# Created: Thu Jul 12 19:33:57 EDT 2012 by cgaadm_deadline
# Job: 126416    server:  http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/
# Module: MutSigPreprocess urn:lsid:broadinstitute.org:cancer.genome.analysis:00272:84
# Parameters: 
#    individual_set_id = OV
#    maf1 = dependentsValues498954522561830962.tsv   /gp/getFile.jsp?task=&file=cgaadm_deadline/Axis4055389052007823704.att_dependentsValues498954522561830962.tsv
#    maf2 = dependentsValues65448837254164083.tsv   /gp/getFile.jsp?task=&file=cgaadm_deadline/Axis5518839120639792122.att_dependentsValues65448837254164083.tsv
#    maf3 = dependentsValues3482851209573671999.tsv   /gp/getFile.jsp?task=&file=cgaadm_deadline/Axis6632721681844028874.att_dependentsValues3482851209573671999.tsv
#    maf4 = 
#    maflabel1 = Broad
#    maflabel2 = WashU
#    maflabel3 = Baylor
#    maflabel4 = 
#    wig1 = dependentsValues5164233516031246442.tsv   /gp/getFile.jsp?task=&file=cgaadm_deadline/Axis1459140923418438106.att_dependentsValues5164233516031246442.tsv
#    wig2 = dependentsValues5595232603203786896.tsv   /gp/getFile.jsp?task=&file=cgaadm_deadline/Axis2698374097970513895.att_dependentsValues5595232603203786896.tsv
#    wig3 = dependentsValues4189782422725886870.tsv   /gp/getFile.jsp?task=&file=cgaadm_deadline/Axis1169976384356243033.att_dependentsValues4189782422725886870.tsv
#    wig4 = 
#    build = hg18
#    context65_dir = /xchip/cga1/lawrence/db/context65
#    context65_wig = no_longer_needed
#    num_categories = 4
#    target_list = /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010_fix1.txt
#    paramfile = /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
