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDH18 MUTATED" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" "PCDH18 WILD-TYPE" 
[1] "hr=" "1.1"
D289V2, continuous
D289V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDH18 MUTATED     12    2
  PCDH18 WILD-TYPE  142   66
        clus
vv       PCDH18 MUTATED PCDH18 WILD-TYPE
  COLON              12              142
  RECTUM              2               66
D289V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDH18 MUTATED      6    8
  PCDH18 WILD-TYPE  111   99
        clus
vv       PCDH18 MUTATED PCDH18 WILD-TYPE
  FEMALE              8               99
  MALE                6              111
D289V5, multiclass
                                clus
vv                               PCDH18 MUTATED PCDH18 WILD-TYPE
  COLON ADENOCARCINOMA                        8              120
  COLON MUCINOUS ADENOCARCINOMA               4               20
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D289V6, multiclass
    clus
vv   PCDH18 MUTATED PCDH18 WILD-TYPE
  T1              1                8
  T2              1               46
  T3              9              141
  T4              3               14
D289V7, multiclass
    clus
vv   PCDH18 MUTATED PCDH18 WILD-TYPE
  N0              9              125
  N1              2               42
  N2              3               43
D289V8, multiclass
     clus
vv    PCDH18 MUTATED PCDH18 WILD-TYPE
  M0              14              175
  M1               0               31
  M1A              0                1
D289V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDH18 MUTATED     13    1
  PCDH18 WILD-TYPE  203    7
     clus
vv    PCDH18 MUTATED PCDH18 WILD-TYPE
  NO               1                7
  YES             13              203

Clustering(290) Variable = CFHR5 MUTATION ANALYSIS
D290V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CFHR5 WILD-TYPE"   "CFHR5 MUTATED" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CFHR5 WILD-TYPE"   "CFHR5 MUTATED" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE"   "CFHR5 MUTATED" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CFHR5 WILD-TYPE"   "CFHR5 MUTATED" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CFHR5 WILD-TYPE"   "CFHR5 MUTATED" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE"   "CFHR5 MUTATED" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CFHR5 WILD-TYPE"   "CFHR5 MUTATED" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CFHR5 WILD-TYPE"   "CFHR5 MUTATED" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE"   "CFHR5 MUTATED" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
[1] "hr=" "1.8"
D290V2, continuous
D290V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CFHR5 MUTATED      3    3
  CFHR5 WILD-TYPE  151   65
        clus
vv       CFHR5 MUTATED CFHR5 WILD-TYPE
  COLON              3             151
  RECTUM             3              65
D290V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CFHR5 MUTATED      3    3
  CFHR5 WILD-TYPE  114  104
        clus
vv       CFHR5 MUTATED CFHR5 WILD-TYPE
  FEMALE             3             104
  MALE               3             114
D290V5, multiclass
                                clus
vv                               CFHR5 MUTATED CFHR5 WILD-TYPE
  COLON ADENOCARCINOMA                       2             126
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D290V6, multiclass
    clus
vv   CFHR5 MUTATED CFHR5 WILD-TYPE
  T1             0               9
  T2             0              47
  T3             5             145
  T4             1              16
D290V7, multiclass
    clus
vv   CFHR5 MUTATED CFHR5 WILD-TYPE
  N0             6             128
  N1             0              44
  N2             0              46
D290V8, multiclass
     clus
vv    CFHR5 MUTATED CFHR5 WILD-TYPE
  M0              6             183
  M1              0              31
  M1A             0               1
D290V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CFHR5 MUTATED      6    0
  CFHR5 WILD-TYPE  210    8
     clus
vv    CFHR5 MUTATED CFHR5 WILD-TYPE
  NO              0               8
  YES             6             210

Clustering(291) Variable = UGT2A1 MUTATION ANALYSIS
D291V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
  "UGT2A1 MUTATED" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE"   "UGT2A1 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "UGT2A1 MUTATED" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"UGT2A1 WILD-TYPE"   "UGT2A1 MUTATED" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
  "UGT2A1 MUTATED" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE"   "UGT2A1 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "UGT2A1 MUTATED" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"UGT2A1 WILD-TYPE"   "UGT2A1 MUTATED" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
  "UGT2A1 MUTATED" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE"   "UGT2A1 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "UGT2A1 MUTATED" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"UGT2A1 WILD-TYPE"   "UGT2A1 MUTATED" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" "UGT2A1 WILD-TYPE" 
[1] "hr=" "2.6"
D291V2, continuous
D291V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UGT2A1 MUTATED      7    0
  UGT2A1 WILD-TYPE  147   68
        clus
vv       UGT2A1 MUTATED UGT2A1 WILD-TYPE
  COLON               7              147
  RECTUM              0               68
D291V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UGT2A1 MUTATED      4    3
  UGT2A1 WILD-TYPE  113  104
        clus
vv       UGT2A1 MUTATED UGT2A1 WILD-TYPE
  FEMALE              3              104
  MALE                4              113
D291V5, multiclass
                                clus
vv                               UGT2A1 MUTATED UGT2A1 WILD-TYPE
  COLON ADENOCARCINOMA                        5              123
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       0               57
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D291V6, multiclass
    clus
vv   UGT2A1 MUTATED UGT2A1 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              3              147
  T4              2               15
D291V7, multiclass
    clus
vv   UGT2A1 MUTATED UGT2A1 WILD-TYPE
  N0              5              129
  N1              0               44
  N2              2               44
D291V8, multiclass
     clus
vv    UGT2A1 MUTATED UGT2A1 WILD-TYPE
  M0               6              183
  M1               0               31
  M1A              0                1
D291V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UGT2A1 MUTATED      7    0
  UGT2A1 WILD-TYPE  209    8
     clus
vv    UGT2A1 MUTATED UGT2A1 WILD-TYPE
  NO               0                8
  YES              7              209

Clustering(292) Variable = ZNF99 MUTATION ANALYSIS
D292V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE"   "ZNF99 MUTATED" "ZNF99 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE"   "ZNF99 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE"   "ZNF99 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZNF99 WILD-TYPE"   "ZNF99 MUTATED" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ZNF99 MUTATED" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE"   "ZNF99 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ZNF99 WILD-TYPE"   "ZNF99 MUTATED"   "ZNF99 MUTATED" "ZNF99 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ZNF99 MUTATED" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE"   "ZNF99 MUTATED" "ZNF99 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE"   "ZNF99 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE"   "ZNF99 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZNF99 WILD-TYPE"   "ZNF99 MUTATED" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ZNF99 MUTATED" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE"   "ZNF99 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ZNF99 WILD-TYPE"   "ZNF99 MUTATED"   "ZNF99 MUTATED" "ZNF99 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ZNF99 MUTATED" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE"   "ZNF99 MUTATED" "ZNF99 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE"   "ZNF99 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE"   "ZNF99 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZNF99 WILD-TYPE"   "ZNF99 MUTATED" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ZNF99 MUTATED" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE"   "ZNF99 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ZNF99 WILD-TYPE"   "ZNF99 MUTATED"   "ZNF99 MUTATED" "ZNF99 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ZNF99 MUTATED" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
[1] "hr=" "3.2"
D292V2, continuous
D292V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZNF99 MUTATED      8    3
  ZNF99 WILD-TYPE  146   65
        clus
vv       ZNF99 MUTATED ZNF99 WILD-TYPE
  COLON              8             146
  RECTUM             3              65
D292V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZNF99 MUTATED      6    5
  ZNF99 WILD-TYPE  111  102
        clus
vv       ZNF99 MUTATED ZNF99 WILD-TYPE
  FEMALE             5             102
  MALE               6             111
D292V5, multiclass
                                clus
vv                               ZNF99 MUTATED ZNF99 WILD-TYPE
  COLON ADENOCARCINOMA                       5             123
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D292V6, multiclass
    clus
vv   ZNF99 MUTATED ZNF99 WILD-TYPE
  T1             1               8
  T2             2              45
  T3             6             144
  T4             2              15
D292V7, multiclass
    clus
vv   ZNF99 MUTATED ZNF99 WILD-TYPE
  N0             8             126
  N1             2              42
  N2             1              45
D292V8, multiclass
     clus
vv    ZNF99 MUTATED ZNF99 WILD-TYPE
  M0             10             179
  M1              0              31
  M1A             0               1
D292V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZNF99 MUTATED     11    0
  ZNF99 WILD-TYPE  205    8
     clus
vv    ZNF99 MUTATED ZNF99 WILD-TYPE
  NO              0               8
  YES            11             205

Clustering(293) Variable = ARL2BP MUTATION ANALYSIS
D293V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ARL2BP WILD-TYPE"   "ARL2BP MUTATED" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ARL2BP MUTATED" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ARL2BP WILD-TYPE"   "ARL2BP MUTATED" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ARL2BP WILD-TYPE"   "ARL2BP MUTATED" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ARL2BP MUTATED" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ARL2BP WILD-TYPE"   "ARL2BP MUTATED" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ARL2BP WILD-TYPE"   "ARL2BP MUTATED" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ARL2BP MUTATED" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ARL2BP WILD-TYPE"   "ARL2BP MUTATED" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
[1] "hr="     "2.6e+07"
D293V2, continuous
D293V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARL2BP MUTATED      3    2
  ARL2BP WILD-TYPE  151   66
        clus
vv       ARL2BP MUTATED ARL2BP WILD-TYPE
  COLON               3              151
  RECTUM              2               66
D293V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARL2BP MUTATED      3    2
  ARL2BP WILD-TYPE  114  105
        clus
vv       ARL2BP MUTATED ARL2BP WILD-TYPE
  FEMALE              2              105
  MALE                3              114
D293V5, multiclass
                                clus
vv                               ARL2BP MUTATED ARL2BP WILD-TYPE
  COLON ADENOCARCINOMA                        2              126
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D293V6, multiclass
    clus
vv   ARL2BP MUTATED ARL2BP WILD-TYPE
  T1              0                9
  T2              3               44
  T3              2              148
  T4              0               17
D293V7, multiclass
    clus
vv   ARL2BP MUTATED ARL2BP WILD-TYPE
  N0              4              130
  N1              0               44
  N2              1               45
D293V8, multiclass
     clus
vv    ARL2BP MUTATED ARL2BP WILD-TYPE
  M0               5              184
  M1               0               31
  M1A              0                1
D293V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARL2BP MUTATED      5    0
  ARL2BP WILD-TYPE  211    8
     clus
vv    ARL2BP MUTATED ARL2BP WILD-TYPE
  NO               0                8
  YES              5              211

Clustering(294) Variable = TIGIT MUTATION ANALYSIS
D294V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE"   "TIGIT MUTATED" "TIGIT WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE"   "TIGIT MUTATED" "TIGIT WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TIGIT MUTATED" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE"   "TIGIT MUTATED" "TIGIT WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE"   "TIGIT MUTATED" "TIGIT WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TIGIT MUTATED" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE"   "TIGIT MUTATED" "TIGIT WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE"   "TIGIT MUTATED" "TIGIT WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TIGIT MUTATED" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" "TIGIT WILD-TYPE" 
[1] "hr="     "2.6e+07"
D294V2, continuous
D294V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TIGIT MUTATED      4    0
  TIGIT WILD-TYPE  150   68
        clus
vv       TIGIT MUTATED TIGIT WILD-TYPE
  COLON              4             150
  RECTUM             0              68
D294V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TIGIT MUTATED      2    2
  TIGIT WILD-TYPE  115  105
        clus
vv       TIGIT MUTATED TIGIT WILD-TYPE
  FEMALE             2             105
  MALE               2             115
D294V5, multiclass
                                clus
vv                               TIGIT MUTATED TIGIT WILD-TYPE
  COLON ADENOCARCINOMA                       3             125
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      0              57
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D294V6, multiclass
    clus
vv   TIGIT MUTATED TIGIT WILD-TYPE
  T1             0               9
  T2             0              47
  T3             2             148
  T4             2              15
D294V7, multiclass
    clus
vv   TIGIT MUTATED TIGIT WILD-TYPE
  N0             2             132
  N1             1              43
  N2             1              45
D294V8, multiclass
     clus
vv    TIGIT MUTATED TIGIT WILD-TYPE
  M0              3             186
  M1              1              30
  M1A             0               1
D294V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TIGIT MUTATED      4    0
  TIGIT WILD-TYPE  212    8
     clus
vv    TIGIT MUTATED TIGIT WILD-TYPE
  NO              0               8
  YES             4             212

Clustering(295) Variable = ZNF334 MUTATION ANALYSIS
D295V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE"   "ZNF334 MUTATED" "ZNF334 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE"   "ZNF334 MUTATED" "ZNF334 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE"   "ZNF334 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF334 MUTATED" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF334 WILD-TYPE"   "ZNF334 MUTATED" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE"   "ZNF334 MUTATED" "ZNF334 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE"   "ZNF334 MUTATED" "ZNF334 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE"   "ZNF334 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF334 MUTATED" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF334 WILD-TYPE"   "ZNF334 MUTATED" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE"   "ZNF334 MUTATED" "ZNF334 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE"   "ZNF334 MUTATED" "ZNF334 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE"   "ZNF334 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF334 MUTATED" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF334 WILD-TYPE"   "ZNF334 MUTATED" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" "ZNF334 WILD-TYPE" 
[1] "hr="     "2.5e+07"
D295V2, continuous
D295V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF334 MUTATED      7    1
  ZNF334 WILD-TYPE  147   67
        clus
vv       ZNF334 MUTATED ZNF334 WILD-TYPE
  COLON               7              147
  RECTUM              1               67
D295V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF334 MUTATED      2    6
  ZNF334 WILD-TYPE  115  101
        clus
vv       ZNF334 MUTATED ZNF334 WILD-TYPE
  FEMALE              6              101
  MALE                2              115
D295V5, multiclass
                                clus
vv                               ZNF334 MUTATED ZNF334 WILD-TYPE
  COLON ADENOCARCINOMA                        5              123
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D295V6, multiclass
    clus
vv   ZNF334 MUTATED ZNF334 WILD-TYPE
  T1              1                8
  T2              4               43
  T3              1              149
  T4              2               15
D295V7, multiclass
    clus
vv   ZNF334 MUTATED ZNF334 WILD-TYPE
  N0              7              127
  N1              1               43
  N2              0               46
D295V8, multiclass
     clus
vv    ZNF334 MUTATED ZNF334 WILD-TYPE
  M0               7              182
  M1               0               31
  M1A              0                1
D295V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF334 MUTATED      8    0
  ZNF334 WILD-TYPE  208    8
     clus
vv    ZNF334 MUTATED ZNF334 WILD-TYPE
  NO               0                8
  YES              8              208

Clustering(296) Variable = SLCO6A1 MUTATION ANALYSIS
D296V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE"   "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE"   "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLCO6A1 WILD-TYPE"   "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE"   "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE"   "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE"   "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLCO6A1 WILD-TYPE"   "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE"   "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE"   "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE"   "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLCO6A1 WILD-TYPE"   "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE"   "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
[1] "hr=" "2.5"
D296V2, continuous
D296V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLCO6A1 MUTATED      8    2
  SLCO6A1 WILD-TYPE  146   66
        clus
vv       SLCO6A1 MUTATED SLCO6A1 WILD-TYPE
  COLON                8               146
  RECTUM               2                66
D296V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLCO6A1 MUTATED      3    7
  SLCO6A1 WILD-TYPE  114  100
        clus
vv       SLCO6A1 MUTATED SLCO6A1 WILD-TYPE
  FEMALE               7               100
  MALE                 3               114
D296V5, multiclass
                                clus
vv                               SLCO6A1 MUTATED SLCO6A1 WILD-TYPE
  COLON ADENOCARCINOMA                         4               124
  COLON MUCINOUS ADENOCARCINOMA                3                21
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D296V6, multiclass
    clus
vv   SLCO6A1 MUTATED SLCO6A1 WILD-TYPE
  T1               0                 9
  T2               2                45
  T3               5               145
  T4               3                14
D296V7, multiclass
    clus
vv   SLCO6A1 MUTATED SLCO6A1 WILD-TYPE
  N0               9               125
  N1               1                43
  N2               0                46
D296V8, multiclass
     clus
vv    SLCO6A1 MUTATED SLCO6A1 WILD-TYPE
  M0               10               179
  M1                0                31
  M1A               0                 1
D296V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLCO6A1 MUTATED     10    0
  SLCO6A1 WILD-TYPE  206    8
     clus
vv    SLCO6A1 MUTATED SLCO6A1 WILD-TYPE
  NO                0                 8
  YES              10               206

Clustering(297) Variable = CDC27 MUTATION ANALYSIS
D297V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE"   "CDC27 MUTATED" "CDC27 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "CDC27 MUTATED" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE"   "CDC27 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "CDC27 MUTATED" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CDC27 MUTATED" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE"   "CDC27 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "CDC27 MUTATED" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CDC27 WILD-TYPE"   "CDC27 MUTATED" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CDC27 MUTATED" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE"   "CDC27 MUTATED" "CDC27 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "CDC27 MUTATED" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE"   "CDC27 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "CDC27 MUTATED" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CDC27 MUTATED" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE"   "CDC27 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "CDC27 MUTATED" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CDC27 WILD-TYPE"   "CDC27 MUTATED" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CDC27 MUTATED" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE"   "CDC27 MUTATED" "CDC27 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "CDC27 MUTATED" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE"   "CDC27 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "CDC27 MUTATED" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CDC27 MUTATED" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE"   "CDC27 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "CDC27 MUTATED" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CDC27 WILD-TYPE"   "CDC27 MUTATED" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CDC27 MUTATED" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
[1] "hr=" "1.1"
D297V2, continuous
D297V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDC27 MUTATED      8    2
  CDC27 WILD-TYPE  146   66
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  COLON              8             146
  RECTUM             2              66
D297V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDC27 MUTATED      2    8
  CDC27 WILD-TYPE  115   99
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  FEMALE             8              99
  MALE               2             115
D297V5, multiclass
                                clus
vv                               CDC27 MUTATED CDC27 WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D297V6, multiclass
    clus
vv   CDC27 MUTATED CDC27 WILD-TYPE
  T1             1               8
  T2             1              46
  T3             7             143
  T4             1              16
D297V7, multiclass
    clus
vv   CDC27 MUTATED CDC27 WILD-TYPE
  N0             8             126
  N1             1              43
  N2             1              45
D297V8, multiclass
     clus
vv    CDC27 MUTATED CDC27 WILD-TYPE
  M0             10             179
  M1              0              31
  M1A             0               1
D297V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDC27 MUTATED     10    0
  CDC27 WILD-TYPE  206    8
     clus
vv    CDC27 MUTATED CDC27 WILD-TYPE
  NO              0               8
  YES            10             206

Clustering(298) Variable = NAP1L3 MUTATION ANALYSIS
D298V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE"   "NAP1L3 MUTATED" "NAP1L3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"NAP1L3 WILD-TYPE"   "NAP1L3 MUTATED" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"NAP1L3 WILD-TYPE"   "NAP1L3 MUTATED" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE"   "NAP1L3 MUTATED" "NAP1L3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"NAP1L3 WILD-TYPE"   "NAP1L3 MUTATED" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"NAP1L3 WILD-TYPE"   "NAP1L3 MUTATED" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE"   "NAP1L3 MUTATED" "NAP1L3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"NAP1L3 WILD-TYPE"   "NAP1L3 MUTATED" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"NAP1L3 WILD-TYPE"   "NAP1L3 MUTATED" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
[1] "hr=" "7.3"
D298V2, continuous
D298V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NAP1L3 MUTATED      6    1
  NAP1L3 WILD-TYPE  148   67
        clus
vv       NAP1L3 MUTATED NAP1L3 WILD-TYPE
  COLON               6              148
  RECTUM              1               67
D298V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NAP1L3 MUTATED      2    5
  NAP1L3 WILD-TYPE  115  102
        clus
vv       NAP1L3 MUTATED NAP1L3 WILD-TYPE
  FEMALE              5              102
  MALE                2              115
D298V5, multiclass
                                clus
vv                               NAP1L3 MUTATED NAP1L3 WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D298V6, multiclass
    clus
vv   NAP1L3 MUTATED NAP1L3 WILD-TYPE
  T1              1                8
  T2              1               46
  T3              3              147
  T4              2               15
D298V7, multiclass
    clus
vv   NAP1L3 MUTATED NAP1L3 WILD-TYPE
  N0              7              127
  N1              0               44
  N2              0               46
D298V8, multiclass
     clus
vv    NAP1L3 MUTATED NAP1L3 WILD-TYPE
  M0               7              182
  M1               0               31
  M1A              0                1
D298V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NAP1L3 MUTATED      7    0
  NAP1L3 WILD-TYPE  209    8
     clus
vv    NAP1L3 MUTATED NAP1L3 WILD-TYPE
  NO               0                8
  YES              7              209

Clustering(299) Variable = ROBO2 MUTATION ANALYSIS
D299V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE"   "ROBO2 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE"   "ROBO2 MUTATED"   "ROBO2 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ROBO2 WILD-TYPE"   "ROBO2 MUTATED" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ROBO2 MUTATED" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE"   "ROBO2 MUTATED" "ROBO2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE"   "ROBO2 MUTATED" "ROBO2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ROBO2 MUTATED" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "ROBO2 MUTATED" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE"   "ROBO2 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE"   "ROBO2 MUTATED"   "ROBO2 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ROBO2 WILD-TYPE"   "ROBO2 MUTATED" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ROBO2 MUTATED" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE"   "ROBO2 MUTATED" "ROBO2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE"   "ROBO2 MUTATED" "ROBO2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ROBO2 MUTATED" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "ROBO2 MUTATED" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE"   "ROBO2 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE"   "ROBO2 MUTATED"   "ROBO2 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ROBO2 WILD-TYPE"   "ROBO2 MUTATED" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ROBO2 MUTATED" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE"   "ROBO2 MUTATED" "ROBO2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE"   "ROBO2 MUTATED" "ROBO2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ROBO2 MUTATED" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "ROBO2 MUTATED" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" "ROBO2 WILD-TYPE" 
[1] "hr=" "1.5"
D299V2, continuous
D299V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ROBO2 MUTATED     10    2
  ROBO2 WILD-TYPE  144   66
        clus
vv       ROBO2 MUTATED ROBO2 WILD-TYPE
  COLON             10             144
  RECTUM             2              66
D299V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ROBO2 MUTATED      6    6
  ROBO2 WILD-TYPE  111  101
        clus
vv       ROBO2 MUTATED ROBO2 WILD-TYPE
  FEMALE             6             101
  MALE               6             111
D299V5, multiclass
                                clus
vv                               ROBO2 MUTATED ROBO2 WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D299V6, multiclass
    clus
vv   ROBO2 MUTATED ROBO2 WILD-TYPE
  T1             0               9
  T2             2              45
  T3             8             142
  T4             2              15
D299V7, multiclass
    clus
vv   ROBO2 MUTATED ROBO2 WILD-TYPE
  N0             8             126
  N1             0              44
  N2             4              42
D299V8, multiclass
     clus
vv    ROBO2 MUTATED ROBO2 WILD-TYPE
  M0             11             178
  M1              1              30
  M1A             0               1
D299V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ROBO2 MUTATED     11    1
  ROBO2 WILD-TYPE  205    7
     clus
vv    ROBO2 MUTATED ROBO2 WILD-TYPE
  NO              1               7
  YES            11             205

Clustering(300) Variable = BLID MUTATION ANALYSIS
D300V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "BLID MUTATED" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "BLID MUTATED" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "BLID MUTATED" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "BLID MUTATED" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "BLID MUTATED" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "BLID MUTATED" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
[1] "Remove cluster labels:" "BLID MUTATED"          
clus
  BLID MUTATED BLID WILD-TYPE 
             2            118 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P     TCGA-AA-A01Q 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T     TCGA-AA-A01V 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024     TCGA-AA-A029 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02O 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F     TCGA-AA-A03J 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689     TCGA-AF-2691 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A008 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020     TCGA-AG-A025 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N     TCGA-AG-A02X 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-AG-A032     TCGA-AG-A036 
"BLID WILD-TYPE" "BLID WILD-TYPE" 
D300V2, continuous
D300V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BLID MUTATED      2    1
  BLID WILD-TYPE  152   67
        clus
vv       BLID MUTATED BLID WILD-TYPE
  COLON             2            152
  RECTUM            1             67
D300V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BLID MUTATED      2    1
  BLID WILD-TYPE  115  106
        clus
vv       BLID MUTATED BLID WILD-TYPE
  FEMALE            1            106
  MALE              2            115
D300V5, multiclass
                                clus
vv                               BLID MUTATED BLID WILD-TYPE
  COLON ADENOCARCINOMA                      2            126
  COLON MUCINOUS ADENOCARCINOMA             0             24
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D300V6, multiclass
    clus
vv   BLID MUTATED BLID WILD-TYPE
  T1            0              9
  T2            1             46
  T3            1            149
  T4            1             16
D300V7, multiclass
    clus
vv   BLID MUTATED BLID WILD-TYPE
  N0            3            131
  N1            0             44
  N2            0             46
D300V8, multiclass
     clus
vv    BLID MUTATED BLID WILD-TYPE
  M0             3            186
  M1             0             31
  M1A            0              1
D300V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BLID MUTATED      3    0
  BLID WILD-TYPE  213    8
     clus
vv    BLID MUTATED BLID WILD-TYPE
  NO             0              8
  YES            3            213

Clustering(301) Variable = ITK MUTATION ANALYSIS
D301V1, survival
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"ITK WILD-TYPE"   "ITK MUTATED" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE"   "ITK MUTATED" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "ITK MUTATED" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "ITK MUTATED" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"ITK WILD-TYPE" "ITK WILD-TYPE"   "ITK MUTATED" "ITK WILD-TYPE"   "ITK MUTATED" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"ITK WILD-TYPE"   "ITK MUTATED" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
  "ITK MUTATED" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "ITK MUTATED" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"ITK WILD-TYPE"   "ITK MUTATED" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE"   "ITK MUTATED" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "ITK MUTATED" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "ITK MUTATED" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"ITK WILD-TYPE" "ITK WILD-TYPE"   "ITK MUTATED" "ITK WILD-TYPE"   "ITK MUTATED" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"ITK WILD-TYPE"   "ITK MUTATED" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
  "ITK MUTATED" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "ITK MUTATED" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"ITK WILD-TYPE"   "ITK MUTATED" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE"   "ITK MUTATED" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "ITK MUTATED" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "ITK MUTATED" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"ITK WILD-TYPE" "ITK WILD-TYPE"   "ITK MUTATED" "ITK WILD-TYPE"   "ITK MUTATED" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"ITK WILD-TYPE"   "ITK MUTATED" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
  "ITK MUTATED" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "ITK MUTATED" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
[1] "hr=" "2.3"
D301V2, continuous
D301V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  ITK MUTATED      8    2
  ITK WILD-TYPE  146   66
        clus
vv       ITK MUTATED ITK WILD-TYPE
  COLON            8           146
  RECTUM           2            66
D301V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  ITK MUTATED      5    5
  ITK WILD-TYPE  112  102
        clus
vv       ITK MUTATED ITK WILD-TYPE
  FEMALE           5           102
  MALE             5           112
D301V5, multiclass
                                clus
vv                               ITK MUTATED ITK WILD-TYPE
  COLON ADENOCARCINOMA                     5           123
  COLON MUCINOUS ADENOCARCINOMA            3            21
  RECTAL ADENOCARCINOMA                    2            55
  RECTAL MUCINOUS ADENOCARCINOMA           0             8
D301V6, multiclass
    clus
vv   ITK MUTATED ITK WILD-TYPE
  T1           0             9
  T2           2            45
  T3           6           144
  T4           2            15
D301V7, multiclass
    clus
vv   ITK MUTATED ITK WILD-TYPE
  N0           7           127
  N1           2            42
  N2           1            45
D301V8, multiclass
     clus
vv    ITK MUTATED ITK WILD-TYPE
  M0           10           179
  M1            0            31
  M1A           0             1
D301V9, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  ITK MUTATED     10    0
  ITK WILD-TYPE  206    8
     clus
vv    ITK MUTATED ITK WILD-TYPE
  NO            0             8
  YES          10           206

Clustering(302) Variable = PTPN12 MUTATION ANALYSIS
D302V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PTPN12 WILD-TYPE"   "PTPN12 MUTATED" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PTPN12 WILD-TYPE"   "PTPN12 MUTATED" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PTPN12 MUTATED" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PTPN12 WILD-TYPE"   "PTPN12 MUTATED" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PTPN12 MUTATED" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PTPN12 WILD-TYPE"   "PTPN12 MUTATED" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PTPN12 WILD-TYPE"   "PTPN12 MUTATED" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PTPN12 MUTATED" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PTPN12 WILD-TYPE"   "PTPN12 MUTATED" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PTPN12 MUTATED" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PTPN12 WILD-TYPE"   "PTPN12 MUTATED" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PTPN12 WILD-TYPE"   "PTPN12 MUTATED" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PTPN12 MUTATED" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PTPN12 WILD-TYPE"   "PTPN12 MUTATED" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PTPN12 MUTATED" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" "PTPN12 WILD-TYPE" 
[1] "hr=" "2.1"
D302V2, continuous
D302V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PTPN12 MUTATED      8    2
  PTPN12 WILD-TYPE  146   66
        clus
vv       PTPN12 MUTATED PTPN12 WILD-TYPE
  COLON               8              146
  RECTUM              2               66
D302V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PTPN12 MUTATED      4    6
  PTPN12 WILD-TYPE  113  101
        clus
vv       PTPN12 MUTATED PTPN12 WILD-TYPE
  FEMALE              6              101
  MALE                4              113
D302V5, multiclass
                                clus
vv                               PTPN12 MUTATED PTPN12 WILD-TYPE
  COLON ADENOCARCINOMA                        7              121
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D302V6, multiclass
    clus
vv   PTPN12 MUTATED PTPN12 WILD-TYPE
  T1              1                8
  T2              2               45
  T3              4              146
  T4              3               14
D302V7, multiclass
    clus
vv   PTPN12 MUTATED PTPN12 WILD-TYPE
  N0              7              127
  N1              2               42
  N2              1               45
D302V8, multiclass
     clus
vv    PTPN12 MUTATED PTPN12 WILD-TYPE
  M0              10              179
  M1               0               31
  M1A              0                1
D302V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PTPN12 MUTATED     10    0
  PTPN12 WILD-TYPE  206    8
     clus
vv    PTPN12 MUTATED PTPN12 WILD-TYPE
  NO               0                8
  YES             10              206

Clustering(303) Variable = TRPC6 MUTATION ANALYSIS
D303V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE"   "TRPC6 MUTATED" "TRPC6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TRPC6 WILD-TYPE"   "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE"   "TRPC6 MUTATED" "TRPC6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TRPC6 WILD-TYPE"   "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE"   "TRPC6 MUTATED" "TRPC6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TRPC6 WILD-TYPE"   "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
[1] "hr="     "7.8e+07"
D303V2, continuous
D303V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPC6 MUTATED      8    3
  TRPC6 WILD-TYPE  146   65
        clus
vv       TRPC6 MUTATED TRPC6 WILD-TYPE
  COLON              8             146
  RECTUM             3              65
D303V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPC6 MUTATED      6    5
  TRPC6 WILD-TYPE  111  102
        clus
vv       TRPC6 MUTATED TRPC6 WILD-TYPE
  FEMALE             5             102
  MALE               6             111
D303V5, multiclass
                                clus
vv                               TRPC6 MUTATED TRPC6 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D303V6, multiclass
    clus
vv   TRPC6 MUTATED TRPC6 WILD-TYPE
  T1             0               9
  T2             1              46
  T3             9             141
  T4             1              16
D303V7, multiclass
    clus
vv   TRPC6 MUTATED TRPC6 WILD-TYPE
  N0             8             126
  N1             0              44
  N2             3              43
D303V8, multiclass
     clus
vv    TRPC6 MUTATED TRPC6 WILD-TYPE
  M0             11             178
  M1              0              31
  M1A             0               1
D303V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPC6 MUTATED     11    0
  TRPC6 WILD-TYPE  205    8
     clus
vv    TRPC6 MUTATED TRPC6 WILD-TYPE
  NO              0               8
  YES            11             205

Clustering(304) Variable = PROKR1 MUTATION ANALYSIS
D304V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PROKR1 WILD-TYPE"   "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE"   "PROKR1 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PROKR1 WILD-TYPE"   "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PROKR1 WILD-TYPE"   "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PROKR1 WILD-TYPE"   "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PROKR1 WILD-TYPE"   "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE"   "PROKR1 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PROKR1 WILD-TYPE"   "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PROKR1 WILD-TYPE"   "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PROKR1 WILD-TYPE"   "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PROKR1 WILD-TYPE"   "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE"   "PROKR1 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PROKR1 WILD-TYPE"   "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PROKR1 WILD-TYPE"   "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PROKR1 WILD-TYPE"   "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D304V2, continuous
D304V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PROKR1 MUTATED      8    1
  PROKR1 WILD-TYPE  146   67
        clus
vv       PROKR1 MUTATED PROKR1 WILD-TYPE
  COLON               8              146
  RECTUM              1               67
D304V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PROKR1 MUTATED      5    4
  PROKR1 WILD-TYPE  112  103
        clus
vv       PROKR1 MUTATED PROKR1 WILD-TYPE
  FEMALE              4              103
  MALE                5              112
D304V5, multiclass
                                clus
vv                               PROKR1 MUTATED PROKR1 WILD-TYPE
  COLON ADENOCARCINOMA                        7              121
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D304V6, multiclass
    clus
vv   PROKR1 MUTATED PROKR1 WILD-TYPE
  T1              1                8
  T2              2               45
  T3              5              145
  T4              1               16
D304V7, multiclass
    clus
vv   PROKR1 MUTATED PROKR1 WILD-TYPE
  N0              7              127
  N1              1               43
  N2              1               45
D304V8, multiclass
     clus
vv    PROKR1 MUTATED PROKR1 WILD-TYPE
  M0               8              181
  M1               0               31
  M1A              0                1
D304V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PROKR1 MUTATED      9    0
  PROKR1 WILD-TYPE  207    8
     clus
vv    PROKR1 MUTATED PROKR1 WILD-TYPE
  NO               0                8
  YES              9              207

Clustering(305) Variable = KCNB2 MUTATION ANALYSIS
D305V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "KCNB2 MUTATED"   "KCNB2 MUTATED" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNB2 WILD-TYPE"   "KCNB2 MUTATED" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "KCNB2 MUTATED" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNB2 WILD-TYPE"   "KCNB2 MUTATED" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE"   "KCNB2 MUTATED" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "KCNB2 MUTATED" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE"   "KCNB2 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE"   "KCNB2 MUTATED" "KCNB2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "KCNB2 MUTATED"   "KCNB2 MUTATED" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNB2 WILD-TYPE"   "KCNB2 MUTATED" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "KCNB2 MUTATED" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNB2 WILD-TYPE"   "KCNB2 MUTATED" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE"   "KCNB2 MUTATED" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "KCNB2 MUTATED" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE"   "KCNB2 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE"   "KCNB2 MUTATED" "KCNB2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "KCNB2 MUTATED"   "KCNB2 MUTATED" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNB2 WILD-TYPE"   "KCNB2 MUTATED" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "KCNB2 MUTATED" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNB2 WILD-TYPE"   "KCNB2 MUTATED" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE"   "KCNB2 MUTATED" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "KCNB2 MUTATED" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE"   "KCNB2 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE"   "KCNB2 MUTATED" "KCNB2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
[1] "hr=" "2.5"
D305V2, continuous
D305V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNB2 MUTATED      6    5
  KCNB2 WILD-TYPE  148   63
        clus
vv       KCNB2 MUTATED KCNB2 WILD-TYPE
  COLON              6             148
  RECTUM             5              63
D305V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNB2 MUTATED      8    3
  KCNB2 WILD-TYPE  109  104
        clus
vv       KCNB2 MUTATED KCNB2 WILD-TYPE
  FEMALE             3             104
  MALE               8             109
D305V5, multiclass
                                clus
vv                               KCNB2 MUTATED KCNB2 WILD-TYPE
  COLON ADENOCARCINOMA                       3             125
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      5              52
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D305V6, multiclass
    clus
vv   KCNB2 MUTATED KCNB2 WILD-TYPE
  T1             0               9
  T2             3              44
  T3             4             146
  T4             4              13
D305V7, multiclass
    clus
vv   KCNB2 MUTATED KCNB2 WILD-TYPE
  N0             8             126
  N1             0              44
  N2             3              43
D305V8, multiclass
     clus
vv    KCNB2 MUTATED KCNB2 WILD-TYPE
  M0             10             179
  M1              1              30
  M1A             0               1
D305V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNB2 MUTATED     11    0
  KCNB2 WILD-TYPE  205    8
     clus
vv    KCNB2 MUTATED KCNB2 WILD-TYPE
  NO              0               8
  YES            11             205

Clustering(306) Variable = CD180 MUTATION ANALYSIS
D306V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CD180 WILD-TYPE"   "CD180 MUTATED" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CD180 WILD-TYPE" "CD180 WILD-TYPE"   "CD180 MUTATED" "CD180 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CD180 MUTATED" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CD180 MUTATED" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CD180 MUTATED" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CD180 WILD-TYPE"   "CD180 MUTATED" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CD180 WILD-TYPE" "CD180 WILD-TYPE"   "CD180 MUTATED" "CD180 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CD180 MUTATED" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CD180 MUTATED" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CD180 MUTATED" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CD180 WILD-TYPE"   "CD180 MUTATED" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CD180 WILD-TYPE" "CD180 WILD-TYPE"   "CD180 MUTATED" "CD180 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CD180 MUTATED" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CD180 MUTATED" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CD180 MUTATED" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D306V2, continuous
D306V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CD180 MUTATED      8    1
  CD180 WILD-TYPE  146   67
        clus
vv       CD180 MUTATED CD180 WILD-TYPE
  COLON              8             146
  RECTUM             1              67
D306V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CD180 MUTATED      4    5
  CD180 WILD-TYPE  113  102
        clus
vv       CD180 MUTATED CD180 WILD-TYPE
  FEMALE             5             102
  MALE               4             113
D306V5, multiclass
                                clus
vv                               CD180 MUTATED CD180 WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              0              24
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D306V6, multiclass
    clus
vv   CD180 MUTATED CD180 WILD-TYPE
  T1             0               9
  T2             3              44
  T3             5             145
  T4             1              16
D306V7, multiclass
    clus
vv   CD180 MUTATED CD180 WILD-TYPE
  N0             7             127
  N1             2              42
  N2             0              46
D306V8, multiclass
     clus
vv    CD180 MUTATED CD180 WILD-TYPE
  M0              8             181
  M1              0              31
  M1A             0               1
D306V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CD180 MUTATED      9    0
  CD180 WILD-TYPE  207    8
     clus
vv    CD180 MUTATED CD180 WILD-TYPE
  NO              0               8
  YES             9             207

Clustering(307) Variable = OR4A15 MUTATION ANALYSIS
D307V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
[1] "hr=" "2.3"
D307V2, continuous
D307V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4A15 MUTATED      6    0
  OR4A15 WILD-TYPE  148   68
        clus
vv       OR4A15 MUTATED OR4A15 WILD-TYPE
  COLON               6              148
  RECTUM              0               68
D307V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4A15 MUTATED      5    1
  OR4A15 WILD-TYPE  112  106
        clus
vv       OR4A15 MUTATED OR4A15 WILD-TYPE
  FEMALE              1              106
  MALE                5              112
D307V5, multiclass
                                clus
vv                               OR4A15 MUTATED OR4A15 WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       0               57
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D307V6, multiclass
    clus
vv   OR4A15 MUTATED OR4A15 WILD-TYPE
  T1              0                9
  T2              3               44
  T3              1              149
  T4              2               15
D307V7, multiclass
    clus
vv   OR4A15 MUTATED OR4A15 WILD-TYPE
  N0              5              129
  N1              1               43
  N2              0               46
D307V8, multiclass
     clus
vv    OR4A15 MUTATED OR4A15 WILD-TYPE
  M0               6              183
  M1               0               31
  M1A              0                1
D307V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4A15 MUTATED      6    0
  OR4A15 WILD-TYPE  210    8
     clus
vv    OR4A15 MUTATED OR4A15 WILD-TYPE
  NO               0                8
  YES              6              210

Clustering(308) Variable = COL12A1 MUTATION ANALYSIS
D308V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE"   "COL12A1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE"   "COL12A1 MUTATED" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE"   "COL12A1 MUTATED" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE"   "COL12A1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE"   "COL12A1 MUTATED" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE"   "COL12A1 MUTATED" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE"   "COL12A1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE"   "COL12A1 MUTATED" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE"   "COL12A1 MUTATED" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
[1] "hr=" "2.1"
D308V2, continuous
D308V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL12A1 MUTATED     15    6
  COL12A1 WILD-TYPE  139   62
        clus
vv       COL12A1 MUTATED COL12A1 WILD-TYPE
  COLON               15               139
  RECTUM               6                62
D308V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL12A1 MUTATED     11   10
  COL12A1 WILD-TYPE  106   97
        clus
vv       COL12A1 MUTATED COL12A1 WILD-TYPE
  FEMALE              10                97
  MALE                11               106
D308V5, multiclass
                                clus
vv                               COL12A1 MUTATED COL12A1 WILD-TYPE
  COLON ADENOCARCINOMA                         9               119
  COLON MUCINOUS ADENOCARCINOMA                5                19
  RECTAL ADENOCARCINOMA                        6                51
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D308V6, multiclass
    clus
vv   COL12A1 MUTATED COL12A1 WILD-TYPE
  T1               1                 8
  T2               6                41
  T3              11               139
  T4               3                14
D308V7, multiclass
    clus
vv   COL12A1 MUTATED COL12A1 WILD-TYPE
  N0              17               117
  N1               1                43
  N2               3                43
D308V8, multiclass
     clus
vv    COL12A1 MUTATED COL12A1 WILD-TYPE
  M0               20               169
  M1                0                31
  M1A               0                 1
D308V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL12A1 MUTATED     21    0
  COL12A1 WILD-TYPE  195    8
     clus
vv    COL12A1 MUTATED COL12A1 WILD-TYPE
  NO                0                 8
  YES              21               195

Clustering(309) Variable = LRRK2 MUTATION ANALYSIS
D309V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "LRRK2 MUTATED" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE"   "LRRK2 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "LRRK2 MUTATED" "LRRK2 WILD-TYPE"   "LRRK2 MUTATED" "LRRK2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRRK2 WILD-TYPE"   "LRRK2 MUTATED" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE"   "LRRK2 MUTATED" "LRRK2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRRK2 WILD-TYPE"   "LRRK2 MUTATED" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LRRK2 MUTATED" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE"   "LRRK2 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "LRRK2 MUTATED" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LRRK2 MUTATED" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "LRRK2 MUTATED" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "LRRK2 MUTATED" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE"   "LRRK2 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "LRRK2 MUTATED" "LRRK2 WILD-TYPE"   "LRRK2 MUTATED" "LRRK2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRRK2 WILD-TYPE"   "LRRK2 MUTATED" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE"   "LRRK2 MUTATED" "LRRK2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRRK2 WILD-TYPE"   "LRRK2 MUTATED" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LRRK2 MUTATED" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE"   "LRRK2 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "LRRK2 MUTATED" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LRRK2 MUTATED" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "LRRK2 MUTATED" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "LRRK2 MUTATED" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE"   "LRRK2 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "LRRK2 MUTATED" "LRRK2 WILD-TYPE"   "LRRK2 MUTATED" "LRRK2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRRK2 WILD-TYPE"   "LRRK2 MUTATED" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE"   "LRRK2 MUTATED" "LRRK2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRRK2 WILD-TYPE"   "LRRK2 MUTATED" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LRRK2 MUTATED" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE"   "LRRK2 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "LRRK2 MUTATED" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LRRK2 MUTATED" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "LRRK2 MUTATED" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" "LRRK2 WILD-TYPE" 
[1] "hr=" "1.6"
D309V2, continuous
D309V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRRK2 MUTATED     14    5
  LRRK2 WILD-TYPE  140   63
        clus
vv       LRRK2 MUTATED LRRK2 WILD-TYPE
  COLON             14             140
  RECTUM             5              63
D309V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRRK2 MUTATED      6   13
  LRRK2 WILD-TYPE  111   94
        clus
vv       LRRK2 MUTATED LRRK2 WILD-TYPE
  FEMALE            13              94
  MALE               6             111
D309V5, multiclass
                                clus
vv                               LRRK2 MUTATED LRRK2 WILD-TYPE
  COLON ADENOCARCINOMA                       9             119
  COLON MUCINOUS ADENOCARCINOMA              5              19
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D309V6, multiclass
    clus
vv   LRRK2 MUTATED LRRK2 WILD-TYPE
  T1             0               9
  T2             2              45
  T3            11             139
  T4             6              11
D309V7, multiclass
    clus
vv   LRRK2 MUTATED LRRK2 WILD-TYPE
  N0            13             121
  N1             2              42
  N2             4              42
D309V8, multiclass
     clus
vv    LRRK2 MUTATED LRRK2 WILD-TYPE
  M0             17             172
  M1              2              29
  M1A             0               1
D309V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRRK2 MUTATED     19    0
  LRRK2 WILD-TYPE  197    8
     clus
vv    LRRK2 MUTATED LRRK2 WILD-TYPE
  NO              0               8
  YES            19             197

Clustering(310) Variable = POTEB MUTATION ANALYSIS
D310V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"POTEB WILD-TYPE" "POTEB WILD-TYPE"   "POTEB MUTATED" "POTEB WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE"   "POTEB MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
  "POTEB MUTATED" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "POTEB MUTATED" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"POTEB WILD-TYPE" "POTEB WILD-TYPE"   "POTEB MUTATED" "POTEB WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE"   "POTEB MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
  "POTEB MUTATED" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "POTEB MUTATED" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"POTEB WILD-TYPE" "POTEB WILD-TYPE"   "POTEB MUTATED" "POTEB WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE"   "POTEB MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
  "POTEB MUTATED" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "POTEB MUTATED" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
[1] "hr="     "9200000"
D310V2, continuous
D310V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POTEB MUTATED      5    3
  POTEB WILD-TYPE  149   65
        clus
vv       POTEB MUTATED POTEB WILD-TYPE
  COLON              5             149
  RECTUM             3              65
D310V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POTEB MUTATED      4    4
  POTEB WILD-TYPE  113  103
        clus
vv       POTEB MUTATED POTEB WILD-TYPE
  FEMALE             4             103
  MALE               4             113
D310V5, multiclass
                                clus
vv                               POTEB MUTATED POTEB WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D310V6, multiclass
    clus
vv   POTEB MUTATED POTEB WILD-TYPE
  T1             0               9
  T2             2              45
  T3             4             146
  T4             2              15
D310V7, multiclass
    clus
vv   POTEB MUTATED POTEB WILD-TYPE
  N0             7             127
  N1             1              43
  N2             0              46
D310V8, multiclass
     clus
vv    POTEB MUTATED POTEB WILD-TYPE
  M0              7             182
  M1              0              31
  M1A             0               1
D310V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POTEB MUTATED      8    0
  POTEB WILD-TYPE  208    8
     clus
vv    POTEB MUTATED POTEB WILD-TYPE
  NO              0               8
  YES             8             208

Clustering(311) Variable = SLC9A9 MUTATION ANALYSIS
D311V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE"   "SLC9A9 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "SLC9A9 MUTATED" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE"   "SLC9A9 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE"   "SLC9A9 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SLC9A9 WILD-TYPE"   "SLC9A9 MUTATED" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SLC9A9 MUTATED" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "SLC9A9 MUTATED"   "SLC9A9 MUTATED" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SLC9A9 MUTATED" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE"   "SLC9A9 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "SLC9A9 MUTATED" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE"   "SLC9A9 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE"   "SLC9A9 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SLC9A9 WILD-TYPE"   "SLC9A9 MUTATED" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SLC9A9 MUTATED" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "SLC9A9 MUTATED"   "SLC9A9 MUTATED" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SLC9A9 MUTATED" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE"   "SLC9A9 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "SLC9A9 MUTATED" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE"   "SLC9A9 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE"   "SLC9A9 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SLC9A9 WILD-TYPE"   "SLC9A9 MUTATED" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SLC9A9 MUTATED" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "SLC9A9 MUTATED"   "SLC9A9 MUTATED" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SLC9A9 MUTATED" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
[1] "hr=" "1.3"
D311V2, continuous
D311V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLC9A9 MUTATED     10    2
  SLC9A9 WILD-TYPE  144   66
        clus
vv       SLC9A9 MUTATED SLC9A9 WILD-TYPE
  COLON              10              144
  RECTUM              2               66
D311V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLC9A9 MUTATED      6    6
  SLC9A9 WILD-TYPE  111  101
        clus
vv       SLC9A9 MUTATED SLC9A9 WILD-TYPE
  FEMALE              6              101
  MALE                6              111
D311V5, multiclass
                                clus
vv                               SLC9A9 MUTATED SLC9A9 WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               6               18
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D311V6, multiclass
    clus
vv   SLC9A9 MUTATED SLC9A9 WILD-TYPE
  T1              0                9
  T2              3               44
  T3              6              144
  T4              2               15
D311V7, multiclass
    clus
vv   SLC9A9 MUTATED SLC9A9 WILD-TYPE
  N0             10              124
  N1              1               43
  N2              1               45
D311V8, multiclass
     clus
vv    SLC9A9 MUTATED SLC9A9 WILD-TYPE
  M0              11              178
  M1               0               31
  M1A              0                1
D311V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLC9A9 MUTATED     11    1
  SLC9A9 WILD-TYPE  205    7
     clus
vv    SLC9A9 MUTATED SLC9A9 WILD-TYPE
  NO               1                7
  YES             11              205

Clustering(312) Variable = GGA2 MUTATION ANALYSIS
D312V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GGA2 WILD-TYPE"   "GGA2 MUTATED" "GGA2 WILD-TYPE"   "GGA2 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE"   "GGA2 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GGA2 WILD-TYPE"   "GGA2 MUTATED" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "GGA2 MUTATED" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GGA2 WILD-TYPE"   "GGA2 MUTATED" "GGA2 WILD-TYPE"   "GGA2 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE"   "GGA2 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GGA2 WILD-TYPE"   "GGA2 MUTATED" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "GGA2 MUTATED" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GGA2 WILD-TYPE"   "GGA2 MUTATED" "GGA2 WILD-TYPE"   "GGA2 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE"   "GGA2 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GGA2 WILD-TYPE"   "GGA2 MUTATED" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "GGA2 MUTATED" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" "GGA2 WILD-TYPE" 
[1] "hr=" "3.3"
D312V2, continuous
D312V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GGA2 MUTATED      8    0
  GGA2 WILD-TYPE  146   68
        clus
vv       GGA2 MUTATED GGA2 WILD-TYPE
  COLON             8            146
  RECTUM            0             68
D312V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GGA2 MUTATED      2    6
  GGA2 WILD-TYPE  115  101
        clus
vv       GGA2 MUTATED GGA2 WILD-TYPE
  FEMALE            6            101
  MALE              2            115
D312V5, multiclass
                                clus
vv                               GGA2 MUTATED GGA2 WILD-TYPE
  COLON ADENOCARCINOMA                      5            123
  COLON MUCINOUS ADENOCARCINOMA             3             21
  RECTAL ADENOCARCINOMA                     0             57
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D312V6, multiclass
    clus
vv   GGA2 MUTATED GGA2 WILD-TYPE
  T1            1              8
  T2            1             46
  T3            4            146
  T4            2             15
D312V7, multiclass
    clus
vv   GGA2 MUTATED GGA2 WILD-TYPE
  N0            5            129
  N1            0             44
  N2            3             43
D312V8, multiclass
     clus
vv    GGA2 MUTATED GGA2 WILD-TYPE
  M0             8            181
  M1             0             31
  M1A            0              1
D312V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GGA2 MUTATED      8    0
  GGA2 WILD-TYPE  208    8
     clus
vv    GGA2 MUTATED GGA2 WILD-TYPE
  NO             0              8
  YES            8            208

Clustering(313) Variable = TASP1 MUTATION ANALYSIS
D313V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE"   "TASP1 MUTATED" "TASP1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "TASP1 MUTATED" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE"   "TASP1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TASP1 WILD-TYPE"   "TASP1 MUTATED" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE"   "TASP1 MUTATED" "TASP1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "TASP1 MUTATED" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE"   "TASP1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TASP1 WILD-TYPE"   "TASP1 MUTATED" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE"   "TASP1 MUTATED" "TASP1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "TASP1 MUTATED" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE"   "TASP1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TASP1 WILD-TYPE"   "TASP1 MUTATED" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
[1] "hr="     "9300000"
D313V2, continuous
D313V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TASP1 MUTATED      4    1
  TASP1 WILD-TYPE  150   67
        clus
vv       TASP1 MUTATED TASP1 WILD-TYPE
  COLON              4             150
  RECTUM             1              67
D313V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TASP1 MUTATED      2    3
  TASP1 WILD-TYPE  115  104
        clus
vv       TASP1 MUTATED TASP1 WILD-TYPE
  FEMALE             3             104
  MALE               2             115
D313V5, multiclass
                                clus
vv                               TASP1 MUTATED TASP1 WILD-TYPE
  COLON ADENOCARCINOMA                       3             125
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D313V6, multiclass
    clus
vv   TASP1 MUTATED TASP1 WILD-TYPE
  T1             1               8
  T2             2              45
  T3             1             149
  T4             1              16
D313V7, multiclass
    clus
vv   TASP1 MUTATED TASP1 WILD-TYPE
  N0             5             129
  N1             0              44
  N2             0              46
D313V8, multiclass
     clus
vv    TASP1 MUTATED TASP1 WILD-TYPE
  M0              2             187
  M1              1              30
  M1A             0               1
D313V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TASP1 MUTATED      4    1
  TASP1 WILD-TYPE  212    7
     clus
vv    TASP1 MUTATED TASP1 WILD-TYPE
  NO              1               7
  YES             4             212

Clustering(314) Variable = TMPRSS11A MUTATION ANALYSIS
D314V1, survival
         TCGA-A6-2670          TCGA-A6-2672          TCGA-A6-2674 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-A6-2676          TCGA-A6-2677          TCGA-A6-2678 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-A6-2683          TCGA-A6-3807          TCGA-A6-3808 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3518          TCGA-AA-3526 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE"   "TMPRSS11A MUTATED" 
         TCGA-AA-3555          TCGA-AA-3562          TCGA-AA-3666 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3685          TCGA-AA-3710 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3715          TCGA-AA-3811          TCGA-AA-3818 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3837          TCGA-AA-3842          TCGA-AA-3844 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3846          TCGA-AA-3848          TCGA-AA-3854 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3877          TCGA-AA-3939          TCGA-AA-3941 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3947          TCGA-AA-3949          TCGA-AA-3952 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3966          TCGA-AA-3975          TCGA-AA-3977 
  "TMPRSS11A MUTATED" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3986          TCGA-AA-A004          TCGA-AA-A00A 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A00D          TCGA-AA-A00E          TCGA-AA-A00F 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A00J          TCGA-AA-A00K          TCGA-AA-A00L 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A00N          TCGA-AA-A00O          TCGA-AA-A00Q 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A00R          TCGA-AA-A00U          TCGA-AA-A00W 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A00Z          TCGA-AA-A010          TCGA-AA-A017 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A01D          TCGA-AA-A01F          TCGA-AA-A01G 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A01I          TCGA-AA-A01K          TCGA-AA-A01P 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A01Q          TCGA-AA-A01R          TCGA-AA-A01S 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A01T          TCGA-AA-A01V          TCGA-AA-A01X 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A01Z          TCGA-AA-A024          TCGA-AA-A029 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A02F          TCGA-AA-A02H          TCGA-AA-A02J 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A02O          TCGA-AA-A02W          TCGA-AA-A02Y 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A03F          TCGA-AA-A03J          TCGA-AY-4070 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AY-4071          TCGA-AF-2689          TCGA-AF-2691 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AF-2692          TCGA-AF-3400          TCGA-AF-3913 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-3581          TCGA-AG-3582          TCGA-AG-3583 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-3587          TCGA-AG-3599          TCGA-AG-3726 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-3727          TCGA-AG-3878          TCGA-AG-3887 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-3892          TCGA-AG-3893          TCGA-AG-3894 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-3999          TCGA-AG-4001          TCGA-AG-4007 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-4008          TCGA-AG-A002          TCGA-AG-A008 
"TMPRSS11A WILD-TYPE"   "TMPRSS11A MUTATED"   "TMPRSS11A MUTATED" 
         TCGA-AG-A00C          TCGA-AG-A00H          TCGA-AG-A00Y 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-A011          TCGA-AG-A014          TCGA-AG-A015 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-A016          TCGA-AG-A01L          TCGA-AG-A01W 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-A01Y          TCGA-AG-A020          TCGA-AG-A025 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-A026          TCGA-AG-A02G          TCGA-AG-A02N 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-A02X          TCGA-AG-A032          TCGA-AG-A036 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-A6-2670          TCGA-A6-2672          TCGA-A6-2674 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-A6-2676          TCGA-A6-2677          TCGA-A6-2678 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-A6-2683          TCGA-A6-3807          TCGA-A6-3808 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3518          TCGA-AA-3526 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE"   "TMPRSS11A MUTATED" 
         TCGA-AA-3555          TCGA-AA-3562          TCGA-AA-3666 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3685          TCGA-AA-3710 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3715          TCGA-AA-3811          TCGA-AA-3818 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3837          TCGA-AA-3842          TCGA-AA-3844 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3846          TCGA-AA-3848          TCGA-AA-3854 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3877          TCGA-AA-3939          TCGA-AA-3941 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3947          TCGA-AA-3949          TCGA-AA-3952 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3966          TCGA-AA-3975          TCGA-AA-3977 
  "TMPRSS11A MUTATED" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3986          TCGA-AA-A004          TCGA-AA-A00A 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A00D          TCGA-AA-A00E          TCGA-AA-A00F 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A00J          TCGA-AA-A00K          TCGA-AA-A00L 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A00N          TCGA-AA-A00O          TCGA-AA-A00Q 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A00R          TCGA-AA-A00U          TCGA-AA-A00W 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A00Z          TCGA-AA-A010          TCGA-AA-A017 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A01D          TCGA-AA-A01F          TCGA-AA-A01G 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A01I          TCGA-AA-A01K          TCGA-AA-A01P 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A01Q          TCGA-AA-A01R          TCGA-AA-A01S 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A01T          TCGA-AA-A01V          TCGA-AA-A01X 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A01Z          TCGA-AA-A024          TCGA-AA-A029 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A02F          TCGA-AA-A02H          TCGA-AA-A02J 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A02O          TCGA-AA-A02W          TCGA-AA-A02Y 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A03F          TCGA-AA-A03J          TCGA-AY-4070 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AY-4071          TCGA-AF-2689          TCGA-AF-2691 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AF-2692          TCGA-AF-3400          TCGA-AF-3913 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-3581          TCGA-AG-3582          TCGA-AG-3583 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-3587          TCGA-AG-3599          TCGA-AG-3726 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-3727          TCGA-AG-3878          TCGA-AG-3887 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-3892          TCGA-AG-3893          TCGA-AG-3894 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-3999          TCGA-AG-4001          TCGA-AG-4007 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-4008          TCGA-AG-A002          TCGA-AG-A008 
"TMPRSS11A WILD-TYPE"   "TMPRSS11A MUTATED"   "TMPRSS11A MUTATED" 
         TCGA-AG-A00C          TCGA-AG-A00H          TCGA-AG-A00Y 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-A011          TCGA-AG-A014          TCGA-AG-A015 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-A016          TCGA-AG-A01L          TCGA-AG-A01W 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-A01Y          TCGA-AG-A020          TCGA-AG-A025 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-A026          TCGA-AG-A02G          TCGA-AG-A02N 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-A02X          TCGA-AG-A032          TCGA-AG-A036 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-A6-2670          TCGA-A6-2672          TCGA-A6-2674 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-A6-2676          TCGA-A6-2677          TCGA-A6-2678 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-A6-2683          TCGA-A6-3807          TCGA-A6-3808 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3518          TCGA-AA-3526 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE"   "TMPRSS11A MUTATED" 
         TCGA-AA-3555          TCGA-AA-3562          TCGA-AA-3666 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3685          TCGA-AA-3710 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3715          TCGA-AA-3811          TCGA-AA-3818 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3837          TCGA-AA-3842          TCGA-AA-3844 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3846          TCGA-AA-3848          TCGA-AA-3854 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3877          TCGA-AA-3939          TCGA-AA-3941 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3947          TCGA-AA-3949          TCGA-AA-3952 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3966          TCGA-AA-3975          TCGA-AA-3977 
  "TMPRSS11A MUTATED" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3986          TCGA-AA-A004          TCGA-AA-A00A 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A00D          TCGA-AA-A00E          TCGA-AA-A00F 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A00J          TCGA-AA-A00K          TCGA-AA-A00L 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A00N          TCGA-AA-A00O          TCGA-AA-A00Q 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A00R          TCGA-AA-A00U          TCGA-AA-A00W 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A00Z          TCGA-AA-A010          TCGA-AA-A017 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A01D          TCGA-AA-A01F          TCGA-AA-A01G 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A01I          TCGA-AA-A01K          TCGA-AA-A01P 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A01Q          TCGA-AA-A01R          TCGA-AA-A01S 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A01T          TCGA-AA-A01V          TCGA-AA-A01X 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A01Z          TCGA-AA-A024          TCGA-AA-A029 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A02F          TCGA-AA-A02H          TCGA-AA-A02J 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A02O          TCGA-AA-A02W          TCGA-AA-A02Y 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A03F          TCGA-AA-A03J          TCGA-AY-4070 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AY-4071          TCGA-AF-2689          TCGA-AF-2691 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AF-2692          TCGA-AF-3400          TCGA-AF-3913 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-3581          TCGA-AG-3582          TCGA-AG-3583 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-3587          TCGA-AG-3599          TCGA-AG-3726 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-3727          TCGA-AG-3878          TCGA-AG-3887 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-3892          TCGA-AG-3893          TCGA-AG-3894 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-3999          TCGA-AG-4001          TCGA-AG-4007 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-4008          TCGA-AG-A002          TCGA-AG-A008 
"TMPRSS11A WILD-TYPE"   "TMPRSS11A MUTATED"   "TMPRSS11A MUTATED" 
         TCGA-AG-A00C          TCGA-AG-A00H          TCGA-AG-A00Y 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-A011          TCGA-AG-A014          TCGA-AG-A015 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-A016          TCGA-AG-A01L          TCGA-AG-A01W 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-A01Y          TCGA-AG-A020          TCGA-AG-A025 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-A026          TCGA-AG-A02G          TCGA-AG-A02N 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-A02X          TCGA-AG-A032          TCGA-AG-A036 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
[1] "hr="     "2.5e+07"
D314V2, continuous
D314V3, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  TMPRSS11A MUTATED      5    2
  TMPRSS11A WILD-TYPE  149   66
        clus
vv       TMPRSS11A MUTATED TMPRSS11A WILD-TYPE
  COLON                  5                 149
  RECTUM                 2                  66
D314V4, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  TMPRSS11A MUTATED      3    4
  TMPRSS11A WILD-TYPE  114  103
        clus
vv       TMPRSS11A MUTATED TMPRSS11A WILD-TYPE
  FEMALE                 4                 103
  MALE                   3                 114
D314V5, multiclass
                                clus
vv                               TMPRSS11A MUTATED TMPRSS11A WILD-TYPE
  COLON ADENOCARCINOMA                           3                 125
  COLON MUCINOUS ADENOCARCINOMA                  2                  22
  RECTAL ADENOCARCINOMA                          1                  56
  RECTAL MUCINOUS ADENOCARCINOMA                 1                   7
D314V6, multiclass
    clus
vv   TMPRSS11A MUTATED TMPRSS11A WILD-TYPE
  T1                 0                   9
  T2                 4                  43
  T3                 3                 147
  T4                 0                  17
D314V7, multiclass
    clus
vv   TMPRSS11A MUTATED TMPRSS11A WILD-TYPE
  N0                 5                 129
  N1                 1                  43
  N2                 1                  45
D314V8, multiclass
     clus
vv    TMPRSS11A MUTATED TMPRSS11A WILD-TYPE
  M0                  7                 182
  M1                  0                  31
  M1A                 0                   1
D314V9, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  TMPRSS11A MUTATED      7    0
  TMPRSS11A WILD-TYPE  209    8
     clus
vv    TMPRSS11A MUTATED TMPRSS11A WILD-TYPE
  NO                  0                   8
  YES                 7                 209

Clustering(315) Variable = ERBB2 MUTATION ANALYSIS
D315V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE"   "ERBB2 MUTATED" "ERBB2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE"   "ERBB2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "ERBB2 MUTATED" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ERBB2 MUTATED" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE"   "ERBB2 MUTATED" "ERBB2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE"   "ERBB2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "ERBB2 MUTATED" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ERBB2 MUTATED" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE"   "ERBB2 MUTATED" "ERBB2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE"   "ERBB2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "ERBB2 MUTATED" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ERBB2 MUTATED" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
[1] "hr="     "9200000"
D315V2, continuous
D315V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ERBB2 MUTATED      5    4
  ERBB2 WILD-TYPE  149   64
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  COLON              5             149
  RECTUM             4              64
D315V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ERBB2 MUTATED      8    1
  ERBB2 WILD-TYPE  109  106
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  FEMALE             1             106
  MALE               8             109
D315V5, multiclass
                                clus
vv                               ERBB2 MUTATED ERBB2 WILD-TYPE
  COLON ADENOCARCINOMA                       3             125
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D315V6, multiclass
    clus
vv   ERBB2 MUTATED ERBB2 WILD-TYPE
  T1             0               9
  T2             3              44
  T3             4             146
  T4             2              15
D315V7, multiclass
    clus
vv   ERBB2 MUTATED ERBB2 WILD-TYPE
  N0             7             127
  N1             1              43
  N2             1              45
D315V8, multiclass
     clus
vv    ERBB2 MUTATED ERBB2 WILD-TYPE
  M0              7             182
  M1              1              30
  M1A             0               1
D315V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ERBB2 MUTATED      9    0
  ERBB2 WILD-TYPE  207    8
     clus
vv    ERBB2 MUTATED ERBB2 WILD-TYPE
  NO              0               8
  YES             9             207

Clustering(316) Variable = MAP7 MUTATION ANALYSIS
D316V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "MAP7 MUTATED" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE"   "MAP7 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"MAP7 WILD-TYPE"   "MAP7 MUTATED" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "MAP7 MUTATED" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "MAP7 MUTATED" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE"   "MAP7 MUTATED" "MAP7 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"MAP7 WILD-TYPE"   "MAP7 MUTATED" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "MAP7 MUTATED" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "MAP7 MUTATED" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE"   "MAP7 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"MAP7 WILD-TYPE"   "MAP7 MUTATED" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "MAP7 MUTATED" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "MAP7 MUTATED" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE"   "MAP7 MUTATED" "MAP7 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"MAP7 WILD-TYPE"   "MAP7 MUTATED" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "MAP7 MUTATED" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "MAP7 MUTATED" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE"   "MAP7 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"MAP7 WILD-TYPE"   "MAP7 MUTATED" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "MAP7 MUTATED" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "MAP7 MUTATED" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE"   "MAP7 MUTATED" "MAP7 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"MAP7 WILD-TYPE"   "MAP7 MUTATED" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "MAP7 MUTATED" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D316V2, continuous
D316V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MAP7 MUTATED      7    3
  MAP7 WILD-TYPE  147   65
        clus
vv       MAP7 MUTATED MAP7 WILD-TYPE
  COLON             7            147
  RECTUM            3             65
D316V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MAP7 MUTATED      2    8
  MAP7 WILD-TYPE  115   99
        clus
vv       MAP7 MUTATED MAP7 WILD-TYPE
  FEMALE            8             99
  MALE              2            115
D316V5, multiclass
                                clus
vv                               MAP7 MUTATED MAP7 WILD-TYPE
  COLON ADENOCARCINOMA                      3            125
  COLON MUCINOUS ADENOCARCINOMA             4             20
  RECTAL ADENOCARCINOMA                     3             54
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D316V6, multiclass
    clus
vv   MAP7 MUTATED MAP7 WILD-TYPE
  T1            1              8
  T2            2             45
  T3            6            144
  T4            1             16
D316V7, multiclass
    clus
vv   MAP7 MUTATED MAP7 WILD-TYPE
  N0            8            126
  N1            2             42
  N2            0             46
D316V8, multiclass
     clus
vv    MAP7 MUTATED MAP7 WILD-TYPE
  M0            10            179
  M1             0             31
  M1A            0              1
D316V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MAP7 MUTATED     10    0
  MAP7 WILD-TYPE  206    8
     clus
vv    MAP7 MUTATED MAP7 WILD-TYPE
  NO             0              8
  YES           10            206

Clustering(317) Variable = MARCH10 MUTATION ANALYSIS
D317V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"MARCH10 WILD-TYPE"   "MARCH10 MUTATED" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "MARCH10 MUTATED" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"MARCH10 WILD-TYPE"   "MARCH10 MUTATED" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE"   "MARCH10 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
  "MARCH10 MUTATED" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "MARCH10 MUTATED" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "MARCH10 MUTATED" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"MARCH10 WILD-TYPE"   "MARCH10 MUTATED" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "MARCH10 MUTATED" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"MARCH10 WILD-TYPE"   "MARCH10 MUTATED" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE"   "MARCH10 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
  "MARCH10 MUTATED" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "MARCH10 MUTATED" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "MARCH10 MUTATED" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"MARCH10 WILD-TYPE"   "MARCH10 MUTATED" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "MARCH10 MUTATED" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"MARCH10 WILD-TYPE"   "MARCH10 MUTATED" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE"   "MARCH10 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
  "MARCH10 MUTATED" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "MARCH10 MUTATED" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "MARCH10 MUTATED" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" "MARCH10 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D317V2, continuous
D317V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  MARCH10 MUTATED      8    1
  MARCH10 WILD-TYPE  146   67
        clus
vv       MARCH10 MUTATED MARCH10 WILD-TYPE
  COLON                8               146
  RECTUM               1                67
D317V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  MARCH10 MUTATED      4    5
  MARCH10 WILD-TYPE  113  102
        clus
vv       MARCH10 MUTATED MARCH10 WILD-TYPE
  FEMALE               5               102
  MALE                 4               113
D317V5, multiclass
                                clus
vv                               MARCH10 MUTATED MARCH10 WILD-TYPE
  COLON ADENOCARCINOMA                         7               121
  COLON MUCINOUS ADENOCARCINOMA                1                23
  RECTAL ADENOCARCINOMA                        1                56
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D317V6, multiclass
    clus
vv   MARCH10 MUTATED MARCH10 WILD-TYPE
  T1               0                 9
  T2               3                44
  T3               5               145
  T4               1                16
D317V7, multiclass
    clus
vv   MARCH10 MUTATED MARCH10 WILD-TYPE
  N0               9               125
  N1               0                44
  N2               0                46
D317V8, multiclass
     clus
vv    MARCH10 MUTATED MARCH10 WILD-TYPE
  M0                8               181
  M1                0                31
  M1A               0                 1
D317V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  MARCH10 MUTATED      9    0
  MARCH10 WILD-TYPE  207    8
     clus
vv    MARCH10 MUTATED MARCH10 WILD-TYPE
  NO                0                 8
  YES               9               207

Clustering(318) Variable = MLF1 MUTATION ANALYSIS
D318V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE"   "MLF1 MUTATED" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE"   "MLF1 MUTATED" "MLF1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"MLF1 WILD-TYPE"   "MLF1 MUTATED" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE"   "MLF1 MUTATED" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE"   "MLF1 MUTATED" "MLF1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"MLF1 WILD-TYPE"   "MLF1 MUTATED" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE"   "MLF1 MUTATED" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE"   "MLF1 MUTATED" "MLF1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"MLF1 WILD-TYPE"   "MLF1 MUTATED" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" "MLF1 WILD-TYPE" 
[1] "hr="     "9200000"
D318V2, continuous
D318V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MLF1 MUTATED      3    1
  MLF1 WILD-TYPE  151   67
        clus
vv       MLF1 MUTATED MLF1 WILD-TYPE
  COLON             3            151
  RECTUM            1             67
D318V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MLF1 MUTATED      2    2
  MLF1 WILD-TYPE  115  105
        clus
vv       MLF1 MUTATED MLF1 WILD-TYPE
  FEMALE            2            105
  MALE              2            115
D318V5, multiclass
                                clus
vv                               MLF1 MUTATED MLF1 WILD-TYPE
  COLON ADENOCARCINOMA                      2            126
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D318V6, multiclass
    clus
vv   MLF1 MUTATED MLF1 WILD-TYPE
  T1            0              9
  T2            1             46
  T3            1            149
  T4            2             15
D318V7, multiclass
    clus
vv   MLF1 MUTATED MLF1 WILD-TYPE
  N0            3            131
  N1            1             43
  N2            0             46
D318V8, multiclass
     clus
vv    MLF1 MUTATED MLF1 WILD-TYPE
  M0             4            185
  M1             0             31
  M1A            0              1
D318V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MLF1 MUTATED      4    0
  MLF1 WILD-TYPE  212    8
     clus
vv    MLF1 MUTATED MLF1 WILD-TYPE
  NO             0              8
  YES            4            212

Clustering(319) Variable = GRM7 MUTATION ANALYSIS
D319V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
  "GRM7 MUTATED" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE"   "GRM7 MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE"   "GRM7 MUTATED" "GRM7 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GRM7 WILD-TYPE"   "GRM7 MUTATED" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GRM7 WILD-TYPE"   "GRM7 MUTATED" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"GRM7 WILD-TYPE"   "GRM7 MUTATED" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE"   "GRM7 MUTATED" "GRM7 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "GRM7 MUTATED" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
  "GRM7 MUTATED" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE"   "GRM7 MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE"   "GRM7 MUTATED" "GRM7 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GRM7 WILD-TYPE"   "GRM7 MUTATED" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GRM7 WILD-TYPE"   "GRM7 MUTATED" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"GRM7 WILD-TYPE"   "GRM7 MUTATED" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE"   "GRM7 MUTATED" "GRM7 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "GRM7 MUTATED" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
  "GRM7 MUTATED" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE"   "GRM7 MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE"   "GRM7 MUTATED" "GRM7 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GRM7 WILD-TYPE"   "GRM7 MUTATED" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GRM7 WILD-TYPE"   "GRM7 MUTATED" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"GRM7 WILD-TYPE"   "GRM7 MUTATED" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE"   "GRM7 MUTATED" "GRM7 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "GRM7 MUTATED" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
[1] "hr=" "1.2"
D319V2, continuous
D319V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GRM7 MUTATED      8    3
  GRM7 WILD-TYPE  146   65
        clus
vv       GRM7 MUTATED GRM7 WILD-TYPE
  COLON             8            146
  RECTUM            3             65
D319V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GRM7 MUTATED      4    7
  GRM7 WILD-TYPE  113  100
        clus
vv       GRM7 MUTATED GRM7 WILD-TYPE
  FEMALE            7            100
  MALE              4            113
D319V5, multiclass
                                clus
vv                               GRM7 MUTATED GRM7 WILD-TYPE
  COLON ADENOCARCINOMA                      6            122
  COLON MUCINOUS ADENOCARCINOMA             2             22
  RECTAL ADENOCARCINOMA                     3             54
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D319V6, multiclass
    clus
vv   GRM7 MUTATED GRM7 WILD-TYPE
  T1            0              9
  T2            3             44
  T3            4            146
  T4            4             13
D319V7, multiclass
    clus
vv   GRM7 MUTATED GRM7 WILD-TYPE
  N0            8            126
  N1            0             44
  N2            3             43
D319V8, multiclass
     clus
vv    GRM7 MUTATED GRM7 WILD-TYPE
  M0             9            180
  M1             2             29
  M1A            0              1
D319V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GRM7 MUTATED     11    0
  GRM7 WILD-TYPE  205    8
     clus
vv    GRM7 MUTATED GRM7 WILD-TYPE
  NO             0              8
  YES           11            205

Clustering(320) Variable = CHST4 MUTATION ANALYSIS
D320V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CHST4 WILD-TYPE"   "CHST4 MUTATED" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE"   "CHST4 MUTATED" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE"   "CHST4 MUTATED" "CHST4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CHST4 MUTATED" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
  "CHST4 MUTATED" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CHST4 WILD-TYPE"   "CHST4 MUTATED" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE"   "CHST4 MUTATED" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE"   "CHST4 MUTATED" "CHST4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CHST4 MUTATED" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
  "CHST4 MUTATED" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CHST4 WILD-TYPE"   "CHST4 MUTATED" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE"   "CHST4 MUTATED" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE"   "CHST4 MUTATED" "CHST4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CHST4 MUTATED" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
  "CHST4 MUTATED" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D320V2, continuous
D320V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CHST4 MUTATED      5    2
  CHST4 WILD-TYPE  149   66
        clus
vv       CHST4 MUTATED CHST4 WILD-TYPE
  COLON              5             149
  RECTUM             2              66
D320V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CHST4 MUTATED      6    1
  CHST4 WILD-TYPE  111  106
        clus
vv       CHST4 MUTATED CHST4 WILD-TYPE
  FEMALE             1             106
  MALE               6             111
D320V5, multiclass
                                clus
vv                               CHST4 MUTATED CHST4 WILD-TYPE
  COLON ADENOCARCINOMA                       5             123
  COLON MUCINOUS ADENOCARCINOMA              0              24
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D320V6, multiclass
    clus
vv   CHST4 MUTATED CHST4 WILD-TYPE
  T1             0               9
  T2             3              44
  T3             4             146
  T4             0              17
D320V7, multiclass
    clus
vv   CHST4 MUTATED CHST4 WILD-TYPE
  N0             3             131
  N1             2              42
  N2             2              44
D320V8, multiclass
     clus
vv    CHST4 MUTATED CHST4 WILD-TYPE
  M0              5             184
  M1              2              29
  M1A             0               1
D320V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CHST4 MUTATED      7    0
  CHST4 WILD-TYPE  209    8
     clus
vv    CHST4 MUTATED CHST4 WILD-TYPE
  NO              0               8
  YES             7             209

Clustering(321) Variable = SLITRK2 MUTATION ANALYSIS
D321V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D321V2, continuous
D321V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLITRK2 MUTATED      7    3
  SLITRK2 WILD-TYPE  147   65
        clus
vv       SLITRK2 MUTATED SLITRK2 WILD-TYPE
  COLON                7               147
  RECTUM               3                65
D321V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLITRK2 MUTATED      4    6
  SLITRK2 WILD-TYPE  113  101
        clus
vv       SLITRK2 MUTATED SLITRK2 WILD-TYPE
  FEMALE               6               101
  MALE                 4               113
D321V5, multiclass
                                clus
vv                               SLITRK2 MUTATED SLITRK2 WILD-TYPE
  COLON ADENOCARCINOMA                         5               123
  COLON MUCINOUS ADENOCARCINOMA                2                22
  RECTAL ADENOCARCINOMA                        3                54
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D321V6, multiclass
    clus
vv   SLITRK2 MUTATED SLITRK2 WILD-TYPE
  T1               1                 8
  T2               2                45
  T3               5               145
  T4               2                15
D321V7, multiclass
    clus
vv   SLITRK2 MUTATED SLITRK2 WILD-TYPE
  N0               7               127
  N1               2                42
  N2               1                45
D321V8, multiclass
     clus
vv    SLITRK2 MUTATED SLITRK2 WILD-TYPE
  M0                9               180
  M1                0                31
  M1A               0                 1
D321V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLITRK2 MUTATED      9    1
  SLITRK2 WILD-TYPE  207    7
     clus
vv    SLITRK2 MUTATED SLITRK2 WILD-TYPE
  NO                1                 7
  YES               9               207

Clustering(322) Variable = VCAN MUTATION ANALYSIS
D322V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"VCAN WILD-TYPE" "VCAN WILD-TYPE"   "VCAN MUTATED" "VCAN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "VCAN MUTATED" "VCAN WILD-TYPE"   "VCAN MUTATED" "VCAN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE"   "VCAN MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE"   "VCAN MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "VCAN MUTATED" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"VCAN WILD-TYPE"   "VCAN MUTATED" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "VCAN MUTATED" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"VCAN WILD-TYPE"   "VCAN MUTATED" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "VCAN MUTATED" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"VCAN WILD-TYPE" "VCAN WILD-TYPE"   "VCAN MUTATED" "VCAN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "VCAN MUTATED" "VCAN WILD-TYPE"   "VCAN MUTATED" "VCAN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE"   "VCAN MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE"   "VCAN MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "VCAN MUTATED" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"VCAN WILD-TYPE"   "VCAN MUTATED" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "VCAN MUTATED" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"VCAN WILD-TYPE"   "VCAN MUTATED" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "VCAN MUTATED" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"VCAN WILD-TYPE" "VCAN WILD-TYPE"   "VCAN MUTATED" "VCAN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "VCAN MUTATED" "VCAN WILD-TYPE"   "VCAN MUTATED" "VCAN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE"   "VCAN MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE"   "VCAN MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "VCAN MUTATED" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"VCAN WILD-TYPE"   "VCAN MUTATED" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "VCAN MUTATED" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"VCAN WILD-TYPE"   "VCAN MUTATED" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "VCAN MUTATED" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
[1] "hr=" "3"  
D322V2, continuous
D322V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  VCAN MUTATED     14    5
  VCAN WILD-TYPE  140   63
        clus
vv       VCAN MUTATED VCAN WILD-TYPE
  COLON            14            140
  RECTUM            5             63
D322V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  VCAN MUTATED      9   10
  VCAN WILD-TYPE  108   97
        clus
vv       VCAN MUTATED VCAN WILD-TYPE
  FEMALE           10             97
  MALE              9            108
D322V5, multiclass
                                clus
vv                               VCAN MUTATED VCAN WILD-TYPE
  COLON ADENOCARCINOMA                     11            117
  COLON MUCINOUS ADENOCARCINOMA             2             22
  RECTAL ADENOCARCINOMA                     5             52
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D322V6, multiclass
    clus
vv   VCAN MUTATED VCAN WILD-TYPE
  T1            1              8
  T2            3             44
  T3           12            138
  T4            3             14
D322V7, multiclass
    clus
vv   VCAN MUTATED VCAN WILD-TYPE
  N0           14            120
  N1            3             41
  N2            2             44
D322V8, multiclass
     clus
vv    VCAN MUTATED VCAN WILD-TYPE
  M0            17            172
  M1             1             30
  M1A            0              1
D322V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  VCAN MUTATED     19    0
  VCAN WILD-TYPE  197    8
     clus
vv    VCAN MUTATED VCAN WILD-TYPE
  NO             0              8
  YES           19            197

Clustering(323) Variable = ZNF585A MUTATION ANALYSIS
D323V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE"   "ZNF585A MUTATED" "ZNF585A WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE"   "ZNF585A MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ZNF585A WILD-TYPE"   "ZNF585A MUTATED" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "ZNF585A MUTATED" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"ZNF585A WILD-TYPE"   "ZNF585A MUTATED" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "ZNF585A MUTATED" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE"   "ZNF585A MUTATED" "ZNF585A WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE"   "ZNF585A MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ZNF585A WILD-TYPE"   "ZNF585A MUTATED" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "ZNF585A MUTATED" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"ZNF585A WILD-TYPE"   "ZNF585A MUTATED" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "ZNF585A MUTATED" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE"   "ZNF585A MUTATED" "ZNF585A WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE"   "ZNF585A MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ZNF585A WILD-TYPE"   "ZNF585A MUTATED" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "ZNF585A MUTATED" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"ZNF585A WILD-TYPE"   "ZNF585A MUTATED" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "ZNF585A MUTATED" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
[1] "hr=" "2.1"
D323V2, continuous
D323V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZNF585A MUTATED      7    3
  ZNF585A WILD-TYPE  147   65
        clus
vv       ZNF585A MUTATED ZNF585A WILD-TYPE
  COLON                7               147
  RECTUM               3                65
D323V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZNF585A MUTATED      5    5
  ZNF585A WILD-TYPE  112  102
        clus
vv       ZNF585A MUTATED ZNF585A WILD-TYPE
  FEMALE               5               102
  MALE                 5               112
D323V5, multiclass
                                clus
vv                               ZNF585A MUTATED ZNF585A WILD-TYPE
  COLON ADENOCARCINOMA                         5               123
  COLON MUCINOUS ADENOCARCINOMA                2                22
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               1                 7
D323V6, multiclass
    clus
vv   ZNF585A MUTATED ZNF585A WILD-TYPE
  T1               1                 8
  T2               2                45
  T3               5               145
  T4               2                15
D323V7, multiclass
    clus
vv   ZNF585A MUTATED ZNF585A WILD-TYPE
  N0               8               126
  N1               1                43
  N2               1                45
D323V8, multiclass
     clus
vv    ZNF585A MUTATED ZNF585A WILD-TYPE
  M0                9               180
  M1                0                31
  M1A               0                 1
D323V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZNF585A MUTATED     10    0
  ZNF585A WILD-TYPE  206    8
     clus
vv    ZNF585A MUTATED ZNF585A WILD-TYPE
  NO                0                 8
  YES              10               206

Clustering(324) Variable = OR6T1 MUTATION ANALYSIS
D324V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE"   "OR6T1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "OR6T1 MUTATED" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "OR6T1 MUTATED" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE"   "OR6T1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "OR6T1 MUTATED" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "OR6T1 MUTATED" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE"   "OR6T1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "OR6T1 MUTATED" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "OR6T1 MUTATED" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
[1] "hr="     "2.5e+07"
D324V2, continuous
D324V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6T1 MUTATED      6    0
  OR6T1 WILD-TYPE  148   68
        clus
vv       OR6T1 MUTATED OR6T1 WILD-TYPE
  COLON              6             148
  RECTUM             0              68
D324V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6T1 MUTATED      4    2
  OR6T1 WILD-TYPE  113  105
        clus
vv       OR6T1 MUTATED OR6T1 WILD-TYPE
  FEMALE             2             105
  MALE               4             113
D324V5, multiclass
                                clus
vv                               OR6T1 MUTATED OR6T1 WILD-TYPE
  COLON ADENOCARCINOMA                       5             123
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      0              57
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D324V6, multiclass
    clus
vv   OR6T1 MUTATED OR6T1 WILD-TYPE
  T1             0               9
  T2             1              46
  T3             4             146
  T4             1              16
D324V7, multiclass
    clus
vv   OR6T1 MUTATED OR6T1 WILD-TYPE
  N0             5             129
  N1             0              44
  N2             1              45
D324V8, multiclass
     clus
vv    OR6T1 MUTATED OR6T1 WILD-TYPE
  M0              4             185
  M1              1              30
  M1A             0               1
D324V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6T1 MUTATED      6    0
  OR6T1 WILD-TYPE  210    8
     clus
vv    OR6T1 MUTATED OR6T1 WILD-TYPE
  NO              0               8
  YES             6             210

Clustering(325) Variable = PTPRT MUTATION ANALYSIS
D325V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE"   "PTPRT MUTATED" "PTPRT WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PTPRT WILD-TYPE"   "PTPRT MUTATED" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE"   "PTPRT MUTATED" "PTPRT WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PTPRT WILD-TYPE"   "PTPRT MUTATED" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PTPRT WILD-TYPE"   "PTPRT MUTATED" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
  "PTPRT MUTATED" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PTPRT MUTATED" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "PTPRT MUTATED" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE"   "PTPRT MUTATED" "PTPRT WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PTPRT WILD-TYPE"   "PTPRT MUTATED" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE"   "PTPRT MUTATED" "PTPRT WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PTPRT WILD-TYPE"   "PTPRT MUTATED" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PTPRT WILD-TYPE"   "PTPRT MUTATED" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
  "PTPRT MUTATED" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PTPRT MUTATED" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "PTPRT MUTATED" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE"   "PTPRT MUTATED" "PTPRT WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PTPRT WILD-TYPE"   "PTPRT MUTATED" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE"   "PTPRT MUTATED" "PTPRT WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PTPRT WILD-TYPE"   "PTPRT MUTATED" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PTPRT WILD-TYPE"   "PTPRT MUTATED" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
  "PTPRT MUTATED" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PTPRT MUTATED" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "PTPRT MUTATED" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
[1] "hr=" "1.3"
D325V2, continuous
D325V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PTPRT MUTATED     10    4
  PTPRT WILD-TYPE  144   64
        clus
vv       PTPRT MUTATED PTPRT WILD-TYPE
  COLON             10             144
  RECTUM             4              64
D325V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PTPRT MUTATED      6    8
  PTPRT WILD-TYPE  111   99
        clus
vv       PTPRT MUTATED PTPRT WILD-TYPE
  FEMALE             8              99
  MALE               6             111
D325V5, multiclass
                                clus
vv                               PTPRT MUTATED PTPRT WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D325V6, multiclass
    clus
vv   PTPRT MUTATED PTPRT WILD-TYPE
  T1             1               8
  T2             3              44
  T3             8             142
  T4             2              15
D325V7, multiclass
    clus
vv   PTPRT MUTATED PTPRT WILD-TYPE
  N0            12             122
  N1             0              44
  N2             2              44
D325V8, multiclass
     clus
vv    PTPRT MUTATED PTPRT WILD-TYPE
  M0             13             176
  M1              1              30
  M1A             0               1
D325V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PTPRT MUTATED     14    0
  PTPRT WILD-TYPE  202    8
     clus
vv    PTPRT MUTATED PTPRT WILD-TYPE
  NO              0               8
  YES            14             202

Clustering(326) Variable = RYR2 MUTATION ANALYSIS
D326V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RYR2 WILD-TYPE"   "RYR2 MUTATED"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RYR2 WILD-TYPE"   "RYR2 MUTATED"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RYR2 WILD-TYPE"   "RYR2 MUTATED"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
[1] "hr=" "1.2"
D326V2, continuous
D326V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RYR2 MUTATED     22    7
  RYR2 WILD-TYPE  132   61
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  COLON            22            132
  RECTUM            7             61
D326V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RYR2 MUTATED     13   16
  RYR2 WILD-TYPE  104   91
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  FEMALE           16             91
  MALE             13            104
D326V5, multiclass
                                clus
vv                               RYR2 MUTATED RYR2 WILD-TYPE
  COLON ADENOCARCINOMA                     18            110
  COLON MUCINOUS ADENOCARCINOMA             4             20
  RECTAL ADENOCARCINOMA                     7             50
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D326V6, multiclass
    clus
vv   RYR2 MUTATED RYR2 WILD-TYPE
  T1            2              7
  T2            3             44
  T3           20            130
  T4            4             13
D326V7, multiclass
    clus
vv   RYR2 MUTATED RYR2 WILD-TYPE
  N0           16            118
  N1            6             38
  N2            7             39
D326V8, multiclass
     clus
vv    RYR2 MUTATED RYR2 WILD-TYPE
  M0            25            164
  M1             3             28
  M1A            0              1
D326V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RYR2 MUTATED     27    2
  RYR2 WILD-TYPE  189    6
     clus
vv    RYR2 MUTATED RYR2 WILD-TYPE
  NO             2              6
  YES           27            189

Clustering(327) Variable = CHST9 MUTATION ANALYSIS
D327V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE"   "CHST9 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE"   "CHST9 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CHST9 WILD-TYPE"   "CHST9 MUTATED" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE"   "CHST9 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CHST9 WILD-TYPE"   "CHST9 MUTATED" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CHST9 MUTATED" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE"   "CHST9 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE"   "CHST9 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CHST9 WILD-TYPE"   "CHST9 MUTATED" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE"   "CHST9 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CHST9 WILD-TYPE"   "CHST9 MUTATED" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CHST9 MUTATED" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE"   "CHST9 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE"   "CHST9 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CHST9 WILD-TYPE"   "CHST9 MUTATED" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE"   "CHST9 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CHST9 WILD-TYPE"   "CHST9 MUTATED" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CHST9 MUTATED" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
[1] "hr=" "3"  
D327V2, continuous
D327V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CHST9 MUTATED      5    3
  CHST9 WILD-TYPE  149   65
        clus
vv       CHST9 MUTATED CHST9 WILD-TYPE
  COLON              5             149
  RECTUM             3              65
D327V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CHST9 MUTATED      5    3
  CHST9 WILD-TYPE  112  104
        clus
vv       CHST9 MUTATED CHST9 WILD-TYPE
  FEMALE             3             104
  MALE               5             112
D327V5, multiclass
                                clus
vv                               CHST9 MUTATED CHST9 WILD-TYPE
  COLON ADENOCARCINOMA                       2             126
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D327V6, multiclass
    clus
vv   CHST9 MUTATED CHST9 WILD-TYPE
  T1             1               8
  T2             2              45
  T3             4             146
  T4             1              16
D327V7, multiclass
    clus
vv   CHST9 MUTATED CHST9 WILD-TYPE
  N0             6             128
  N1             1              43
  N2             1              45
D327V8, multiclass
     clus
vv    CHST9 MUTATED CHST9 WILD-TYPE
  M0              6             183
  M1              1              30
  M1A             0               1
D327V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CHST9 MUTATED      8    0
  CHST9 WILD-TYPE  208    8
     clus
vv    CHST9 MUTATED CHST9 WILD-TYPE
  NO              0               8
  YES             8             208

Clustering(328) Variable = CTSO MUTATION ANALYSIS
D328V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "CTSO MUTATED" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CTSO WILD-TYPE"   "CTSO MUTATED" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "CTSO MUTATED" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "CTSO MUTATED" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "CTSO MUTATED" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CTSO WILD-TYPE"   "CTSO MUTATED" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "CTSO MUTATED" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "CTSO MUTATED" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "CTSO MUTATED" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CTSO WILD-TYPE"   "CTSO MUTATED" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "CTSO MUTATED" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "CTSO MUTATED" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
[1] "hr="     "2.6e+07"
D328V2, continuous
D328V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CTSO MUTATED      4    2
  CTSO WILD-TYPE  150   66
        clus
vv       CTSO MUTATED CTSO WILD-TYPE
  COLON             4            150
  RECTUM            2             66
D328V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CTSO MUTATED      5    1
  CTSO WILD-TYPE  112  106
        clus
vv       CTSO MUTATED CTSO WILD-TYPE
  FEMALE            1            106
  MALE              5            112
D328V5, multiclass
                                clus
vv                               CTSO MUTATED CTSO WILD-TYPE
  COLON ADENOCARCINOMA                      4            124
  COLON MUCINOUS ADENOCARCINOMA             0             24
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D328V6, multiclass
    clus
vv   CTSO MUTATED CTSO WILD-TYPE
  T1            0              9
  T2            1             46
  T3            5            145
  T4            0             17
D328V7, multiclass
    clus
vv   CTSO MUTATED CTSO WILD-TYPE
  N0            4            130
  N1            1             43
  N2            1             45
D328V8, multiclass
     clus
vv    CTSO MUTATED CTSO WILD-TYPE
  M0             5            184
  M1             1             30
  M1A            0              1
D328V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CTSO MUTATED      6    0
  CTSO WILD-TYPE  210    8
     clus
vv    CTSO MUTATED CTSO WILD-TYPE
  NO             0              8
  YES            6            210

Clustering(329) Variable = DOK5 MUTATION ANALYSIS
D329V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE"   "DOK5 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
  "DOK5 MUTATED" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DOK5 WILD-TYPE"   "DOK5 MUTATED" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE"   "DOK5 MUTATED" "DOK5 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE"   "DOK5 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
  "DOK5 MUTATED" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DOK5 WILD-TYPE"   "DOK5 MUTATED" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE"   "DOK5 MUTATED" "DOK5 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE"   "DOK5 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
  "DOK5 MUTATED" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DOK5 WILD-TYPE"   "DOK5 MUTATED" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE"   "DOK5 MUTATED" "DOK5 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
[1] "hr="     "9300000"
D329V2, continuous
D329V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DOK5 MUTATED      4    2
  DOK5 WILD-TYPE  150   66
        clus
vv       DOK5 MUTATED DOK5 WILD-TYPE
  COLON             4            150
  RECTUM            2             66
D329V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DOK5 MUTATED      1    5
  DOK5 WILD-TYPE  116  102
        clus
vv       DOK5 MUTATED DOK5 WILD-TYPE
  FEMALE            5            102
  MALE              1            116
D329V5, multiclass
                                clus
vv                               DOK5 MUTATED DOK5 WILD-TYPE
  COLON ADENOCARCINOMA                      2            126
  COLON MUCINOUS ADENOCARCINOMA             2             22
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            1              7
D329V6, multiclass
    clus
vv   DOK5 MUTATED DOK5 WILD-TYPE
  T1            0              9
  T2            1             46
  T3            5            145
  T4            0             17
D329V7, multiclass
    clus
vv   DOK5 MUTATED DOK5 WILD-TYPE
  N0            4            130
  N1            0             44
  N2            2             44
D329V8, multiclass
     clus
vv    DOK5 MUTATED DOK5 WILD-TYPE
  M0             5            184
  M1             1             30
  M1A            0              1
D329V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DOK5 MUTATED      6    0
  DOK5 WILD-TYPE  210    8
     clus
vv    DOK5 MUTATED DOK5 WILD-TYPE
  NO             0              8
  YES            6            210

Clustering(330) Variable = OR5W2 MUTATION ANALYSIS
D330V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "OR5W2 MUTATED" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR5W2 MUTATED" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OR5W2 MUTATED" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "OR5W2 MUTATED" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR5W2 MUTATED" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OR5W2 MUTATED" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "OR5W2 MUTATED" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR5W2 MUTATED" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OR5W2 MUTATED" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
[1] "hr=" "1.2"
D330V2, continuous
D330V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5W2 MUTATED      5    2
  OR5W2 WILD-TYPE  149   66
        clus
vv       OR5W2 MUTATED OR5W2 WILD-TYPE
  COLON              5             149
  RECTUM             2              66
D330V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5W2 MUTATED      4    3
  OR5W2 WILD-TYPE  113  104
        clus
vv       OR5W2 MUTATED OR5W2 WILD-TYPE
  FEMALE             3             104
  MALE               4             113
D330V5, multiclass
                                clus
vv                               OR5W2 MUTATED OR5W2 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D330V6, multiclass
    clus
vv   OR5W2 MUTATED OR5W2 WILD-TYPE
  T1             0               9
  T2             1              46
  T3             4             146
  T4             2              15
D330V7, multiclass
    clus
vv   OR5W2 MUTATED OR5W2 WILD-TYPE
  N0             5             129
  N1             1              43
  N2             1              45
D330V8, multiclass
     clus
vv    OR5W2 MUTATED OR5W2 WILD-TYPE
  M0              6             183
  M1              1              30
  M1A             0               1
D330V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5W2 MUTATED      7    0
  OR5W2 WILD-TYPE  209    8
     clus
vv    OR5W2 MUTATED OR5W2 WILD-TYPE
  NO              0               8
  YES             7             209

Clustering(331) Variable = DCC MUTATION ANALYSIS
D331V1, survival
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE"   "DCC MUTATED" "DCC WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"DCC WILD-TYPE" "DCC WILD-TYPE"   "DCC MUTATED"   "DCC MUTATED" "DCC WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"DCC WILD-TYPE" "DCC WILD-TYPE"   "DCC MUTATED" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"DCC WILD-TYPE"   "DCC MUTATED" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE"   "DCC MUTATED" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"DCC WILD-TYPE" "DCC WILD-TYPE"   "DCC MUTATED" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "DCC MUTATED" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE"   "DCC MUTATED" "DCC WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"DCC WILD-TYPE" "DCC WILD-TYPE"   "DCC MUTATED"   "DCC MUTATED" "DCC WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"DCC WILD-TYPE" "DCC WILD-TYPE"   "DCC MUTATED" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"DCC WILD-TYPE"   "DCC MUTATED" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE"   "DCC MUTATED" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"DCC WILD-TYPE" "DCC WILD-TYPE"   "DCC MUTATED" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "DCC MUTATED" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE"   "DCC MUTATED" "DCC WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"DCC WILD-TYPE" "DCC WILD-TYPE"   "DCC MUTATED"   "DCC MUTATED" "DCC WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"DCC WILD-TYPE" "DCC WILD-TYPE"   "DCC MUTATED" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"DCC WILD-TYPE"   "DCC MUTATED" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE"   "DCC MUTATED" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"DCC WILD-TYPE" "DCC WILD-TYPE"   "DCC MUTATED" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "DCC MUTATED" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" "DCC WILD-TYPE" 
[1] "hr="     "2.7e+07"
D331V2, continuous
D331V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  DCC MUTATED     12    1
  DCC WILD-TYPE  142   67
        clus
vv       DCC MUTATED DCC WILD-TYPE
  COLON           12           142
  RECTUM           1            67
D331V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  DCC MUTATED      5    8
  DCC WILD-TYPE  112   99
        clus
vv       DCC MUTATED DCC WILD-TYPE
  FEMALE           8            99
  MALE             5           112
D331V5, multiclass
                                clus
vv                               DCC MUTATED DCC WILD-TYPE
  COLON ADENOCARCINOMA                     9           119
  COLON MUCINOUS ADENOCARCINOMA            3            21
  RECTAL ADENOCARCINOMA                    1            56
  RECTAL MUCINOUS ADENOCARCINOMA           0             8
D331V6, multiclass
    clus
vv   DCC MUTATED DCC WILD-TYPE
  T1           0             9
  T2           6            41
  T3           5           145
  T4           1            16
D331V7, multiclass
    clus
vv   DCC MUTATED DCC WILD-TYPE
  N0          11           123
  N1           1            43
  N2           1            45
D331V8, multiclass
     clus
vv    DCC MUTATED DCC WILD-TYPE
  M0           13           176
  M1            0            31
  M1A           0             1
D331V9, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  DCC MUTATED     12    1
  DCC WILD-TYPE  204    7
     clus
vv    DCC MUTATED DCC WILD-TYPE
  NO            1             7
  YES          12           204

Clustering(332) Variable = PCDHA13 MUTATION ANALYSIS
D332V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
[1] "hr=" "2.3"
D332V2, continuous
D332V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PCDHA13 MUTATED      8    6
  PCDHA13 WILD-TYPE  146   62
        clus
vv       PCDHA13 MUTATED PCDHA13 WILD-TYPE
  COLON                8               146
  RECTUM               6                62
D332V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PCDHA13 MUTATED      7    7
  PCDHA13 WILD-TYPE  110  100
        clus
vv       PCDHA13 MUTATED PCDHA13 WILD-TYPE
  FEMALE               7               100
  MALE                 7               110
D332V5, multiclass
                                clus
vv                               PCDHA13 MUTATED PCDHA13 WILD-TYPE
  COLON ADENOCARCINOMA                         5               123
  COLON MUCINOUS ADENOCARCINOMA                3                21
  RECTAL ADENOCARCINOMA                        5                52
  RECTAL MUCINOUS ADENOCARCINOMA               1                 7
D332V6, multiclass
    clus
vv   PCDHA13 MUTATED PCDHA13 WILD-TYPE
  T1               0                 9
  T2               1                46
  T3              12               138
  T4               1                16
D332V7, multiclass
    clus
vv   PCDHA13 MUTATED PCDHA13 WILD-TYPE
  N0               9               125
  N1               3                41
  N2               2                44
D332V8, multiclass
     clus
vv    PCDHA13 MUTATED PCDHA13 WILD-TYPE
  M0               12               177
  M1                2                29
  M1A               0                 1
D332V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PCDHA13 MUTATED     14    0
  PCDHA13 WILD-TYPE  202    8
     clus
vv    PCDHA13 MUTATED PCDHA13 WILD-TYPE
  NO                0                 8
  YES              14               202

Clustering(333) Variable = F9 MUTATION ANALYSIS
D333V1, survival
  TCGA-A6-2670   TCGA-A6-2672   TCGA-A6-2674   TCGA-A6-2676   TCGA-A6-2677 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-A6-2678   TCGA-A6-2683   TCGA-A6-3807   TCGA-A6-3808   TCGA-A6-3810 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-3518   TCGA-AA-3526   TCGA-AA-3555   TCGA-AA-3562   TCGA-AA-3666 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-3679   TCGA-AA-3685   TCGA-AA-3710   TCGA-AA-3715   TCGA-AA-3811 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-3818   TCGA-AA-3837   TCGA-AA-3842   TCGA-AA-3844   TCGA-AA-3846 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-3848   TCGA-AA-3854   TCGA-AA-3877   TCGA-AA-3939   TCGA-AA-3941 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-3947   TCGA-AA-3949   TCGA-AA-3952   TCGA-AA-3966   TCGA-AA-3975 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-3977   TCGA-AA-3986   TCGA-AA-A004   TCGA-AA-A00A   TCGA-AA-A00D 
  "F9 MUTATED" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-A00E   TCGA-AA-A00F   TCGA-AA-A00J   TCGA-AA-A00K   TCGA-AA-A00L 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-A00N   TCGA-AA-A00O   TCGA-AA-A00Q   TCGA-AA-A00R   TCGA-AA-A00U 
  "F9 MUTATED" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-A00W   TCGA-AA-A00Z   TCGA-AA-A010   TCGA-AA-A017   TCGA-AA-A01D 
"F9 WILD-TYPE" "F9 WILD-TYPE"   "F9 MUTATED" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-A01F   TCGA-AA-A01G   TCGA-AA-A01I   TCGA-AA-A01K   TCGA-AA-A01P 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-A01Q   TCGA-AA-A01R   TCGA-AA-A01S   TCGA-AA-A01T   TCGA-AA-A01V 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-A01X   TCGA-AA-A01Z   TCGA-AA-A024   TCGA-AA-A029   TCGA-AA-A02F 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-A02H   TCGA-AA-A02J   TCGA-AA-A02O   TCGA-AA-A02W   TCGA-AA-A02Y 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-A03F   TCGA-AA-A03J   TCGA-AY-4070   TCGA-AY-4071   TCGA-AF-2689 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AF-2691   TCGA-AF-2692   TCGA-AF-3400   TCGA-AF-3913   TCGA-AG-3581 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AG-3582   TCGA-AG-3583   TCGA-AG-3587   TCGA-AG-3599   TCGA-AG-3726 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AG-3727   TCGA-AG-3878   TCGA-AG-3887   TCGA-AG-3892   TCGA-AG-3893 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AG-3894   TCGA-AG-3999   TCGA-AG-4001   TCGA-AG-4007   TCGA-AG-4008 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AG-A002   TCGA-AG-A008   TCGA-AG-A00C   TCGA-AG-A00H   TCGA-AG-A00Y 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AG-A011   TCGA-AG-A014   TCGA-AG-A015   TCGA-AG-A016   TCGA-AG-A01L 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AG-A01W   TCGA-AG-A01Y   TCGA-AG-A020   TCGA-AG-A025   TCGA-AG-A026 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AG-A02G   TCGA-AG-A02N   TCGA-AG-A02X   TCGA-AG-A032   TCGA-AG-A036 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-A6-2670   TCGA-A6-2672   TCGA-A6-2674   TCGA-A6-2676   TCGA-A6-2677 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-A6-2678   TCGA-A6-2683   TCGA-A6-3807   TCGA-A6-3808   TCGA-A6-3810 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-3518   TCGA-AA-3526   TCGA-AA-3555   TCGA-AA-3562   TCGA-AA-3666 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-3679   TCGA-AA-3685   TCGA-AA-3710   TCGA-AA-3715   TCGA-AA-3811 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-3818   TCGA-AA-3837   TCGA-AA-3842   TCGA-AA-3844   TCGA-AA-3846 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-3848   TCGA-AA-3854   TCGA-AA-3877   TCGA-AA-3939   TCGA-AA-3941 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-3947   TCGA-AA-3949   TCGA-AA-3952   TCGA-AA-3966   TCGA-AA-3975 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-3977   TCGA-AA-3986   TCGA-AA-A004   TCGA-AA-A00A   TCGA-AA-A00D 
  "F9 MUTATED" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-A00E   TCGA-AA-A00F   TCGA-AA-A00J   TCGA-AA-A00K   TCGA-AA-A00L 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-A00N   TCGA-AA-A00O   TCGA-AA-A00Q   TCGA-AA-A00R   TCGA-AA-A00U 
  "F9 MUTATED" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-A00W   TCGA-AA-A00Z   TCGA-AA-A010   TCGA-AA-A017   TCGA-AA-A01D 
"F9 WILD-TYPE" "F9 WILD-TYPE"   "F9 MUTATED" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-A01F   TCGA-AA-A01G   TCGA-AA-A01I   TCGA-AA-A01K   TCGA-AA-A01P 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-A01Q   TCGA-AA-A01R   TCGA-AA-A01S   TCGA-AA-A01T   TCGA-AA-A01V 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-A01X   TCGA-AA-A01Z   TCGA-AA-A024   TCGA-AA-A029   TCGA-AA-A02F 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-A02H   TCGA-AA-A02J   TCGA-AA-A02O   TCGA-AA-A02W   TCGA-AA-A02Y 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-A03F   TCGA-AA-A03J   TCGA-AY-4070   TCGA-AY-4071   TCGA-AF-2689 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AF-2691   TCGA-AF-2692   TCGA-AF-3400   TCGA-AF-3913   TCGA-AG-3581 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AG-3582   TCGA-AG-3583   TCGA-AG-3587   TCGA-AG-3599   TCGA-AG-3726 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AG-3727   TCGA-AG-3878   TCGA-AG-3887   TCGA-AG-3892   TCGA-AG-3893 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AG-3894   TCGA-AG-3999   TCGA-AG-4001   TCGA-AG-4007   TCGA-AG-4008 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AG-A002   TCGA-AG-A008   TCGA-AG-A00C   TCGA-AG-A00H   TCGA-AG-A00Y 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AG-A011   TCGA-AG-A014   TCGA-AG-A015   TCGA-AG-A016   TCGA-AG-A01L 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AG-A01W   TCGA-AG-A01Y   TCGA-AG-A020   TCGA-AG-A025   TCGA-AG-A026 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AG-A02G   TCGA-AG-A02N   TCGA-AG-A02X   TCGA-AG-A032   TCGA-AG-A036 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-A6-2670   TCGA-A6-2672   TCGA-A6-2674   TCGA-A6-2676   TCGA-A6-2677 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-A6-2678   TCGA-A6-2683   TCGA-A6-3807   TCGA-A6-3808   TCGA-A6-3810 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-3518   TCGA-AA-3526   TCGA-AA-3555   TCGA-AA-3562   TCGA-AA-3666 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-3679   TCGA-AA-3685   TCGA-AA-3710   TCGA-AA-3715   TCGA-AA-3811 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-3818   TCGA-AA-3837   TCGA-AA-3842   TCGA-AA-3844   TCGA-AA-3846 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-3848   TCGA-AA-3854   TCGA-AA-3877   TCGA-AA-3939   TCGA-AA-3941 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-3947   TCGA-AA-3949   TCGA-AA-3952   TCGA-AA-3966   TCGA-AA-3975 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-3977   TCGA-AA-3986   TCGA-AA-A004   TCGA-AA-A00A   TCGA-AA-A00D 
  "F9 MUTATED" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-A00E   TCGA-AA-A00F   TCGA-AA-A00J   TCGA-AA-A00K   TCGA-AA-A00L 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-A00N   TCGA-AA-A00O   TCGA-AA-A00Q   TCGA-AA-A00R   TCGA-AA-A00U 
  "F9 MUTATED" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-A00W   TCGA-AA-A00Z   TCGA-AA-A010   TCGA-AA-A017   TCGA-AA-A01D 
"F9 WILD-TYPE" "F9 WILD-TYPE"   "F9 MUTATED" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-A01F   TCGA-AA-A01G   TCGA-AA-A01I   TCGA-AA-A01K   TCGA-AA-A01P 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-A01Q   TCGA-AA-A01R   TCGA-AA-A01S   TCGA-AA-A01T   TCGA-AA-A01V 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-A01X   TCGA-AA-A01Z   TCGA-AA-A024   TCGA-AA-A029   TCGA-AA-A02F 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-A02H   TCGA-AA-A02J   TCGA-AA-A02O   TCGA-AA-A02W   TCGA-AA-A02Y 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AA-A03F   TCGA-AA-A03J   TCGA-AY-4070   TCGA-AY-4071   TCGA-AF-2689 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AF-2691   TCGA-AF-2692   TCGA-AF-3400   TCGA-AF-3913   TCGA-AG-3581 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AG-3582   TCGA-AG-3583   TCGA-AG-3587   TCGA-AG-3599   TCGA-AG-3726 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AG-3727   TCGA-AG-3878   TCGA-AG-3887   TCGA-AG-3892   TCGA-AG-3893 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AG-3894   TCGA-AG-3999   TCGA-AG-4001   TCGA-AG-4007   TCGA-AG-4008 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AG-A002   TCGA-AG-A008   TCGA-AG-A00C   TCGA-AG-A00H   TCGA-AG-A00Y 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AG-A011   TCGA-AG-A014   TCGA-AG-A015   TCGA-AG-A016   TCGA-AG-A01L 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AG-A01W   TCGA-AG-A01Y   TCGA-AG-A020   TCGA-AG-A025   TCGA-AG-A026 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
  TCGA-AG-A02G   TCGA-AG-A02N   TCGA-AG-A02X   TCGA-AG-A032   TCGA-AG-A036 
"F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" "F9 WILD-TYPE" 
[1] "hr=" "3.7"
D333V2, continuous
D333V3, binary
[1] "tbl2"
              cls
clus           [,1] [,2]
  F9 MUTATED      6    0
  F9 WILD-TYPE  148   68
        clus
vv       F9 MUTATED F9 WILD-TYPE
  COLON           6          148
  RECTUM          0           68
D333V4, binary
[1] "tbl2"
              cls
clus           [,1] [,2]
  F9 MUTATED      3    3
  F9 WILD-TYPE  114  104
        clus
vv       F9 MUTATED F9 WILD-TYPE
  FEMALE          3          104
  MALE            3          114
D333V5, multiclass
                                clus
vv                               F9 MUTATED F9 WILD-TYPE
  COLON ADENOCARCINOMA                    3          125
  COLON MUCINOUS ADENOCARCINOMA           3           21
  RECTAL ADENOCARCINOMA                   0           57
  RECTAL MUCINOUS ADENOCARCINOMA          0            8
D333V6, multiclass
    clus
vv   F9 MUTATED F9 WILD-TYPE
  T1          0            9
  T2          2           45
  T3          2          148
  T4          2           15
D333V7, multiclass
    clus
vv   F9 MUTATED F9 WILD-TYPE
  N0          6          128
  N1          0           44
  N2          0           46
D333V8, multiclass
     clus
vv    F9 MUTATED F9 WILD-TYPE
  M0           5          184
  M1           0           31
  M1A          0            1
D333V9, binary
[1] "tbl2"
              cls
clus           [,1] [,2]
  F9 MUTATED      6    0
  F9 WILD-TYPE  210    8
     clus
vv    F9 MUTATED F9 WILD-TYPE
  NO           0            8
  YES          6          210

Clustering(334) Variable = SLC25A13 MUTATION ANALYSIS
D334V1, survival
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
  "SLC25A13 MUTATED" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"SLC25A13 WILD-TYPE"   "SLC25A13 MUTATED" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "SLC25A13 MUTATED" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"SLC25A13 WILD-TYPE"   "SLC25A13 MUTATED" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"SLC25A13 WILD-TYPE"   "SLC25A13 MUTATED" "SLC25A13 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
  "SLC25A13 MUTATED" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
  "SLC25A13 MUTATED" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"SLC25A13 WILD-TYPE"   "SLC25A13 MUTATED" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "SLC25A13 MUTATED" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"SLC25A13 WILD-TYPE"   "SLC25A13 MUTATED" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"SLC25A13 WILD-TYPE"   "SLC25A13 MUTATED" "SLC25A13 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
  "SLC25A13 MUTATED" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
  "SLC25A13 MUTATED" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"SLC25A13 WILD-TYPE"   "SLC25A13 MUTATED" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "SLC25A13 MUTATED" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"SLC25A13 WILD-TYPE"   "SLC25A13 MUTATED" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"SLC25A13 WILD-TYPE"   "SLC25A13 MUTATED" "SLC25A13 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
  "SLC25A13 MUTATED" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
[1] "hr=" "1.6"
D334V2, continuous
D334V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  SLC25A13 MUTATED      6    2
  SLC25A13 WILD-TYPE  148   66
        clus
vv       SLC25A13 MUTATED SLC25A13 WILD-TYPE
  COLON                 6                148
  RECTUM                2                 66
D334V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  SLC25A13 MUTATED      6    2
  SLC25A13 WILD-TYPE  111  105
        clus
vv       SLC25A13 MUTATED SLC25A13 WILD-TYPE
  FEMALE                2                105
  MALE                  6                111
D334V5, multiclass
                                clus
vv                               SLC25A13 MUTATED SLC25A13 WILD-TYPE
  COLON ADENOCARCINOMA                          5                123
  COLON MUCINOUS ADENOCARCINOMA                 1                 23
  RECTAL ADENOCARCINOMA                         2                 55
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
D334V6, multiclass
    clus
vv   SLC25A13 MUTATED SLC25A13 WILD-TYPE
  T1                0                  9
  T2                3                 44
  T3                3                147
  T4                2                 15
D334V7, multiclass
    clus
vv   SLC25A13 MUTATED SLC25A13 WILD-TYPE
  N0                6                128
  N1                0                 44
  N2                2                 44
D334V8, multiclass
     clus
vv    SLC25A13 MUTATED SLC25A13 WILD-TYPE
  M0                 8                181
  M1                 0                 31
  M1A                0                  1
D334V9, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  SLC25A13 MUTATED      8    0
  SLC25A13 WILD-TYPE  208    8
     clus
vv    SLC25A13 MUTATED SLC25A13 WILD-TYPE
  NO                 0                  8
  YES                8                208

Clustering(335) Variable = GALNTL5 MUTATION ANALYSIS
D335V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE"   "GALNTL5 MUTATED" "GALNTL5 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE"   "GALNTL5 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"GALNTL5 WILD-TYPE"   "GALNTL5 MUTATED" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "GALNTL5 MUTATED" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"GALNTL5 WILD-TYPE"   "GALNTL5 MUTATED" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "GALNTL5 MUTATED" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE"   "GALNTL5 MUTATED" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE"   "GALNTL5 MUTATED" "GALNTL5 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE"   "GALNTL5 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"GALNTL5 WILD-TYPE"   "GALNTL5 MUTATED" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "GALNTL5 MUTATED" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"GALNTL5 WILD-TYPE"   "GALNTL5 MUTATED" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "GALNTL5 MUTATED" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE"   "GALNTL5 MUTATED" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE"   "GALNTL5 MUTATED" "GALNTL5 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE"   "GALNTL5 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"GALNTL5 WILD-TYPE"   "GALNTL5 MUTATED" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "GALNTL5 MUTATED" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"GALNTL5 WILD-TYPE"   "GALNTL5 MUTATED" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "GALNTL5 MUTATED" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE" "GALNTL5 WILD-TYPE"   "GALNTL5 MUTATED" 
[1] "hr=" "1.1"
D335V2, continuous
D335V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  GALNTL5 MUTATED      5    3
  GALNTL5 WILD-TYPE  149   65
        clus
vv       GALNTL5 MUTATED GALNTL5 WILD-TYPE
  COLON                5               149
  RECTUM               3                65
D335V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  GALNTL5 MUTATED      4    4
  GALNTL5 WILD-TYPE  113  103
        clus
vv       GALNTL5 MUTATED GALNTL5 WILD-TYPE
  FEMALE               4               103
  MALE                 4               113
D335V5, multiclass
                                clus
vv                               GALNTL5 MUTATED GALNTL5 WILD-TYPE
  COLON ADENOCARCINOMA                         3               125
  COLON MUCINOUS ADENOCARCINOMA                2                22
  RECTAL ADENOCARCINOMA                        3                54
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D335V6, multiclass
    clus
vv   GALNTL5 MUTATED GALNTL5 WILD-TYPE
  T1               1                 8
  T2               2                45
  T3               2               148
  T4               3                14
D335V7, multiclass
    clus
vv   GALNTL5 MUTATED GALNTL5 WILD-TYPE
  N0               7               127
  N1               0                44
  N2               1                45
D335V8, multiclass
     clus
vv    GALNTL5 MUTATED GALNTL5 WILD-TYPE
  M0                7               182
  M1                0                31
  M1A               0                 1
D335V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  GALNTL5 MUTATED      8    0
  GALNTL5 WILD-TYPE  208    8
     clus
vv    GALNTL5 MUTATED GALNTL5 WILD-TYPE
  NO                0                 8
  YES               8               208

Clustering(336) Variable = SESTD1 MUTATION ANALYSIS
D336V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SESTD1 WILD-TYPE"   "SESTD1 MUTATED" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
  "SESTD1 MUTATED" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE"   "SESTD1 MUTATED" "SESTD1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "SESTD1 MUTATED" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SESTD1 MUTATED" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SESTD1 WILD-TYPE"   "SESTD1 MUTATED" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SESTD1 WILD-TYPE"   "SESTD1 MUTATED" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
  "SESTD1 MUTATED" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE"   "SESTD1 MUTATED" "SESTD1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "SESTD1 MUTATED" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SESTD1 MUTATED" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SESTD1 WILD-TYPE"   "SESTD1 MUTATED" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SESTD1 WILD-TYPE"   "SESTD1 MUTATED" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
  "SESTD1 MUTATED" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE"   "SESTD1 MUTATED" "SESTD1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "SESTD1 MUTATED" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SESTD1 MUTATED" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SESTD1 WILD-TYPE"   "SESTD1 MUTATED" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
[1] "hr=" "1.1"
D336V2, continuous
D336V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SESTD1 MUTATED      6    2
  SESTD1 WILD-TYPE  148   66
        clus
vv       SESTD1 MUTATED SESTD1 WILD-TYPE
  COLON               6              148
  RECTUM              2               66
D336V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SESTD1 MUTATED      3    5
  SESTD1 WILD-TYPE  114  102
        clus
vv       SESTD1 MUTATED SESTD1 WILD-TYPE
  FEMALE              5              102
  MALE                3              114
D336V5, multiclass
                                clus
vv                               SESTD1 MUTATED SESTD1 WILD-TYPE
  COLON ADENOCARCINOMA                        5              123
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D336V6, multiclass
    clus
vv   SESTD1 MUTATED SESTD1 WILD-TYPE
  T1              1                8
  T2              1               46
  T3              5              145
  T4              1               16
D336V7, multiclass
    clus
vv   SESTD1 MUTATED SESTD1 WILD-TYPE
  N0              4              130
  N1              2               42
  N2              2               44
D336V8, multiclass
     clus
vv    SESTD1 MUTATED SESTD1 WILD-TYPE
  M0               8              181
  M1               0               31
  M1A              0                1
D336V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SESTD1 MUTATED      7    1
  SESTD1 WILD-TYPE  209    7
     clus
vv    SESTD1 MUTATED SESTD1 WILD-TYPE
  NO               1                7
  YES              7              209

Clustering(337) Variable = CNGB3 MUTATION ANALYSIS
D337V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "CNGB3 MUTATED" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE"   "CNGB3 MUTATED" "CNGB3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE"   "CNGB3 MUTATED" "CNGB3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE"   "CNGB3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE"   "CNGB3 MUTATED" "CNGB3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNGB3 WILD-TYPE"   "CNGB3 MUTATED" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNGB3 MUTATED" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
  "CNGB3 MUTATED" "CNGB3 WILD-TYPE"   "CNGB3 MUTATED" "CNGB3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CNGB3 MUTATED" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "CNGB3 MUTATED" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE"   "CNGB3 MUTATED" "CNGB3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE"   "CNGB3 MUTATED" "CNGB3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE"   "CNGB3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE"   "CNGB3 MUTATED" "CNGB3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNGB3 WILD-TYPE"   "CNGB3 MUTATED" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNGB3 MUTATED" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
  "CNGB3 MUTATED" "CNGB3 WILD-TYPE"   "CNGB3 MUTATED" "CNGB3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CNGB3 MUTATED" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "CNGB3 MUTATED" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE"   "CNGB3 MUTATED" "CNGB3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE"   "CNGB3 MUTATED" "CNGB3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE"   "CNGB3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE"   "CNGB3 MUTATED" "CNGB3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNGB3 WILD-TYPE"   "CNGB3 MUTATED" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNGB3 MUTATED" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
  "CNGB3 MUTATED" "CNGB3 WILD-TYPE"   "CNGB3 MUTATED" "CNGB3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CNGB3 MUTATED" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" "CNGB3 WILD-TYPE" 
[1] "hr=" "1.1"
D337V2, continuous
D337V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNGB3 MUTATED      9    1
  CNGB3 WILD-TYPE  145   67
        clus
vv       CNGB3 MUTATED CNGB3 WILD-TYPE
  COLON              9             145
  RECTUM             1              67
D337V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNGB3 MUTATED      6    4
  CNGB3 WILD-TYPE  111  103
        clus
vv       CNGB3 MUTATED CNGB3 WILD-TYPE
  FEMALE             4             103
  MALE               6             111
D337V5, multiclass
                                clus
vv                               CNGB3 MUTATED CNGB3 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              5              19
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D337V6, multiclass
    clus
vv   CNGB3 MUTATED CNGB3 WILD-TYPE
  T1             0               9
  T2             2              45
  T3             4             146
  T4             4              13
D337V7, multiclass
    clus
vv   CNGB3 MUTATED CNGB3 WILD-TYPE
  N0             8             126
  N1             1              43
  N2             1              45
D337V8, multiclass
     clus
vv    CNGB3 MUTATED CNGB3 WILD-TYPE
  M0              9             180
  M1              0              31
  M1A             0               1
D337V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNGB3 MUTATED     10    0
  CNGB3 WILD-TYPE  206    8
     clus
vv    CNGB3 MUTATED CNGB3 WILD-TYPE
  NO              0               8
  YES            10             206

Clustering(338) Variable = C2ORF44 MUTATION ANALYSIS
D338V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "C2ORF44 MUTATED" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
  "C2ORF44 MUTATED" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "C2ORF44 MUTATED" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
  "C2ORF44 MUTATED" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "C2ORF44 MUTATED" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
  "C2ORF44 MUTATED" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
[1] "Remove cluster labels:" "C2ORF44 MUTATED"       
clus
  C2ORF44 MUTATED C2ORF44 WILD-TYPE 
                2               118 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H        TCGA-AG-A00Y 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015        TCGA-AG-A016 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
       TCGA-AG-A032        TCGA-AG-A036 
"C2ORF44 WILD-TYPE" "C2ORF44 WILD-TYPE" 
D338V2, continuous
D338V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C2ORF44 MUTATED      1    3
  C2ORF44 WILD-TYPE  153   65
        clus
vv       C2ORF44 MUTATED C2ORF44 WILD-TYPE
  COLON                1               153
  RECTUM               3                65
D338V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C2ORF44 MUTATED      2    2
  C2ORF44 WILD-TYPE  115  105
        clus
vv       C2ORF44 MUTATED C2ORF44 WILD-TYPE
  FEMALE               2               105
  MALE                 2               115
D338V5, multiclass
                                clus
vv                               C2ORF44 MUTATED C2ORF44 WILD-TYPE
  COLON ADENOCARCINOMA                         1               127
  COLON MUCINOUS ADENOCARCINOMA                0                24
  RECTAL ADENOCARCINOMA                        3                54
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D338V6, multiclass
    clus
vv   C2ORF44 MUTATED C2ORF44 WILD-TYPE
  T1               0                 9
  T2               1                46
  T3               3               147
  T4               0                17
D338V7, multiclass
    clus
vv   C2ORF44 MUTATED C2ORF44 WILD-TYPE
  N0               3               131
  N1               1                43
  N2               0                46
D338V8, multiclass
     clus
vv    C2ORF44 MUTATED C2ORF44 WILD-TYPE
  M0                4               185
  M1                0                31
  M1A               0                 1
D338V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C2ORF44 MUTATED      4    0
  C2ORF44 WILD-TYPE  212    8
     clus
vv    C2ORF44 MUTATED C2ORF44 WILD-TYPE
  NO                0                 8
  YES               4               212

Clustering(339) Variable = INPP5D MUTATION ANALYSIS
D339V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE"   "INPP5D MUTATED" "INPP5D WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"INPP5D WILD-TYPE"   "INPP5D MUTATED" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"INPP5D WILD-TYPE"   "INPP5D MUTATED" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "INPP5D MUTATED" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE"   "INPP5D MUTATED" "INPP5D WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"INPP5D WILD-TYPE"   "INPP5D MUTATED" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"INPP5D WILD-TYPE"   "INPP5D MUTATED" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "INPP5D MUTATED" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE"   "INPP5D MUTATED" "INPP5D WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"INPP5D WILD-TYPE"   "INPP5D MUTATED" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"INPP5D WILD-TYPE"   "INPP5D MUTATED" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "INPP5D MUTATED" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" "INPP5D WILD-TYPE" 
[1] "hr=" "2"  
D339V2, continuous
D339V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  INPP5D MUTATED      2    2
  INPP5D WILD-TYPE  152   66
        clus
vv       INPP5D MUTATED INPP5D WILD-TYPE
  COLON               2              152
  RECTUM              2               66
D339V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  INPP5D MUTATED      2    2
  INPP5D WILD-TYPE  115  105
        clus
vv       INPP5D MUTATED INPP5D WILD-TYPE
  FEMALE              2              105
  MALE                2              115
D339V5, multiclass
                                clus
vv                               INPP5D MUTATED INPP5D WILD-TYPE
  COLON ADENOCARCINOMA                        0              128
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D339V6, multiclass
    clus
vv   INPP5D MUTATED INPP5D WILD-TYPE
  T1              0                9
  T2              1               46
  T3              1              149
  T4              2               15
D339V7, multiclass
    clus
vv   INPP5D MUTATED INPP5D WILD-TYPE
  N0              4              130
  N1              0               44
  N2              0               46
D339V8, multiclass
     clus
vv    INPP5D MUTATED INPP5D WILD-TYPE
  M0               4              185
  M1               0               31
  M1A              0                1
D339V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  INPP5D MUTATED      4    0
  INPP5D WILD-TYPE  212    8
     clus
vv    INPP5D MUTATED INPP5D WILD-TYPE
  NO               0                8
  YES              4              212

Clustering(340) Variable = UMOD MUTATION ANALYSIS
D340V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"UMOD WILD-TYPE"   "UMOD MUTATED" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"UMOD WILD-TYPE"   "UMOD MUTATED" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
  "UMOD MUTATED" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "UMOD MUTATED"   "UMOD MUTATED" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"UMOD WILD-TYPE"   "UMOD MUTATED" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"UMOD WILD-TYPE"   "UMOD MUTATED" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
  "UMOD MUTATED" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "UMOD MUTATED"   "UMOD MUTATED" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"UMOD WILD-TYPE"   "UMOD MUTATED" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"UMOD WILD-TYPE"   "UMOD MUTATED" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
  "UMOD MUTATED" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "UMOD MUTATED"   "UMOD MUTATED" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
[1] "hr=" "2.5"
D340V2, continuous
D340V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  UMOD MUTATED      7    0
  UMOD WILD-TYPE  147   68
        clus
vv       UMOD MUTATED UMOD WILD-TYPE
  COLON             7            147
  RECTUM            0             68
D340V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  UMOD MUTATED      4    3
  UMOD WILD-TYPE  113  104
        clus
vv       UMOD MUTATED UMOD WILD-TYPE
  FEMALE            3            104
  MALE              4            113
D340V5, multiclass
                                clus
vv                               UMOD MUTATED UMOD WILD-TYPE
  COLON ADENOCARCINOMA                      5            123
  COLON MUCINOUS ADENOCARCINOMA             2             22
  RECTAL ADENOCARCINOMA                     0             57
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D340V6, multiclass
    clus
vv   UMOD MUTATED UMOD WILD-TYPE
  T1            0              9
  T2            1             46
  T3            4            146
  T4            2             15
D340V7, multiclass
    clus
vv   UMOD MUTATED UMOD WILD-TYPE
  N0            6            128
  N1            1             43
  N2            0             46
D340V8, multiclass
     clus
vv    UMOD MUTATED UMOD WILD-TYPE
  M0             7            182
  M1             0             31
  M1A            0              1
D340V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  UMOD MUTATED      7    0
  UMOD WILD-TYPE  209    8
     clus
vv    UMOD MUTATED UMOD WILD-TYPE
  NO             0              8
  YES            7            209

Clustering(341) Variable = ZNF521 MUTATION ANALYSIS
D341V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE"   "ZNF521 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF521 MUTATED" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF521 WILD-TYPE"   "ZNF521 MUTATED" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF521 MUTATED" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE"   "ZNF521 MUTATED" "ZNF521 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE"   "ZNF521 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF521 MUTATED" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF521 WILD-TYPE"   "ZNF521 MUTATED" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF521 MUTATED" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE"   "ZNF521 MUTATED" "ZNF521 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE"   "ZNF521 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF521 MUTATED" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF521 WILD-TYPE"   "ZNF521 MUTATED" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF521 MUTATED" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE"   "ZNF521 MUTATED" "ZNF521 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
[1] "hr=" "1.8"
D341V2, continuous
D341V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF521 MUTATED      9    4
  ZNF521 WILD-TYPE  145   64
        clus
vv       ZNF521 MUTATED ZNF521 WILD-TYPE
  COLON               9              145
  RECTUM              4               64
D341V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF521 MUTATED      8    5
  ZNF521 WILD-TYPE  109  102
        clus
vv       ZNF521 MUTATED ZNF521 WILD-TYPE
  FEMALE              5              102
  MALE                8              109
D341V5, multiclass
                                clus
vv                               ZNF521 MUTATED ZNF521 WILD-TYPE
  COLON ADENOCARCINOMA                        7              121
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              1                7
D341V6, multiclass
    clus
vv   ZNF521 MUTATED ZNF521 WILD-TYPE
  T1              0                9
  T2              3               44
  T3              8              142
  T4              2               15
D341V7, multiclass
    clus
vv   ZNF521 MUTATED ZNF521 WILD-TYPE
  N0              6              128
  N1              5               39
  N2              2               44
D341V8, multiclass
     clus
vv    ZNF521 MUTATED ZNF521 WILD-TYPE
  M0              12              177
  M1               0               31
  M1A              0                1
D341V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF521 MUTATED     13    0
  ZNF521 WILD-TYPE  203    8
     clus
vv    ZNF521 MUTATED ZNF521 WILD-TYPE
  NO               0                8
  YES             13              203

Clustering(342) Variable = ADCY2 MUTATION ANALYSIS
D342V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "ADCY2 MUTATED" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ADCY2 MUTATED" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ADCY2 MUTATED" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "ADCY2 MUTATED" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ADCY2 MUTATED" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ADCY2 MUTATED" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "ADCY2 MUTATED" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ADCY2 MUTATED" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ADCY2 MUTATED" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
[1] "hr="     "7.6e+07"
D342V2, continuous
D342V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ADCY2 MUTATED     11    3
  ADCY2 WILD-TYPE  143   65
        clus
vv       ADCY2 MUTATED ADCY2 WILD-TYPE
  COLON             11             143
  RECTUM             3              65
D342V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ADCY2 MUTATED      7    7
  ADCY2 WILD-TYPE  110  100
        clus
vv       ADCY2 MUTATED ADCY2 WILD-TYPE
  FEMALE             7             100
  MALE               7             110
D342V5, multiclass
                                clus
vv                               ADCY2 MUTATED ADCY2 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              4              20
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D342V6, multiclass
    clus
vv   ADCY2 MUTATED ADCY2 WILD-TYPE
  T1             0               9
  T2             4              43
  T3             5             145
  T4             5              12
D342V7, multiclass
    clus
vv   ADCY2 MUTATED ADCY2 WILD-TYPE
  N0            10             124
  N1             2              42
  N2             2              44
D342V8, multiclass
     clus
vv    ADCY2 MUTATED ADCY2 WILD-TYPE
  M0             10             179
  M1              3              28
  M1A             0               1
D342V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ADCY2 MUTATED     12    2
  ADCY2 WILD-TYPE  204    6
     clus
vv    ADCY2 MUTATED ADCY2 WILD-TYPE
  NO              2               6
  YES            12             204

Clustering(343) Variable = CYP7B1 MUTATION ANALYSIS
D343V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CYP7B1 WILD-TYPE"   "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
  "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CYP7B1 WILD-TYPE"   "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
  "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CYP7B1 WILD-TYPE"   "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
  "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
[1] "hr=" "1.1"
D343V2, continuous
D343V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CYP7B1 MUTATED      5    2
  CYP7B1 WILD-TYPE  149   66
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  COLON               5              149
  RECTUM              2               66
D343V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CYP7B1 MUTATED      5    2
  CYP7B1 WILD-TYPE  112  105
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  FEMALE              2              105
  MALE                5              112
D343V5, multiclass
                                clus
vv                               CYP7B1 MUTATED CYP7B1 WILD-TYPE
  COLON ADENOCARCINOMA                        3              125
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              1                7
D343V6, multiclass
    clus
vv   CYP7B1 MUTATED CYP7B1 WILD-TYPE
  T1              0                9
  T2              0               47
  T3              4              146
  T4              3               14
D343V7, multiclass
    clus
vv   CYP7B1 MUTATED CYP7B1 WILD-TYPE
  N0              5              129
  N1              1               43
  N2              1               45
D343V8, multiclass
     clus
vv    CYP7B1 MUTATED CYP7B1 WILD-TYPE
  M0               6              183
  M1               1               30
  M1A              0                1
D343V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CYP7B1 MUTATED      7    0
  CYP7B1 WILD-TYPE  209    8
     clus
vv    CYP7B1 MUTATED CYP7B1 WILD-TYPE
  NO               0                8
  YES              7              209

Clustering(344) Variable = CD1E MUTATION ANALYSIS
D344V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CD1E WILD-TYPE"   "CD1E MUTATED" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CD1E WILD-TYPE"   "CD1E MUTATED" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CD1E WILD-TYPE"   "CD1E MUTATED" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
[1] "Remove cluster labels:" "CD1E MUTATED"          
clus
  CD1E MUTATED CD1E WILD-TYPE 
             1            119 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01K     TCGA-AA-A01P     TCGA-AA-A01Q 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T     TCGA-AA-A01V 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024     TCGA-AA-A029 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02O 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F     TCGA-AA-A03J 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689     TCGA-AF-2691 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
D344V2, continuous
D344V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD1E MUTATED      5    1
  CD1E WILD-TYPE  149   67
        clus
vv       CD1E MUTATED CD1E WILD-TYPE
  COLON             5            149
  RECTUM            1             67
D344V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD1E MUTATED      3    3
  CD1E WILD-TYPE  114  104
        clus
vv       CD1E MUTATED CD1E WILD-TYPE
  FEMALE            3            104
  MALE              3            114
D344V5, multiclass
                                clus
vv                               CD1E MUTATED CD1E WILD-TYPE
  COLON ADENOCARCINOMA                      4            124
  COLON MUCINOUS ADENOCARCINOMA             0             24
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D344V6, multiclass
    clus
vv   CD1E MUTATED CD1E WILD-TYPE
  T1            0              9
  T2            2             45
  T3            4            146
  T4            0             17
D344V7, multiclass
    clus
vv   CD1E MUTATED CD1E WILD-TYPE
  N0            4            130
  N1            0             44
  N2            2             44
D344V8, multiclass
     clus
vv    CD1E MUTATED CD1E WILD-TYPE
  M0             4            185
  M1             2             29
  M1A            0              1
D344V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD1E MUTATED      6    0
  CD1E WILD-TYPE  210    8
     clus
vv    CD1E MUTATED CD1E WILD-TYPE
  NO             0              8
  YES            6            210

Clustering(345) Variable = ZNF583 MUTATION ANALYSIS
D345V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "ZNF583 MUTATED" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE"   "ZNF583 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE"   "ZNF583 MUTATED" "ZNF583 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF583 MUTATED" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF583 WILD-TYPE"   "ZNF583 MUTATED" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF583 MUTATED" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE"   "ZNF583 MUTATED" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "ZNF583 MUTATED" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE"   "ZNF583 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE"   "ZNF583 MUTATED" "ZNF583 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF583 MUTATED" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF583 WILD-TYPE"   "ZNF583 MUTATED" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF583 MUTATED" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE"   "ZNF583 MUTATED" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "ZNF583 MUTATED" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE"   "ZNF583 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE"   "ZNF583 MUTATED" "ZNF583 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF583 MUTATED" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF583 WILD-TYPE"   "ZNF583 MUTATED" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF583 MUTATED" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE"   "ZNF583 MUTATED" 
[1] "hr="     "7.4e+07"
D345V2, continuous
D345V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF583 MUTATED      4    3
  ZNF583 WILD-TYPE  150   65
        clus
vv       ZNF583 MUTATED ZNF583 WILD-TYPE
  COLON               4              150
  RECTUM              3               65
D345V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF583 MUTATED      4    3
  ZNF583 WILD-TYPE  113  104
        clus
vv       ZNF583 MUTATED ZNF583 WILD-TYPE
  FEMALE              3              104
  MALE                4              113
D345V5, multiclass
                                clus
vv                               ZNF583 MUTATED ZNF583 WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D345V6, multiclass
    clus
vv   ZNF583 MUTATED ZNF583 WILD-TYPE
  T1              1                8
  T2              2               45
  T3              3              147
  T4              1               16
D345V7, multiclass
    clus
vv   ZNF583 MUTATED ZNF583 WILD-TYPE
  N0              5              129
  N1              0               44
  N2              2               44
D345V8, multiclass
     clus
vv    ZNF583 MUTATED ZNF583 WILD-TYPE
  M0               6              183
  M1               0               31
  M1A              0                1
D345V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF583 MUTATED      7    0
  ZNF583 WILD-TYPE  209    8
     clus
vv    ZNF583 MUTATED ZNF583 WILD-TYPE
  NO               0                8
  YES              7              209

Clustering(346) Variable = FLG2 MUTATION ANALYSIS
D346V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"FLG2 WILD-TYPE"   "FLG2 MUTATED" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"FLG2 WILD-TYPE"   "FLG2 MUTATED" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE"   "FLG2 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE"   "FLG2 MUTATED" "FLG2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
  "FLG2 MUTATED" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE"   "FLG2 MUTATED" "FLG2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"FLG2 WILD-TYPE"   "FLG2 MUTATED" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "FLG2 MUTATED" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"FLG2 WILD-TYPE"   "FLG2 MUTATED" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"FLG2 WILD-TYPE"   "FLG2 MUTATED" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE"   "FLG2 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE"   "FLG2 MUTATED" "FLG2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
  "FLG2 MUTATED" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE"   "FLG2 MUTATED" "FLG2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"FLG2 WILD-TYPE"   "FLG2 MUTATED" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "FLG2 MUTATED" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"FLG2 WILD-TYPE"   "FLG2 MUTATED" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"FLG2 WILD-TYPE"   "FLG2 MUTATED" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE"   "FLG2 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE"   "FLG2 MUTATED" "FLG2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
  "FLG2 MUTATED" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE"   "FLG2 MUTATED" "FLG2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"FLG2 WILD-TYPE"   "FLG2 MUTATED" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "FLG2 MUTATED" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" "FLG2 WILD-TYPE" 
[1] "hr=" "1.9"
D346V2, continuous
D346V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FLG2 MUTATED     11    2
  FLG2 WILD-TYPE  143   66
        clus
vv       FLG2 MUTATED FLG2 WILD-TYPE
  COLON            11            143
  RECTUM            2             66
D346V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FLG2 MUTATED      9    4
  FLG2 WILD-TYPE  108  103
        clus
vv       FLG2 MUTATED FLG2 WILD-TYPE
  FEMALE            4            103
  MALE              9            108
D346V5, multiclass
                                clus
vv                               FLG2 MUTATED FLG2 WILD-TYPE
  COLON ADENOCARCINOMA                      6            122
  COLON MUCINOUS ADENOCARCINOMA             5             19
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D346V6, multiclass
    clus
vv   FLG2 MUTATED FLG2 WILD-TYPE
  T1            1              8
  T2            2             45
  T3            7            143
  T4            3             14
D346V7, multiclass
    clus
vv   FLG2 MUTATED FLG2 WILD-TYPE
  N0            9            125
  N1            2             42
  N2            2             44
D346V8, multiclass
     clus
vv    FLG2 MUTATED FLG2 WILD-TYPE
  M0            11            178
  M1             2             29
  M1A            0              1
D346V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FLG2 MUTATED     13    0
  FLG2 WILD-TYPE  203    8
     clus
vv    FLG2 MUTATED FLG2 WILD-TYPE
  NO             0              8
  YES           13            203

Clustering(347) Variable = RARS2 MUTATION ANALYSIS
D347V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE"   "RARS2 MUTATED" "RARS2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RARS2 WILD-TYPE"   "RARS2 MUTATED" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RARS2 WILD-TYPE"   "RARS2 MUTATED" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "RARS2 MUTATED" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE"   "RARS2 MUTATED" "RARS2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RARS2 WILD-TYPE"   "RARS2 MUTATED" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RARS2 WILD-TYPE"   "RARS2 MUTATED" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "RARS2 MUTATED" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE"   "RARS2 MUTATED" "RARS2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RARS2 WILD-TYPE"   "RARS2 MUTATED" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RARS2 WILD-TYPE"   "RARS2 MUTATED" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "RARS2 MUTATED" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" "RARS2 WILD-TYPE" 
[1] "hr=" "3.5"
D347V2, continuous
D347V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RARS2 MUTATED      3    2
  RARS2 WILD-TYPE  151   66
        clus
vv       RARS2 MUTATED RARS2 WILD-TYPE
  COLON              3             151
  RECTUM             2              66
D347V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RARS2 MUTATED      3    2
  RARS2 WILD-TYPE  114  105
        clus
vv       RARS2 MUTATED RARS2 WILD-TYPE
  FEMALE             2             105
  MALE               3             114
D347V5, multiclass
                                clus
vv                               RARS2 MUTATED RARS2 WILD-TYPE
  COLON ADENOCARCINOMA                       2             126
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D347V6, multiclass
    clus
vv   RARS2 MUTATED RARS2 WILD-TYPE
  T1             1               8
  T2             1              46
  T3             2             148
  T4             1              16
D347V7, multiclass
    clus
vv   RARS2 MUTATED RARS2 WILD-TYPE
  N0             5             129
  N1             0              44
  N2             0              46
D347V8, multiclass
     clus
vv    RARS2 MUTATED RARS2 WILD-TYPE
  M0              5             184
  M1              0              31
  M1A             0               1
D347V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RARS2 MUTATED      5    0
  RARS2 WILD-TYPE  211    8
     clus
vv    RARS2 MUTATED RARS2 WILD-TYPE
  NO              0               8
  YES             5             211

Clustering(348) Variable = C4ORF37 MUTATION ANALYSIS
D348V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE"   "C4ORF37 MUTATED" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "C4ORF37 MUTATED" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE"   "C4ORF37 MUTATED" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"C4ORF37 WILD-TYPE"   "C4ORF37 MUTATED" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "C4ORF37 MUTATED" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE"   "C4ORF37 MUTATED" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "C4ORF37 MUTATED" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE"   "C4ORF37 MUTATED" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"C4ORF37 WILD-TYPE"   "C4ORF37 MUTATED" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "C4ORF37 MUTATED" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE"   "C4ORF37 MUTATED" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "C4ORF37 MUTATED" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE"   "C4ORF37 MUTATED" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"C4ORF37 WILD-TYPE"   "C4ORF37 MUTATED" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "C4ORF37 MUTATED" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
[1] "hr="     "7.3e+07"
D348V2, continuous
D348V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C4ORF37 MUTATED      5    3
  C4ORF37 WILD-TYPE  149   65
        clus
vv       C4ORF37 MUTATED C4ORF37 WILD-TYPE
  COLON                5               149
  RECTUM               3                65
D348V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C4ORF37 MUTATED      5    3
  C4ORF37 WILD-TYPE  112  104
        clus
vv       C4ORF37 MUTATED C4ORF37 WILD-TYPE
  FEMALE               3               104
  MALE                 5               112
D348V5, multiclass
                                clus
vv                               C4ORF37 MUTATED C4ORF37 WILD-TYPE
  COLON ADENOCARCINOMA                         4               124
  COLON MUCINOUS ADENOCARCINOMA                1                23
  RECTAL ADENOCARCINOMA                        3                54
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D348V6, multiclass
    clus
vv   C4ORF37 MUTATED C4ORF37 WILD-TYPE
  T1               1                 8
  T2               2                45
  T3               4               146
  T4               1                16
D348V7, multiclass
    clus
vv   C4ORF37 MUTATED C4ORF37 WILD-TYPE
  N0               7               127
  N1               1                43
  N2               0                46
D348V8, multiclass
     clus
vv    C4ORF37 MUTATED C4ORF37 WILD-TYPE
  M0                8               181
  M1                0                31
  M1A               0                 1
D348V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C4ORF37 MUTATED      8    0
  C4ORF37 WILD-TYPE  208    8
     clus
vv    C4ORF37 MUTATED C4ORF37 WILD-TYPE
  NO                0                 8
  YES               8               208

Clustering(349) Variable = NLRP4 MUTATION ANALYSIS
D349V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE"   "NLRP4 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NLRP4 WILD-TYPE"   "NLRP4 MUTATED" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NLRP4 MUTATED" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NLRP4 WILD-TYPE"   "NLRP4 MUTATED" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NLRP4 WILD-TYPE"   "NLRP4 MUTATED" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NLRP4 MUTATED" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE"   "NLRP4 MUTATED" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE"   "NLRP4 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NLRP4 WILD-TYPE"   "NLRP4 MUTATED" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NLRP4 MUTATED" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NLRP4 WILD-TYPE"   "NLRP4 MUTATED" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NLRP4 WILD-TYPE"   "NLRP4 MUTATED" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NLRP4 MUTATED" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE"   "NLRP4 MUTATED" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE"   "NLRP4 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NLRP4 WILD-TYPE"   "NLRP4 MUTATED" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NLRP4 MUTATED" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NLRP4 WILD-TYPE"   "NLRP4 MUTATED" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NLRP4 WILD-TYPE"   "NLRP4 MUTATED" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NLRP4 MUTATED" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE"   "NLRP4 MUTATED" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
[1] "hr=" "1.1"
D349V2, continuous
D349V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NLRP4 MUTATED      9    5
  NLRP4 WILD-TYPE  145   63
        clus
vv       NLRP4 MUTATED NLRP4 WILD-TYPE
  COLON              9             145
  RECTUM             5              63
D349V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NLRP4 MUTATED      5    9
  NLRP4 WILD-TYPE  112   98
        clus
vv       NLRP4 MUTATED NLRP4 WILD-TYPE
  FEMALE             9              98
  MALE               5             112
D349V5, multiclass
                                clus
vv                               NLRP4 MUTATED NLRP4 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      5              52
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D349V6, multiclass
    clus
vv   NLRP4 MUTATED NLRP4 WILD-TYPE
  T1             1               8
  T2             2              45
  T3             8             142
  T4             3              14
D349V7, multiclass
    clus
vv   NLRP4 MUTATED NLRP4 WILD-TYPE
  N0             9             125
  N1             2              42
  N2             3              43
D349V8, multiclass
     clus
vv    NLRP4 MUTATED NLRP4 WILD-TYPE
  M0             11             178
  M1              2              29
  M1A             0               1
D349V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NLRP4 MUTATED     14    0
  NLRP4 WILD-TYPE  202    8
     clus
vv    NLRP4 MUTATED NLRP4 WILD-TYPE
  NO              0               8
  YES            14             202

Clustering(350) Variable = PEX3 MUTATION ANALYSIS
D350V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE"   "PEX3 MUTATED" "PEX3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "PEX3 MUTATED" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"PEX3 WILD-TYPE"   "PEX3 MUTATED" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "PEX3 MUTATED" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE"   "PEX3 MUTATED" "PEX3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "PEX3 MUTATED" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"PEX3 WILD-TYPE"   "PEX3 MUTATED" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "PEX3 MUTATED" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE"   "PEX3 MUTATED" "PEX3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "PEX3 MUTATED" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"PEX3 WILD-TYPE"   "PEX3 MUTATED" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "PEX3 MUTATED" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
[1] "hr="     "9300000"
D350V2, continuous
D350V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PEX3 MUTATED      4    3
  PEX3 WILD-TYPE  150   65
        clus
vv       PEX3 MUTATED PEX3 WILD-TYPE
  COLON             4            150
  RECTUM            3             65
D350V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PEX3 MUTATED      3    4
  PEX3 WILD-TYPE  114  103
        clus
vv       PEX3 MUTATED PEX3 WILD-TYPE
  FEMALE            4            103
  MALE              3            114
D350V5, multiclass
                                clus
vv                               PEX3 MUTATED PEX3 WILD-TYPE
  COLON ADENOCARCINOMA                      3            125
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     3             54
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D350V6, multiclass
    clus
vv   PEX3 MUTATED PEX3 WILD-TYPE
  T1            1              8
  T2            1             46
  T3            4            146
  T4            1             16
D350V7, multiclass
    clus
vv   PEX3 MUTATED PEX3 WILD-TYPE
  N0            6            128
  N1            1             43
  N2            0             46
D350V8, multiclass
     clus
vv    PEX3 MUTATED PEX3 WILD-TYPE
  M0             7            182
  M1             0             31
  M1A            0              1
D350V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PEX3 MUTATED      7    0
  PEX3 WILD-TYPE  209    8
     clus
vv    PEX3 MUTATED PEX3 WILD-TYPE
  NO             0              8
  YES            7            209

Clustering(351) Variable = C6ORF204 MUTATION ANALYSIS
D351V1, survival
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
  "C6ORF204 MUTATED" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
  "C6ORF204 MUTATED" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE"   "C6ORF204 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "C6ORF204 MUTATED" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C6ORF204 WILD-TYPE"   "C6ORF204 MUTATED" "C6ORF204 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"C6ORF204 WILD-TYPE"   "C6ORF204 MUTATED" "C6ORF204 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE"   "C6ORF204 MUTATED" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
  "C6ORF204 MUTATED" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
  "C6ORF204 MUTATED" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE"   "C6ORF204 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "C6ORF204 MUTATED" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C6ORF204 WILD-TYPE"   "C6ORF204 MUTATED" "C6ORF204 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"C6ORF204 WILD-TYPE"   "C6ORF204 MUTATED" "C6ORF204 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE"   "C6ORF204 MUTATED" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
  "C6ORF204 MUTATED" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
  "C6ORF204 MUTATED" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE"   "C6ORF204 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "C6ORF204 MUTATED" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C6ORF204 WILD-TYPE"   "C6ORF204 MUTATED" "C6ORF204 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"C6ORF204 WILD-TYPE"   "C6ORF204 MUTATED" "C6ORF204 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE"   "C6ORF204 MUTATED" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" "C6ORF204 WILD-TYPE" 
[1] "hr=" "1.7"
D351V2, continuous
D351V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C6ORF204 MUTATED      7    1
  C6ORF204 WILD-TYPE  147   67
        clus
vv       C6ORF204 MUTATED C6ORF204 WILD-TYPE
  COLON                 7                147
  RECTUM                1                 67
D351V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C6ORF204 MUTATED      5    3
  C6ORF204 WILD-TYPE  112  104
        clus
vv       C6ORF204 MUTATED C6ORF204 WILD-TYPE
  FEMALE                3                104
  MALE                  5                112
D351V5, multiclass
                                clus
vv                               C6ORF204 MUTATED C6ORF204 WILD-TYPE
  COLON ADENOCARCINOMA                          4                124
  COLON MUCINOUS ADENOCARCINOMA                 3                 21
  RECTAL ADENOCARCINOMA                         1                 56
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
D351V6, multiclass
    clus
vv   C6ORF204 MUTATED C6ORF204 WILD-TYPE
  T1                0                  9
  T2                1                 46
  T3                4                146
  T4                3                 14
D351V7, multiclass
    clus
vv   C6ORF204 MUTATED C6ORF204 WILD-TYPE
  N0                7                127
  N1                0                 44
  N2                1                 45
D351V8, multiclass
     clus
vv    C6ORF204 MUTATED C6ORF204 WILD-TYPE
  M0                 6                183
  M1                 1                 30
  M1A                0                  1
D351V9, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C6ORF204 MUTATED      7    1
  C6ORF204 WILD-TYPE  209    7
     clus
vv    C6ORF204 MUTATED C6ORF204 WILD-TYPE
  NO                 1                  7
  YES                7                209

Clustering(352) Variable = OR8J1 MUTATION ANALYSIS
D352V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "OR8J1 MUTATED" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE"   "OR8J1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR8J1 MUTATED"   "OR8J1 MUTATED" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OR8J1 MUTATED" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "OR8J1 MUTATED" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE"   "OR8J1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR8J1 MUTATED"   "OR8J1 MUTATED" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OR8J1 MUTATED" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "OR8J1 MUTATED" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE"   "OR8J1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR8J1 MUTATED"   "OR8J1 MUTATED" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OR8J1 MUTATED" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
[1] "hr=" "2.1"
D352V2, continuous
D352V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8J1 MUTATED      4    1
  OR8J1 WILD-TYPE  150   67
        clus
vv       OR8J1 MUTATED OR8J1 WILD-TYPE
  COLON              4             150
  RECTUM             1              67
D352V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8J1 MUTATED      2    3
  OR8J1 WILD-TYPE  115  104
        clus
vv       OR8J1 MUTATED OR8J1 WILD-TYPE
  FEMALE             3             104
  MALE               2             115
D352V5, multiclass
                                clus
vv                               OR8J1 MUTATED OR8J1 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              0              24
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D352V6, multiclass
    clus
vv   OR8J1 MUTATED OR8J1 WILD-TYPE
  T1             0               9
  T2             2              45
  T3             2             148
  T4             1              16
D352V7, multiclass
    clus
vv   OR8J1 MUTATED OR8J1 WILD-TYPE
  N0             5             129
  N1             0              44
  N2             0              46
D352V8, multiclass
     clus
vv    OR8J1 MUTATED OR8J1 WILD-TYPE
  M0              4             185
  M1              0              31
  M1A             0               1
D352V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8J1 MUTATED      5    0
  OR8J1 WILD-TYPE  211    8
     clus
vv    OR8J1 MUTATED OR8J1 WILD-TYPE
  NO              0               8
  YES             5             211

Clustering(353) Variable = ARHGAP5 MUTATION ANALYSIS
D353V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "ARHGAP5 MUTATED" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE"   "ARHGAP5 MUTATED" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ARHGAP5 WILD-TYPE"   "ARHGAP5 MUTATED" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
  "ARHGAP5 MUTATED"   "ARHGAP5 MUTATED" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "ARHGAP5 MUTATED" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "ARHGAP5 MUTATED" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE"   "ARHGAP5 MUTATED" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ARHGAP5 WILD-TYPE"   "ARHGAP5 MUTATED" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
  "ARHGAP5 MUTATED"   "ARHGAP5 MUTATED" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "ARHGAP5 MUTATED" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "ARHGAP5 MUTATED" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE"   "ARHGAP5 MUTATED" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ARHGAP5 WILD-TYPE"   "ARHGAP5 MUTATED" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
  "ARHGAP5 MUTATED"   "ARHGAP5 MUTATED" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "ARHGAP5 MUTATED" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" "ARHGAP5 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D353V2, continuous
D353V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ARHGAP5 MUTATED      6    3
  ARHGAP5 WILD-TYPE  148   65
        clus
vv       ARHGAP5 MUTATED ARHGAP5 WILD-TYPE
  COLON                6               148
  RECTUM               3                65
D353V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ARHGAP5 MUTATED      4    5
  ARHGAP5 WILD-TYPE  113  102
        clus
vv       ARHGAP5 MUTATED ARHGAP5 WILD-TYPE
  FEMALE               5               102
  MALE                 4               113
D353V5, multiclass
                                clus
vv                               ARHGAP5 MUTATED ARHGAP5 WILD-TYPE
  COLON ADENOCARCINOMA                         1               127
  COLON MUCINOUS ADENOCARCINOMA                4                20
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               1                 7
D353V6, multiclass
    clus
vv   ARHGAP5 MUTATED ARHGAP5 WILD-TYPE
  T1               1                 8
  T2               2                45
  T3               4               146
  T4               2                15
D353V7, multiclass
    clus
vv   ARHGAP5 MUTATED ARHGAP5 WILD-TYPE
  N0               7               127
  N1               1                43
  N2               1                45
D353V8, multiclass
     clus
vv    ARHGAP5 MUTATED ARHGAP5 WILD-TYPE
  M0                8               181
  M1                1                30
  M1A               0                 1
D353V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ARHGAP5 MUTATED      9    0
  ARHGAP5 WILD-TYPE  207    8
     clus
vv    ARHGAP5 MUTATED ARHGAP5 WILD-TYPE
  NO                0                 8
  YES               9               207

Clustering(354) Variable = SLCO1B3 MUTATION ANALYSIS
D354V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED"   "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED"   "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED"   "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
[1] "hr=" "2.1"
D354V2, continuous
D354V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLCO1B3 MUTATED      7    1
  SLCO1B3 WILD-TYPE  147   67
        clus
vv       SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  COLON                7               147
  RECTUM               1                67
D354V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLCO1B3 MUTATED      3    5
  SLCO1B3 WILD-TYPE  114  102
        clus
vv       SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  FEMALE               5               102
  MALE                 3               114
D354V5, multiclass
                                clus
vv                               SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  COLON ADENOCARCINOMA                         5               123
  COLON MUCINOUS ADENOCARCINOMA                2                22
  RECTAL ADENOCARCINOMA                        1                56
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D354V6, multiclass
    clus
vv   SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  T1               0                 9
  T2               2                45
  T3               4               146
  T4               2                15
D354V7, multiclass
    clus
vv   SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  N0               6               128
  N1               1                43
  N2               1                45
D354V8, multiclass
     clus
vv    SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  M0                8               181
  M1                0                31
  M1A               0                 1
D354V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLCO1B3 MUTATED      8    0
  SLCO1B3 WILD-TYPE  208    8
     clus
vv    SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  NO                0                 8
  YES               8               208

Clustering(355) Variable = SPATA8 MUTATION ANALYSIS
D355V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SPATA8 WILD-TYPE"   "SPATA8 MUTATED" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE"   "SPATA8 MUTATED" "SPATA8 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SPATA8 WILD-TYPE"   "SPATA8 MUTATED" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE"   "SPATA8 MUTATED" "SPATA8 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SPATA8 WILD-TYPE"   "SPATA8 MUTATED" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE"   "SPATA8 MUTATED" "SPATA8 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
[1] "Remove cluster labels:" "SPATA8 MUTATED"        
clus
  SPATA8 MUTATED SPATA8 WILD-TYPE 
               2              118 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A025 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N       TCGA-AG-A02X 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A032       TCGA-AG-A036 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
D355V2, continuous
D355V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPATA8 MUTATED      0    3
  SPATA8 WILD-TYPE  154   65
        clus
vv       SPATA8 MUTATED SPATA8 WILD-TYPE
  COLON               0              154
  RECTUM              3               65
D355V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPATA8 MUTATED      0    3
  SPATA8 WILD-TYPE  117  104
        clus
vv       SPATA8 MUTATED SPATA8 WILD-TYPE
  FEMALE              3              104
  MALE                0              117
D355V5, multiclass
                                clus
vv                               SPATA8 MUTATED SPATA8 WILD-TYPE
  COLON ADENOCARCINOMA                        0              128
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D355V6, multiclass
    clus
vv   SPATA8 MUTATED SPATA8 WILD-TYPE
  T1              0                9
  T2              0               47
  T3              3              147
  T4              0               17
D355V7, multiclass
    clus
vv   SPATA8 MUTATED SPATA8 WILD-TYPE
  N0              2              132
  N1              1               43
  N2              0               46
D355V8, multiclass
     clus
vv    SPATA8 MUTATED SPATA8 WILD-TYPE
  M0               3              186
  M1               0               31
  M1A              0                1
D355V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPATA8 MUTATED      3    0
  SPATA8 WILD-TYPE  213    8
     clus
vv    SPATA8 MUTATED SPATA8 WILD-TYPE
  NO               0                8
  YES              3              213

Clustering(356) Variable = SPRED1 MUTATION ANALYSIS
D356V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE"   "SPRED1 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SPRED1 MUTATED" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SPRED1 MUTATED" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE"   "SPRED1 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SPRED1 MUTATED" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SPRED1 MUTATED" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE"   "SPRED1 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SPRED1 MUTATED" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SPRED1 MUTATED" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" "SPRED1 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D356V2, continuous
D356V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPRED1 MUTATED      5    1
  SPRED1 WILD-TYPE  149   67
        clus
vv       SPRED1 MUTATED SPRED1 WILD-TYPE
  COLON               5              149
  RECTUM              1               67
D356V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPRED1 MUTATED      2    4
  SPRED1 WILD-TYPE  115  103
        clus
vv       SPRED1 MUTATED SPRED1 WILD-TYPE
  FEMALE              4              103
  MALE                2              115
D356V5, multiclass
                                clus
vv                               SPRED1 MUTATED SPRED1 WILD-TYPE
  COLON ADENOCARCINOMA                        5              123
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D356V6, multiclass
    clus
vv   SPRED1 MUTATED SPRED1 WILD-TYPE
  T1              0                9
  T2              1               46
  T3              3              147
  T4              2               15
D356V7, multiclass
    clus
vv   SPRED1 MUTATED SPRED1 WILD-TYPE
  N0              4              130
  N1              1               43
  N2              1               45
D356V8, multiclass
     clus
vv    SPRED1 MUTATED SPRED1 WILD-TYPE
  M0               6              183
  M1               0               31
  M1A              0                1
D356V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPRED1 MUTATED      6    0
  SPRED1 WILD-TYPE  210    8
     clus
vv    SPRED1 MUTATED SPRED1 WILD-TYPE
  NO               0                8
  YES              6              210

Clustering(357) Variable = ZNF329 MUTATION ANALYSIS
D357V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE"   "ZNF329 MUTATED" "ZNF329 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF329 MUTATED" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
  "ZNF329 MUTATED" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
  "ZNF329 MUTATED" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF329 MUTATED" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE"   "ZNF329 MUTATED" "ZNF329 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF329 MUTATED" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
  "ZNF329 MUTATED" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
  "ZNF329 MUTATED" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF329 MUTATED" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE"   "ZNF329 MUTATED" "ZNF329 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF329 MUTATED" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
  "ZNF329 MUTATED" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
  "ZNF329 MUTATED" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF329 MUTATED" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" "ZNF329 WILD-TYPE" 
[1] "hr="   "8e+07"
D357V2, continuous
D357V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF329 MUTATED      6    1
  ZNF329 WILD-TYPE  148   67
        clus
vv       ZNF329 MUTATED ZNF329 WILD-TYPE
  COLON               6              148
  RECTUM              1               67
D357V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF329 MUTATED      5    2
  ZNF329 WILD-TYPE  112  105
        clus
vv       ZNF329 MUTATED ZNF329 WILD-TYPE
  FEMALE              2              105
  MALE                5              112
D357V5, multiclass
                                clus
vv                               ZNF329 MUTATED ZNF329 WILD-TYPE
  COLON ADENOCARCINOMA                        5              123
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D357V6, multiclass
    clus
vv   ZNF329 MUTATED ZNF329 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              2              148
  T4              3               14
D357V7, multiclass
    clus
vv   ZNF329 MUTATED ZNF329 WILD-TYPE
  N0              5              129
  N1              1               43
  N2              1               45
D357V8, multiclass
     clus
vv    ZNF329 MUTATED ZNF329 WILD-TYPE
  M0               6              183
  M1               1               30
  M1A              0                1
D357V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF329 MUTATED      7    0
  ZNF329 WILD-TYPE  209    8
     clus
vv    ZNF329 MUTATED ZNF329 WILD-TYPE
  NO               0                8
  YES              7              209

Clustering(358) Variable = ADAMTS12 MUTATION ANALYSIS
D358V1, survival
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED"   "ADAMTS12 MUTATED" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED"   "ADAMTS12 MUTATED" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED"   "ADAMTS12 MUTATED" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
[1] "hr=" "1"  
D358V2, continuous
D358V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ADAMTS12 MUTATED     14    4
  ADAMTS12 WILD-TYPE  140   64
        clus
vv       ADAMTS12 MUTATED ADAMTS12 WILD-TYPE
  COLON                14                140
  RECTUM                4                 64
D358V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ADAMTS12 MUTATED      6   12
  ADAMTS12 WILD-TYPE  111   95
        clus
vv       ADAMTS12 MUTATED ADAMTS12 WILD-TYPE
  FEMALE               12                 95
  MALE                  6                111
D358V5, multiclass
                                clus
vv                               ADAMTS12 MUTATED ADAMTS12 WILD-TYPE
  COLON ADENOCARCINOMA                         10                118
  COLON MUCINOUS ADENOCARCINOMA                 4                 20
  RECTAL ADENOCARCINOMA                         4                 53
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
D358V6, multiclass
    clus
vv   ADAMTS12 MUTATED ADAMTS12 WILD-TYPE
  T1                2                  7
  T2                4                 43
  T3                9                141
  T4                3                 14
D358V7, multiclass
    clus
vv   ADAMTS12 MUTATED ADAMTS12 WILD-TYPE
  N0               12                122
  N1                4                 40
  N2                2                 44
D358V8, multiclass
     clus
vv    ADAMTS12 MUTATED ADAMTS12 WILD-TYPE
  M0                17                172
  M1                 1                 30
  M1A                0                  1
D358V9, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ADAMTS12 MUTATED     18    0
  ADAMTS12 WILD-TYPE  198    8
     clus
vv    ADAMTS12 MUTATED ADAMTS12 WILD-TYPE
  NO                 0                  8
  YES               18                198

Clustering(359) Variable = CLECL1 MUTATION ANALYSIS
D359V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE"   "CLECL1 MUTATED" "CLECL1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CLECL1 WILD-TYPE"   "CLECL1 MUTATED" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE"   "CLECL1 MUTATED" "CLECL1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CLECL1 WILD-TYPE"   "CLECL1 MUTATED" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE"   "CLECL1 MUTATED" "CLECL1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CLECL1 WILD-TYPE"   "CLECL1 MUTATED" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
[1] "Remove cluster labels:" "CLECL1 MUTATED"        
clus
  CLECL1 MUTATED CLECL1 WILD-TYPE 
               2              118 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3811       TCGA-AA-3818 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3846 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877       TCGA-AA-3939 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3952 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977       TCGA-AA-3986 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A01P       TCGA-AA-A01Q       TCGA-AA-A01R 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A01S       TCGA-AA-A01T       TCGA-AA-A01V       TCGA-AA-A01X 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A01Z       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02O       TCGA-AA-A02W 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A02Y       TCGA-AA-A03F       TCGA-AA-A03J       TCGA-AY-4070 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AY-4071       TCGA-AF-2689       TCGA-AF-2691       TCGA-AF-2692 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581       TCGA-AG-3582 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599       TCGA-AG-3726 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887       TCGA-AG-3892 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999       TCGA-AG-4001 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002       TCGA-AG-A008 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A025 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N       TCGA-AG-A02X 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A032       TCGA-AG-A036 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
D359V2, continuous
D359V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CLECL1 MUTATED      3    1
  CLECL1 WILD-TYPE  151   67
        clus
vv       CLECL1 MUTATED CLECL1 WILD-TYPE
  COLON               3              151
  RECTUM              1               67
D359V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CLECL1 MUTATED      2    2
  CLECL1 WILD-TYPE  115  105
        clus
vv       CLECL1 MUTATED CLECL1 WILD-TYPE
  FEMALE              2              105
  MALE                2              115
D359V5, multiclass
                                clus
vv                               CLECL1 MUTATED CLECL1 WILD-TYPE
  COLON ADENOCARCINOMA                        2              126
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D359V6, multiclass
    clus
vv   CLECL1 MUTATED CLECL1 WILD-TYPE
  T1              0                9
  T2              1               46
  T3              2              148
  T4              1               16
D359V7, multiclass
    clus
vv   CLECL1 MUTATED CLECL1 WILD-TYPE
  N0              3              131
  N1              1               43
  N2              0               46
D359V8, multiclass
     clus
vv    CLECL1 MUTATED CLECL1 WILD-TYPE
  M0               4              185
  M1               0               31
  M1A              0                1
D359V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CLECL1 MUTATED      4    0
  CLECL1 WILD-TYPE  212    8
     clus
vv    CLECL1 MUTATED CLECL1 WILD-TYPE
  NO               0                8
  YES              4              212

Clustering(360) Variable = COL22A1 MUTATION ANALYSIS
D360V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "COL22A1 MUTATED" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" "COL22A1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "COL22A1 MUTATED" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"COL22A1 WILD-TYPE"   "COL22A1 MUTATED" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "COL22A1 MUTATED" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "COL22A1 MUTATED" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" "COL22A1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "COL22A1 MUTATED" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"COL22A1 WILD-TYPE"   "COL22A1 MUTATED" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "COL22A1 MUTATED" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "COL22A1 MUTATED" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" "COL22A1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "COL22A1 MUTATED" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"COL22A1 WILD-TYPE"   "COL22A1 MUTATED" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "COL22A1 MUTATED" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
[1] "hr="     "7.4e+07"
D360V2, continuous
D360V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL22A1 MUTATED     14    2
  COL22A1 WILD-TYPE  140   66
        clus
vv       COL22A1 MUTATED COL22A1 WILD-TYPE
  COLON               14               140
  RECTUM               2                66
D360V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL22A1 MUTATED      8    8
  COL22A1 WILD-TYPE  109   99
        clus
vv       COL22A1 MUTATED COL22A1 WILD-TYPE
  FEMALE               8                99
  MALE                 8               109
D360V5, multiclass
                                clus
vv                               COL22A1 MUTATED COL22A1 WILD-TYPE
  COLON ADENOCARCINOMA                        11               117
  COLON MUCINOUS ADENOCARCINOMA                2                22
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D360V6, multiclass
    clus
vv   COL22A1 MUTATED COL22A1 WILD-TYPE
  T1               0                 9
  T2               4                43
  T3              10               140
  T4               2                15
D360V7, multiclass
    clus
vv   COL22A1 MUTATED COL22A1 WILD-TYPE
  N0              11               123
  N1               1                43
  N2               4                42
D360V8, multiclass
     clus
vv    COL22A1 MUTATED COL22A1 WILD-TYPE
  M0               13               176
  M1                2                29
  M1A               0                 1
D360V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL22A1 MUTATED     16    0
  COL22A1 WILD-TYPE  200    8
     clus
vv    COL22A1 MUTATED COL22A1 WILD-TYPE
  NO                0                 8
  YES              16               200

Clustering(361) Variable = CWF19L2 MUTATION ANALYSIS
D361V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE"   "CWF19L2 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE"   "CWF19L2 MUTATED" "CWF19L2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "CWF19L2 MUTATED" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"CWF19L2 WILD-TYPE"   "CWF19L2 MUTATED" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "CWF19L2 MUTATED" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE"   "CWF19L2 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE"   "CWF19L2 MUTATED" "CWF19L2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "CWF19L2 MUTATED" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"CWF19L2 WILD-TYPE"   "CWF19L2 MUTATED" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "CWF19L2 MUTATED" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE"   "CWF19L2 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE"   "CWF19L2 MUTATED" "CWF19L2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "CWF19L2 MUTATED" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"CWF19L2 WILD-TYPE"   "CWF19L2 MUTATED" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "CWF19L2 MUTATED" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D361V2, continuous
D361V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CWF19L2 MUTATED      5    3
  CWF19L2 WILD-TYPE  149   65
        clus
vv       CWF19L2 MUTATED CWF19L2 WILD-TYPE
  COLON                5               149
  RECTUM               3                65
D361V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CWF19L2 MUTATED      5    3
  CWF19L2 WILD-TYPE  112  104
        clus
vv       CWF19L2 MUTATED CWF19L2 WILD-TYPE
  FEMALE               3               104
  MALE                 5               112
D361V5, multiclass
                                clus
vv                               CWF19L2 MUTATED CWF19L2 WILD-TYPE
  COLON ADENOCARCINOMA                         3               125
  COLON MUCINOUS ADENOCARCINOMA                2                22
  RECTAL ADENOCARCINOMA                        3                54
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D361V6, multiclass
    clus
vv   CWF19L2 MUTATED CWF19L2 WILD-TYPE
  T1               1                 8
  T2               4                43
  T3               1               149
  T4               2                15
D361V7, multiclass
    clus
vv   CWF19L2 MUTATED CWF19L2 WILD-TYPE
  N0               7               127
  N1               1                43
  N2               0                46
D361V8, multiclass
     clus
vv    CWF19L2 MUTATED CWF19L2 WILD-TYPE
  M0                7               182
  M1                0                31
  M1A               0                 1
D361V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CWF19L2 MUTATED      8    0
  CWF19L2 WILD-TYPE  208    8
     clus
vv    CWF19L2 MUTATED CWF19L2 WILD-TYPE
  NO                0                 8
  YES               8               208

Clustering(362) Variable = GPR158 MUTATION ANALYSIS
D362V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GPR158 WILD-TYPE"   "GPR158 MUTATED"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "GPR158 MUTATED" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GPR158 WILD-TYPE"   "GPR158 MUTATED"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "GPR158 MUTATED" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GPR158 WILD-TYPE"   "GPR158 MUTATED"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "GPR158 MUTATED" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
[1] "hr=" "1.3"
D362V2, continuous
D362V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR158 MUTATED      6    4
  GPR158 WILD-TYPE  148   64
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  COLON               6              148
  RECTUM              4               64
D362V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR158 MUTATED      6    4
  GPR158 WILD-TYPE  111  103
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  FEMALE              4              103
  MALE                6              111
D362V5, multiclass
                                clus
vv                               GPR158 MUTATED GPR158 WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       4               53
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D362V6, multiclass
    clus
vv   GPR158 MUTATED GPR158 WILD-TYPE
  T1              1                8
  T2              2               45
  T3              5              145
  T4              2               15
D362V7, multiclass
    clus
vv   GPR158 MUTATED GPR158 WILD-TYPE
  N0              6              128
  N1              2               42
  N2              2               44
D362V8, multiclass
     clus
vv    GPR158 MUTATED GPR158 WILD-TYPE
  M0               8              181
  M1               1               30
  M1A              0                1
D362V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR158 MUTATED     10    0
  GPR158 WILD-TYPE  206    8
     clus
vv    GPR158 MUTATED GPR158 WILD-TYPE
  NO               0                8
  YES             10              206

Clustering(363) Variable = MAP1B MUTATION ANALYSIS
D363V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE"   "MAP1B MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE"   "MAP1B MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MAP1B WILD-TYPE"   "MAP1B MUTATED" "MAP1B WILD-TYPE"   "MAP1B MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
  "MAP1B MUTATED" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE"   "MAP1B MUTATED" "MAP1B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MAP1B WILD-TYPE"   "MAP1B MUTATED" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MAP1B WILD-TYPE"   "MAP1B MUTATED" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "MAP1B MUTATED" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
  "MAP1B MUTATED" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MAP1B WILD-TYPE"   "MAP1B MUTATED" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MAP1B MUTATED" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE"   "MAP1B MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE"   "MAP1B MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MAP1B WILD-TYPE"   "MAP1B MUTATED" "MAP1B WILD-TYPE"   "MAP1B MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
  "MAP1B MUTATED" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE"   "MAP1B MUTATED" "MAP1B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MAP1B WILD-TYPE"   "MAP1B MUTATED" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MAP1B WILD-TYPE"   "MAP1B MUTATED" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "MAP1B MUTATED" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
  "MAP1B MUTATED" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MAP1B WILD-TYPE"   "MAP1B MUTATED" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MAP1B MUTATED" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE"   "MAP1B MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE"   "MAP1B MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MAP1B WILD-TYPE"   "MAP1B MUTATED" "MAP1B WILD-TYPE"   "MAP1B MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
  "MAP1B MUTATED" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE"   "MAP1B MUTATED" "MAP1B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MAP1B WILD-TYPE"   "MAP1B MUTATED" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MAP1B WILD-TYPE"   "MAP1B MUTATED" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "MAP1B MUTATED" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
  "MAP1B MUTATED" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MAP1B WILD-TYPE"   "MAP1B MUTATED" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MAP1B MUTATED" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" "MAP1B WILD-TYPE" 
[1] "hr=" "1.1"
D363V2, continuous
D363V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MAP1B MUTATED     14    4
  MAP1B WILD-TYPE  140   64
        clus
vv       MAP1B MUTATED MAP1B WILD-TYPE
  COLON             14             140
  RECTUM             4              64
D363V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MAP1B MUTATED     10    8
  MAP1B WILD-TYPE  107   99
        clus
vv       MAP1B MUTATED MAP1B WILD-TYPE
  FEMALE             8              99
  MALE              10             107
D363V5, multiclass
                                clus
vv                               MAP1B MUTATED MAP1B WILD-TYPE
  COLON ADENOCARCINOMA                       9             119
  COLON MUCINOUS ADENOCARCINOMA              5              19
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D363V6, multiclass
    clus
vv   MAP1B MUTATED MAP1B WILD-TYPE
  T1             1               8
  T2             4              43
  T3            10             140
  T4             3              14
D363V7, multiclass
    clus
vv   MAP1B MUTATED MAP1B WILD-TYPE
  N0            11             123
  N1             3              41
  N2             4              42
D363V8, multiclass
     clus
vv    MAP1B MUTATED MAP1B WILD-TYPE
  M0             16             173
  M1              1              30
  M1A             0               1
D363V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MAP1B MUTATED     17    1
  MAP1B WILD-TYPE  199    7
     clus
vv    MAP1B MUTATED MAP1B WILD-TYPE
  NO              1               7
  YES            17             199

Clustering(364) Variable = OR2T6 MUTATION ANALYSIS
D364V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE"   "OR2T6 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "OR2T6 MUTATED" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OR2T6 MUTATED" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE"   "OR2T6 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "OR2T6 MUTATED" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OR2T6 MUTATED" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE"   "OR2T6 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "OR2T6 MUTATED" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OR2T6 MUTATED" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D364V2, continuous
D364V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T6 MUTATED      4    1
  OR2T6 WILD-TYPE  150   67
        clus
vv       OR2T6 MUTATED OR2T6 WILD-TYPE
  COLON              4             150
  RECTUM             1              67
D364V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T6 MUTATED      4    1
  OR2T6 WILD-TYPE  113  106
        clus
vv       OR2T6 MUTATED OR2T6 WILD-TYPE
  FEMALE             1             106
  MALE               4             113
D364V5, multiclass
                                clus
vv                               OR2T6 MUTATED OR2T6 WILD-TYPE
  COLON ADENOCARCINOMA                       3             125
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D364V6, multiclass
    clus
vv   OR2T6 MUTATED OR2T6 WILD-TYPE
  T1             1               8
  T2             1              46
  T3             3             147
  T4             0              17
D364V7, multiclass
    clus
vv   OR2T6 MUTATED OR2T6 WILD-TYPE
  N0             3             131
  N1             2              42
  N2             0              46
D364V8, multiclass
     clus
vv    OR2T6 MUTATED OR2T6 WILD-TYPE
  M0              4             185
  M1              1              30
  M1A             0               1
D364V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T6 MUTATED      5    0
  OR2T6 WILD-TYPE  211    8
     clus
vv    OR2T6 MUTATED OR2T6 WILD-TYPE
  NO              0               8
  YES             5             211

Clustering(365) Variable = RPE65 MUTATION ANALYSIS
D365V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE"   "RPE65 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RPE65 MUTATED" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "RPE65 MUTATED" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RPE65 WILD-TYPE"   "RPE65 MUTATED" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
  "RPE65 MUTATED" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "RPE65 MUTATED" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE"   "RPE65 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RPE65 MUTATED" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "RPE65 MUTATED" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RPE65 WILD-TYPE"   "RPE65 MUTATED" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
  "RPE65 MUTATED" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "RPE65 MUTATED" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE"   "RPE65 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RPE65 MUTATED" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "RPE65 MUTATED" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RPE65 WILD-TYPE"   "RPE65 MUTATED" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
  "RPE65 MUTATED" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "RPE65 MUTATED" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D365V2, continuous
D365V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RPE65 MUTATED      5    2
  RPE65 WILD-TYPE  149   66
        clus
vv       RPE65 MUTATED RPE65 WILD-TYPE
  COLON              5             149
  RECTUM             2              66
D365V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RPE65 MUTATED      4    4
  RPE65 WILD-TYPE  113  103
        clus
vv       RPE65 MUTATED RPE65 WILD-TYPE
  FEMALE             4             103
  MALE               4             113
D365V5, multiclass
                                clus
vv                               RPE65 MUTATED RPE65 WILD-TYPE
  COLON ADENOCARCINOMA                       5             123
  COLON MUCINOUS ADENOCARCINOMA              0              24
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D365V6, multiclass
    clus
vv   RPE65 MUTATED RPE65 WILD-TYPE
  T1             0               9
  T2             3              44
  T3             3             147
  T4             2              15
D365V7, multiclass
    clus
vv   RPE65 MUTATED RPE65 WILD-TYPE
  N0             8             126
  N1             0              44
  N2             0              46
D365V8, multiclass
     clus
vv    RPE65 MUTATED RPE65 WILD-TYPE
  M0              7             182
  M1              0              31
  M1A             0               1
D365V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RPE65 MUTATED      8    0
  RPE65 WILD-TYPE  208    8
     clus
vv    RPE65 MUTATED RPE65 WILD-TYPE
  NO              0               8
  YES             8             208

Clustering(366) Variable = SGCG MUTATION ANALYSIS
D366V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SGCG WILD-TYPE"   "SGCG MUTATED" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SGCG WILD-TYPE"   "SGCG MUTATED" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE"   "SGCG MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "SGCG MUTATED" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SGCG WILD-TYPE"   "SGCG MUTATED" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SGCG WILD-TYPE"   "SGCG MUTATED" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE"   "SGCG MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "SGCG MUTATED" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SGCG WILD-TYPE"   "SGCG MUTATED" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SGCG WILD-TYPE"   "SGCG MUTATED" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE"   "SGCG MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "SGCG MUTATED" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
[1] "hr=" "2.7"
D366V2, continuous
D366V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SGCG MUTATED      5    2
  SGCG WILD-TYPE  149   66
        clus
vv       SGCG MUTATED SGCG WILD-TYPE
  COLON             5            149
  RECTUM            2             66
D366V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SGCG MUTATED      3    4
  SGCG WILD-TYPE  114  103
        clus
vv       SGCG MUTATED SGCG WILD-TYPE
  FEMALE            4            103
  MALE              3            114
D366V5, multiclass
                                clus
vv                               SGCG MUTATED SGCG WILD-TYPE
  COLON ADENOCARCINOMA                      2            126
  COLON MUCINOUS ADENOCARCINOMA             3             21
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D366V6, multiclass
    clus
vv   SGCG MUTATED SGCG WILD-TYPE
  T1            0              9
  T2            2             45
  T3            4            146
  T4            1             16
D366V7, multiclass
    clus
vv   SGCG MUTATED SGCG WILD-TYPE
  N0            4            130
  N1            0             44
  N2            3             43
D366V8, multiclass
     clus
vv    SGCG MUTATED SGCG WILD-TYPE
  M0             5            184
  M1             2             29
  M1A            0              1
D366V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SGCG MUTATED      7    0
  SGCG WILD-TYPE  209    8
     clus
vv    SGCG MUTATED SGCG WILD-TYPE
  NO             0              8
  YES            7            209

Clustering(367) Variable = NDUFAF4 MUTATION ANALYSIS
D367V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"NDUFAF4 WILD-TYPE"   "NDUFAF4 MUTATED" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
  "NDUFAF4 MUTATED" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"NDUFAF4 WILD-TYPE"   "NDUFAF4 MUTATED" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
  "NDUFAF4 MUTATED" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"NDUFAF4 WILD-TYPE"   "NDUFAF4 MUTATED" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
  "NDUFAF4 MUTATED" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
[1] "Remove cluster labels:" "NDUFAF4 MUTATED"       
clus
  NDUFAF4 MUTATED NDUFAF4 WILD-TYPE 
                2               118 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00O        TCGA-AA-A00Q        TCGA-AA-A00R 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A010 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F        TCGA-AA-A01G 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P        TCGA-AA-A01Q 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T        TCGA-AA-A01V 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024        TCGA-AA-A029 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02O 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F        TCGA-AA-A03J 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689        TCGA-AF-2691 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3581 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587        TCGA-AG-3726 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3887        TCGA-AG-3892 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3999        TCGA-AG-4001 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-A002        TCGA-AG-A008 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A00C        TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A014        TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020        TCGA-AG-A025 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02N        TCGA-AG-A02X 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A032        TCGA-AG-A036 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
D367V2, continuous
D367V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  NDUFAF4 MUTATED      4    1
  NDUFAF4 WILD-TYPE  150   67
        clus
vv       NDUFAF4 MUTATED NDUFAF4 WILD-TYPE
  COLON                4               150
  RECTUM               1                67
D367V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  NDUFAF4 MUTATED      3    2
  NDUFAF4 WILD-TYPE  114  105
        clus
vv       NDUFAF4 MUTATED NDUFAF4 WILD-TYPE
  FEMALE               2               105
  MALE                 3               114
D367V5, multiclass
                                clus
vv                               NDUFAF4 MUTATED NDUFAF4 WILD-TYPE
  COLON ADENOCARCINOMA                         3               125
  COLON MUCINOUS ADENOCARCINOMA                1                23
  RECTAL ADENOCARCINOMA                        0                57
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D367V6, multiclass
    clus
vv   NDUFAF4 MUTATED NDUFAF4 WILD-TYPE
  T1               0                 9
  T2               2                45
  T3               1               149
  T4               2                15
D367V7, multiclass
    clus
vv   NDUFAF4 MUTATED NDUFAF4 WILD-TYPE
  N0               4               130
  N1               0                44
  N2               1                45
D367V8, multiclass
     clus
vv    NDUFAF4 MUTATED NDUFAF4 WILD-TYPE
  M0                5               184
  M1                0                31
  M1A               0                 1
D367V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  NDUFAF4 MUTATED      5    0
  NDUFAF4 WILD-TYPE  211    8
     clus
vv    NDUFAF4 MUTATED NDUFAF4 WILD-TYPE
  NO                0                 8
  YES               5               211

Clustering(368) Variable = OR8K1 MUTATION ANALYSIS
D368V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE"   "OR8K1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR8K1 MUTATED" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR8K1 WILD-TYPE"   "OR8K1 MUTATED" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE"   "OR8K1 MUTATED" "OR8K1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE"   "OR8K1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR8K1 MUTATED" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR8K1 WILD-TYPE"   "OR8K1 MUTATED" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE"   "OR8K1 MUTATED" "OR8K1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE"   "OR8K1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR8K1 MUTATED" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR8K1 WILD-TYPE"   "OR8K1 MUTATED" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE"   "OR8K1 MUTATED" "OR8K1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
[1] "hr=" "3.7"
D368V2, continuous
D368V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8K1 MUTATED      4    2
  OR8K1 WILD-TYPE  150   66
        clus
vv       OR8K1 MUTATED OR8K1 WILD-TYPE
  COLON              4             150
  RECTUM             2              66
D368V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8K1 MUTATED      3    3
  OR8K1 WILD-TYPE  114  104
        clus
vv       OR8K1 MUTATED OR8K1 WILD-TYPE
  FEMALE             3             104
  MALE               3             114
D368V5, multiclass
                                clus
vv                               OR8K1 MUTATED OR8K1 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              0              24
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D368V6, multiclass
    clus
vv   OR8K1 MUTATED OR8K1 WILD-TYPE
  T1             1               8
  T2             2              45
  T3             0             150
  T4             3              14
D368V7, multiclass
    clus
vv   OR8K1 MUTATED OR8K1 WILD-TYPE
  N0             6             128
  N1             0              44
  N2             0              46
D368V8, multiclass
     clus
vv    OR8K1 MUTATED OR8K1 WILD-TYPE
  M0              5             184
  M1              0              31
  M1A             0               1
D368V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8K1 MUTATED      6    0
  OR8K1 WILD-TYPE  210    8
     clus
vv    OR8K1 MUTATED OR8K1 WILD-TYPE
  NO              0               8
  YES             6             210

Clustering(369) Variable = TNNI3K MUTATION ANALYSIS
D369V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TNNI3K WILD-TYPE"   "TNNI3K MUTATED" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TNNI3K WILD-TYPE"   "TNNI3K MUTATED" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
  "TNNI3K MUTATED" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TNNI3K WILD-TYPE"   "TNNI3K MUTATED" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "TNNI3K MUTATED" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TNNI3K WILD-TYPE"   "TNNI3K MUTATED" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TNNI3K WILD-TYPE"   "TNNI3K MUTATED" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
  "TNNI3K MUTATED" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TNNI3K WILD-TYPE"   "TNNI3K MUTATED" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "TNNI3K MUTATED" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TNNI3K WILD-TYPE"   "TNNI3K MUTATED" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TNNI3K WILD-TYPE"   "TNNI3K MUTATED" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
  "TNNI3K MUTATED" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TNNI3K WILD-TYPE"   "TNNI3K MUTATED" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "TNNI3K MUTATED" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
[1] "hr=" "2.4"
D369V2, continuous
D369V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TNNI3K MUTATED      8    2
  TNNI3K WILD-TYPE  146   66
        clus
vv       TNNI3K MUTATED TNNI3K WILD-TYPE
  COLON               8              146
  RECTUM              2               66
D369V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TNNI3K MUTATED      2    8
  TNNI3K WILD-TYPE  115   99
        clus
vv       TNNI3K MUTATED TNNI3K WILD-TYPE
  FEMALE              8               99
  MALE                2              115
D369V5, multiclass
                                clus
vv                               TNNI3K MUTATED TNNI3K WILD-TYPE
  COLON ADENOCARCINOMA                        7              121
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D369V6, multiclass
    clus
vv   TNNI3K MUTATED TNNI3K WILD-TYPE
  T1              1                8
  T2              3               44
  T3              5              145
  T4              1               16
D369V7, multiclass
    clus
vv   TNNI3K MUTATED TNNI3K WILD-TYPE
  N0              6              128
  N1              3               41
  N2              1               45
D369V8, multiclass
     clus
vv    TNNI3K MUTATED TNNI3K WILD-TYPE
  M0               8              181
  M1               2               29
  M1A              0                1
D369V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TNNI3K MUTATED     10    0
  TNNI3K WILD-TYPE  206    8
     clus
vv    TNNI3K MUTATED TNNI3K WILD-TYPE
  NO               0                8
  YES             10              206

Clustering(370) Variable = C1ORF173 MUTATION ANALYSIS
D370V1, survival
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
[1] "hr=" "1.8"
D370V2, continuous
D370V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C1ORF173 MUTATED      9    2
  C1ORF173 WILD-TYPE  145   66
        clus
vv       C1ORF173 MUTATED C1ORF173 WILD-TYPE
  COLON                 9                145
  RECTUM                2                 66
D370V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C1ORF173 MUTATED      6    5
  C1ORF173 WILD-TYPE  111  102
        clus
vv       C1ORF173 MUTATED C1ORF173 WILD-TYPE
  FEMALE                5                102
  MALE                  6                111
D370V5, multiclass
                                clus
vv                               C1ORF173 MUTATED C1ORF173 WILD-TYPE
  COLON ADENOCARCINOMA                          6                122
  COLON MUCINOUS ADENOCARCINOMA                 3                 21
  RECTAL ADENOCARCINOMA                         2                 55
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
D370V6, multiclass
    clus
vv   C1ORF173 MUTATED C1ORF173 WILD-TYPE
  T1                2                  7
  T2                3                 44
  T3                5                145
  T4                1                 16
D370V7, multiclass
    clus
vv   C1ORF173 MUTATED C1ORF173 WILD-TYPE
  N0                9                125
  N1                2                 42
  N2                0                 46
D370V8, multiclass
     clus
vv    C1ORF173 MUTATED C1ORF173 WILD-TYPE
  M0                10                179
  M1                 0                 31
  M1A                0                  1
D370V9, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C1ORF173 MUTATED     11    0
  C1ORF173 WILD-TYPE  205    8
     clus
vv    C1ORF173 MUTATED C1ORF173 WILD-TYPE
  NO                 0                  8
  YES               11                205

Clustering(371) Variable = GALNT14 MUTATION ANALYSIS
D371V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE"   "GALNT14 MUTATED" "GALNT14 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
  "GALNT14 MUTATED" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"GALNT14 WILD-TYPE"   "GALNT14 MUTATED" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "GALNT14 MUTATED" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE"   "GALNT14 MUTATED" "GALNT14 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
  "GALNT14 MUTATED" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"GALNT14 WILD-TYPE"   "GALNT14 MUTATED" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "GALNT14 MUTATED" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE"   "GALNT14 MUTATED" "GALNT14 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
  "GALNT14 MUTATED" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"GALNT14 WILD-TYPE"   "GALNT14 MUTATED" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "GALNT14 MUTATED" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
[1] "hr=" "2.5"
D371V2, continuous
D371V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  GALNT14 MUTATED      9    1
  GALNT14 WILD-TYPE  145   67
        clus
vv       GALNT14 MUTATED GALNT14 WILD-TYPE
  COLON                9               145
  RECTUM               1                67
D371V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  GALNT14 MUTATED      4    6
  GALNT14 WILD-TYPE  113  101
        clus
vv       GALNT14 MUTATED GALNT14 WILD-TYPE
  FEMALE               6               101
  MALE                 4               113
D371V5, multiclass
                                clus
vv                               GALNT14 MUTATED GALNT14 WILD-TYPE
  COLON ADENOCARCINOMA                         7               121
  COLON MUCINOUS ADENOCARCINOMA                2                22
  RECTAL ADENOCARCINOMA                        1                56
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D371V6, multiclass
    clus
vv   GALNT14 MUTATED GALNT14 WILD-TYPE
  T1               0                 9
  T2               0                47
  T3               6               144
  T4               4                13
D371V7, multiclass
    clus
vv   GALNT14 MUTATED GALNT14 WILD-TYPE
  N0               8               126
  N1               0                44
  N2               2                44
D371V8, multiclass
     clus
vv    GALNT14 MUTATED GALNT14 WILD-TYPE
  M0               10               179
  M1                0                31
  M1A               0                 1
D371V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  GALNT14 MUTATED     10    0
  GALNT14 WILD-TYPE  206    8
     clus
vv    GALNT14 MUTATED GALNT14 WILD-TYPE
  NO                0                 8
  YES              10               206

Clustering(372) Variable = SLC44A5 MUTATION ANALYSIS
D372V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
  "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
  "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
  "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
[1] "hr=" "2"  
D372V2, continuous
D372V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC44A5 MUTATED      6    3
  SLC44A5 WILD-TYPE  148   65
        clus
vv       SLC44A5 MUTATED SLC44A5 WILD-TYPE
  COLON                6               148
  RECTUM               3                65
D372V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC44A5 MUTATED      6    3
  SLC44A5 WILD-TYPE  111  104
        clus
vv       SLC44A5 MUTATED SLC44A5 WILD-TYPE
  FEMALE               3               104
  MALE                 6               111
D372V5, multiclass
                                clus
vv                               SLC44A5 MUTATED SLC44A5 WILD-TYPE
  COLON ADENOCARCINOMA                         4               124
  COLON MUCINOUS ADENOCARCINOMA                2                22
  RECTAL ADENOCARCINOMA                        3                54
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D372V6, multiclass
    clus
vv   SLC44A5 MUTATED SLC44A5 WILD-TYPE
  T1               1                 8
  T2               3                44
  T3               4               146
  T4               1                16
D372V7, multiclass
    clus
vv   SLC44A5 MUTATED SLC44A5 WILD-TYPE
  N0               7               127
  N1               2                42
  N2               0                46
D372V8, multiclass
     clus
vv    SLC44A5 MUTATED SLC44A5 WILD-TYPE
  M0                9               180
  M1                0                31
  M1A               0                 1
D372V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC44A5 MUTATED      9    0
  SLC44A5 WILD-TYPE  207    8
     clus
vv    SLC44A5 MUTATED SLC44A5 WILD-TYPE
  NO                0                 8
  YES               9               207

Clustering(373) Variable = TCERG1L MUTATION ANALYSIS
D373V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "TCERG1L MUTATED" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"TCERG1L WILD-TYPE"   "TCERG1L MUTATED" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
  "TCERG1L MUTATED" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "TCERG1L MUTATED" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"TCERG1L WILD-TYPE"   "TCERG1L MUTATED" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
  "TCERG1L MUTATED" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "TCERG1L MUTATED" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"TCERG1L WILD-TYPE"   "TCERG1L MUTATED" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
  "TCERG1L MUTATED" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" "TCERG1L WILD-TYPE" 
[1] "hr="     "2.6e+07"
D373V2, continuous
D373V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TCERG1L MUTATED      4    0
  TCERG1L WILD-TYPE  150   68
        clus
vv       TCERG1L MUTATED TCERG1L WILD-TYPE
  COLON                4               150
  RECTUM               0                68
D373V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TCERG1L MUTATED      2    2
  TCERG1L WILD-TYPE  115  105
        clus
vv       TCERG1L MUTATED TCERG1L WILD-TYPE
  FEMALE               2               105
  MALE                 2               115
D373V5, multiclass
                                clus
vv                               TCERG1L MUTATED TCERG1L WILD-TYPE
  COLON ADENOCARCINOMA                         3               125
  COLON MUCINOUS ADENOCARCINOMA                1                23
  RECTAL ADENOCARCINOMA                        0                57
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D373V6, multiclass
    clus
vv   TCERG1L MUTATED TCERG1L WILD-TYPE
  T1               0                 9
  T2               0                47
  T3               3               147
  T4               1                16
D373V7, multiclass
    clus
vv   TCERG1L MUTATED TCERG1L WILD-TYPE
  N0               3               131
  N1               0                44
  N2               1                45
D373V8, multiclass
     clus
vv    TCERG1L MUTATED TCERG1L WILD-TYPE
  M0                4               185
  M1                0                31
  M1A               0                 1
D373V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TCERG1L MUTATED      4    0
  TCERG1L WILD-TYPE  212    8
     clus
vv    TCERG1L MUTATED TCERG1L WILD-TYPE
  NO                0                 8
  YES               4               212

Clustering(374) Variable = ARAP2 MUTATION ANALYSIS
D374V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE"   "ARAP2 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE"   "ARAP2 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ARAP2 WILD-TYPE"   "ARAP2 MUTATED" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE"   "ARAP2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE"   "ARAP2 MUTATED" "ARAP2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ARAP2 MUTATED" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "ARAP2 MUTATED" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ARAP2 WILD-TYPE"   "ARAP2 MUTATED" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ARAP2 MUTATED" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE"   "ARAP2 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE"   "ARAP2 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ARAP2 WILD-TYPE"   "ARAP2 MUTATED" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE"   "ARAP2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE"   "ARAP2 MUTATED" "ARAP2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ARAP2 MUTATED" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "ARAP2 MUTATED" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ARAP2 WILD-TYPE"   "ARAP2 MUTATED" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ARAP2 MUTATED" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE"   "ARAP2 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE"   "ARAP2 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ARAP2 WILD-TYPE"   "ARAP2 MUTATED" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE"   "ARAP2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE"   "ARAP2 MUTATED" "ARAP2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ARAP2 MUTATED" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "ARAP2 MUTATED" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ARAP2 WILD-TYPE"   "ARAP2 MUTATED" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ARAP2 MUTATED" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" "ARAP2 WILD-TYPE" 
[1] "hr="     "7.6e+07"
D374V2, continuous
D374V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ARAP2 MUTATED     11    2
  ARAP2 WILD-TYPE  143   66
        clus
vv       ARAP2 MUTATED ARAP2 WILD-TYPE
  COLON             11             143
  RECTUM             2              66
D374V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ARAP2 MUTATED      5    8
  ARAP2 WILD-TYPE  112   99
        clus
vv       ARAP2 MUTATED ARAP2 WILD-TYPE
  FEMALE             8              99
  MALE               5             112
D374V5, multiclass
                                clus
vv                               ARAP2 MUTATED ARAP2 WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D374V6, multiclass
    clus
vv   ARAP2 MUTATED ARAP2 WILD-TYPE
  T1             1               8
  T2             4              43
  T3             5             145
  T4             3              14
D374V7, multiclass
    clus
vv   ARAP2 MUTATED ARAP2 WILD-TYPE
  N0             9             125
  N1             2              42
  N2             2              44
D374V8, multiclass
     clus
vv    ARAP2 MUTATED ARAP2 WILD-TYPE
  M0             11             178
  M1              0              31
  M1A             1               0
D374V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ARAP2 MUTATED     12    1
  ARAP2 WILD-TYPE  204    7
     clus
vv    ARAP2 MUTATED ARAP2 WILD-TYPE
  NO              1               7
  YES            12             204

Clustering(375) Variable = CD93 MUTATION ANALYSIS
D375V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CD93 WILD-TYPE" "CD93 WILD-TYPE"   "CD93 MUTATED" "CD93 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CD93 WILD-TYPE" "CD93 WILD-TYPE"   "CD93 MUTATED" "CD93 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CD93 WILD-TYPE"   "CD93 MUTATED" "CD93 WILD-TYPE"   "CD93 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE"   "CD93 MUTATED" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE"   "CD93 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "CD93 MUTATED" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CD93 WILD-TYPE" "CD93 WILD-TYPE"   "CD93 MUTATED" "CD93 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CD93 WILD-TYPE" "CD93 WILD-TYPE"   "CD93 MUTATED" "CD93 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CD93 WILD-TYPE"   "CD93 MUTATED" "CD93 WILD-TYPE"   "CD93 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE"   "CD93 MUTATED" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE"   "CD93 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "CD93 MUTATED" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CD93 WILD-TYPE" "CD93 WILD-TYPE"   "CD93 MUTATED" "CD93 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CD93 WILD-TYPE" "CD93 WILD-TYPE"   "CD93 MUTATED" "CD93 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CD93 WILD-TYPE"   "CD93 MUTATED" "CD93 WILD-TYPE"   "CD93 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE"   "CD93 MUTATED" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE"   "CD93 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "CD93 MUTATED" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
[1] "hr=" "2.9"
D375V2, continuous
D375V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD93 MUTATED      6    1
  CD93 WILD-TYPE  148   67
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  COLON             6            148
  RECTUM            1             67
D375V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD93 MUTATED      3    4
  CD93 WILD-TYPE  114  103
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  FEMALE            4            103
  MALE              3            114
D375V5, multiclass
                                clus
vv                               CD93 MUTATED CD93 WILD-TYPE
  COLON ADENOCARCINOMA                      3            125
  COLON MUCINOUS ADENOCARCINOMA             3             21
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D375V6, multiclass
    clus
vv   CD93 MUTATED CD93 WILD-TYPE
  T1            0              9
  T2            1             46
  T3            5            145
  T4            1             16
D375V7, multiclass
    clus
vv   CD93 MUTATED CD93 WILD-TYPE
  N0            6            128
  N1            0             44
  N2            1             45
D375V8, multiclass
     clus
vv    CD93 MUTATED CD93 WILD-TYPE
  M0             5            184
  M1             1             30
  M1A            0              1
D375V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD93 MUTATED      7    0
  CD93 WILD-TYPE  209    8
     clus
vv    CD93 MUTATED CD93 WILD-TYPE
  NO             0              8
  YES            7            209

Clustering(376) Variable = NOC3L MUTATION ANALYSIS
D376V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE"   "NOC3L MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE"   "NOC3L MUTATED" "NOC3L WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE"   "NOC3L MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NOC3L MUTATED" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE"   "NOC3L MUTATED" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NOC3L WILD-TYPE"   "NOC3L MUTATED" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NOC3L MUTATED" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE"   "NOC3L MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE"   "NOC3L MUTATED" "NOC3L WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE"   "NOC3L MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NOC3L MUTATED" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE"   "NOC3L MUTATED" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NOC3L WILD-TYPE"   "NOC3L MUTATED" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NOC3L MUTATED" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE"   "NOC3L MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE"   "NOC3L MUTATED" "NOC3L WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE"   "NOC3L MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NOC3L MUTATED" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE"   "NOC3L MUTATED" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NOC3L WILD-TYPE"   "NOC3L MUTATED" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NOC3L MUTATED" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" "NOC3L WILD-TYPE" 
[1] "hr="     "2.7e+07"
D376V2, continuous
D376V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NOC3L MUTATED      5    3
  NOC3L WILD-TYPE  149   65
        clus
vv       NOC3L MUTATED NOC3L WILD-TYPE
  COLON              5             149
  RECTUM             3              65
D376V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NOC3L MUTATED      5    3
  NOC3L WILD-TYPE  112  104
        clus
vv       NOC3L MUTATED NOC3L WILD-TYPE
  FEMALE             3             104
  MALE               5             112
D376V5, multiclass
                                clus
vv                               NOC3L MUTATED NOC3L WILD-TYPE
  COLON ADENOCARCINOMA                       5             123
  COLON MUCINOUS ADENOCARCINOMA              0              24
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D376V6, multiclass
    clus
vv   NOC3L MUTATED NOC3L WILD-TYPE
  T1             1               8
  T2             3              44
  T3             2             148
  T4             2              15
D376V7, multiclass
    clus
vv   NOC3L MUTATED NOC3L WILD-TYPE
  N0             8             126
  N1             0              44
  N2             0              46
D376V8, multiclass
     clus
vv    NOC3L MUTATED NOC3L WILD-TYPE
  M0              7             182
  M1              0              31
  M1A             0               1
D376V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NOC3L MUTATED      8    0
  NOC3L WILD-TYPE  208    8
     clus
vv    NOC3L MUTATED NOC3L WILD-TYPE
  NO              0               8
  YES             8             208

Clustering(377) Variable = SLC24A2 MUTATION ANALYSIS
D377V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE"   "SLC24A2 MUTATED" "SLC24A2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE"   "SLC24A2 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE"   "SLC24A2 MUTATED" "SLC24A2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLC24A2 MUTATED" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLC24A2 WILD-TYPE"   "SLC24A2 MUTATED" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE"   "SLC24A2 MUTATED" "SLC24A2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE"   "SLC24A2 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE"   "SLC24A2 MUTATED" "SLC24A2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLC24A2 MUTATED" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLC24A2 WILD-TYPE"   "SLC24A2 MUTATED" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE"   "SLC24A2 MUTATED" "SLC24A2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE"   "SLC24A2 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE"   "SLC24A2 MUTATED" "SLC24A2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLC24A2 MUTATED" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLC24A2 WILD-TYPE"   "SLC24A2 MUTATED" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" "SLC24A2 WILD-TYPE" 
[1] "hr=" "2"  
D377V2, continuous
D377V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC24A2 MUTATED      5    2
  SLC24A2 WILD-TYPE  149   66
        clus
vv       SLC24A2 MUTATED SLC24A2 WILD-TYPE
  COLON                5               149
  RECTUM               2                66
D377V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC24A2 MUTATED      2    5
  SLC24A2 WILD-TYPE  115  102
        clus
vv       SLC24A2 MUTATED SLC24A2 WILD-TYPE
  FEMALE               5               102
  MALE                 2               115
D377V5, multiclass
                                clus
vv                               SLC24A2 MUTATED SLC24A2 WILD-TYPE
  COLON ADENOCARCINOMA                         4               124
  COLON MUCINOUS ADENOCARCINOMA                1                23
  RECTAL ADENOCARCINOMA                        0                57
  RECTAL MUCINOUS ADENOCARCINOMA               2                 6
D377V6, multiclass
    clus
vv   SLC24A2 MUTATED SLC24A2 WILD-TYPE
  T1               0                 9
  T2               1                46
  T3               4               146
  T4               2                15
D377V7, multiclass
    clus
vv   SLC24A2 MUTATED SLC24A2 WILD-TYPE
  N0               5               129
  N1               1                43
  N2               1                45
D377V8, multiclass
     clus
vv    SLC24A2 MUTATED SLC24A2 WILD-TYPE
  M0                6               183
  M1                0                31
  M1A               0                 1
D377V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC24A2 MUTATED      6    1
  SLC24A2 WILD-TYPE  210    7
     clus
vv    SLC24A2 MUTATED SLC24A2 WILD-TYPE
  NO                1                 7
  YES               6               210

Clustering(378) Variable = GABRG2 MUTATION ANALYSIS
D378V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE"   "GABRG2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE"   "GABRG2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "GABRG2 MUTATED" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
  "GABRG2 MUTATED" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE"   "GABRG2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE"   "GABRG2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "GABRG2 MUTATED" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
  "GABRG2 MUTATED" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE"   "GABRG2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE"   "GABRG2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "GABRG2 MUTATED" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
  "GABRG2 MUTATED" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D378V2, continuous
D378V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRG2 MUTATED      6    2
  GABRG2 WILD-TYPE  148   66
        clus
vv       GABRG2 MUTATED GABRG2 WILD-TYPE
  COLON               6              148
  RECTUM              2               66
D378V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRG2 MUTATED      5    3
  GABRG2 WILD-TYPE  112  104
        clus
vv       GABRG2 MUTATED GABRG2 WILD-TYPE
  FEMALE              3              104
  MALE                5              112
D378V5, multiclass
                                clus
vv                               GABRG2 MUTATED GABRG2 WILD-TYPE
  COLON ADENOCARCINOMA                        6              122
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D378V6, multiclass
    clus
vv   GABRG2 MUTATED GABRG2 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              5              145
  T4              1               16
D378V7, multiclass
    clus
vv   GABRG2 MUTATED GABRG2 WILD-TYPE
  N0              6              128
  N1              0               44
  N2              2               44
D378V8, multiclass
     clus
vv    GABRG2 MUTATED GABRG2 WILD-TYPE
  M0               6              183
  M1               1               30
  M1A              0                1
D378V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRG2 MUTATED      8    0
  GABRG2 WILD-TYPE  208    8
     clus
vv    GABRG2 MUTATED GABRG2 WILD-TYPE
  NO               0                8
  YES              8              208

Clustering(379) Variable = TRIM44 MUTATION ANALYSIS
D379V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE"   "TRIM44 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE"   "TRIM44 MUTATED" "TRIM44 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "TRIM44 MUTATED" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE"   "TRIM44 MUTATED" "TRIM44 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE"   "TRIM44 MUTATED" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TRIM44 WILD-TYPE"   "TRIM44 MUTATED" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE"   "TRIM44 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE"   "TRIM44 MUTATED" "TRIM44 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "TRIM44 MUTATED" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE"   "TRIM44 MUTATED" "TRIM44 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE"   "TRIM44 MUTATED" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TRIM44 WILD-TYPE"   "TRIM44 MUTATED" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE"   "TRIM44 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE"   "TRIM44 MUTATED" "TRIM44 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "TRIM44 MUTATED" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE"   "TRIM44 MUTATED" "TRIM44 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE"   "TRIM44 MUTATED" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TRIM44 WILD-TYPE"   "TRIM44 MUTATED" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
[1] "hr=" "1.2"
D379V2, continuous
D379V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM44 MUTATED      5    1
  TRIM44 WILD-TYPE  149   67
        clus
vv       TRIM44 MUTATED TRIM44 WILD-TYPE
  COLON               5              149
  RECTUM              1               67
D379V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM44 MUTATED      2    4
  TRIM44 WILD-TYPE  115  103
        clus
vv       TRIM44 MUTATED TRIM44 WILD-TYPE
  FEMALE              4              103
  MALE                2              115
D379V5, multiclass
                                clus
vv                               TRIM44 MUTATED TRIM44 WILD-TYPE
  COLON ADENOCARCINOMA                        1              127
  COLON MUCINOUS ADENOCARCINOMA               4               20
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D379V6, multiclass
    clus
vv   TRIM44 MUTATED TRIM44 WILD-TYPE
  T1              1                8
  T2              0               47
  T3              2              148
  T4              2               15
D379V7, multiclass
    clus
vv   TRIM44 MUTATED TRIM44 WILD-TYPE
  N0              5              129
  N1              1               43
  N2              0               46
D379V8, multiclass
     clus
vv    TRIM44 MUTATED TRIM44 WILD-TYPE
  M0               5              184
  M1               1               30
  M1A              0                1
D379V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM44 MUTATED      4    2
  TRIM44 WILD-TYPE  212    6
     clus
vv    TRIM44 MUTATED TRIM44 WILD-TYPE
  NO               2                6
  YES              4              212

Clustering(380) Variable = ANKIB1 MUTATION ANALYSIS
D380V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ANKIB1 WILD-TYPE"   "ANKIB1 MUTATED" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ANKIB1 WILD-TYPE"   "ANKIB1 MUTATED" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ANKIB1 WILD-TYPE"   "ANKIB1 MUTATED" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ANKIB1 WILD-TYPE"   "ANKIB1 MUTATED" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ANKIB1 MUTATED" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ANKIB1 WILD-TYPE"   "ANKIB1 MUTATED" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ANKIB1 WILD-TYPE"   "ANKIB1 MUTATED" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ANKIB1 WILD-TYPE"   "ANKIB1 MUTATED" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ANKIB1 WILD-TYPE"   "ANKIB1 MUTATED" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ANKIB1 MUTATED" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ANKIB1 WILD-TYPE"   "ANKIB1 MUTATED" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ANKIB1 WILD-TYPE"   "ANKIB1 MUTATED" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ANKIB1 WILD-TYPE"   "ANKIB1 MUTATED" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ANKIB1 WILD-TYPE"   "ANKIB1 MUTATED" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ANKIB1 MUTATED" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" "ANKIB1 WILD-TYPE" 
[1] "hr=" "1.7"
D380V2, continuous
D380V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ANKIB1 MUTATED      7    1
  ANKIB1 WILD-TYPE  147   67
        clus
vv       ANKIB1 MUTATED ANKIB1 WILD-TYPE
  COLON               7              147
  RECTUM              1               67
D380V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ANKIB1 MUTATED      4    4
  ANKIB1 WILD-TYPE  113  103
        clus
vv       ANKIB1 MUTATED ANKIB1 WILD-TYPE
  FEMALE              4              103
  MALE                4              113
D380V5, multiclass
                                clus
vv                               ANKIB1 MUTATED ANKIB1 WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               3               21
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D380V6, multiclass
    clus
vv   ANKIB1 MUTATED ANKIB1 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              4              146
  T4              2               15
D380V7, multiclass
    clus
vv   ANKIB1 MUTATED ANKIB1 WILD-TYPE
  N0              4              130
  N1              2               42
  N2              2               44
D380V8, multiclass
     clus
vv    ANKIB1 MUTATED ANKIB1 WILD-TYPE
  M0               7              182
  M1               1               30
  M1A              0                1
D380V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ANKIB1 MUTATED      8    0
  ANKIB1 WILD-TYPE  208    8
     clus
vv    ANKIB1 MUTATED ANKIB1 WILD-TYPE
  NO               0                8
  YES              8              208

Clustering(381) Variable = RHOA MUTATION ANALYSIS
D381V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE"   "RHOA MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"RHOA WILD-TYPE"   "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"RHOA WILD-TYPE"   "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE"   "RHOA MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"RHOA WILD-TYPE"   "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"RHOA WILD-TYPE"   "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE"   "RHOA MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"RHOA WILD-TYPE"   "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"RHOA WILD-TYPE"   "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
[1] "hr=" "2.4"
D381V2, continuous
D381V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RHOA MUTATED      4    1
  RHOA WILD-TYPE  150   67
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  COLON             4            150
  RECTUM            1             67
D381V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RHOA MUTATED      2    3
  RHOA WILD-TYPE  115  104
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  FEMALE            3            104
  MALE              2            115
D381V5, multiclass
                                clus
vv                               RHOA MUTATED RHOA WILD-TYPE
  COLON ADENOCARCINOMA                      2            126
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D381V6, multiclass
    clus
vv   RHOA MUTATED RHOA WILD-TYPE
  T1            1              8
  T2            0             47
  T3            4            146
  T4            0             17
D381V7, multiclass
    clus
vv   RHOA MUTATED RHOA WILD-TYPE
  N0            2            132
  N1            2             42
  N2            1             45
D381V8, multiclass
     clus
vv    RHOA MUTATED RHOA WILD-TYPE
  M0             4            185
  M1             1             30
  M1A            0              1
D381V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RHOA MUTATED      5    0
  RHOA WILD-TYPE  211    8
     clus
vv    RHOA MUTATED RHOA WILD-TYPE
  NO             0              8
  YES            5            211

Clustering(382) Variable = PPP3CB MUTATION ANALYSIS
D382V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "PPP3CB MUTATED" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE"   "PPP3CB MUTATED" "PPP3CB WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PPP3CB WILD-TYPE"   "PPP3CB MUTATED" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PPP3CB MUTATED" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "PPP3CB MUTATED" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE"   "PPP3CB MUTATED" "PPP3CB WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PPP3CB WILD-TYPE"   "PPP3CB MUTATED" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PPP3CB MUTATED" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "PPP3CB MUTATED" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE"   "PPP3CB MUTATED" "PPP3CB WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PPP3CB WILD-TYPE"   "PPP3CB MUTATED" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PPP3CB MUTATED" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" "PPP3CB WILD-TYPE" 
[1] "hr=" "3.5"
D382V2, continuous
D382V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PPP3CB MUTATED      4    1
  PPP3CB WILD-TYPE  150   67
        clus
vv       PPP3CB MUTATED PPP3CB WILD-TYPE
  COLON               4              150
  RECTUM              1               67
D382V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PPP3CB MUTATED      2    3
  PPP3CB WILD-TYPE  115  104
        clus
vv       PPP3CB MUTATED PPP3CB WILD-TYPE
  FEMALE              3              104
  MALE                2              115
D382V5, multiclass
                                clus
vv                               PPP3CB MUTATED PPP3CB WILD-TYPE
  COLON ADENOCARCINOMA                        0              128
  COLON MUCINOUS ADENOCARCINOMA               3               21
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D382V6, multiclass
    clus
vv   PPP3CB MUTATED PPP3CB WILD-TYPE
  T1              0                9
  T2              2               45
  T3              2              148
  T4              1               16
D382V7, multiclass
    clus
vv   PPP3CB MUTATED PPP3CB WILD-TYPE
  N0              5              129
  N1              0               44
  N2              0               46
D382V8, multiclass
     clus
vv    PPP3CB MUTATED PPP3CB WILD-TYPE
  M0               5              184
  M1               0               31
  M1A              0                1
D382V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PPP3CB MUTATED      5    0
  PPP3CB WILD-TYPE  211    8
     clus
vv    PPP3CB MUTATED PPP3CB WILD-TYPE
  NO               0                8
  YES              5              211

Clustering(383) Variable = NTSR2 MUTATION ANALYSIS
D383V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE"   "NTSR2 MUTATED" "NTSR2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "NTSR2 MUTATED" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE"   "NTSR2 MUTATED" "NTSR2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "NTSR2 MUTATED" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE"   "NTSR2 MUTATED" "NTSR2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "NTSR2 MUTATED" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
[1] "Remove cluster labels:" "NTSR2 MUTATED"         
clus
  NTSR2 MUTATED NTSR2 WILD-TYPE 
              2             118 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3949      TCGA-AA-3952 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977      TCGA-AA-3986 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01R 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V      TCGA-AA-A01X 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A01Z      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02O      TCGA-AA-A02W 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AY-4070 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AY-4071      TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581      TCGA-AG-3582 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599      TCGA-AG-3726 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887      TCGA-AG-3892 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999      TCGA-AG-4001 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002      TCGA-AG-A008 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A025 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N      TCGA-AG-A02X 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
     TCGA-AG-A032      TCGA-AG-A036 
"NTSR2 WILD-TYPE" "NTSR2 WILD-TYPE" 
D383V2, continuous
D383V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NTSR2 MUTATED      4    1
  NTSR2 WILD-TYPE  150   67
        clus
vv       NTSR2 MUTATED NTSR2 WILD-TYPE
  COLON              4             150
  RECTUM             1              67
D383V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NTSR2 MUTATED      2    3
  NTSR2 WILD-TYPE  115  104
        clus
vv       NTSR2 MUTATED NTSR2 WILD-TYPE
  FEMALE             3             104
  MALE               2             115
D383V5, multiclass
                                clus
vv                               NTSR2 MUTATED NTSR2 WILD-TYPE
  COLON ADENOCARCINOMA                       2             126
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D383V6, multiclass
    clus
vv   NTSR2 MUTATED NTSR2 WILD-TYPE
  T1             0               9
  T2             0              47
  T3             4             146
  T4             1              16
D383V7, multiclass
    clus
vv   NTSR2 MUTATED NTSR2 WILD-TYPE
  N0             4             130
  N1             0              44
  N2             1              45
D383V8, multiclass
     clus
vv    NTSR2 MUTATED NTSR2 WILD-TYPE
  M0              4             185
  M1              1              30
  M1A             0               1
D383V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NTSR2 MUTATED      5    0
  NTSR2 WILD-TYPE  211    8
     clus
vv    NTSR2 MUTATED NTSR2 WILD-TYPE
  NO              0               8
  YES             5             211

Clustering(384) Variable = TFAP2D MUTATION ANALYSIS
D384V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TFAP2D WILD-TYPE"   "TFAP2D MUTATED" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
  "TFAP2D MUTATED" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "TFAP2D MUTATED" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TFAP2D WILD-TYPE"   "TFAP2D MUTATED" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
  "TFAP2D MUTATED" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "TFAP2D MUTATED" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TFAP2D WILD-TYPE"   "TFAP2D MUTATED" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
  "TFAP2D MUTATED" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "TFAP2D MUTATED" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
[1] "hr="     "9200000"
D384V2, continuous
D384V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TFAP2D MUTATED      5    2
  TFAP2D WILD-TYPE  149   66
        clus
vv       TFAP2D MUTATED TFAP2D WILD-TYPE
  COLON               5              149
  RECTUM              2               66
D384V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TFAP2D MUTATED      2    5
  TFAP2D WILD-TYPE  115  102
        clus
vv       TFAP2D MUTATED TFAP2D WILD-TYPE
  FEMALE              5              102
  MALE                2              115
D384V5, multiclass
                                clus
vv                               TFAP2D MUTATED TFAP2D WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D384V6, multiclass
    clus
vv   TFAP2D MUTATED TFAP2D WILD-TYPE
  T1              0                9
  T2              3               44
  T3              4              146
  T4              0               17
D384V7, multiclass
    clus
vv   TFAP2D MUTATED TFAP2D WILD-TYPE
  N0              5              129
  N1              1               43
  N2              1               45
D384V8, multiclass
     clus
vv    TFAP2D MUTATED TFAP2D WILD-TYPE
  M0               7              182
  M1               0               31
  M1A              0                1
D384V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TFAP2D MUTATED      7    0
  TFAP2D WILD-TYPE  209    8
     clus
vv    TFAP2D MUTATED TFAP2D WILD-TYPE
  NO               0                8
  YES              7              209

Clustering(385) Variable = DYRK3 MUTATION ANALYSIS
D385V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE"   "DYRK3 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE"   "DYRK3 MUTATED" "DYRK3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DYRK3 WILD-TYPE"   "DYRK3 MUTATED" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DYRK3 MUTATED" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DYRK3 WILD-TYPE"   "DYRK3 MUTATED" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE"   "DYRK3 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE"   "DYRK3 MUTATED" "DYRK3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DYRK3 WILD-TYPE"   "DYRK3 MUTATED" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DYRK3 MUTATED" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DYRK3 WILD-TYPE"   "DYRK3 MUTATED" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE"   "DYRK3 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE"   "DYRK3 MUTATED" "DYRK3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DYRK3 WILD-TYPE"   "DYRK3 MUTATED" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DYRK3 MUTATED" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DYRK3 WILD-TYPE"   "DYRK3 MUTATED" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" "DYRK3 WILD-TYPE" 
[1] "hr=" "2.2"
D385V2, continuous
D385V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DYRK3 MUTATED      5    2
  DYRK3 WILD-TYPE  149   66
        clus
vv       DYRK3 MUTATED DYRK3 WILD-TYPE
  COLON              5             149
  RECTUM             2              66
D385V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DYRK3 MUTATED      2    5
  DYRK3 WILD-TYPE  115  102
        clus
vv       DYRK3 MUTATED DYRK3 WILD-TYPE
  FEMALE             5             102
  MALE               2             115
D385V5, multiclass
                                clus
vv                               DYRK3 MUTATED DYRK3 WILD-TYPE
  COLON ADENOCARCINOMA                       2             126
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D385V6, multiclass
    clus
vv   DYRK3 MUTATED DYRK3 WILD-TYPE
  T1             1               8
  T2             1              46
  T3             1             149
  T4             4              13
D385V7, multiclass
    clus
vv   DYRK3 MUTATED DYRK3 WILD-TYPE
  N0             6             128
  N1             1              43
  N2             0              46
D385V8, multiclass
     clus
vv    DYRK3 MUTATED DYRK3 WILD-TYPE
  M0              7             182
  M1              0              31
  M1A             0               1
D385V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DYRK3 MUTATED      7    0
  DYRK3 WILD-TYPE  209    8
     clus
vv    DYRK3 MUTATED DYRK3 WILD-TYPE
  NO              0               8
  YES             7             209

Clustering(386) Variable = PCDHB2 MUTATION ANALYSIS
D386V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED"   "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED"   "PCDHB2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED"   "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED"   "PCDHB2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED"   "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED"   "PCDHB2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
[1] "hr="     "7.6e+07"
D386V2, continuous
D386V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDHB2 MUTATED     13    1
  PCDHB2 WILD-TYPE  141   67
        clus
vv       PCDHB2 MUTATED PCDHB2 WILD-TYPE
  COLON              13              141
  RECTUM              1               67
D386V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDHB2 MUTATED      6    8
  PCDHB2 WILD-TYPE  111   99
        clus
vv       PCDHB2 MUTATED PCDHB2 WILD-TYPE
  FEMALE              8               99
  MALE                6              111
D386V5, multiclass
                                clus
vv                               PCDHB2 MUTATED PCDHB2 WILD-TYPE
  COLON ADENOCARCINOMA                       11              117
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D386V6, multiclass
    clus
vv   PCDHB2 MUTATED PCDHB2 WILD-TYPE
  T1              0                9
  T2              3               44
  T3              9              141
  T4              2               15
D386V7, multiclass
    clus
vv   PCDHB2 MUTATED PCDHB2 WILD-TYPE
  N0              8              126
  N1              4               40
  N2              2               44
D386V8, multiclass
     clus
vv    PCDHB2 MUTATED PCDHB2 WILD-TYPE
  M0              11              178
  M1               2               29
  M1A              0                1
D386V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDHB2 MUTATED     13    1
  PCDHB2 WILD-TYPE  203    7
     clus
vv    PCDHB2 MUTATED PCDHB2 WILD-TYPE
  NO               1                7
  YES             13              203

Clustering(387) Variable = SCN10A MUTATION ANALYSIS
D387V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "SCN10A MUTATED" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE"   "SCN10A MUTATED" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE"   "SCN10A MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "SCN10A MUTATED" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE"   "SCN10A MUTATED" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SCN10A WILD-TYPE"   "SCN10A MUTATED" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SCN10A WILD-TYPE"   "SCN10A MUTATED" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SCN10A MUTATED" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SCN10A WILD-TYPE"   "SCN10A MUTATED" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE"   "SCN10A MUTATED" "SCN10A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SCN10A MUTATED" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "SCN10A MUTATED" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE"   "SCN10A MUTATED" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE"   "SCN10A MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "SCN10A MUTATED" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE"   "SCN10A MUTATED" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SCN10A WILD-TYPE"   "SCN10A MUTATED" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SCN10A WILD-TYPE"   "SCN10A MUTATED" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SCN10A MUTATED" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SCN10A WILD-TYPE"   "SCN10A MUTATED" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE"   "SCN10A MUTATED" "SCN10A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SCN10A MUTATED" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "SCN10A MUTATED" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE"   "SCN10A MUTATED" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE"   "SCN10A MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "SCN10A MUTATED" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE"   "SCN10A MUTATED" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SCN10A WILD-TYPE"   "SCN10A MUTATED" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SCN10A WILD-TYPE"   "SCN10A MUTATED" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SCN10A MUTATED" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SCN10A WILD-TYPE"   "SCN10A MUTATED" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE"   "SCN10A MUTATED" "SCN10A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SCN10A MUTATED" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" "SCN10A WILD-TYPE" 
[1] "hr=" "1.1"
D387V2, continuous
D387V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SCN10A MUTATED     13    2
  SCN10A WILD-TYPE  141   66
        clus
vv       SCN10A MUTATED SCN10A WILD-TYPE
  COLON              13              141
  RECTUM              2               66
D387V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SCN10A MUTATED     10    5
  SCN10A WILD-TYPE  107  102
        clus
vv       SCN10A MUTATED SCN10A WILD-TYPE
  FEMALE              5              102
  MALE               10              107
D387V5, multiclass
                                clus
vv                               SCN10A MUTATED SCN10A WILD-TYPE
  COLON ADENOCARCINOMA                        8              120
  COLON MUCINOUS ADENOCARCINOMA               4               20
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D387V6, multiclass
    clus
vv   SCN10A MUTATED SCN10A WILD-TYPE
  T1              0                9
  T2              4               43
  T3              9              141
  T4              2               15
D387V7, multiclass
    clus
vv   SCN10A MUTATED SCN10A WILD-TYPE
  N0             10              124
  N1              2               42
  N2              3               43
D387V8, multiclass
     clus
vv    SCN10A MUTATED SCN10A WILD-TYPE
  M0              13              176
  M1               0               31
  M1A              0                1
D387V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SCN10A MUTATED     15    0
  SCN10A WILD-TYPE  201    8
     clus
vv    SCN10A MUTATED SCN10A WILD-TYPE
  NO               0                8
  YES             15              201

Clustering(388) Variable = KCNH5 MUTATION ANALYSIS
D388V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "KCNH5 MUTATED" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE"   "KCNH5 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "KCNH5 MUTATED" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNH5 WILD-TYPE"   "KCNH5 MUTATED" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNH5 WILD-TYPE"   "KCNH5 MUTATED" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE"   "KCNH5 MUTATED" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KCNH5 WILD-TYPE"   "KCNH5 MUTATED" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "KCNH5 MUTATED" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE"   "KCNH5 MUTATED" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "KCNH5 MUTATED" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE"   "KCNH5 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "KCNH5 MUTATED" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNH5 WILD-TYPE"   "KCNH5 MUTATED" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNH5 WILD-TYPE"   "KCNH5 MUTATED" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE"   "KCNH5 MUTATED" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KCNH5 WILD-TYPE"   "KCNH5 MUTATED" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "KCNH5 MUTATED" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE"   "KCNH5 MUTATED" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "KCNH5 MUTATED" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE"   "KCNH5 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "KCNH5 MUTATED" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNH5 WILD-TYPE"   "KCNH5 MUTATED" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNH5 WILD-TYPE"   "KCNH5 MUTATED" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE"   "KCNH5 MUTATED" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KCNH5 WILD-TYPE"   "KCNH5 MUTATED" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "KCNH5 MUTATED" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE"   "KCNH5 MUTATED" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
[1] "hr="     "7.5e+07"
D388V2, continuous
D388V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNH5 MUTATED      9    4
  KCNH5 WILD-TYPE  145   64
        clus
vv       KCNH5 MUTATED KCNH5 WILD-TYPE
  COLON              9             145
  RECTUM             4              64
D388V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNH5 MUTATED      7    6
  KCNH5 WILD-TYPE  110  101
        clus
vv       KCNH5 MUTATED KCNH5 WILD-TYPE
  FEMALE             6             101
  MALE               7             110
D388V5, multiclass
                                clus
vv                               KCNH5 MUTATED KCNH5 WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D388V6, multiclass
    clus
vv   KCNH5 MUTATED KCNH5 WILD-TYPE
  T1             2               7
  T2             5              42
  T3             5             145
  T4             1              16
D388V7, multiclass
    clus
vv   KCNH5 MUTATED KCNH5 WILD-TYPE
  N0            10             124
  N1             1              43
  N2             2              44
D388V8, multiclass
     clus
vv    KCNH5 MUTATED KCNH5 WILD-TYPE
  M0             11             178
  M1              1              30
  M1A             0               1
D388V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNH5 MUTATED     13    0
  KCNH5 WILD-TYPE  203    8
     clus
vv    KCNH5 MUTATED KCNH5 WILD-TYPE
  NO              0               8
  YES            13             203

Clustering(389) Variable = ZNF429 MUTATION ANALYSIS
D389V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE"   "ZNF429 MUTATED"   "ZNF429 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF429 WILD-TYPE"   "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF429 WILD-TYPE"   "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE"   "ZNF429 MUTATED"   "ZNF429 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF429 WILD-TYPE"   "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF429 WILD-TYPE"   "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE"   "ZNF429 MUTATED"   "ZNF429 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF429 WILD-TYPE"   "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF429 WILD-TYPE"   "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
[1] "hr=" "1.5"
D389V2, continuous
D389V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF429 MUTATED      7    2
  ZNF429 WILD-TYPE  147   66
        clus
vv       ZNF429 MUTATED ZNF429 WILD-TYPE
  COLON               7              147
  RECTUM              2               66
D389V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF429 MUTATED      7    2
  ZNF429 WILD-TYPE  110  105
        clus
vv       ZNF429 MUTATED ZNF429 WILD-TYPE
  FEMALE              2              105
  MALE                7              110
D389V5, multiclass
                                clus
vv                               ZNF429 MUTATED ZNF429 WILD-TYPE
  COLON ADENOCARCINOMA                        6              122
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D389V6, multiclass
    clus
vv   ZNF429 MUTATED ZNF429 WILD-TYPE
  T1              1                8
  T2              4               43
  T3              2              148
  T4              2               15
D389V7, multiclass
    clus
vv   ZNF429 MUTATED ZNF429 WILD-TYPE
  N0              8              126
  N1              1               43
  N2              0               46
D389V8, multiclass
     clus
vv    ZNF429 MUTATED ZNF429 WILD-TYPE
  M0               8              181
  M1               0               31
  M1A              0                1
D389V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF429 MUTATED      9    0
  ZNF429 WILD-TYPE  207    8
     clus
vv    ZNF429 MUTATED ZNF429 WILD-TYPE
  NO               0                8
  YES              9              207

Clustering(390) Variable = OR10G9 MUTATION ANALYSIS
D390V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
[1] "hr=" "2.9"
D390V2, continuous
D390V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10G9 MUTATED      5    1
  OR10G9 WILD-TYPE  149   67
        clus
vv       OR10G9 MUTATED OR10G9 WILD-TYPE
  COLON               5              149
  RECTUM              1               67
D390V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10G9 MUTATED      1    5
  OR10G9 WILD-TYPE  116  102
        clus
vv       OR10G9 MUTATED OR10G9 WILD-TYPE
  FEMALE              5              102
  MALE                1              116
D390V5, multiclass
                                clus
vv                               OR10G9 MUTATED OR10G9 WILD-TYPE
  COLON ADENOCARCINOMA                        1              127
  COLON MUCINOUS ADENOCARCINOMA               4               20
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D390V6, multiclass
    clus
vv   OR10G9 MUTATED OR10G9 WILD-TYPE
  T1              1                8
  T2              1               46
  T3              3              147
  T4              1               16
D390V7, multiclass
    clus
vv   OR10G9 MUTATED OR10G9 WILD-TYPE
  N0              5              129
  N1              0               44
  N2              1               45
D390V8, multiclass
     clus
vv    OR10G9 MUTATED OR10G9 WILD-TYPE
  M0               6              183
  M1               0               31
  M1A              0                1
D390V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10G9 MUTATED      6    0
  OR10G9 WILD-TYPE  210    8
     clus
vv    OR10G9 MUTATED OR10G9 WILD-TYPE
  NO               0                8
  YES              6              210

Clustering(391) Variable = HYDIN MUTATION ANALYSIS
D391V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE"   "HYDIN MUTATED" "HYDIN WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE"   "HYDIN MUTATED" "HYDIN WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HYDIN WILD-TYPE"   "HYDIN MUTATED"   "HYDIN MUTATED" "HYDIN WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
  "HYDIN MUTATED" "HYDIN WILD-TYPE"   "HYDIN MUTATED"   "HYDIN MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE"   "HYDIN MUTATED" "HYDIN WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE"   "HYDIN MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE"   "HYDIN MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"HYDIN WILD-TYPE"   "HYDIN MUTATED" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "HYDIN MUTATED" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE"   "HYDIN MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"HYDIN WILD-TYPE"   "HYDIN MUTATED" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"HYDIN WILD-TYPE"   "HYDIN MUTATED" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE"   "HYDIN MUTATED" "HYDIN WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "HYDIN MUTATED" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE"   "HYDIN MUTATED" "HYDIN WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE"   "HYDIN MUTATED" "HYDIN WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HYDIN WILD-TYPE"   "HYDIN MUTATED"   "HYDIN MUTATED" "HYDIN WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
  "HYDIN MUTATED" "HYDIN WILD-TYPE"   "HYDIN MUTATED"   "HYDIN MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE"   "HYDIN MUTATED" "HYDIN WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE"   "HYDIN MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE"   "HYDIN MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"HYDIN WILD-TYPE"   "HYDIN MUTATED" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "HYDIN MUTATED" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE"   "HYDIN MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"HYDIN WILD-TYPE"   "HYDIN MUTATED" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"HYDIN WILD-TYPE"   "HYDIN MUTATED" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE"   "HYDIN MUTATED" "HYDIN WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "HYDIN MUTATED" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE"   "HYDIN MUTATED" "HYDIN WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE"   "HYDIN MUTATED" "HYDIN WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HYDIN WILD-TYPE"   "HYDIN MUTATED"   "HYDIN MUTATED" "HYDIN WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
  "HYDIN MUTATED" "HYDIN WILD-TYPE"   "HYDIN MUTATED"   "HYDIN MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE"   "HYDIN MUTATED" "HYDIN WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE"   "HYDIN MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE"   "HYDIN MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"HYDIN WILD-TYPE"   "HYDIN MUTATED" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "HYDIN MUTATED" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE"   "HYDIN MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"HYDIN WILD-TYPE"   "HYDIN MUTATED" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"HYDIN WILD-TYPE"   "HYDIN MUTATED" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE"   "HYDIN MUTATED" "HYDIN WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "HYDIN MUTATED" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" "HYDIN WILD-TYPE" 
[1] "hr=" "3.4"
D391V2, continuous
D391V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HYDIN MUTATED     19    6
  HYDIN WILD-TYPE  135   62
        clus
vv       HYDIN MUTATED HYDIN WILD-TYPE
  COLON             19             135
  RECTUM             6              62
D391V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HYDIN MUTATED     11   14
  HYDIN WILD-TYPE  106   93
        clus
vv       HYDIN MUTATED HYDIN WILD-TYPE
  FEMALE            14              93
  MALE              11             106
D391V5, multiclass
                                clus
vv                               HYDIN MUTATED HYDIN WILD-TYPE
  COLON ADENOCARCINOMA                      14             114
  COLON MUCINOUS ADENOCARCINOMA              5              19
  RECTAL ADENOCARCINOMA                      5              52
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D391V6, multiclass
    clus
vv   HYDIN MUTATED HYDIN WILD-TYPE
  T1             2               7
  T2             4              43
  T3            14             136
  T4             5              12
D391V7, multiclass
    clus
vv   HYDIN MUTATED HYDIN WILD-TYPE
  N0            20             114
  N1             3              41
  N2             2              44
D391V8, multiclass
     clus
vv    HYDIN MUTATED HYDIN WILD-TYPE
  M0             21             168
  M1              3              28
  M1A             0               1
D391V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HYDIN MUTATED     25    0
  HYDIN WILD-TYPE  191    8
     clus
vv    HYDIN MUTATED HYDIN WILD-TYPE
  NO              0               8
  YES            25             191

Clustering(392) Variable = AMPD1 MUTATION ANALYSIS
D392V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "AMPD1 MUTATED" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE"   "AMPD1 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"AMPD1 WILD-TYPE"   "AMPD1 MUTATED" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"AMPD1 WILD-TYPE"   "AMPD1 MUTATED" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "AMPD1 MUTATED" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "AMPD1 MUTATED" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE"   "AMPD1 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"AMPD1 WILD-TYPE"   "AMPD1 MUTATED" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"AMPD1 WILD-TYPE"   "AMPD1 MUTATED" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "AMPD1 MUTATED" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "AMPD1 MUTATED" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE"   "AMPD1 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"AMPD1 WILD-TYPE"   "AMPD1 MUTATED" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"AMPD1 WILD-TYPE"   "AMPD1 MUTATED" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "AMPD1 MUTATED" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" "AMPD1 WILD-TYPE" 
[1] "hr=" "2.1"
D392V2, continuous
D392V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  AMPD1 MUTATED      7    2
  AMPD1 WILD-TYPE  147   66
        clus
vv       AMPD1 MUTATED AMPD1 WILD-TYPE
  COLON              7             147
  RECTUM             2              66
D392V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  AMPD1 MUTATED      4    5
  AMPD1 WILD-TYPE  113  102
        clus
vv       AMPD1 MUTATED AMPD1 WILD-TYPE
  FEMALE             5             102
  MALE               4             113
D392V5, multiclass
                                clus
vv                               AMPD1 MUTATED AMPD1 WILD-TYPE
  COLON ADENOCARCINOMA                       5             123
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D392V6, multiclass
    clus
vv   AMPD1 MUTATED AMPD1 WILD-TYPE
  T1             1               8
  T2             2              45
  T3             4             146
  T4             1              16
D392V7, multiclass
    clus
vv   AMPD1 MUTATED AMPD1 WILD-TYPE
  N0             7             127
  N1             2              42
  N2             0              46
D392V8, multiclass
     clus
vv    AMPD1 MUTATED AMPD1 WILD-TYPE
  M0              9             180
  M1              0              31
  M1A             0               1
D392V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  AMPD1 MUTATED      8    1
  AMPD1 WILD-TYPE  208    7
     clus
vv    AMPD1 MUTATED AMPD1 WILD-TYPE
  NO              1               7
  YES             8             208

Clustering(393) Variable = PRG2 MUTATION ANALYSIS
D393V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE"   "PRG2 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "PRG2 MUTATED" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "PRG2 MUTATED" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE"   "PRG2 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "PRG2 MUTATED" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "PRG2 MUTATED" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE"   "PRG2 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "PRG2 MUTATED" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "PRG2 MUTATED" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" "PRG2 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D393V2, continuous
D393V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PRG2 MUTATED      3    2
  PRG2 WILD-TYPE  151   66
        clus
vv       PRG2 MUTATED PRG2 WILD-TYPE
  COLON             3            151
  RECTUM            2             66
D393V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PRG2 MUTATED      1    4
  PRG2 WILD-TYPE  116  103
        clus
vv       PRG2 MUTATED PRG2 WILD-TYPE
  FEMALE            4            103
  MALE              1            116
D393V5, multiclass
                                clus
vv                               PRG2 MUTATED PRG2 WILD-TYPE
  COLON ADENOCARCINOMA                      3            125
  COLON MUCINOUS ADENOCARCINOMA             0             24
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D393V6, multiclass
    clus
vv   PRG2 MUTATED PRG2 WILD-TYPE
  T1            0              9
  T2            2             45
  T3            2            148
  T4            1             16
D393V7, multiclass
    clus
vv   PRG2 MUTATED PRG2 WILD-TYPE
  N0            4            130
  N1            0             44
  N2            1             45
D393V8, multiclass
     clus
vv    PRG2 MUTATED PRG2 WILD-TYPE
  M0             5            184
  M1             0             31
  M1A            0              1
D393V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PRG2 MUTATED      5    0
  PRG2 WILD-TYPE  211    8
     clus
vv    PRG2 MUTATED PRG2 WILD-TYPE
  NO             0              8
  YES            5            211

Clustering(394) Variable = LRFN5 MUTATION ANALYSIS
D394V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE"   "LRFN5 MUTATED" "LRFN5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRFN5 WILD-TYPE"   "LRFN5 MUTATED" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LRFN5 MUTATED" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE"   "LRFN5 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LRFN5 WILD-TYPE"   "LRFN5 MUTATED" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LRFN5 WILD-TYPE"   "LRFN5 MUTATED" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE"   "LRFN5 MUTATED" "LRFN5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRFN5 WILD-TYPE"   "LRFN5 MUTATED" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LRFN5 MUTATED" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE"   "LRFN5 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LRFN5 WILD-TYPE"   "LRFN5 MUTATED" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LRFN5 WILD-TYPE"   "LRFN5 MUTATED" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE"   "LRFN5 MUTATED" "LRFN5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRFN5 WILD-TYPE"   "LRFN5 MUTATED" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LRFN5 MUTATED" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE"   "LRFN5 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LRFN5 WILD-TYPE"   "LRFN5 MUTATED" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LRFN5 WILD-TYPE"   "LRFN5 MUTATED" "LRFN5 WILD-TYPE" "LRFN5 WILD-TYPE" 
[1] "hr=" "2.3"
D394V2, continuous
D394V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRFN5 MUTATED      6    2
  LRFN5 WILD-TYPE  148   66
        clus
vv       LRFN5 MUTATED LRFN5 WILD-TYPE
  COLON              6             148
  RECTUM             2              66
D394V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRFN5 MUTATED      3    5
  LRFN5 WILD-TYPE  114  102
        clus
vv       LRFN5 MUTATED LRFN5 WILD-TYPE
  FEMALE             5             102
  MALE               3             114
D394V5, multiclass
                                clus
vv                               LRFN5 MUTATED LRFN5 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D394V6, multiclass
    clus
vv   LRFN5 MUTATED LRFN5 WILD-TYPE
  T1             1               8
  T2             1              46
  T3             3             147
  T4             3              14
D394V7, multiclass
    clus
vv   LRFN5 MUTATED LRFN5 WILD-TYPE
  N0             6             128
  N1             1              43
  N2             1              45
D394V8, multiclass
     clus
vv    LRFN5 MUTATED LRFN5 WILD-TYPE
  M0              8             181
  M1              0              31
  M1A             0               1
D394V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRFN5 MUTATED      8    0
  LRFN5 WILD-TYPE  208    8
     clus
vv    LRFN5 MUTATED LRFN5 WILD-TYPE
  NO              0               8
  YES             8             208

Clustering(395) Variable = CNTNAP2 MUTATION ANALYSIS
D395V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE"   "CNTNAP2 MUTATED" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CNTNAP2 WILD-TYPE"   "CNTNAP2 MUTATED" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CNTNAP2 WILD-TYPE"   "CNTNAP2 MUTATED" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE"   "CNTNAP2 MUTATED" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CNTNAP2 WILD-TYPE"   "CNTNAP2 MUTATED" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "CNTNAP2 MUTATED"   "CNTNAP2 MUTATED" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE"   "CNTNAP2 MUTATED" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CNTNAP2 WILD-TYPE"   "CNTNAP2 MUTATED" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CNTNAP2 WILD-TYPE"   "CNTNAP2 MUTATED" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE"   "CNTNAP2 MUTATED" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CNTNAP2 WILD-TYPE"   "CNTNAP2 MUTATED" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "CNTNAP2 MUTATED"   "CNTNAP2 MUTATED" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE"   "CNTNAP2 MUTATED" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CNTNAP2 WILD-TYPE"   "CNTNAP2 MUTATED" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CNTNAP2 WILD-TYPE"   "CNTNAP2 MUTATED" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE"   "CNTNAP2 MUTATED" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CNTNAP2 WILD-TYPE"   "CNTNAP2 MUTATED" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "CNTNAP2 MUTATED"   "CNTNAP2 MUTATED" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" "CNTNAP2 WILD-TYPE" 
[1] "hr="     "7.5e+07"
D395V2, continuous
D395V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CNTNAP2 MUTATED      8    4
  CNTNAP2 WILD-TYPE  146   64
        clus
vv       CNTNAP2 MUTATED CNTNAP2 WILD-TYPE
  COLON                8               146
  RECTUM               4                64
D395V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CNTNAP2 MUTATED      7    5
  CNTNAP2 WILD-TYPE  110  102
        clus
vv       CNTNAP2 MUTATED CNTNAP2 WILD-TYPE
  FEMALE               5               102
  MALE                 7               110
D395V5, multiclass
                                clus
vv                               CNTNAP2 MUTATED CNTNAP2 WILD-TYPE
  COLON ADENOCARCINOMA                         4               124
  COLON MUCINOUS ADENOCARCINOMA                3                21
  RECTAL ADENOCARCINOMA                        3                54
  RECTAL MUCINOUS ADENOCARCINOMA               1                 7
D395V6, multiclass
    clus
vv   CNTNAP2 MUTATED CNTNAP2 WILD-TYPE
  T1               0                 9
  T2               4                43
  T3               7               143
  T4               1                16
D395V7, multiclass
    clus
vv   CNTNAP2 MUTATED CNTNAP2 WILD-TYPE
  N0               7               127
  N1               4                40
  N2               1                45
D395V8, multiclass
     clus
vv    CNTNAP2 MUTATED CNTNAP2 WILD-TYPE
  M0               10               179
  M1                2                29
  M1A               0                 1
D395V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CNTNAP2 MUTATED     12    0
  CNTNAP2 WILD-TYPE  204    8
     clus
vv    CNTNAP2 MUTATED CNTNAP2 WILD-TYPE
  NO                0                 8
  YES              12               204

Clustering(396) Variable = SLC8A1 MUTATION ANALYSIS
D396V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SLC8A1 WILD-TYPE"   "SLC8A1 MUTATED"   "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE"   "SLC8A1 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE"   "SLC8A1 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SLC8A1 WILD-TYPE"   "SLC8A1 MUTATED"   "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE"   "SLC8A1 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE"   "SLC8A1 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SLC8A1 WILD-TYPE"   "SLC8A1 MUTATED"   "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE"   "SLC8A1 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE"   "SLC8A1 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D396V2, continuous
D396V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLC8A1 MUTATED     11    2
  SLC8A1 WILD-TYPE  143   66
        clus
vv       SLC8A1 MUTATED SLC8A1 WILD-TYPE
  COLON              11              143
  RECTUM              2               66
D396V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLC8A1 MUTATED      5    8
  SLC8A1 WILD-TYPE  112   99
        clus
vv       SLC8A1 MUTATED SLC8A1 WILD-TYPE
  FEMALE              8               99
  MALE                5              112
D396V5, multiclass
                                clus
vv                               SLC8A1 MUTATED SLC8A1 WILD-TYPE
  COLON ADENOCARCINOMA                        8              120
  COLON MUCINOUS ADENOCARCINOMA               3               21
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D396V6, multiclass
    clus
vv   SLC8A1 MUTATED SLC8A1 WILD-TYPE
  T1              1                8
  T2              3               44
  T3              8              142
  T4              1               16
D396V7, multiclass
    clus
vv   SLC8A1 MUTATED SLC8A1 WILD-TYPE
  N0             11              123
  N1              2               42
  N2              0               46
D396V8, multiclass
     clus
vv    SLC8A1 MUTATED SLC8A1 WILD-TYPE
  M0              12              177
  M1               0               31
  M1A              0                1
D396V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLC8A1 MUTATED     13    0
  SLC8A1 WILD-TYPE  203    8
     clus
vv    SLC8A1 MUTATED SLC8A1 WILD-TYPE
  NO               0                8
  YES             13              203

Clustering(397) Variable = AKR1C2 MUTATION ANALYSIS
D397V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
  "AKR1C2 MUTATED" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"AKR1C2 WILD-TYPE"   "AKR1C2 MUTATED" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"AKR1C2 WILD-TYPE"   "AKR1C2 MUTATED" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
  "AKR1C2 MUTATED" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"AKR1C2 WILD-TYPE"   "AKR1C2 MUTATED" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"AKR1C2 WILD-TYPE"   "AKR1C2 MUTATED" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
  "AKR1C2 MUTATED" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"AKR1C2 WILD-TYPE"   "AKR1C2 MUTATED" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"AKR1C2 WILD-TYPE"   "AKR1C2 MUTATED" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" "AKR1C2 WILD-TYPE" 
[1] "hr=" "5.7"
D397V2, continuous
D397V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  AKR1C2 MUTATED      3    1
  AKR1C2 WILD-TYPE  151   67
        clus
vv       AKR1C2 MUTATED AKR1C2 WILD-TYPE
  COLON               3              151
  RECTUM              1               67
D397V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  AKR1C2 MUTATED      0    4
  AKR1C2 WILD-TYPE  117  103
        clus
vv       AKR1C2 MUTATED AKR1C2 WILD-TYPE
  FEMALE              4              103
  MALE                0              117
D397V5, multiclass
                                clus
vv                               AKR1C2 MUTATED AKR1C2 WILD-TYPE
  COLON ADENOCARCINOMA                        3              125
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D397V6, multiclass
    clus
vv   AKR1C2 MUTATED AKR1C2 WILD-TYPE
  T1              1                8
  T2              1               46
  T3              2              148
  T4              0               17
D397V7, multiclass
    clus
vv   AKR1C2 MUTATED AKR1C2 WILD-TYPE
  N0              3              131
  N1              0               44
  N2              1               45
D397V8, multiclass
     clus
vv    AKR1C2 MUTATED AKR1C2 WILD-TYPE
  M0               4              185
  M1               0               31
  M1A              0                1
D397V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  AKR1C2 MUTATED      3    1
  AKR1C2 WILD-TYPE  213    7
     clus
vv    AKR1C2 MUTATED AKR1C2 WILD-TYPE
  NO               1                7
  YES              3              213

Clustering(398) Variable = FSTL1 MUTATION ANALYSIS
D398V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
  "FSTL1 MUTATED" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FSTL1 WILD-TYPE"   "FSTL1 MUTATED" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FSTL1 MUTATED" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
  "FSTL1 MUTATED" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FSTL1 WILD-TYPE"   "FSTL1 MUTATED" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FSTL1 MUTATED" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
  "FSTL1 MUTATED" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FSTL1 WILD-TYPE"   "FSTL1 MUTATED" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FSTL1 MUTATED" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
[1] "hr="     "9200000"
D398V2, continuous
D398V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FSTL1 MUTATED      5    1
  FSTL1 WILD-TYPE  149   67
        clus
vv       FSTL1 MUTATED FSTL1 WILD-TYPE
  COLON              5             149
  RECTUM             1              67
D398V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FSTL1 MUTATED      2    4
  FSTL1 WILD-TYPE  115  103
        clus
vv       FSTL1 MUTATED FSTL1 WILD-TYPE
  FEMALE             4             103
  MALE               2             115
D398V5, multiclass
                                clus
vv                               FSTL1 MUTATED FSTL1 WILD-TYPE
  COLON ADENOCARCINOMA                       3             125
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      0              57
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D398V6, multiclass
    clus
vv   FSTL1 MUTATED FSTL1 WILD-TYPE
  T1             0               9
  T2             0              47
  T3             5             145
  T4             1              16
D398V7, multiclass
    clus
vv   FSTL1 MUTATED FSTL1 WILD-TYPE
  N0             4             130
  N1             2              42
  N2             0              46
D398V8, multiclass
     clus
vv    FSTL1 MUTATED FSTL1 WILD-TYPE
  M0              6             183
  M1              0              31
  M1A             0               1
D398V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FSTL1 MUTATED      6    0
  FSTL1 WILD-TYPE  210    8
     clus
vv    FSTL1 MUTATED FSTL1 WILD-TYPE
  NO              0               8
  YES             6             210

Clustering(399) Variable = MGAT4C MUTATION ANALYSIS
D399V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "MGAT4C MUTATED" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE"   "MGAT4C MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MGAT4C WILD-TYPE"   "MGAT4C MUTATED" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "MGAT4C MUTATED" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"MGAT4C WILD-TYPE"   "MGAT4C MUTATED" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "MGAT4C MUTATED" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "MGAT4C MUTATED" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE"   "MGAT4C MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MGAT4C WILD-TYPE"   "MGAT4C MUTATED" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "MGAT4C MUTATED" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"MGAT4C WILD-TYPE"   "MGAT4C MUTATED" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "MGAT4C MUTATED" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "MGAT4C MUTATED" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE"   "MGAT4C MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MGAT4C WILD-TYPE"   "MGAT4C MUTATED" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "MGAT4C MUTATED" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"MGAT4C WILD-TYPE"   "MGAT4C MUTATED" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "MGAT4C MUTATED" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
[1] "hr=" "2.1"
D399V2, continuous
D399V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MGAT4C MUTATED      5    2
  MGAT4C WILD-TYPE  149   66
        clus
vv       MGAT4C MUTATED MGAT4C WILD-TYPE
  COLON               5              149
  RECTUM              2               66
D399V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MGAT4C MUTATED      3    4
  MGAT4C WILD-TYPE  114  103
        clus
vv       MGAT4C MUTATED MGAT4C WILD-TYPE
  FEMALE              4              103
  MALE                3              114
D399V5, multiclass
                                clus
vv                               MGAT4C MUTATED MGAT4C WILD-TYPE
  COLON ADENOCARCINOMA                        3              125
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D399V6, multiclass
    clus
vv   MGAT4C MUTATED MGAT4C WILD-TYPE
  T1              1                8
  T2              2               45
  T3              2              148
  T4              2               15
D399V7, multiclass
    clus
vv   MGAT4C MUTATED MGAT4C WILD-TYPE
  N0              7              127
  N1              0               44
  N2              0               46
D399V8, multiclass
     clus
vv    MGAT4C MUTATED MGAT4C WILD-TYPE
  M0               6              183
  M1               0               31
  M1A              0                1
D399V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MGAT4C MUTATED      7    0
  MGAT4C WILD-TYPE  209    8
     clus
vv    MGAT4C MUTATED MGAT4C WILD-TYPE
  NO               0                8
  YES              7              209

Clustering(400) Variable = VILL MUTATION ANALYSIS
D400V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "VILL MUTATED"   "VILL MUTATED" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"VILL WILD-TYPE"   "VILL MUTATED" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "VILL MUTATED"   "VILL MUTATED" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"VILL WILD-TYPE"   "VILL MUTATED" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "VILL MUTATED"   "VILL MUTATED" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"VILL WILD-TYPE"   "VILL MUTATED" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" "VILL WILD-TYPE" 
[1] "hr="     "9200000"
D400V2, continuous
D400V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  VILL MUTATED      4    1
  VILL WILD-TYPE  150   67
        clus
vv       VILL MUTATED VILL WILD-TYPE
  COLON             4            150
  RECTUM            1             67
D400V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  VILL MUTATED      2    3
  VILL WILD-TYPE  115  104
        clus
vv       VILL MUTATED VILL WILD-TYPE
  FEMALE            3            104
  MALE              2            115
D400V5, multiclass
                                clus
vv                               VILL MUTATED VILL WILD-TYPE
  COLON ADENOCARCINOMA                      3            125
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D400V6, multiclass
    clus
vv   VILL MUTATED VILL WILD-TYPE
  T1            0              9
  T2            1             46
  T3            3            147
  T4            1             16
D400V7, multiclass
    clus
vv   VILL MUTATED VILL WILD-TYPE
  N0            4            130
  N1            0             44
  N2            1             45
D400V8, multiclass
     clus
vv    VILL MUTATED VILL WILD-TYPE
  M0             5            184
  M1             0             31
  M1A            0              1
D400V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  VILL MUTATED      5    0
  VILL WILD-TYPE  211    8
     clus
vv    VILL MUTATED VILL WILD-TYPE
  NO             0              8
  YES            5            211

Clustering(401) Variable = SYT14 MUTATION ANALYSIS
D401V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE"   "SYT14 MUTATED" "SYT14 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE"   "SYT14 MUTATED" "SYT14 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SYT14 MUTATED" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE"   "SYT14 MUTATED" "SYT14 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE"   "SYT14 MUTATED" "SYT14 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SYT14 MUTATED" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE"   "SYT14 MUTATED" "SYT14 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE"   "SYT14 MUTATED" "SYT14 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SYT14 MUTATED" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" "SYT14 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D401V2, continuous
D401V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SYT14 MUTATED      5    1
  SYT14 WILD-TYPE  149   67
        clus
vv       SYT14 MUTATED SYT14 WILD-TYPE
  COLON              5             149
  RECTUM             1              67
D401V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SYT14 MUTATED      3    3
  SYT14 WILD-TYPE  114  104
        clus
vv       SYT14 MUTATED SYT14 WILD-TYPE
  FEMALE             3             104
  MALE               3             114
D401V5, multiclass
                                clus
vv                               SYT14 MUTATED SYT14 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D401V6, multiclass
    clus
vv   SYT14 MUTATED SYT14 WILD-TYPE
  T1             0               9
  T2             2              45
  T3             3             147
  T4             1              16
D401V7, multiclass
    clus
vv   SYT14 MUTATED SYT14 WILD-TYPE
  N0             5             129
  N1             1              43
  N2             0              46
D401V8, multiclass
     clus
vv    SYT14 MUTATED SYT14 WILD-TYPE
  M0              6             183
  M1              0              31
  M1A             0               1
D401V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SYT14 MUTATED      6    0
  SYT14 WILD-TYPE  210    8
     clus
vv    SYT14 MUTATED SYT14 WILD-TYPE
  NO              0               8
  YES             6             210

Clustering(402) Variable = ELAVL2 MUTATION ANALYSIS
D402V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE"   "ELAVL2 MUTATED"   "ELAVL2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE"   "ELAVL2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ELAVL2 MUTATED" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE"   "ELAVL2 MUTATED"   "ELAVL2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE"   "ELAVL2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ELAVL2 MUTATED" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE"   "ELAVL2 MUTATED"   "ELAVL2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE"   "ELAVL2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ELAVL2 MUTATED" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
[1] "hr="     "9200000"
D402V2, continuous
D402V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ELAVL2 MUTATED      5    2
  ELAVL2 WILD-TYPE  149   66
        clus
vv       ELAVL2 MUTATED ELAVL2 WILD-TYPE
  COLON               5              149
  RECTUM              2               66
D402V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ELAVL2 MUTATED      4    3
  ELAVL2 WILD-TYPE  113  104
        clus
vv       ELAVL2 MUTATED ELAVL2 WILD-TYPE
  FEMALE              3              104
  MALE                4              113
D402V5, multiclass
                                clus
vv                               ELAVL2 MUTATED ELAVL2 WILD-TYPE
  COLON ADENOCARCINOMA                        3              125
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D402V6, multiclass
    clus
vv   ELAVL2 MUTATED ELAVL2 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              5              145
  T4              0               17
D402V7, multiclass
    clus
vv   ELAVL2 MUTATED ELAVL2 WILD-TYPE
  N0              5              129
  N1              0               44
  N2              2               44
D402V8, multiclass
     clus
vv    ELAVL2 MUTATED ELAVL2 WILD-TYPE
  M0               6              183
  M1               0               31
  M1A              0                1
D402V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ELAVL2 MUTATED      7    0
  ELAVL2 WILD-TYPE  209    8
     clus
vv    ELAVL2 MUTATED ELAVL2 WILD-TYPE
  NO               0                8
  YES              7              209

Clustering(403) Variable = ZFP28 MUTATION ANALYSIS
D403V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "ZFP28 MUTATED" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZFP28 WILD-TYPE"   "ZFP28 MUTATED" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ZFP28 MUTATED" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ZFP28 MUTATED" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "ZFP28 MUTATED" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZFP28 WILD-TYPE"   "ZFP28 MUTATED" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ZFP28 MUTATED" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ZFP28 MUTATED" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "ZFP28 MUTATED" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZFP28 WILD-TYPE"   "ZFP28 MUTATED" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ZFP28 MUTATED" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ZFP28 MUTATED" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" "ZFP28 WILD-TYPE" 
[1] "hr=" "2.5"
D403V2, continuous
D403V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZFP28 MUTATED      5    3
  ZFP28 WILD-TYPE  149   65
        clus
vv       ZFP28 MUTATED ZFP28 WILD-TYPE
  COLON              5             149
  RECTUM             3              65
D403V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZFP28 MUTATED      4    4
  ZFP28 WILD-TYPE  113  103
        clus
vv       ZFP28 MUTATED ZFP28 WILD-TYPE
  FEMALE             4             103
  MALE               4             113
D403V5, multiclass
                                clus
vv                               ZFP28 MUTATED ZFP28 WILD-TYPE
  COLON ADENOCARCINOMA                       3             125
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D403V6, multiclass
    clus
vv   ZFP28 MUTATED ZFP28 WILD-TYPE
  T1             0               9
  T2             2              45
  T3             4             146
  T4             2              15
D403V7, multiclass
    clus
vv   ZFP28 MUTATED ZFP28 WILD-TYPE
  N0             7             127
  N1             1              43
  N2             0              46
D403V8, multiclass
     clus
vv    ZFP28 MUTATED ZFP28 WILD-TYPE
  M0              8             181
  M1              0              31
  M1A             0               1
D403V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZFP28 MUTATED      8    0
  ZFP28 WILD-TYPE  208    8
     clus
vv    ZFP28 MUTATED ZFP28 WILD-TYPE
  NO              0               8
  YES             8             208

Clustering(404) Variable = ZNF350 MUTATION ANALYSIS
D404V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE"   "ZNF350 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE"   "ZNF350 MUTATED" "ZNF350 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF350 MUTATED" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF350 MUTATED" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE"   "ZNF350 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE"   "ZNF350 MUTATED" "ZNF350 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF350 MUTATED" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF350 MUTATED" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE"   "ZNF350 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE"   "ZNF350 MUTATED" "ZNF350 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF350 MUTATED" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF350 MUTATED" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" "ZNF350 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D404V2, continuous
D404V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF350 MUTATED      6    1
  ZNF350 WILD-TYPE  148   67
        clus
vv       ZNF350 MUTATED ZNF350 WILD-TYPE
  COLON               6              148
  RECTUM              1               67
D404V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF350 MUTATED      4    3
  ZNF350 WILD-TYPE  113  104
        clus
vv       ZNF350 MUTATED ZNF350 WILD-TYPE
  FEMALE              3              104
  MALE                4              113
D404V5, multiclass
                                clus
vv                               ZNF350 MUTATED ZNF350 WILD-TYPE
  COLON ADENOCARCINOMA                        5              123
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D404V6, multiclass
    clus
vv   ZNF350 MUTATED ZNF350 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              3              147
  T4              2               15
D404V7, multiclass
    clus
vv   ZNF350 MUTATED ZNF350 WILD-TYPE
  N0              4              130
  N1              2               42
  N2              1               45
D404V8, multiclass
     clus
vv    ZNF350 MUTATED ZNF350 WILD-TYPE
  M0               6              183
  M1               0               31
  M1A              0                1
D404V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF350 MUTATED      7    0
  ZNF350 WILD-TYPE  209    8
     clus
vv    ZNF350 MUTATED ZNF350 WILD-TYPE
  NO               0                8
  YES              7              209

Clustering(405) Variable = TMBIM4 MUTATION ANALYSIS
D405V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE"   "TMBIM4 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE"   "TMBIM4 MUTATED" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE"   "TMBIM4 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE"   "TMBIM4 MUTATED" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE"   "TMBIM4 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE"   "TMBIM4 MUTATED" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
[1] "Remove cluster labels:" "TMBIM4 MUTATED"        
clus
  TMBIM4 MUTATED TMBIM4 WILD-TYPE 
               2              118 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3986 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P       TCGA-AA-A01Q 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T       TCGA-AA-A01V 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024       TCGA-AA-A029 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02O 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F       TCGA-AA-A03J 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689       TCGA-AF-2691 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00Y       TCGA-AG-A011 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A025 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N       TCGA-AG-A02X 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A032       TCGA-AG-A036 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
D405V2, continuous
D405V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TMBIM4 MUTATED      3    1
  TMBIM4 WILD-TYPE  151   67
        clus
vv       TMBIM4 MUTATED TMBIM4 WILD-TYPE
  COLON               3              151
  RECTUM              1               67
D405V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TMBIM4 MUTATED      3    1
  TMBIM4 WILD-TYPE  114  106
        clus
vv       TMBIM4 MUTATED TMBIM4 WILD-TYPE
  FEMALE              1              106
  MALE                3              114
D405V5, multiclass
                                clus
vv                               TMBIM4 MUTATED TMBIM4 WILD-TYPE
  COLON ADENOCARCINOMA                        3              125
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D405V6, multiclass
    clus
vv   TMBIM4 MUTATED TMBIM4 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              1              149
  T4              1               16
D405V7, multiclass
    clus
vv   TMBIM4 MUTATED TMBIM4 WILD-TYPE
  N0              3              131
  N1              1               43
  N2              0               46
D405V8, multiclass
     clus
vv    TMBIM4 MUTATED TMBIM4 WILD-TYPE
  M0               2              187
  M1               1               30
  M1A              0                1
D405V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TMBIM4 MUTATED      4    0
  TMBIM4 WILD-TYPE  212    8
     clus
vv    TMBIM4 MUTATED TMBIM4 WILD-TYPE
  NO               0                8
  YES              4              212

Clustering(406) Variable = RSPO2 MUTATION ANALYSIS
D406V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE"   "RSPO2 MUTATED" "RSPO2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RSPO2 MUTATED" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE"   "RSPO2 MUTATED" "RSPO2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE"   "RSPO2 MUTATED" "RSPO2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RSPO2 MUTATED" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE"   "RSPO2 MUTATED" "RSPO2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE"   "RSPO2 MUTATED" "RSPO2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RSPO2 MUTATED" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE"   "RSPO2 MUTATED" "RSPO2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
[1] "hr=" "4.6"
D406V2, continuous
D406V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RSPO2 MUTATED      4    2
  RSPO2 WILD-TYPE  150   66
        clus
vv       RSPO2 MUTATED RSPO2 WILD-TYPE
  COLON              4             150
  RECTUM             2              66
D406V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RSPO2 MUTATED      2    4
  RSPO2 WILD-TYPE  115  103
        clus
vv       RSPO2 MUTATED RSPO2 WILD-TYPE
  FEMALE             4             103
  MALE               2             115
D406V5, multiclass
                                clus
vv                               RSPO2 MUTATED RSPO2 WILD-TYPE
  COLON ADENOCARCINOMA                       3             125
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D406V6, multiclass
    clus
vv   RSPO2 MUTATED RSPO2 WILD-TYPE
  T1             0               9
  T2             2              45
  T3             1             149
  T4             3              14
D406V7, multiclass
    clus
vv   RSPO2 MUTATED RSPO2 WILD-TYPE
  N0             6             128
  N1             0              44
  N2             0              46
D406V8, multiclass
     clus
vv    RSPO2 MUTATED RSPO2 WILD-TYPE
  M0              6             183
  M1              0              31
  M1A             0               1
D406V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RSPO2 MUTATED      6    0
  RSPO2 WILD-TYPE  210    8
     clus
vv    RSPO2 MUTATED RSPO2 WILD-TYPE
  NO              0               8
  YES             6             210

Clustering(407) Variable = AURKC MUTATION ANALYSIS
D407V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE"   "AURKC MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "AURKC MUTATED" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "AURKC MUTATED" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"AURKC WILD-TYPE"   "AURKC MUTATED" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE"   "AURKC MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "AURKC MUTATED" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "AURKC MUTATED" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"AURKC WILD-TYPE"   "AURKC MUTATED" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE"   "AURKC MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "AURKC MUTATED" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "AURKC MUTATED" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"AURKC WILD-TYPE"   "AURKC MUTATED" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
[1] "hr="     "2.6e+07"
D407V2, continuous
D407V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  AURKC MUTATED      5    2
  AURKC WILD-TYPE  149   66
        clus
vv       AURKC MUTATED AURKC WILD-TYPE
  COLON              5             149
  RECTUM             2              66
D407V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  AURKC MUTATED      5    2
  AURKC WILD-TYPE  112  105
        clus
vv       AURKC MUTATED AURKC WILD-TYPE
  FEMALE             2             105
  MALE               5             112
D407V5, multiclass
                                clus
vv                               AURKC MUTATED AURKC WILD-TYPE
  COLON ADENOCARCINOMA                       5             123
  COLON MUCINOUS ADENOCARCINOMA              0              24
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D407V6, multiclass
    clus
vv   AURKC MUTATED AURKC WILD-TYPE
  T1             0               9
  T2             2              45
  T3             5             145
  T4             0              17
D407V7, multiclass
    clus
vv   AURKC MUTATED AURKC WILD-TYPE
  N0             6             128
  N1             1              43
  N2             0              46
D407V8, multiclass
     clus
vv    AURKC MUTATED AURKC WILD-TYPE
  M0              6             183
  M1              0              31
  M1A             0               1
D407V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  AURKC MUTATED      7    0
  AURKC WILD-TYPE  209    8
     clus
vv    AURKC MUTATED AURKC WILD-TYPE
  NO              0               8
  YES             7             209

Clustering(408) Variable = GFRA1 MUTATION ANALYSIS
D408V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE"   "GFRA1 MUTATED" "GFRA1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE"   "GFRA1 MUTATED" "GFRA1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GFRA1 WILD-TYPE"   "GFRA1 MUTATED" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "GFRA1 MUTATED"   "GFRA1 MUTATED" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE"   "GFRA1 MUTATED" "GFRA1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE"   "GFRA1 MUTATED" "GFRA1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE"   "GFRA1 MUTATED" "GFRA1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GFRA1 WILD-TYPE"   "GFRA1 MUTATED" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "GFRA1 MUTATED"   "GFRA1 MUTATED" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE"   "GFRA1 MUTATED" "GFRA1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE"   "GFRA1 MUTATED" "GFRA1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE"   "GFRA1 MUTATED" "GFRA1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GFRA1 WILD-TYPE"   "GFRA1 MUTATED" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "GFRA1 MUTATED"   "GFRA1 MUTATED" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE"   "GFRA1 MUTATED" "GFRA1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D408V2, continuous
D408V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GFRA1 MUTATED      3    5
  GFRA1 WILD-TYPE  151   63
        clus
vv       GFRA1 MUTATED GFRA1 WILD-TYPE
  COLON              3             151
  RECTUM             5              63
D408V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GFRA1 MUTATED      2    6
  GFRA1 WILD-TYPE  115  101
        clus
vv       GFRA1 MUTATED GFRA1 WILD-TYPE
  FEMALE             6             101
  MALE               2             115
D408V5, multiclass
                                clus
vv                               GFRA1 MUTATED GFRA1 WILD-TYPE
  COLON ADENOCARCINOMA                       2             126
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             2               6
D408V6, multiclass
    clus
vv   GFRA1 MUTATED GFRA1 WILD-TYPE
  T1             1               8
  T2             3              44
  T3             3             147
  T4             1              16
D408V7, multiclass
    clus
vv   GFRA1 MUTATED GFRA1 WILD-TYPE
  N0             7             127
  N1             1              43
  N2             0              46
D408V8, multiclass
     clus
vv    GFRA1 MUTATED GFRA1 WILD-TYPE
  M0              8             181
  M1              0              31
  M1A             0               1
D408V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GFRA1 MUTATED      8    0
  GFRA1 WILD-TYPE  208    8
     clus
vv    GFRA1 MUTATED GFRA1 WILD-TYPE
  NO              0               8
  YES             8             208

Clustering(409) Variable = OR5B21 MUTATION ANALYSIS
D409V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE"   "OR5B21 MUTATED" "OR5B21 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "OR5B21 MUTATED" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE"   "OR5B21 MUTATED" "OR5B21 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "OR5B21 MUTATED" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE"   "OR5B21 MUTATED" "OR5B21 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "OR5B21 MUTATED" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
[1] "Remove cluster labels:" "OR5B21 MUTATED"        
clus
  OR5B21 MUTATED OR5B21 WILD-TYPE 
               2              118 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00K       TCGA-AA-A00L 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P       TCGA-AA-A01Q 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T       TCGA-AA-A01V 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024       TCGA-AA-A029 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02O 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F       TCGA-AA-A03J 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689       TCGA-AF-2691 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A008 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A025 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N       TCGA-AG-A02X 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
      TCGA-AG-A032       TCGA-AG-A036 
"OR5B21 WILD-TYPE" "OR5B21 WILD-TYPE" 
D409V2, continuous
D409V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5B21 MUTATED      2    2
  OR5B21 WILD-TYPE  152   66
        clus
vv       OR5B21 MUTATED OR5B21 WILD-TYPE
  COLON               2              152
  RECTUM              2               66
D409V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5B21 MUTATED      3    1
  OR5B21 WILD-TYPE  114  106
        clus
vv       OR5B21 MUTATED OR5B21 WILD-TYPE
  FEMALE              1              106
  MALE                3              114
D409V5, multiclass
                                clus
vv                               OR5B21 MUTATED OR5B21 WILD-TYPE
  COLON ADENOCARCINOMA                        1              127
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D409V6, multiclass
    clus
vv   OR5B21 MUTATED OR5B21 WILD-TYPE
  T1              0                9
  T2              1               46
  T3              2              148
  T4              1               16
D409V7, multiclass
    clus
vv   OR5B21 MUTATED OR5B21 WILD-TYPE
  N0              1              133
  N1              2               42
  N2              1               45
D409V8, multiclass
     clus
vv    OR5B21 MUTATED OR5B21 WILD-TYPE
  M0               3              186
  M1               1               30
  M1A              0                1
D409V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5B21 MUTATED      4    0
  OR5B21 WILD-TYPE  212    8
     clus
vv    OR5B21 MUTATED OR5B21 WILD-TYPE
  NO               0                8
  YES              4              212

Clustering(410) Variable = POU3F4 MUTATION ANALYSIS
D410V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE"   "POU3F4 MUTATED" "POU3F4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "POU3F4 MUTATED" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"POU3F4 WILD-TYPE"   "POU3F4 MUTATED" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"POU3F4 WILD-TYPE"   "POU3F4 MUTATED" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"POU3F4 WILD-TYPE"   "POU3F4 MUTATED" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE"   "POU3F4 MUTATED" "POU3F4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "POU3F4 MUTATED" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"POU3F4 WILD-TYPE"   "POU3F4 MUTATED" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"POU3F4 WILD-TYPE"   "POU3F4 MUTATED" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"POU3F4 WILD-TYPE"   "POU3F4 MUTATED" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE"   "POU3F4 MUTATED" "POU3F4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "POU3F4 MUTATED" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"POU3F4 WILD-TYPE"   "POU3F4 MUTATED" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"POU3F4 WILD-TYPE"   "POU3F4 MUTATED" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"POU3F4 WILD-TYPE"   "POU3F4 MUTATED" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" "POU3F4 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D410V2, continuous
D410V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  POU3F4 MUTATED      4    3
  POU3F4 WILD-TYPE  150   65
        clus
vv       POU3F4 MUTATED POU3F4 WILD-TYPE
  COLON               4              150
  RECTUM              3               65
D410V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  POU3F4 MUTATED      1    6
  POU3F4 WILD-TYPE  116  101
        clus
vv       POU3F4 MUTATED POU3F4 WILD-TYPE
  FEMALE              6              101
  MALE                1              116
D410V5, multiclass
                                clus
vv                               POU3F4 MUTATED POU3F4 WILD-TYPE
  COLON ADENOCARCINOMA                        3              125
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D410V6, multiclass
    clus
vv   POU3F4 MUTATED POU3F4 WILD-TYPE
  T1              1                8
  T2              1               46
  T3              3              147
  T4              2               15
D410V7, multiclass
    clus
vv   POU3F4 MUTATED POU3F4 WILD-TYPE
  N0              7              127
  N1              0               44
  N2              0               46
D410V8, multiclass
     clus
vv    POU3F4 MUTATED POU3F4 WILD-TYPE
  M0               7              182
  M1               0               31
  M1A              0                1
D410V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  POU3F4 MUTATED      7    0
  POU3F4 WILD-TYPE  209    8
     clus
vv    POU3F4 MUTATED POU3F4 WILD-TYPE
  NO               0                8
  YES              7              209

Clustering(411) Variable = PRDM2 MUTATION ANALYSIS
D411V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRDM2 WILD-TYPE"   "PRDM2 MUTATED" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRDM2 WILD-TYPE"   "PRDM2 MUTATED" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE"   "PRDM2 MUTATED" "PRDM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PRDM2 WILD-TYPE"   "PRDM2 MUTATED" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE"   "PRDM2 MUTATED"   "PRDM2 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PRDM2 WILD-TYPE"   "PRDM2 MUTATED" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PRDM2 WILD-TYPE"   "PRDM2 MUTATED" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PRDM2 MUTATED" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRDM2 WILD-TYPE"   "PRDM2 MUTATED" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRDM2 WILD-TYPE"   "PRDM2 MUTATED" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE"   "PRDM2 MUTATED" "PRDM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PRDM2 WILD-TYPE"   "PRDM2 MUTATED" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE"   "PRDM2 MUTATED"   "PRDM2 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PRDM2 WILD-TYPE"   "PRDM2 MUTATED" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PRDM2 WILD-TYPE"   "PRDM2 MUTATED" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PRDM2 MUTATED" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRDM2 WILD-TYPE"   "PRDM2 MUTATED" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRDM2 WILD-TYPE"   "PRDM2 MUTATED" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE"   "PRDM2 MUTATED" "PRDM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PRDM2 WILD-TYPE"   "PRDM2 MUTATED" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE"   "PRDM2 MUTATED"   "PRDM2 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PRDM2 WILD-TYPE"   "PRDM2 MUTATED" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PRDM2 WILD-TYPE"   "PRDM2 MUTATED" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PRDM2 MUTATED" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
[1] "hr="     "7.7e+07"
D411V2, continuous
D411V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRDM2 MUTATED     13    2
  PRDM2 WILD-TYPE  141   66
        clus
vv       PRDM2 MUTATED PRDM2 WILD-TYPE
  COLON             13             141
  RECTUM             2              66
D411V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRDM2 MUTATED      5   10
  PRDM2 WILD-TYPE  112   97
        clus
vv       PRDM2 MUTATED PRDM2 WILD-TYPE
  FEMALE            10              97
  MALE               5             112
D411V5, multiclass
                                clus
vv                               PRDM2 MUTATED PRDM2 WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              4              20
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D411V6, multiclass
    clus
vv   PRDM2 MUTATED PRDM2 WILD-TYPE
  T1             1               8
  T2             2              45
  T3            10             140
  T4             2              15
D411V7, multiclass
    clus
vv   PRDM2 MUTATED PRDM2 WILD-TYPE
  N0             9             125
  N1             4              40
  N2             2              44
D411V8, multiclass
     clus
vv    PRDM2 MUTATED PRDM2 WILD-TYPE
  M0             14             175
  M1              1              30
  M1A             0               1
D411V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRDM2 MUTATED     14    1
  PRDM2 WILD-TYPE  202    7
     clus
vv    PRDM2 MUTATED PRDM2 WILD-TYPE
  NO              1               7
  YES            14             202

Clustering(412) Variable = QRFPR MUTATION ANALYSIS
D412V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "QRFPR MUTATED" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE"   "QRFPR MUTATED" "QRFPR WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "QRFPR MUTATED" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"QRFPR WILD-TYPE"   "QRFPR MUTATED" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "QRFPR MUTATED" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE"   "QRFPR MUTATED" "QRFPR WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "QRFPR MUTATED" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"QRFPR WILD-TYPE"   "QRFPR MUTATED" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "QRFPR MUTATED" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE"   "QRFPR MUTATED" "QRFPR WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "QRFPR MUTATED" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"QRFPR WILD-TYPE"   "QRFPR MUTATED" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
[1] "hr="     "7.4e+07"
D412V2, continuous
D412V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  QRFPR MUTATED      4    3
  QRFPR WILD-TYPE  150   65
        clus
vv       QRFPR MUTATED QRFPR WILD-TYPE
  COLON              4             150
  RECTUM             3              65
D412V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  QRFPR MUTATED      4    3
  QRFPR WILD-TYPE  113  104
        clus
vv       QRFPR MUTATED QRFPR WILD-TYPE
  FEMALE             3             104
  MALE               4             113
D412V5, multiclass
                                clus
vv                               QRFPR MUTATED QRFPR WILD-TYPE
  COLON ADENOCARCINOMA                       3             125
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D412V6, multiclass
    clus
vv   QRFPR MUTATED QRFPR WILD-TYPE
  T1             0               9
  T2             3              44
  T3             3             147
  T4             1              16
D412V7, multiclass
    clus
vv   QRFPR MUTATED QRFPR WILD-TYPE
  N0             7             127
  N1             0              44
  N2             0              46
D412V8, multiclass
     clus
vv    QRFPR MUTATED QRFPR WILD-TYPE
  M0              7             182
  M1              0              31
  M1A             0               1
D412V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  QRFPR MUTATED      7    0
  QRFPR WILD-TYPE  209    8
     clus
vv    QRFPR MUTATED QRFPR WILD-TYPE
  NO              0               8
  YES             7             209

Clustering(413) Variable = STS MUTATION ANALYSIS
D413V1, survival
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE"   "STS MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"STS WILD-TYPE" "STS WILD-TYPE"   "STS MUTATED" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "STS MUTATED" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"STS WILD-TYPE"   "STS MUTATED" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE"   "STS MUTATED" "STS WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE"   "STS MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"STS WILD-TYPE" "STS WILD-TYPE"   "STS MUTATED" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "STS MUTATED" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"STS WILD-TYPE"   "STS MUTATED" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE"   "STS MUTATED" "STS WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE"   "STS MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"STS WILD-TYPE" "STS WILD-TYPE"   "STS MUTATED" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "STS MUTATED" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"STS WILD-TYPE"   "STS MUTATED" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE"   "STS MUTATED" "STS WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" "STS WILD-TYPE" 
[1] "hr=" "6.3"
D413V2, continuous
D413V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  STS MUTATED      6    1
  STS WILD-TYPE  148   67
        clus
vv       STS MUTATED STS WILD-TYPE
  COLON            6           148
  RECTUM           1            67
D413V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  STS MUTATED      3    4
  STS WILD-TYPE  114  103
        clus
vv       STS MUTATED STS WILD-TYPE
  FEMALE           4           103
  MALE             3           114
D413V5, multiclass
                                clus
vv                               STS MUTATED STS WILD-TYPE
  COLON ADENOCARCINOMA                     4           124
  COLON MUCINOUS ADENOCARCINOMA            2            22
  RECTAL ADENOCARCINOMA                    1            56
  RECTAL MUCINOUS ADENOCARCINOMA           0             8
D413V6, multiclass
    clus
vv   STS MUTATED STS WILD-TYPE
  T1           1             8
  T2           1            46
  T3           4           146
  T4           1            16
D413V7, multiclass
    clus
vv   STS MUTATED STS WILD-TYPE
  N0           4           130
  N1           1            43
  N2           2            44
D413V8, multiclass
     clus
vv    STS MUTATED STS WILD-TYPE
  M0            6           183
  M1            1            30
  M1A           0             1
D413V9, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  STS MUTATED      7    0
  STS WILD-TYPE  209    8
     clus
vv    STS MUTATED STS WILD-TYPE
  NO            0             8
  YES           7           209

Clustering(414) Variable = GPR87 MUTATION ANALYSIS
D414V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "GPR87 MUTATED" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE"   "GPR87 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE"   "GPR87 MUTATED" "GPR87 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GPR87 WILD-TYPE"   "GPR87 MUTATED" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "GPR87 MUTATED" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE"   "GPR87 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE"   "GPR87 MUTATED" "GPR87 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GPR87 WILD-TYPE"   "GPR87 MUTATED" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "GPR87 MUTATED" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE"   "GPR87 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE"   "GPR87 MUTATED" "GPR87 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GPR87 WILD-TYPE"   "GPR87 MUTATED" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" "GPR87 WILD-TYPE" 
[1] "hr="     "9300000"
D414V2, continuous
D414V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GPR87 MUTATED      4    1
  GPR87 WILD-TYPE  150   67
        clus
vv       GPR87 MUTATED GPR87 WILD-TYPE
  COLON              4             150
  RECTUM             1              67
D414V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GPR87 MUTATED      2    3
  GPR87 WILD-TYPE  115  104
        clus
vv       GPR87 MUTATED GPR87 WILD-TYPE
  FEMALE             3             104
  MALE               2             115
D414V5, multiclass
                                clus
vv                               GPR87 MUTATED GPR87 WILD-TYPE
  COLON ADENOCARCINOMA                       2             126
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D414V6, multiclass
    clus
vv   GPR87 MUTATED GPR87 WILD-TYPE
  T1             1               8
  T2             1              46
  T3             2             148
  T4             1              16
D414V7, multiclass
    clus
vv   GPR87 MUTATED GPR87 WILD-TYPE
  N0             4             130
  N1             0              44
  N2             1              45
D414V8, multiclass
     clus
vv    GPR87 MUTATED GPR87 WILD-TYPE
  M0              3             186
  M1              1              30
  M1A             0               1
D414V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GPR87 MUTATED      5    0
  GPR87 WILD-TYPE  211    8
     clus
vv    GPR87 MUTATED GPR87 WILD-TYPE
  NO              0               8
  YES             5             211

Clustering(415) Variable = MDGA2 MUTATION ANALYSIS
D415V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" "MDGA2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MDGA2 WILD-TYPE"   "MDGA2 MUTATED" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MDGA2 MUTATED" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" "MDGA2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" "MDGA2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MDGA2 WILD-TYPE"   "MDGA2 MUTATED" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MDGA2 MUTATED" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" "MDGA2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" "MDGA2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MDGA2 WILD-TYPE"   "MDGA2 MUTATED" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MDGA2 MUTATED" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" "MDGA2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
[1] "hr=" "1.4"
D415V2, continuous
D415V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MDGA2 MUTATED      8    2
  MDGA2 WILD-TYPE  146   66
        clus
vv       MDGA2 MUTATED MDGA2 WILD-TYPE
  COLON              8             146
  RECTUM             2              66
D415V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MDGA2 MUTATED      5    5
  MDGA2 WILD-TYPE  112  102
        clus
vv       MDGA2 MUTATED MDGA2 WILD-TYPE
  FEMALE             5             102
  MALE               5             112
D415V5, multiclass
                                clus
vv                               MDGA2 MUTATED MDGA2 WILD-TYPE
  COLON ADENOCARCINOMA                       5             123
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D415V6, multiclass
    clus
vv   MDGA2 MUTATED MDGA2 WILD-TYPE
  T1             0               9
  T2             2              45
  T3             6             144
  T4             2              15
D415V7, multiclass
    clus
vv   MDGA2 MUTATED MDGA2 WILD-TYPE
  N0             7             127
  N1             1              43
  N2             2              44
D415V8, multiclass
     clus
vv    MDGA2 MUTATED MDGA2 WILD-TYPE
  M0              8             181
  M1              1              30
  M1A             0               1
D415V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MDGA2 MUTATED     10    0
  MDGA2 WILD-TYPE  206    8
     clus
vv    MDGA2 MUTATED MDGA2 WILD-TYPE
  NO              0               8
  YES            10             206

Clustering(416) Variable = ADAM7 MUTATION ANALYSIS
D416V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "ADAM7 MUTATED" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE"   "ADAM7 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE"   "ADAM7 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ADAM7 WILD-TYPE"   "ADAM7 MUTATED" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ADAM7 MUTATED" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ADAM7 WILD-TYPE"   "ADAM7 MUTATED" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ADAM7 MUTATED" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "ADAM7 MUTATED" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE"   "ADAM7 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE"   "ADAM7 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ADAM7 WILD-TYPE"   "ADAM7 MUTATED" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ADAM7 MUTATED" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ADAM7 WILD-TYPE"   "ADAM7 MUTATED" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ADAM7 MUTATED" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "ADAM7 MUTATED" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE"   "ADAM7 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE"   "ADAM7 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ADAM7 WILD-TYPE"   "ADAM7 MUTATED" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ADAM7 MUTATED" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ADAM7 WILD-TYPE"   "ADAM7 MUTATED" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ADAM7 MUTATED" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
[1] "hr=" "1.6"
D416V2, continuous
D416V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ADAM7 MUTATED      9    1
  ADAM7 WILD-TYPE  145   67
        clus
vv       ADAM7 MUTATED ADAM7 WILD-TYPE
  COLON              9             145
  RECTUM             1              67
D416V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ADAM7 MUTATED      4    6
  ADAM7 WILD-TYPE  113  101
        clus
vv       ADAM7 MUTATED ADAM7 WILD-TYPE
  FEMALE             6             101
  MALE               4             113
D416V5, multiclass
                                clus
vv                               ADAM7 MUTATED ADAM7 WILD-TYPE
  COLON ADENOCARCINOMA                       5             123
  COLON MUCINOUS ADENOCARCINOMA              4              20
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D416V6, multiclass
    clus
vv   ADAM7 MUTATED ADAM7 WILD-TYPE
  T1             1               8
  T2             1              46
  T3             5             145
  T4             3              14
D416V7, multiclass
    clus
vv   ADAM7 MUTATED ADAM7 WILD-TYPE
  N0             7             127
  N1             1              43
  N2             2              44
D416V8, multiclass
     clus
vv    ADAM7 MUTATED ADAM7 WILD-TYPE
  M0              9             180
  M1              1              30
  M1A             0               1
D416V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ADAM7 MUTATED     10    0
  ADAM7 WILD-TYPE  206    8
     clus
vv    ADAM7 MUTATED ADAM7 WILD-TYPE
  NO              0               8
  YES            10             206

Clustering(417) Variable = C5ORF36 MUTATION ANALYSIS
D417V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"C5ORF36 WILD-TYPE"   "C5ORF36 MUTATED" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE"   "C5ORF36 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"C5ORF36 WILD-TYPE"   "C5ORF36 MUTATED" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"C5ORF36 WILD-TYPE"   "C5ORF36 MUTATED" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"C5ORF36 WILD-TYPE"   "C5ORF36 MUTATED" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE"   "C5ORF36 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"C5ORF36 WILD-TYPE"   "C5ORF36 MUTATED" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"C5ORF36 WILD-TYPE"   "C5ORF36 MUTATED" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"C5ORF36 WILD-TYPE"   "C5ORF36 MUTATED" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE"   "C5ORF36 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"C5ORF36 WILD-TYPE"   "C5ORF36 MUTATED" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"C5ORF36 WILD-TYPE"   "C5ORF36 MUTATED" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" "C5ORF36 WILD-TYPE" 
[1] "hr=" "4.1"
D417V2, continuous
D417V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C5ORF36 MUTATED      4    1
  C5ORF36 WILD-TYPE  150   67
        clus
vv       C5ORF36 MUTATED C5ORF36 WILD-TYPE
  COLON                4               150
  RECTUM               1                67
D417V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C5ORF36 MUTATED      2    3
  C5ORF36 WILD-TYPE  115  104
        clus
vv       C5ORF36 MUTATED C5ORF36 WILD-TYPE
  FEMALE               3               104
  MALE                 2               115
D417V5, multiclass
                                clus
vv                               C5ORF36 MUTATED C5ORF36 WILD-TYPE
  COLON ADENOCARCINOMA                         3               125
  COLON MUCINOUS ADENOCARCINOMA                1                23
  RECTAL ADENOCARCINOMA                        1                56
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D417V6, multiclass
    clus
vv   C5ORF36 MUTATED C5ORF36 WILD-TYPE
  T1               1                 8
  T2               1                46
  T3               2               148
  T4               1                16
D417V7, multiclass
    clus
vv   C5ORF36 MUTATED C5ORF36 WILD-TYPE
  N0               4               130
  N1               1                43
  N2               0                46
D417V8, multiclass
     clus
vv    C5ORF36 MUTATED C5ORF36 WILD-TYPE
  M0                4               185
  M1                0                31
  M1A               0                 1
D417V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C5ORF36 MUTATED      4    1
  C5ORF36 WILD-TYPE  212    7
     clus
vv    C5ORF36 MUTATED C5ORF36 WILD-TYPE
  NO                1                 7
  YES               4               212

Clustering(418) Variable = TSG101 MUTATION ANALYSIS
D418V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" "TSG101 WILD-TYPE" 
D418V2, continuous
D418V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TSG101 MUTATED      4    0
  TSG101 WILD-TYPE  150   68
        clus
vv       TSG101 MUTATED TSG101 WILD-TYPE
  COLON               4              150
  RECTUM              0               68
D418V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TSG101 MUTATED      3    1
  TSG101 WILD-TYPE  114  106
        clus
vv       TSG101 MUTATED TSG101 WILD-TYPE
  FEMALE              1              106
  MALE                3              114
D418V5, multiclass
                                clus
vv                               TSG101 MUTATED TSG101 WILD-TYPE
  COLON ADENOCARCINOMA                        3              125
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       0               57
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D418V6, multiclass
    clus
vv   TSG101 MUTATED TSG101 WILD-TYPE
  T1              0                9
  T2              1               46
  T3              3              147
  T4              0               17
D418V7, multiclass
    clus
vv   TSG101 MUTATED TSG101 WILD-TYPE
  N0              1              133
  N1              1               43
  N2              2               44
D418V8, multiclass
     clus
vv    TSG101 MUTATED TSG101 WILD-TYPE
  M0               2              187
  M1               2               29
  M1A              0                1
D418V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TSG101 MUTATED      4    0
  TSG101 WILD-TYPE  212    8
     clus
vv    TSG101 MUTATED TSG101 WILD-TYPE
  NO               0                8
  YES              4              212

Clustering(419) Variable = ARHGEF12 MUTATION ANALYSIS
D419V1, survival
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "ARHGEF12 MUTATED" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"ARHGEF12 WILD-TYPE"   "ARHGEF12 MUTATED" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"ARHGEF12 WILD-TYPE"   "ARHGEF12 MUTATED" "ARHGEF12 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "ARHGEF12 MUTATED" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"ARHGEF12 WILD-TYPE"   "ARHGEF12 MUTATED" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"ARHGEF12 WILD-TYPE"   "ARHGEF12 MUTATED" "ARHGEF12 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "ARHGEF12 MUTATED" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"ARHGEF12 WILD-TYPE"   "ARHGEF12 MUTATED" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"ARHGEF12 WILD-TYPE"   "ARHGEF12 MUTATED" "ARHGEF12 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" "ARHGEF12 WILD-TYPE" 
[1] "hr=" "2.6"
D419V2, continuous
D419V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ARHGEF12 MUTATED      4    1
  ARHGEF12 WILD-TYPE  150   67
        clus
vv       ARHGEF12 MUTATED ARHGEF12 WILD-TYPE
  COLON                 4                150
  RECTUM                1                 67
D419V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ARHGEF12 MUTATED      2    3
  ARHGEF12 WILD-TYPE  115  104
        clus
vv       ARHGEF12 MUTATED ARHGEF12 WILD-TYPE
  FEMALE                3                104
  MALE                  2                115
D419V5, multiclass
                                clus
vv                               ARHGEF12 MUTATED ARHGEF12 WILD-TYPE
  COLON ADENOCARCINOMA                          3                125
  COLON MUCINOUS ADENOCARCINOMA                 1                 23
  RECTAL ADENOCARCINOMA                         1                 56
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
D419V6, multiclass
    clus
vv   ARHGEF12 MUTATED ARHGEF12 WILD-TYPE
  T1                0                  9
  T2                1                 46
  T3                2                148
  T4                2                 15
D419V7, multiclass
    clus
vv   ARHGEF12 MUTATED ARHGEF12 WILD-TYPE
  N0                4                130
  N1                0                 44
  N2                1                 45
D419V8, multiclass
     clus
vv    ARHGEF12 MUTATED ARHGEF12 WILD-TYPE
  M0                 4                185
  M1                 1                 30
  M1A                0                  1
D419V9, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ARHGEF12 MUTATED      5    0
  ARHGEF12 WILD-TYPE  211    8
     clus
vv    ARHGEF12 MUTATED ARHGEF12 WILD-TYPE
  NO                 0                  8
  YES                5                211

Clustering(420) Variable = LRRC7 MUTATION ANALYSIS
D420V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE"   "LRRC7 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "LRRC7 MUTATED"   "LRRC7 MUTATED" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE"   "LRRC7 MUTATED" "LRRC7 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LRRC7 MUTATED" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
  "LRRC7 MUTATED" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LRRC7 WILD-TYPE"   "LRRC7 MUTATED" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LRRC7 MUTATED" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE"   "LRRC7 MUTATED" "LRRC7 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE"   "LRRC7 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "LRRC7 MUTATED"   "LRRC7 MUTATED" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE"   "LRRC7 MUTATED" "LRRC7 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LRRC7 MUTATED" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
  "LRRC7 MUTATED" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LRRC7 WILD-TYPE"   "LRRC7 MUTATED" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LRRC7 MUTATED" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE"   "LRRC7 MUTATED" "LRRC7 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE"   "LRRC7 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "LRRC7 MUTATED"   "LRRC7 MUTATED" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE"   "LRRC7 MUTATED" "LRRC7 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LRRC7 MUTATED" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
  "LRRC7 MUTATED" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LRRC7 WILD-TYPE"   "LRRC7 MUTATED" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LRRC7 MUTATED" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE"   "LRRC7 MUTATED" "LRRC7 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" "LRRC7 WILD-TYPE" 
[1] "hr=" "1"  
D420V2, continuous
D420V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRRC7 MUTATED      8    4
  LRRC7 WILD-TYPE  146   64
        clus
vv       LRRC7 MUTATED LRRC7 WILD-TYPE
  COLON              8             146
  RECTUM             4              64
D420V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRRC7 MUTATED      7    5
  LRRC7 WILD-TYPE  110  102
        clus
vv       LRRC7 MUTATED LRRC7 WILD-TYPE
  FEMALE             5             102
  MALE               7             110
D420V5, multiclass
                                clus
vv                               LRRC7 MUTATED LRRC7 WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D420V6, multiclass
    clus
vv   LRRC7 MUTATED LRRC7 WILD-TYPE
  T1             3               6
  T2             4              43
  T3             3             147
  T4             2              15
D420V7, multiclass
    clus
vv   LRRC7 MUTATED LRRC7 WILD-TYPE
  N0            11             123
  N1             1              43
  N2             0              46
D420V8, multiclass
     clus
vv    LRRC7 MUTATED LRRC7 WILD-TYPE
  M0             11             178
  M1              0              31
  M1A             0               1
D420V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRRC7 MUTATED     12    0
  LRRC7 WILD-TYPE  204    8
     clus
vv    LRRC7 MUTATED LRRC7 WILD-TYPE
  NO              0               8
  YES            12             204

Clustering(421) Variable = SLCO4C1 MUTATION ANALYSIS
D421V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLCO4C1 MUTATED" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SLCO4C1 MUTATED" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLCO4C1 MUTATED" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SLCO4C1 MUTATED" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLCO4C1 MUTATED" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SLCO4C1 MUTATED" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
[1] "hr=" "1.1"
D421V2, continuous
D421V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLCO4C1 MUTATED      9    2
  SLCO4C1 WILD-TYPE  145   66
        clus
vv       SLCO4C1 MUTATED SLCO4C1 WILD-TYPE
  COLON                9               145
  RECTUM               2                66
D421V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLCO4C1 MUTATED      8    3
  SLCO4C1 WILD-TYPE  109  104
        clus
vv       SLCO4C1 MUTATED SLCO4C1 WILD-TYPE
  FEMALE               3               104
  MALE                 8               109
D421V5, multiclass
                                clus
vv                               SLCO4C1 MUTATED SLCO4C1 WILD-TYPE
  COLON ADENOCARCINOMA                         5               123
  COLON MUCINOUS ADENOCARCINOMA                4                20
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D421V6, multiclass
    clus
vv   SLCO4C1 MUTATED SLCO4C1 WILD-TYPE
  T1               0                 9
  T2               2                45
  T3               4               146
  T4               4                13
D421V7, multiclass
    clus
vv   SLCO4C1 MUTATED SLCO4C1 WILD-TYPE
  N0               7               127
  N1               4                40
  N2               0                46
D421V8, multiclass
     clus
vv    SLCO4C1 MUTATED SLCO4C1 WILD-TYPE
  M0               10               179
  M1                0                31
  M1A               0                 1
D421V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLCO4C1 MUTATED     10    1
  SLCO4C1 WILD-TYPE  206    7
     clus
vv    SLCO4C1 MUTATED SLCO4C1 WILD-TYPE
  NO                1                 7
  YES              10               206

Clustering(422) Variable = TGFB2 MUTATION ANALYSIS
D422V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE"   "TGFB2 MUTATED" "TGFB2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE"   "TGFB2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TGFB2 MUTATED" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "TGFB2 MUTATED" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE"   "TGFB2 MUTATED" "TGFB2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE"   "TGFB2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TGFB2 MUTATED" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "TGFB2 MUTATED" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE"   "TGFB2 MUTATED" "TGFB2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE"   "TGFB2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TGFB2 MUTATED" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "TGFB2 MUTATED" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
[1] "hr=" "1.6"
D422V2, continuous
D422V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TGFB2 MUTATED      4    2
  TGFB2 WILD-TYPE  150   66
        clus
vv       TGFB2 MUTATED TGFB2 WILD-TYPE
  COLON              4             150
  RECTUM             2              66
D422V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TGFB2 MUTATED      6    0
  TGFB2 WILD-TYPE  111  107
        clus
vv       TGFB2 MUTATED TGFB2 WILD-TYPE
  FEMALE             0             107
  MALE               6             111
D422V5, multiclass
                                clus
vv                               TGFB2 MUTATED TGFB2 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              0              24
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D422V6, multiclass
    clus
vv   TGFB2 MUTATED TGFB2 WILD-TYPE
  T1             0               9
  T2             2              45
  T3             4             146
  T4             0              17
D422V7, multiclass
    clus
vv   TGFB2 MUTATED TGFB2 WILD-TYPE
  N0             5             129
  N1             1              43
  N2             0              46
D422V8, multiclass
     clus
vv    TGFB2 MUTATED TGFB2 WILD-TYPE
  M0              5             184
  M1              0              31
  M1A             0               1
D422V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TGFB2 MUTATED      6    0
  TGFB2 WILD-TYPE  210    8
     clus
vv    TGFB2 MUTATED TGFB2 WILD-TYPE
  NO              0               8
  YES             6             210

Clustering(423) Variable = ASTN2 MUTATION ANALYSIS
D423V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED"   "ASTN2 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED"   "ASTN2 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED"   "ASTN2 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
[1] "hr=" "1.3"
D423V2, continuous
D423V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ASTN2 MUTATED      8    4
  ASTN2 WILD-TYPE  146   64
        clus
vv       ASTN2 MUTATED ASTN2 WILD-TYPE
  COLON              8             146
  RECTUM             4              64
D423V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ASTN2 MUTATED      5    7
  ASTN2 WILD-TYPE  112  100
        clus
vv       ASTN2 MUTATED ASTN2 WILD-TYPE
  FEMALE             7             100
  MALE               5             112
D423V5, multiclass
                                clus
vv                               ASTN2 MUTATED ASTN2 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D423V6, multiclass
    clus
vv   ASTN2 MUTATED ASTN2 WILD-TYPE
  T1             0               9
  T2             3              44
  T3             8             142
  T4             1              16
D423V7, multiclass
    clus
vv   ASTN2 MUTATED ASTN2 WILD-TYPE
  N0             6             128
  N1             2              42
  N2             4              42
D423V8, multiclass
     clus
vv    ASTN2 MUTATED ASTN2 WILD-TYPE
  M0             11             178
  M1              1              30
  M1A             0               1
D423V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ASTN2 MUTATED     12    0
  ASTN2 WILD-TYPE  204    8
     clus
vv    ASTN2 MUTATED ASTN2 WILD-TYPE
  NO              0               8
  YES            12             204

Clustering(424) Variable = OR5D18 MUTATION ANALYSIS
D424V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE"   "OR5D18 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE"   "OR5D18 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR5D18 WILD-TYPE"   "OR5D18 MUTATED" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "OR5D18 MUTATED" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE"   "OR5D18 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE"   "OR5D18 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR5D18 WILD-TYPE"   "OR5D18 MUTATED" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "OR5D18 MUTATED" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE"   "OR5D18 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE"   "OR5D18 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR5D18 WILD-TYPE"   "OR5D18 MUTATED" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "OR5D18 MUTATED" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" "OR5D18 WILD-TYPE" 
[1] "hr="     "9300000"
D424V2, continuous
D424V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5D18 MUTATED      3    2
  OR5D18 WILD-TYPE  151   66
        clus
vv       OR5D18 MUTATED OR5D18 WILD-TYPE
  COLON               3              151
  RECTUM              2               66
D424V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5D18 MUTATED      3    2
  OR5D18 WILD-TYPE  114  105
        clus
vv       OR5D18 MUTATED OR5D18 WILD-TYPE
  FEMALE              2              105
  MALE                3              114
D424V5, multiclass
                                clus
vv                               OR5D18 MUTATED OR5D18 WILD-TYPE
  COLON ADENOCARCINOMA                        3              125
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D424V6, multiclass
    clus
vv   OR5D18 MUTATED OR5D18 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              3              147
  T4              0               17
D424V7, multiclass
    clus
vv   OR5D18 MUTATED OR5D18 WILD-TYPE
  N0              4              130
  N1              0               44
  N2              1               45
D424V8, multiclass
     clus
vv    OR5D18 MUTATED OR5D18 WILD-TYPE
  M0               4              185
  M1               0               31
  M1A              0                1
D424V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5D18 MUTATED      5    0
  OR5D18 WILD-TYPE  211    8
     clus
vv    OR5D18 MUTATED OR5D18 WILD-TYPE
  NO               0                8
  YES              5              211

Clustering(425) Variable = P2RY14 MUTATION ANALYSIS
D425V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE"   "P2RY14 MUTATED" "P2RY14 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
  "P2RY14 MUTATED" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "P2RY14 MUTATED" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE"   "P2RY14 MUTATED" "P2RY14 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
  "P2RY14 MUTATED" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "P2RY14 MUTATED" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE"   "P2RY14 MUTATED" "P2RY14 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
  "P2RY14 MUTATED" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "P2RY14 MUTATED" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D425V2, continuous
D425V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  P2RY14 MUTATED      4    2
  P2RY14 WILD-TYPE  150   66
        clus
vv       P2RY14 MUTATED P2RY14 WILD-TYPE
  COLON               4              150
  RECTUM              2               66
D425V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  P2RY14 MUTATED      4    2
  P2RY14 WILD-TYPE  113  105
        clus
vv       P2RY14 MUTATED P2RY14 WILD-TYPE
  FEMALE              2              105
  MALE                4              113
D425V5, multiclass
                                clus
vv                               P2RY14 MUTATED P2RY14 WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D425V6, multiclass
    clus
vv   P2RY14 MUTATED P2RY14 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              4              146
  T4              0               17
D425V7, multiclass
    clus
vv   P2RY14 MUTATED P2RY14 WILD-TYPE
  N0              6              128
  N1              0               44
  N2              0               46
D425V8, multiclass
     clus
vv    P2RY14 MUTATED P2RY14 WILD-TYPE
  M0               6              183
  M1               0               31
  M1A              0                1
D425V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  P2RY14 MUTATED      6    0
  P2RY14 WILD-TYPE  210    8
     clus
vv    P2RY14 MUTATED P2RY14 WILD-TYPE
  NO               0                8
  YES              6              210

Clustering(426) Variable = RNF17 MUTATION ANALYSIS
D426V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE"   "RNF17 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RNF17 WILD-TYPE"   "RNF17 MUTATED" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE"   "RNF17 MUTATED" "RNF17 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RNF17 WILD-TYPE"   "RNF17 MUTATED" "RNF17 WILD-TYPE"   "RNF17 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RNF17 WILD-TYPE"   "RNF17 MUTATED" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RNF17 WILD-TYPE"   "RNF17 MUTATED" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "RNF17 MUTATED" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE"   "RNF17 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RNF17 WILD-TYPE"   "RNF17 MUTATED" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE"   "RNF17 MUTATED" "RNF17 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RNF17 WILD-TYPE"   "RNF17 MUTATED" "RNF17 WILD-TYPE"   "RNF17 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RNF17 WILD-TYPE"   "RNF17 MUTATED" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RNF17 WILD-TYPE"   "RNF17 MUTATED" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "RNF17 MUTATED" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE"   "RNF17 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RNF17 WILD-TYPE"   "RNF17 MUTATED" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE"   "RNF17 MUTATED" "RNF17 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RNF17 WILD-TYPE"   "RNF17 MUTATED" "RNF17 WILD-TYPE"   "RNF17 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RNF17 WILD-TYPE"   "RNF17 MUTATED" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RNF17 WILD-TYPE"   "RNF17 MUTATED" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "RNF17 MUTATED" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" "RNF17 WILD-TYPE" 
[1] "hr=" "2.5"
D426V2, continuous
D426V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RNF17 MUTATED     10    2
  RNF17 WILD-TYPE  144   66
        clus
vv       RNF17 MUTATED RNF17 WILD-TYPE
  COLON             10             144
  RECTUM             2              66
D426V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RNF17 MUTATED      6    6
  RNF17 WILD-TYPE  111  101
        clus
vv       RNF17 MUTATED RNF17 WILD-TYPE
  FEMALE             6             101
  MALE               6             111
D426V5, multiclass
                                clus
vv                               RNF17 MUTATED RNF17 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              6              18
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D426V6, multiclass
    clus
vv   RNF17 MUTATED RNF17 WILD-TYPE
  T1             1               8
  T2             3              44
  T3             4             146
  T4             4              13
D426V7, multiclass
    clus
vv   RNF17 MUTATED RNF17 WILD-TYPE
  N0             8             126
  N1             1              43
  N2             3              43
D426V8, multiclass
     clus
vv    RNF17 MUTATED RNF17 WILD-TYPE
  M0              9             180
  M1              2              29
  M1A             0               1
D426V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RNF17 MUTATED     12    0
  RNF17 WILD-TYPE  204    8
     clus
vv    RNF17 MUTATED RNF17 WILD-TYPE
  NO              0               8
  YES            12             204

Clustering(427) Variable = SACS MUTATION ANALYSIS
D427V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
  "SACS MUTATED" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "SACS MUTATED" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SACS WILD-TYPE" "SACS WILD-TYPE"   "SACS MUTATED"   "SACS MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SACS WILD-TYPE" "SACS WILD-TYPE"   "SACS MUTATED" "SACS WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE"   "SACS MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
  "SACS MUTATED" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SACS WILD-TYPE"   "SACS MUTATED" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
  "SACS MUTATED" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "SACS MUTATED" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SACS WILD-TYPE" "SACS WILD-TYPE"   "SACS MUTATED" "SACS WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SACS WILD-TYPE"   "SACS MUTATED" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "SACS MUTATED" "SACS WILD-TYPE" "SACS WILD-TYPE"   "SACS MUTATED" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
  "SACS MUTATED" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "SACS MUTATED" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SACS WILD-TYPE" "SACS WILD-TYPE"   "SACS MUTATED"   "SACS MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SACS WILD-TYPE" "SACS WILD-TYPE"   "SACS MUTATED" "SACS WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE"   "SACS MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
  "SACS MUTATED" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SACS WILD-TYPE"   "SACS MUTATED" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
  "SACS MUTATED" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "SACS MUTATED" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SACS WILD-TYPE" "SACS WILD-TYPE"   "SACS MUTATED" "SACS WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SACS WILD-TYPE"   "SACS MUTATED" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "SACS MUTATED" "SACS WILD-TYPE" "SACS WILD-TYPE"   "SACS MUTATED" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
  "SACS MUTATED" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "SACS MUTATED" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SACS WILD-TYPE" "SACS WILD-TYPE"   "SACS MUTATED"   "SACS MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SACS WILD-TYPE" "SACS WILD-TYPE"   "SACS MUTATED" "SACS WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE"   "SACS MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
  "SACS MUTATED" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SACS WILD-TYPE"   "SACS MUTATED" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
  "SACS MUTATED" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "SACS MUTATED" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SACS WILD-TYPE" "SACS WILD-TYPE"   "SACS MUTATED" "SACS WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SACS WILD-TYPE"   "SACS MUTATED" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "SACS MUTATED" "SACS WILD-TYPE" "SACS WILD-TYPE"   "SACS MUTATED" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" "SACS WILD-TYPE" 
[1] "hr=" "1.1"
D427V2, continuous
D427V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SACS MUTATED     16    6
  SACS WILD-TYPE  138   62
        clus
vv       SACS MUTATED SACS WILD-TYPE
  COLON            16            138
  RECTUM            6             62
D427V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SACS MUTATED     11   11
  SACS WILD-TYPE  106   96
        clus
vv       SACS MUTATED SACS WILD-TYPE
  FEMALE           11             96
  MALE             11            106
D427V5, multiclass
                                clus
vv                               SACS MUTATED SACS WILD-TYPE
  COLON ADENOCARCINOMA                     13            115
  COLON MUCINOUS ADENOCARCINOMA             3             21
  RECTAL ADENOCARCINOMA                     6             51
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D427V6, multiclass
    clus
vv   SACS MUTATED SACS WILD-TYPE
  T1            0              9
  T2            4             43
  T3           14            136
  T4            4             13
D427V7, multiclass
    clus
vv   SACS MUTATED SACS WILD-TYPE
  N0           14            120
  N1            2             42
  N2            6             40
D427V8, multiclass
     clus
vv    SACS MUTATED SACS WILD-TYPE
  M0            17            172
  M1             4             27
  M1A            0              1
D427V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SACS MUTATED     21    1
  SACS WILD-TYPE  195    7
     clus
vv    SACS MUTATED SACS WILD-TYPE
  NO             1              7
  YES           21            195

Clustering(428) Variable = RDH16 MUTATION ANALYSIS
D428V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE"   "RDH16 MUTATED" "RDH16 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RDH16 WILD-TYPE"   "RDH16 MUTATED" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE"   "RDH16 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE"   "RDH16 MUTATED" "RDH16 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RDH16 WILD-TYPE"   "RDH16 MUTATED" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE"   "RDH16 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE"   "RDH16 MUTATED" "RDH16 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RDH16 WILD-TYPE"   "RDH16 MUTATED" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE"   "RDH16 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" "RDH16 WILD-TYPE" 
[1] "hr=" "7.2"
D428V2, continuous
D428V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RDH16 MUTATED      3    0
  RDH16 WILD-TYPE  151   68
        clus
vv       RDH16 MUTATED RDH16 WILD-TYPE
  COLON              3             151
  RECTUM             0              68
D428V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RDH16 MUTATED      2    1
  RDH16 WILD-TYPE  115  106
        clus
vv       RDH16 MUTATED RDH16 WILD-TYPE
  FEMALE             1             106
  MALE               2             115
D428V5, multiclass
                                clus
vv                               RDH16 MUTATED RDH16 WILD-TYPE
  COLON ADENOCARCINOMA                       2             126
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      0              57
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D428V6, multiclass
    clus
vv   RDH16 MUTATED RDH16 WILD-TYPE
  T1             0               9
  T2             0              47
  T3             2             148
  T4             1              16
D428V7, multiclass
    clus
vv   RDH16 MUTATED RDH16 WILD-TYPE
  N0             2             132
  N1             1              43
  N2             0              46
D428V8, multiclass
     clus
vv    RDH16 MUTATED RDH16 WILD-TYPE
  M0              3             186
  M1              0              31
  M1A             0               1
D428V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RDH16 MUTATED      3    0
  RDH16 WILD-TYPE  213    8
     clus
vv    RDH16 MUTATED RDH16 WILD-TYPE
  NO              0               8
  YES             3             213

Clustering(429) Variable = ADAM2 MUTATION ANALYSIS
D429V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE"   "ADAM2 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ADAM2 WILD-TYPE"   "ADAM2 MUTATED" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ADAM2 MUTATED" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE"   "ADAM2 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ADAM2 WILD-TYPE"   "ADAM2 MUTATED" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ADAM2 MUTATED" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE"   "ADAM2 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE"   "ADAM2 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ADAM2 WILD-TYPE"   "ADAM2 MUTATED" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ADAM2 MUTATED" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE"   "ADAM2 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ADAM2 WILD-TYPE"   "ADAM2 MUTATED" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ADAM2 MUTATED" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE"   "ADAM2 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE"   "ADAM2 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ADAM2 WILD-TYPE"   "ADAM2 MUTATED" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ADAM2 MUTATED" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE"   "ADAM2 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ADAM2 WILD-TYPE"   "ADAM2 MUTATED" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ADAM2 MUTATED" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE"   "ADAM2 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" "ADAM2 WILD-TYPE" 
[1] "hr=" "2.9"
D429V2, continuous
D429V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ADAM2 MUTATED      6    2
  ADAM2 WILD-TYPE  148   66
        clus
vv       ADAM2 MUTATED ADAM2 WILD-TYPE
  COLON              6             148
  RECTUM             2              66
D429V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ADAM2 MUTATED      4    4
  ADAM2 WILD-TYPE  113  103
        clus
vv       ADAM2 MUTATED ADAM2 WILD-TYPE
  FEMALE             4             103
  MALE               4             113
D429V5, multiclass
                                clus
vv                               ADAM2 MUTATED ADAM2 WILD-TYPE
  COLON ADENOCARCINOMA                       3             125
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D429V6, multiclass
    clus
vv   ADAM2 MUTATED ADAM2 WILD-TYPE
  T1             0               9
  T2             1              46
  T3             3             147
  T4             3              14
D429V7, multiclass
    clus
vv   ADAM2 MUTATED ADAM2 WILD-TYPE
  N0             7             127
  N1             0              44
  N2             1              45
D429V8, multiclass
     clus
vv    ADAM2 MUTATED ADAM2 WILD-TYPE
  M0              8             181
  M1              0              31
  M1A             0               1
D429V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ADAM2 MUTATED      6    2
  ADAM2 WILD-TYPE  210    6
     clus
vv    ADAM2 MUTATED ADAM2 WILD-TYPE
  NO              2               6
  YES             6             210

Clustering(430) Variable = ADAMTS5 MUTATION ANALYSIS
D430V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
[1] "hr=" "3.8"
D430V2, continuous
D430V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ADAMTS5 MUTATED     11    1
  ADAMTS5 WILD-TYPE  143   67
        clus
vv       ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  COLON               11               143
  RECTUM               1                67
D430V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ADAMTS5 MUTATED      5    7
  ADAMTS5 WILD-TYPE  112  100
        clus
vv       ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  FEMALE               7               100
  MALE                 5               112
D430V5, multiclass
                                clus
vv                               ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  COLON ADENOCARCINOMA                         9               119
  COLON MUCINOUS ADENOCARCINOMA                2                22
  RECTAL ADENOCARCINOMA                        1                56
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D430V6, multiclass
    clus
vv   ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  T1               1                 8
  T2               0                47
  T3               9               141
  T4               2                15
D430V7, multiclass
    clus
vv   ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  N0               9               125
  N1               1                43
  N2               2                44
D430V8, multiclass
     clus
vv    ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  M0               10               179
  M1                2                29
  M1A               0                 1
D430V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ADAMTS5 MUTATED     12    0
  ADAMTS5 WILD-TYPE  204    8
     clus
vv    ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  NO                0                 8
  YES              12               204
                     V1.D                        V2                        V3 
          "Time to Death"                     "AGE" "PRIMARY.SITE.OF.DISEASE" 
                       V4                        V5                        V6 
                 "GENDER"       "HISTOLOGICAL.TYPE"             "PATHOLOGY.T" 
                       V7                        V8                        V9 
            "PATHOLOGY.N"     "PATHOLOGICSPREAD(M)"     "NEOADJUVANT.THERAPY" 
> q(save="no")
