
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.32.3479/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.32.3479/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/LUSC/1557926/1.GDAC_mergedClustering.Finished/LUSC.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/LUSC/1445469/1.GDAC_clinicalDataPicker.Finished/LUSC.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=1", "-MF=ALL", "-oT=", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  

nPatients in clinical file=279, in cluster file=283, common to both=278
[1]   7 278
[1] "MRNA_CNMF"
[1] 3
 1  2  3  4 
43 50 30 31 
 1  2  3  4 
43 50 30 31 
[1] "MRNA_CHIERARCHICAL"
[1] 3
 1  2  3 
28 54 72 
 1  2  3 
28 54 72 
[1] "METHLYATION_CNMF"
[1] 3
 1  2  3 
55 51 38 
 1  2  3 
55 51 38 
[1] "MRNASEQ_CNMF"
[1] 3
 1  2  3  4  5  6  7  8 
22 20 55 40 34 36  4  9 
 1  2  3  4  5  6  7  8 
22 20 55 40 34 36  4  9 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
 1  2  3 
65 74 81 
 1  2  3 
65 74 81 
[1] "MIRSEQ_CNMF"
[1] 3
 1  2  3 
84 73 45 
 1  2  3 
84 73 45 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
 1  2  3 
97 63 42 
 1  2  3 
97 63 42 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "KARNOFSKYPERFORMANCESCORE"             
[11] "HISTOLOGICALTYPE"                      
[12] "PATHOLOGICSPREAD(PT)"                  
[13] "PATHOLOGICSPREAD(PN)"                  
[14] "PATHOLOGICSPREAD(M)"                   
[15] "RADIATIONS.RADIATION.REGIMENINDICATION"
[16] "NEOADJUVANTTHERAPY"                    
[17] "BATCHNUMBER"                           

Input Data has 17 rows and 278 columns.

[1] "Batch" "17"   
[1] "Last Follow UP"
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
         370          136         2466         2417          146         1415 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
         345          396         1810          862          758           49 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
        1331          187           85         2753           92          826 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
        3516         1426         3016         2133         1852         1058 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 
         473          964         3724          283         3644          267 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 
         962          908          656          329          608          223 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
         454          131         1953           53          429          822 
TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 
        1485          622         1067         1470          734           17 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 
        1161         1057          399           NA          587           NA 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
         358          964         1974         1932          444         1345 
TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 
          24         1651         2170           NA          357          573 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
         915         1912         1713          505         2524         3469 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
        2979         1311         5286         3149         4299          428 
TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 
          NA          334           NA          821           80         1874 
TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 
         958          881          999          950         1528         1575 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
         994           NA          329          235          428          698 
TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
         168           NA           NA          120           13           12 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
         199          246          227          238          207           12 
TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
         103         1454         2253         1360         2086           NA 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
        2130         1848           52          740           59          832 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 
        1107          474         1084           24          544          556 
TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 
         550          399          352          573          258          549 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 
         213          183           85           NA           NA          212 
TCGA-43-7657 TCGA-43-7658 TCGA-46-3765 TCGA-46-3766 TCGA-46-3767 TCGA-46-3768 
          48         2023           NA           NA           NA           NA 
TCGA-46-3769 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
          NA           29           18           12           12           63 
TCGA-51-6867 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
          NA          541          178           NA           NA          880 
TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
           3           NA           62           31           30           13 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-60-2695 TCGA-60-2696 
          30           44           40           26          473          109 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 
          NA          311           NA           NA         2500          660 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
        2082         1505         1685          888          274         1456 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
         512         1075         1181          931           96          793 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-63-5128 
         733          693           37          719          358           NA 
TCGA-63-5131 TCGA-63-6202 TCGA-63-7020 TCGA-63-7021 TCGA-63-7022 TCGA-63-7023 
          NA           NA           NA           NA           NA           NA 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
         516         1311           61          641           30           31 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
          61           28           30           30          638          761 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
          30           61           31           61           61          215 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
         700          578           92           61          578          366 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
         121          365          759           59          790         1217 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
         699          123          699          153          913          306 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-70-6722 
        1645          122         1492           83          202           NA 
TCGA-70-6723 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 
          NA           NA           NA           NA           NA           NA 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 
        2736           NA           15         1285           NA           NA 
TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-79-5596 TCGA-85-6175 TCGA-85-6560 
          NA           NA          479           NA           NA           11 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 
          24           34           18           10           49            1 
TCGA-85-7710 TCGA-85-7843 TCGA-85-7844 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 
          NA           35           38           41           47           89 
TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 
          18           82          106           87           NA         1213 
TCGA-96-7545 TCGA-98-7454 
        1777          115 
Variable 1:'AGE':	nDistinctValues=42,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=107,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=199,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=18,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=155,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=8,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 11:'HISTOLOGICAL.TYPE':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGY.T':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'PATHOLOGY.N':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'PATHOLOGICSPREAD(M)':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'NEOADJUVANT.THERAPY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'BATCH.NUMBER':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                                   
[2] "GENDER"                                
[3] "KARNOFSKY.PERFORMANCE.SCORE"           
[4] "HISTOLOGICAL.TYPE"                     
[5] "PATHOLOGY.T"                           
[6] "PATHOLOGY.N"                           
[7] "PATHOLOGICSPREAD(M)"                   
[8] "RADIATIONS.RADIATION.REGIMENINDICATION"
[9] "NEOADJUVANT.THERAPY"                   
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "5"          
[1] "PATHOLOGY.N" "6"          
Output Data has 278 columns, 1 survival variables, and 9 non-survival variables.
AGE, nv=42, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=8, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=5, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
 64 171  26  17 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
 64 171  26  17 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
 T1  T2  T3  T4 
 64 171  26  17 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
 64 171  26  17 
PATHOLOGY.N, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2  N3 
176  74  23   5 
[1] "table(vv)"
vv
 N0  N1  N2  N3 
176  74  23   5 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
 N0  N1  N2  N3 
176  74  23   5 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 N0  N1  N2  N3 
176  74  23   5 
PATHOLOGICSPREAD(M), nv=3, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NEOADJUVANT.THERAPY, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = MRNA_CNMF
D1V1, survival
  [1] "subtype1" "subtype2" "subtype2" "subtype3" "subtype4" "subtype2"
  [7] "subtype2" "subtype1" "subtype2" "subtype2" "subtype4" "subtype1"
 [13] "subtype1" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype4" "subtype1" "subtype1"
 [25] "subtype1" "subtype1" "subtype4" "subtype3" "subtype1" "subtype3"
 [31] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [37] "subtype4" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [43] "subtype2" "subtype1" "subtype4" "subtype2" "subtype4" "subtype2"
 [49] "subtype1" "subtype4" "subtype4" "subtype1" "subtype2" "subtype1"
 [55] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [61] "subtype1" "subtype1" "subtype3" "subtype4" "subtype4" "subtype4"
 [67] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
 [73] "subtype1" "subtype3" "subtype4" "subtype4" "subtype2" "subtype2"
 [79] "subtype3" "subtype4" "subtype3" "subtype2" "subtype1" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype1" "subtype4" "subtype3"
 [91] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [97] "subtype3" "subtype4" "subtype3" "subtype3" "subtype4" "subtype1"
[103] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[109] "subtype4" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[115] "subtype3" "subtype4" "subtype4" "subtype4" "subtype4" "subtype2"
[121] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[127] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[133] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[139] "subtype2" "subtype1" "subtype1" "subtype4" "subtype2" "subtype2"
[145] "subtype4" "subtype2" "subtype2" "subtype2"
  [1] "subtype1" "subtype2" "subtype2" "subtype3" "subtype4" "subtype2"
  [7] "subtype2" "subtype1" "subtype2" "subtype2" "subtype4" "subtype1"
 [13] "subtype1" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype4" "subtype1" "subtype1"
 [25] "subtype1" "subtype1" "subtype4" "subtype3" "subtype1" "subtype3"
 [31] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [37] "subtype4" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [43] "subtype2" "subtype1" "subtype4" "subtype2" "subtype4" "subtype2"
 [49] "subtype1" "subtype4" "subtype4" "subtype1" "subtype2" "subtype1"
 [55] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [61] "subtype1" "subtype1" "subtype3" "subtype4" "subtype4" "subtype4"
 [67] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
 [73] "subtype1" "subtype3" "subtype4" "subtype4" "subtype2" "subtype2"
 [79] "subtype3" "subtype4" "subtype3" "subtype2" "subtype1" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype1" "subtype4" "subtype3"
 [91] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [97] "subtype3" "subtype4" "subtype3" "subtype3" "subtype4" "subtype1"
[103] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[109] "subtype4" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[115] "subtype3" "subtype4" "subtype4" "subtype4" "subtype4" "subtype2"
[121] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[127] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[133] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[139] "subtype2" "subtype1" "subtype1" "subtype4" "subtype2" "subtype2"
[145] "subtype4" "subtype2" "subtype2" "subtype2"
  [1] "subtype1" "subtype2" "subtype2" "subtype3" "subtype4" "subtype2"
  [7] "subtype2" "subtype1" "subtype2" "subtype2" "subtype4" "subtype1"
 [13] "subtype1" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype4" "subtype1" "subtype1"
 [25] "subtype1" "subtype1" "subtype4" "subtype3" "subtype1" "subtype3"
 [31] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [37] "subtype4" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [43] "subtype2" "subtype1" "subtype4" "subtype2" "subtype4" "subtype2"
 [49] "subtype1" "subtype4" "subtype4" "subtype1" "subtype2" "subtype1"
 [55] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [61] "subtype1" "subtype1" "subtype3" "subtype4" "subtype4" "subtype4"
 [67] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
 [73] "subtype1" "subtype3" "subtype4" "subtype4" "subtype2" "subtype2"
 [79] "subtype3" "subtype4" "subtype3" "subtype2" "subtype1" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype1" "subtype4" "subtype3"
 [91] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [97] "subtype3" "subtype4" "subtype3" "subtype3" "subtype4" "subtype1"
[103] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[109] "subtype4" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[115] "subtype3" "subtype4" "subtype4" "subtype4" "subtype4" "subtype2"
[121] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[127] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[133] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[139] "subtype2" "subtype1" "subtype1" "subtype4" "subtype2" "subtype2"
[145] "subtype4" "subtype2" "subtype2" "subtype2"
D1V2, continuous
D1V3, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   34    9
  subtype2   37   13
  subtype3   19   11
  subtype4   20   11
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE        9       13       11       11
  MALE         34       37       19       20
D1V4, continuous
D1V5, multiclass
D1V6, multiclass
D1V7, multiclass
D1V8, multiclass
    clus
vv   subtype1 subtype2 subtype3 subtype4
  M0       39       48       30       29
  M1        2        0        0        2
D1V9, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   42    1
  subtype2   50    0
  subtype3   29    1
  subtype4   31    0
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         1        0        1        0
  YES       42       50       29       31
D1V10, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   39    4
  subtype2   45    5
  subtype3   27    3
  subtype4   30    1
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         4        5        3        1
  YES       39       45       27       30

Clustering(2) Variable = MRNA_CHIERARCHICAL
D2V1, survival
  [1] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [13] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [31] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
 [37] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
 [43] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
 [55] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [61] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [67] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [73] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [91] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[109] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[115] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[121] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[127] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[139] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[145] "subtype3" "subtype2" "subtype2" "subtype2"
  [1] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [13] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [31] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
 [37] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
 [43] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
 [55] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [61] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [67] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [73] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [91] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[109] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[115] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[121] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[127] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[139] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[145] "subtype3" "subtype2" "subtype2" "subtype2"
  [1] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [13] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [31] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
 [37] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
 [43] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
 [55] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [61] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [67] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [73] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [91] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[109] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[115] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[121] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[127] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[139] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[145] "subtype3" "subtype2" "subtype2" "subtype2"
D2V2, continuous
D2V3, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   13   15
  subtype2   42   12
  subtype3   55   17
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       15       12       17
  MALE         13       42       55
D2V4, continuous
D2V5, multiclass
D2V6, multiclass
D2V7, multiclass
D2V8, multiclass
    clus
vv   subtype1 subtype2 subtype3
  M0       27       52       67
  M1        1        0        3
D2V9, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   27    1
  subtype2   54    0
  subtype3   71    1
     clus
vv    subtype1 subtype2 subtype3
  NO         1        0        1
  YES       27       54       71
D2V10, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   25    3
  subtype2   49    5
  subtype3   67    5
     clus
vv    subtype1 subtype2 subtype3
  NO         3        5        5
  YES       25       49       67

Clustering(3) Variable = METHLYATION_CNMF
D3V1, survival
  [1] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
  [7] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [13] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [25] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
 [31] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [37] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
 [49] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [55] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [61] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
 [67] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
 [73] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [79] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [85] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [91] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [97] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[103] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[121] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[127] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
  [1] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
  [7] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [13] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [25] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
 [31] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [37] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
 [49] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [55] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [61] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
 [67] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
 [73] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [79] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [85] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [91] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [97] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[103] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[121] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[127] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
  [1] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
  [7] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [13] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [25] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
 [31] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [37] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
 [49] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [55] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [61] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
 [67] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
 [73] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [79] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [85] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [91] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [97] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[103] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[121] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[127] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
D3V2, continuous
D3V3, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   38   17
  subtype2   38   13
  subtype3   28   10
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       17       13       10
  MALE         38       38       28
D3V4, continuous
D3V5, multiclass
D3V6, multiclass
D3V7, multiclass
D3V8, multiclass
D3V9, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   52    3
  subtype2   50    1
  subtype3   34    4
     clus
vv    subtype1 subtype2 subtype3
  NO         3        1        4
  YES       52       50       34
D3V10, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   48    7
  subtype2   47    4
  subtype3   33    5
     clus
vv    subtype1 subtype2 subtype3
  NO         7        4        5
  YES       48       47       33

Clustering(4) Variable = MRNASEQ_CNMF
D4V1, survival
  [1] "subtype1" "subtype2" "subtype3" "subtype4" "subtype4" "subtype3"
  [7] "subtype5" "subtype5" "subtype3" "subtype3" "subtype1" "subtype5"
 [13] "subtype5" "subtype4" "subtype3" "subtype3" "subtype3" "subtype3"
 [19] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [25] "subtype6" "subtype1" "subtype5" "subtype2" "subtype5" "subtype6"
 [31] "subtype4" "subtype5" "subtype4" "subtype6" "subtype6" "subtype2"
 [37] "subtype7" "subtype5" "subtype2" "subtype7" "subtype6" "subtype5"
 [43] "subtype4" "subtype6" "subtype2" "subtype8" "subtype4" "subtype3"
 [49] "subtype2" "subtype5" "subtype4" "subtype2" "subtype5" "subtype3"
 [55] "subtype3" "subtype3" "subtype4" "subtype8" "subtype4" "subtype4"
 [61] "subtype1" "subtype6" "subtype3" "subtype4" "subtype5" "subtype5"
 [67] "subtype5" "subtype4" "subtype8" "subtype5" "subtype6" "subtype5"
 [73] "subtype3" "subtype3" "subtype6" "subtype6" "subtype3" "subtype5"
 [79] "subtype8" "subtype4" "subtype8" "subtype8" "subtype2" "subtype4"
 [85] "subtype3" "subtype5" "subtype4" "subtype4" "subtype4" "subtype2"
 [91] "subtype1" "subtype1" "subtype6" "subtype4" "subtype6" "subtype6"
 [97] "subtype3" "subtype6" "subtype6" "subtype6" "subtype6" "subtype3"
[103] "subtype2" "subtype3" "subtype5" "subtype3" "subtype8" "subtype6"
[109] "subtype4" "subtype2" "subtype6" "subtype6" "subtype3" "subtype3"
[115] "subtype5" "subtype6" "subtype6" "subtype3" "subtype4" "subtype6"
[121] "subtype6" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[127] "subtype4" "subtype3" "subtype3" "subtype3" "subtype5" "subtype1"
[133] "subtype4" "subtype6" "subtype4" "subtype5" "subtype6" "subtype6"
[139] "subtype1" "subtype4" "subtype3" "subtype2" "subtype4" "subtype4"
[145] "subtype4" "subtype6" "subtype2" "subtype5" "subtype5" "subtype1"
[151] "subtype5" "subtype3" "subtype3" "subtype6" "subtype4" "subtype6"
[157] "subtype3" "subtype1" "subtype3" "subtype5" "subtype4" "subtype7"
[163] "subtype6" "subtype4" "subtype6" "subtype6" "subtype3" "subtype1"
[169] "subtype5" "subtype1" "subtype3" "subtype2" "subtype1" "subtype4"
[175] "subtype3" "subtype5" "subtype3" "subtype2" "subtype5" "subtype1"
[181] "subtype5" "subtype1" "subtype8" "subtype6" "subtype8" "subtype3"
[187] "subtype1" "subtype4" "subtype4" "subtype3" "subtype3" "subtype4"
[193] "subtype3" "subtype3" "subtype3" "subtype4" "subtype3" "subtype5"
[199] "subtype3" "subtype4" "subtype2" "subtype3" "subtype1" "subtype5"
  [1] "subtype1" "subtype2" "subtype3" "subtype4" "subtype4" "subtype3"
  [7] "subtype5" "subtype5" "subtype3" "subtype3" "subtype1" "subtype5"
 [13] "subtype5" "subtype4" "subtype3" "subtype3" "subtype3" "subtype3"
 [19] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [25] "subtype6" "subtype1" "subtype5" "subtype2" "subtype5" "subtype6"
 [31] "subtype4" "subtype5" "subtype4" "subtype6" "subtype6" "subtype2"
 [37] "subtype7" "subtype5" "subtype2" "subtype7" "subtype6" "subtype5"
 [43] "subtype4" "subtype6" "subtype2" "subtype8" "subtype4" "subtype3"
 [49] "subtype2" "subtype5" "subtype4" "subtype2" "subtype5" "subtype3"
 [55] "subtype3" "subtype3" "subtype4" "subtype8" "subtype4" "subtype4"
 [61] "subtype1" "subtype6" "subtype3" "subtype4" "subtype5" "subtype5"
 [67] "subtype5" "subtype4" "subtype8" "subtype5" "subtype6" "subtype5"
 [73] "subtype3" "subtype3" "subtype6" "subtype6" "subtype3" "subtype5"
 [79] "subtype8" "subtype4" "subtype8" "subtype8" "subtype2" "subtype4"
 [85] "subtype3" "subtype5" "subtype4" "subtype4" "subtype4" "subtype2"
 [91] "subtype1" "subtype1" "subtype6" "subtype4" "subtype6" "subtype6"
 [97] "subtype3" "subtype6" "subtype6" "subtype6" "subtype6" "subtype3"
[103] "subtype2" "subtype3" "subtype5" "subtype3" "subtype8" "subtype6"
[109] "subtype4" "subtype2" "subtype6" "subtype6" "subtype3" "subtype3"
[115] "subtype5" "subtype6" "subtype6" "subtype3" "subtype4" "subtype6"
[121] "subtype6" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[127] "subtype4" "subtype3" "subtype3" "subtype3" "subtype5" "subtype1"
[133] "subtype4" "subtype6" "subtype4" "subtype5" "subtype6" "subtype6"
[139] "subtype1" "subtype4" "subtype3" "subtype2" "subtype4" "subtype4"
[145] "subtype4" "subtype6" "subtype2" "subtype5" "subtype5" "subtype1"
[151] "subtype5" "subtype3" "subtype3" "subtype6" "subtype4" "subtype6"
[157] "subtype3" "subtype1" "subtype3" "subtype5" "subtype4" "subtype7"
[163] "subtype6" "subtype4" "subtype6" "subtype6" "subtype3" "subtype1"
[169] "subtype5" "subtype1" "subtype3" "subtype2" "subtype1" "subtype4"
[175] "subtype3" "subtype5" "subtype3" "subtype2" "subtype5" "subtype1"
[181] "subtype5" "subtype1" "subtype8" "subtype6" "subtype8" "subtype3"
[187] "subtype1" "subtype4" "subtype4" "subtype3" "subtype3" "subtype4"
[193] "subtype3" "subtype3" "subtype3" "subtype4" "subtype3" "subtype5"
[199] "subtype3" "subtype4" "subtype2" "subtype3" "subtype1" "subtype5"
  [1] "subtype1" "subtype2" "subtype3" "subtype4" "subtype4" "subtype3"
  [7] "subtype5" "subtype5" "subtype3" "subtype3" "subtype1" "subtype5"
 [13] "subtype5" "subtype4" "subtype3" "subtype3" "subtype3" "subtype3"
 [19] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [25] "subtype6" "subtype1" "subtype5" "subtype2" "subtype5" "subtype6"
 [31] "subtype4" "subtype5" "subtype4" "subtype6" "subtype6" "subtype2"
 [37] "subtype7" "subtype5" "subtype2" "subtype7" "subtype6" "subtype5"
 [43] "subtype4" "subtype6" "subtype2" "subtype8" "subtype4" "subtype3"
 [49] "subtype2" "subtype5" "subtype4" "subtype2" "subtype5" "subtype3"
 [55] "subtype3" "subtype3" "subtype4" "subtype8" "subtype4" "subtype4"
 [61] "subtype1" "subtype6" "subtype3" "subtype4" "subtype5" "subtype5"
 [67] "subtype5" "subtype4" "subtype8" "subtype5" "subtype6" "subtype5"
 [73] "subtype3" "subtype3" "subtype6" "subtype6" "subtype3" "subtype5"
 [79] "subtype8" "subtype4" "subtype8" "subtype8" "subtype2" "subtype4"
 [85] "subtype3" "subtype5" "subtype4" "subtype4" "subtype4" "subtype2"
 [91] "subtype1" "subtype1" "subtype6" "subtype4" "subtype6" "subtype6"
 [97] "subtype3" "subtype6" "subtype6" "subtype6" "subtype6" "subtype3"
[103] "subtype2" "subtype3" "subtype5" "subtype3" "subtype8" "subtype6"
[109] "subtype4" "subtype2" "subtype6" "subtype6" "subtype3" "subtype3"
[115] "subtype5" "subtype6" "subtype6" "subtype3" "subtype4" "subtype6"
[121] "subtype6" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[127] "subtype4" "subtype3" "subtype3" "subtype3" "subtype5" "subtype1"
[133] "subtype4" "subtype6" "subtype4" "subtype5" "subtype6" "subtype6"
[139] "subtype1" "subtype4" "subtype3" "subtype2" "subtype4" "subtype4"
[145] "subtype4" "subtype6" "subtype2" "subtype5" "subtype5" "subtype1"
[151] "subtype5" "subtype3" "subtype3" "subtype6" "subtype4" "subtype6"
[157] "subtype3" "subtype1" "subtype3" "subtype5" "subtype4" "subtype7"
[163] "subtype6" "subtype4" "subtype6" "subtype6" "subtype3" "subtype1"
[169] "subtype5" "subtype1" "subtype3" "subtype2" "subtype1" "subtype4"
[175] "subtype3" "subtype5" "subtype3" "subtype2" "subtype5" "subtype1"
[181] "subtype5" "subtype1" "subtype8" "subtype6" "subtype8" "subtype3"
[187] "subtype1" "subtype4" "subtype4" "subtype3" "subtype3" "subtype4"
[193] "subtype3" "subtype3" "subtype3" "subtype4" "subtype3" "subtype5"
[199] "subtype3" "subtype4" "subtype2" "subtype3" "subtype1" "subtype5"
D4V2, continuous
D4V3, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   17    5
  subtype2   16    4
  subtype3   45   10
  subtype4   23   17
  subtype5   26    8
  subtype6   26   10
  subtype7    3    1
  subtype8    5    4
D4V4, continuous
[1] "Remove cluster labels:" "subtype8"              
clus
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype8 
       3        4        7       11        7       10        2 
 [1] "subtype1" "subtype2" "subtype4" "subtype5" "subtype5" "subtype4"
 [7] "subtype6" "subtype6" "subtype5" "subtype4" "subtype6" "subtype2"
[13] "subtype4" "subtype3" "subtype2" "subtype4" "subtype5" "subtype3"
[19] "subtype3" "subtype3" "subtype4" "subtype4" "subtype1" "subtype6"
[25] "subtype3" "subtype4" "subtype5" "subtype5" "subtype4" "subtype6"
[31] "subtype6" "subtype3" "subtype6" "subtype6" "subtype5" "subtype6"
[37] "subtype4" "subtype2" "subtype4" "subtype6" "subtype1" "subtype3"
D4V5, multiclass
D4V6, multiclass
D4V7, multiclass
D4V8, multiclass
D4V9, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   22    0
  subtype2   18    2
  subtype3   55    0
  subtype4   38    2
  subtype5   33    1
  subtype6   35    1
  subtype7    4    0
  subtype8    9    0
D4V10, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   21    1
  subtype2   18    2
  subtype3   51    4
  subtype4   38    2
  subtype5   31    3
  subtype6   28    8
  subtype7    4    0
  subtype8    8    1

Clustering(5) Variable = MRNASEQ_CHIERARCHICAL
D5V1, survival
  [1] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [13] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [19] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [31] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [37] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [43] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
 [49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [55] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [61] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [67] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [85] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [91] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[103] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[115] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[121] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[127] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[133] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[139] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[145] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[151] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[157] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[163] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[169] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[175] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[187] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[193] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[199] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
  [1] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [13] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [19] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [31] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [37] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [43] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
 [49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [55] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [61] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [67] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [85] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [91] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[103] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[115] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[121] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[127] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[133] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[139] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[145] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[151] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[157] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[163] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[169] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[175] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[187] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[193] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[199] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
  [1] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [13] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [19] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [31] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [37] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [43] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
 [49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [55] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [61] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [67] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [85] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [91] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[103] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[115] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[121] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[127] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[133] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[139] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[145] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[151] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[157] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[163] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[169] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[175] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[187] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[193] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[199] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
D5V2, continuous
D5V3, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   40   25
  subtype2   59   15
  subtype3   62   19
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       25       15       19
  MALE         40       59       62
D5V4, continuous
D5V5, multiclass
D5V6, multiclass
D5V7, multiclass
D5V8, multiclass
D5V9, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   64    1
  subtype2   73    1
  subtype3   77    4
     clus
vv    subtype1 subtype2 subtype3
  NO         1        1        4
  YES       64       73       77
D5V10, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   58    7
  subtype2   67    7
  subtype3   74    7
     clus
vv    subtype1 subtype2 subtype3
  NO         7        7        7
  YES       58       67       74

Clustering(6) Variable = MIRSEQ_CNMF
D6V1, survival
  [1] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [13] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [19] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [31] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [43] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
 [49] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [55] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [61] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [67] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [85] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [91] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [97] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[103] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[109] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[115] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[121] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[127] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[133] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[139] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[145] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[151] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[157] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[163] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[169] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[175] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[181] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[187] "subtype2"
  [1] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [13] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [19] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [31] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [43] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
 [49] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [55] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [61] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [67] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [85] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [91] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [97] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[103] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[109] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[115] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[121] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[127] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[133] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[139] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[145] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[151] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[157] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[163] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[169] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[175] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[181] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[187] "subtype2"
  [1] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [13] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [19] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [31] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [43] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
 [49] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [55] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [61] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [67] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [85] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [91] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [97] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[103] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[109] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[115] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[121] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[127] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[133] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[139] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[145] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[151] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[157] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[163] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[169] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[175] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[181] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[187] "subtype2"
D6V2, continuous
D6V3, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   59   25
  subtype2   52   21
  subtype3   35   10
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       25       21       10
  MALE         59       52       35
D6V4, continuous
D6V5, multiclass
D6V6, multiclass
D6V7, multiclass
D6V8, multiclass
D6V9, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   81    3
  subtype2   72    1
  subtype3   43    2
     clus
vv    subtype1 subtype2 subtype3
  NO         3        1        2
  YES       81       72       43
D6V10, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   76    8
  subtype2   64    9
  subtype3   39    6
     clus
vv    subtype1 subtype2 subtype3
  NO         8        9        6
  YES       76       64       39

Clustering(7) Variable = MIRSEQ_CHIERARCHICAL
D7V1, survival
  [1] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [25] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
 [31] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [43] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
 [49] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [55] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [61] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [67] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
 [73] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
 [79] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [91] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [97] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[103] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[109] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[115] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[121] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[127] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[133] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[139] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
[145] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[151] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[157] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[163] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[169] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[175] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[181] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[187] "subtype1"
  [1] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [25] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
 [31] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [43] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
 [49] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [55] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [61] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [67] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
 [73] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
 [79] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [91] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [97] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[103] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[109] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[115] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[121] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[127] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[133] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[139] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
[145] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[151] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[157] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[163] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[169] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[175] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[181] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[187] "subtype1"
  [1] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [25] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
 [31] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [43] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
 [49] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [55] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [61] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [67] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
 [73] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
 [79] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [91] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [97] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[103] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[109] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[115] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[121] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[127] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[133] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[139] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
[145] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[151] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[157] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[163] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[169] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[175] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[181] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[187] "subtype1"
D7V2, continuous
D7V3, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   69   28
  subtype2   43   20
  subtype3   34    8
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       28       20        8
  MALE         69       43       34
D7V4, continuous
D7V5, multiclass
D7V6, multiclass
D7V7, multiclass
D7V8, multiclass
D7V9, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   97    0
  subtype2   59    4
  subtype3   40    2
     clus
vv    subtype1 subtype2 subtype3
  NO         0        4        2
  YES       97       59       40
D7V10, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   84   13
  subtype2   58    5
  subtype3   37    5
     clus
vv    subtype1 subtype2 subtype3
  NO        13        5        5
  YES       84       58       37
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
           "KARNOFSKY.PERFORMANCE.SCORE" 
                                      V5 
                     "HISTOLOGICAL.TYPE" 
                                      V6 
                           "PATHOLOGY.T" 
                                      V7 
                           "PATHOLOGY.N" 
                                      V8 
                   "PATHOLOGICSPREAD(M)" 
                                      V9 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                     V10 
                   "NEOADJUVANT.THERAPY" 
> q(save="no")
