
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.32.3479/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.32.3479/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/133226/STAD.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/STAD/1445527/1.GDAC_clinicalDataPicker.Finished/STAD.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=159, in cluster file=133, common to both=132
[1] "Reduce the number of clustering variables from 48 to 37."
[1]  37 132
[1] "CIC MUTATION ANALYSIS"
[1] 3
  CIC MUTATED CIC WILD-TYPE 
           11           121 
  CIC MUTATED CIC WILD-TYPE 
           11           121 
[1] "HIST1H2AD MUTATION ANALYSIS"
[1] 3
  HIST1H2AD MUTATED HIST1H2AD WILD-TYPE 
                  3                 129 
  HIST1H2AD MUTATED HIST1H2AD WILD-TYPE 
                  3                 129 
[1] "MXRA5 MUTATION ANALYSIS"
[1] 3
  MXRA5 MUTATED MXRA5 WILD-TYPE 
             17             115 
  MXRA5 MUTATED MXRA5 WILD-TYPE 
             17             115 
[1] "OCEL1 MUTATION ANALYSIS"
[1] 3
  OCEL1 MUTATED OCEL1 WILD-TYPE 
              4             128 
  OCEL1 MUTATED OCEL1 WILD-TYPE 
              4             128 
[1] "OR10J1 MUTATION ANALYSIS"
[1] 3
  OR10J1 MUTATED OR10J1 WILD-TYPE 
               4              128 
  OR10J1 MUTATED OR10J1 WILD-TYPE 
               4              128 
[1] "BACH2 MUTATION ANALYSIS"
[1] 3
  BACH2 MUTATED BACH2 WILD-TYPE 
             10             122 
  BACH2 MUTATED BACH2 WILD-TYPE 
             10             122 
[1] "NPFF MUTATION ANALYSIS"
[1] 3
  NPFF MUTATED NPFF WILD-TYPE 
             3            129 
  NPFF MUTATED NPFF WILD-TYPE 
             3            129 
[1] "OR6C70 MUTATION ANALYSIS"
[1] 3
  OR6C70 MUTATED OR6C70 WILD-TYPE 
               4              128 
  OR6C70 MUTATED OR6C70 WILD-TYPE 
               4              128 
[1] "CCS MUTATION ANALYSIS"
[1] 3
  CCS MUTATED CCS WILD-TYPE 
            3           129 
  CCS MUTATED CCS WILD-TYPE 
            3           129 
[1] "TNNI2 MUTATION ANALYSIS"
[1] 3
  TNNI2 MUTATED TNNI2 WILD-TYPE 
              5             127 
  TNNI2 MUTATED TNNI2 WILD-TYPE 
              5             127 
[1] "PRKRA MUTATION ANALYSIS"
[1] 3
  PRKRA MUTATED PRKRA WILD-TYPE 
              3             129 
  PRKRA MUTATED PRKRA WILD-TYPE 
              3             129 
[1] "MS4A6A MUTATION ANALYSIS"
[1] 3
  MS4A6A MUTATED MS4A6A WILD-TYPE 
               3              129 
  MS4A6A MUTATED MS4A6A WILD-TYPE 
               3              129 
[1] "CCDC97 MUTATION ANALYSIS"
[1] 3
  CCDC97 MUTATED CCDC97 WILD-TYPE 
               3              129 
  CCDC97 MUTATED CCDC97 WILD-TYPE 
               3              129 
[1] "ZNF223 MUTATION ANALYSIS"
[1] 3
  ZNF223 MUTATED ZNF223 WILD-TYPE 
               4              128 
  ZNF223 MUTATED ZNF223 WILD-TYPE 
               4              128 
[1] "ZNF284 MUTATION ANALYSIS"
[1] 3
  ZNF284 MUTATED ZNF284 WILD-TYPE 
               3              129 
  ZNF284 MUTATED ZNF284 WILD-TYPE 
               3              129 
[1] "PCDHA6 MUTATION ANALYSIS"
[1] 3
  PCDHA6 MUTATED PCDHA6 WILD-TYPE 
              14              118 
  PCDHA6 MUTATED PCDHA6 WILD-TYPE 
              14              118 
[1] "ZDHHC23 MUTATION ANALYSIS"
[1] 3
  ZDHHC23 MUTATED ZDHHC23 WILD-TYPE 
                3               129 
  ZDHHC23 MUTATED ZDHHC23 WILD-TYPE 
                3               129 
[1] "DSCR4 MUTATION ANALYSIS"
[1] 3
  DSCR4 MUTATED DSCR4 WILD-TYPE 
              3             129 
  DSCR4 MUTATED DSCR4 WILD-TYPE 
              3             129 
[1] "GLT6D1 MUTATION ANALYSIS"
[1] 3
  GLT6D1 MUTATED GLT6D1 WILD-TYPE 
               3              129 
  GLT6D1 MUTATED GLT6D1 WILD-TYPE 
               3              129 
[1] "MAML1 MUTATION ANALYSIS"
[1] 3
  MAML1 MUTATED MAML1 WILD-TYPE 
              4             128 
  MAML1 MUTATED MAML1 WILD-TYPE 
              4             128 
[1] "NME5 MUTATION ANALYSIS"
[1] 3
  NME5 MUTATED NME5 WILD-TYPE 
             3            129 
  NME5 MUTATED NME5 WILD-TYPE 
             3            129 
[1] "RRAS MUTATION ANALYSIS"
[1] 3
  RRAS MUTATED RRAS WILD-TYPE 
             3            129 
  RRAS MUTATED RRAS WILD-TYPE 
             3            129 
[1] "USP48 MUTATION ANALYSIS"
[1] 3
  USP48 MUTATED USP48 WILD-TYPE 
              5             127 
  USP48 MUTATED USP48 WILD-TYPE 
              5             127 
[1] "LRRC55 MUTATION ANALYSIS"
[1] 3
  LRRC55 MUTATED LRRC55 WILD-TYPE 
               3              129 
  LRRC55 MUTATED LRRC55 WILD-TYPE 
               3              129 
[1] "MAPK15 MUTATION ANALYSIS"
[1] 3
  MAPK15 MUTATED MAPK15 WILD-TYPE 
               5              127 
  MAPK15 MUTATED MAPK15 WILD-TYPE 
               5              127 
[1] "RNF167 MUTATION ANALYSIS"
[1] 3
  RNF167 MUTATED RNF167 WILD-TYPE 
               4              128 
  RNF167 MUTATED RNF167 WILD-TYPE 
               4              128 
[1] "MOSC1 MUTATION ANALYSIS"
[1] 3
  MOSC1 MUTATED MOSC1 WILD-TYPE 
              3             129 
  MOSC1 MUTATED MOSC1 WILD-TYPE 
              3             129 
[1] "HOMEZ MUTATION ANALYSIS"
[1] 3
  HOMEZ MUTATED HOMEZ WILD-TYPE 
              4             128 
  HOMEZ MUTATED HOMEZ WILD-TYPE 
              4             128 
[1] "MSH5 MUTATION ANALYSIS"
[1] 3
  MSH5 MUTATED MSH5 WILD-TYPE 
             5            127 
  MSH5 MUTATED MSH5 WILD-TYPE 
             5            127 
[1] "FBXO24 MUTATION ANALYSIS"
[1] 3
  FBXO24 MUTATED FBXO24 WILD-TYPE 
               5              127 
  FBXO24 MUTATED FBXO24 WILD-TYPE 
               5              127 
[1] "UBE2Q1 MUTATION ANALYSIS"
[1] 3
  UBE2Q1 MUTATED UBE2Q1 WILD-TYPE 
               3              129 
  UBE2Q1 MUTATED UBE2Q1 WILD-TYPE 
               3              129 
[1] "WNT10A MUTATION ANALYSIS"
[1] 3
  WNT10A MUTATED WNT10A WILD-TYPE 
               3              129 
  WNT10A MUTATED WNT10A WILD-TYPE 
               3              129 
[1] "PRSS1 MUTATION ANALYSIS"
[1] 3
  PRSS1 MUTATED PRSS1 WILD-TYPE 
              3             129 
  PRSS1 MUTATED PRSS1 WILD-TYPE 
              3             129 
[1] "PCDHB9 MUTATION ANALYSIS"
[1] 3
  PCDHB9 MUTATED PCDHB9 WILD-TYPE 
              10              122 
  PCDHB9 MUTATED PCDHB9 WILD-TYPE 
              10              122 
[1] "EDF1 MUTATION ANALYSIS"
[1] 3
  EDF1 MUTATED EDF1 WILD-TYPE 
             3            129 
  EDF1 MUTATED EDF1 WILD-TYPE 
             3            129 
[1] "CLEC4F MUTATION ANALYSIS"
[1] 3
  CLEC4F MUTATED CLEC4F WILD-TYPE 
               4              128 
  CLEC4F MUTATED CLEC4F WILD-TYPE 
               4              128 
[1] "GPR146 MUTATION ANALYSIS"
[1] 3
  GPR146 MUTATED GPR146 WILD-TYPE 
               4              128 
  GPR146 MUTATED GPR146 WILD-TYPE 
               4              128 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "HISTOLOGICALTYPE"                      
[10] "PATHOLOGICSPREAD(PT)"                  
[11] "PATHOLOGICSPREAD(PN)"                  
[12] "PATHOLOGICSPREAD(M)"                   
[13] "RADIATIONS.RADIATION.REGIMENINDICATION"
[14] "NEOADJUVANTTHERAPY"                    
[15] "BATCHNUMBER"                           

Input Data has 15 rows and 132 columns.

[1] "Batch" "15"   
[1] "Last Follow UP"
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-4183 TCGA-BR-4184 TCGA-BR-4187 TCGA-BR-4188 
         171            3           NA           NA           NA           NA 
TCGA-BR-4190 TCGA-BR-4191 TCGA-BR-4194 TCGA-BR-4195 TCGA-BR-4199 TCGA-BR-4200 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4201 TCGA-BR-4253 TCGA-BR-4255 TCGA-BR-4256 TCGA-BR-4257 TCGA-BR-4259 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4261 TCGA-BR-4265 TCGA-BR-4267 TCGA-BR-4277 TCGA-BR-4278 TCGA-BR-4279 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4280 TCGA-BR-4281 TCGA-BR-4284 TCGA-BR-4291 TCGA-BR-4292 TCGA-BR-4294 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4298 TCGA-BR-4357 TCGA-BR-4361 TCGA-BR-4362 TCGA-BR-4363 TCGA-BR-4366 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4367 TCGA-BR-4368 TCGA-BR-4369 TCGA-BR-4370 TCGA-BR-4371 TCGA-BR-4375 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4376 TCGA-BR-6452 TCGA-BR-6453 TCGA-BR-6454 TCGA-BR-6455 TCGA-BR-6456 
          NA           29           NA           NA           43           NA 
TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 
          41           41           25           19           19           52 
TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 
          66           30           37           20           34           23 
TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 
          20            8           25           21           11           15 
TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 
           9            2           12          609           92          822 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 
         485           31         1611          245         1644          122 
TCGA-CG-4441 TCGA-CG-4442 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
         426           NA          912         1431          580          366 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 
         669           31          273          576          215          365 
TCGA-CG-4474 TCGA-CG-4475 TCGA-CG-4476 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
          31           NA           NA           31           31          211 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
          31           31           30          182           29         2131 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
         366          457          881          944         1980          122 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
        1674          641          243          263          109          138 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
         298          476          293          249          210           21 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 
         181          201          126           51          111          143 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
         123           89          130           19          199           61 
Variable 1:'AGE':	nDistinctValues=44,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=14,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=70,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=9,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'HISTOLOGICAL.TYPE':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'PATHOLOGY.T':	nDistinctValues=10,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'PATHOLOGY.N':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGICSPREAD(M)':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 14:'NEOADJUVANT.THERAPY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'BATCH.NUMBER':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                 "GENDER"              "HISTOLOGICAL.TYPE"  
[4] "PATHOLOGY.T"         "PATHOLOGY.N"         "PATHOLOGICSPREAD(M)"
[7] "NEOADJUVANT.THERAPY"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "4"          
[1] "PATHOLOGY.N" "5"          
Output Data has 132 columns, 1 survival variables, and 7 non-survival variables.
AGE, nv=44, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=6, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
T1 T2 T3 T4 
 4 46 46 15 
[1] "table(vv)"
vv
T1 T2 T3 T4 
 4 46 46 15 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
T1 T2 T3 T4 
 4 46 46 15 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


T1 T2 T3 T4 
 4 46 46 15 
PATHOLOGY.N, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
N0 N1 N2 N3 
35 47 20 12 
[1] "table(vv)"
vv
N0 N1 N2 N3 
35 47 20 12 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
N0 N1 N2 N3 
35 47 20 12 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


N0 N1 N2 N3 
35 47 20 12 
PATHOLOGICSPREAD(M), nv=3, binary=FALSE, numeric=FALSE
NEOADJUVANT.THERAPY, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = CIC MUTATION ANALYSIS
D1V1, survival
   TCGA-B7-5816    TCGA-B7-5818    TCGA-BR-6452    TCGA-BR-6455    TCGA-BR-6457 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-BR-6458    TCGA-BR-6564    TCGA-BR-6565    TCGA-BR-6566    TCGA-BR-6705 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-BR-6706    TCGA-BR-6707    TCGA-BR-6709    TCGA-BR-6710    TCGA-BR-6801 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-BR-6802    TCGA-BR-6803    TCGA-BR-6852    TCGA-CD-5798    TCGA-CD-5799 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-CD-5800    TCGA-CD-5801    TCGA-CD-5802    TCGA-CD-5803    TCGA-CD-5813 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-CG-4300    TCGA-CG-4301    TCGA-CG-4304    TCGA-CG-4305    TCGA-CG-4306 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-CG-4436    TCGA-CG-4437    TCGA-CG-4438    TCGA-CG-4440    TCGA-CG-4441 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-CG-4443    TCGA-CG-4444    TCGA-CG-4449    TCGA-CG-4455    TCGA-CG-4460 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-CG-4462    TCGA-CG-4465    TCGA-CG-4466    TCGA-CG-4469    TCGA-CG-4472 
"CIC WILD-TYPE"   "CIC MUTATED" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-CG-4474    TCGA-CG-4477    TCGA-CG-5716    TCGA-CG-5717    TCGA-CG-5718 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-CG-5719    TCGA-CG-5720    TCGA-CG-5721    TCGA-CG-5722    TCGA-CG-5723 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-CG-5724    TCGA-CG-5725    TCGA-CG-5726    TCGA-CG-5727    TCGA-CG-5728 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-CG-5730    TCGA-CG-5732    TCGA-CG-5733    TCGA-CG-5734    TCGA-D7-5577 
"CIC WILD-TYPE" "CIC WILD-TYPE"   "CIC MUTATED" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-D7-5578    TCGA-D7-5579    TCGA-D7-6518    TCGA-D7-6519    TCGA-D7-6520 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-D7-6521    TCGA-D7-6522    TCGA-D7-6524    TCGA-D7-6525    TCGA-D7-6526 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-D7-6527    TCGA-D7-6528    TCGA-D7-6815    TCGA-D7-6817    TCGA-D7-6818 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-D7-6820    TCGA-D7-6822    TCGA-EQ-5647    TCGA-F1-6177    TCGA-F1-6874 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE"   "CIC MUTATED"   "CIC MUTATED" 
   TCGA-B7-5816    TCGA-B7-5818    TCGA-BR-6452    TCGA-BR-6455    TCGA-BR-6457 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-BR-6458    TCGA-BR-6564    TCGA-BR-6565    TCGA-BR-6566    TCGA-BR-6705 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-BR-6706    TCGA-BR-6707    TCGA-BR-6709    TCGA-BR-6710    TCGA-BR-6801 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-BR-6802    TCGA-BR-6803    TCGA-BR-6852    TCGA-CD-5798    TCGA-CD-5799 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-CD-5800    TCGA-CD-5801    TCGA-CD-5802    TCGA-CD-5803    TCGA-CD-5813 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-CG-4300    TCGA-CG-4301    TCGA-CG-4304    TCGA-CG-4305    TCGA-CG-4306 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-CG-4436    TCGA-CG-4437    TCGA-CG-4438    TCGA-CG-4440    TCGA-CG-4441 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-CG-4443    TCGA-CG-4444    TCGA-CG-4449    TCGA-CG-4455    TCGA-CG-4460 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-CG-4462    TCGA-CG-4465    TCGA-CG-4466    TCGA-CG-4469    TCGA-CG-4472 
"CIC WILD-TYPE"   "CIC MUTATED" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-CG-4474    TCGA-CG-4477    TCGA-CG-5716    TCGA-CG-5717    TCGA-CG-5718 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-CG-5719    TCGA-CG-5720    TCGA-CG-5721    TCGA-CG-5722    TCGA-CG-5723 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-CG-5724    TCGA-CG-5725    TCGA-CG-5726    TCGA-CG-5727    TCGA-CG-5728 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-CG-5730    TCGA-CG-5732    TCGA-CG-5733    TCGA-CG-5734    TCGA-D7-5577 
"CIC WILD-TYPE" "CIC WILD-TYPE"   "CIC MUTATED" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-D7-5578    TCGA-D7-5579    TCGA-D7-6518    TCGA-D7-6519    TCGA-D7-6520 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-D7-6521    TCGA-D7-6522    TCGA-D7-6524    TCGA-D7-6525    TCGA-D7-6526 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-D7-6527    TCGA-D7-6528    TCGA-D7-6815    TCGA-D7-6817    TCGA-D7-6818 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-D7-6820    TCGA-D7-6822    TCGA-EQ-5647    TCGA-F1-6177    TCGA-F1-6874 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE"   "CIC MUTATED"   "CIC MUTATED" 
   TCGA-B7-5816    TCGA-B7-5818    TCGA-BR-6452    TCGA-BR-6455    TCGA-BR-6457 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-BR-6458    TCGA-BR-6564    TCGA-BR-6565    TCGA-BR-6566    TCGA-BR-6705 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-BR-6706    TCGA-BR-6707    TCGA-BR-6709    TCGA-BR-6710    TCGA-BR-6801 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-BR-6802    TCGA-BR-6803    TCGA-BR-6852    TCGA-CD-5798    TCGA-CD-5799 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-CD-5800    TCGA-CD-5801    TCGA-CD-5802    TCGA-CD-5803    TCGA-CD-5813 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-CG-4300    TCGA-CG-4301    TCGA-CG-4304    TCGA-CG-4305    TCGA-CG-4306 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-CG-4436    TCGA-CG-4437    TCGA-CG-4438    TCGA-CG-4440    TCGA-CG-4441 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-CG-4443    TCGA-CG-4444    TCGA-CG-4449    TCGA-CG-4455    TCGA-CG-4460 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-CG-4462    TCGA-CG-4465    TCGA-CG-4466    TCGA-CG-4469    TCGA-CG-4472 
"CIC WILD-TYPE"   "CIC MUTATED" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-CG-4474    TCGA-CG-4477    TCGA-CG-5716    TCGA-CG-5717    TCGA-CG-5718 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-CG-5719    TCGA-CG-5720    TCGA-CG-5721    TCGA-CG-5722    TCGA-CG-5723 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-CG-5724    TCGA-CG-5725    TCGA-CG-5726    TCGA-CG-5727    TCGA-CG-5728 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-CG-5730    TCGA-CG-5732    TCGA-CG-5733    TCGA-CG-5734    TCGA-D7-5577 
"CIC WILD-TYPE" "CIC WILD-TYPE"   "CIC MUTATED" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-D7-5578    TCGA-D7-5579    TCGA-D7-6518    TCGA-D7-6519    TCGA-D7-6520 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-D7-6521    TCGA-D7-6522    TCGA-D7-6524    TCGA-D7-6525    TCGA-D7-6526 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-D7-6527    TCGA-D7-6528    TCGA-D7-6815    TCGA-D7-6817    TCGA-D7-6818 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE" 
   TCGA-D7-6820    TCGA-D7-6822    TCGA-EQ-5647    TCGA-F1-6177    TCGA-F1-6874 
"CIC WILD-TYPE" "CIC WILD-TYPE" "CIC WILD-TYPE"   "CIC MUTATED"   "CIC MUTATED" 
[1] "hr=" "3"  
D1V2, continuous
D1V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  CIC MUTATED      7    4
  CIC WILD-TYPE   46   75
        clus
vv       CIC MUTATED CIC WILD-TYPE
  FEMALE           7            46
  MALE             4            75
D1V4, multiclass
D1V5, multiclass
    clus
vv   CIC MUTATED CIC WILD-TYPE
  T1           1             3
  T2           3            43
  T3           4            42
  T4           2            13
D1V6, multiclass
    clus
vv   CIC MUTATED CIC WILD-TYPE
  N0           1            34
  N1           4            43
  N2           3            17
  N3           1            11
D1V7, multiclass
    clus
vv   CIC MUTATED CIC WILD-TYPE
  M0           7           108
  M1           1            12
  MX           3             1
D1V8, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  CIC MUTATED     11    0
  CIC WILD-TYPE  114    7
     clus
vv    CIC MUTATED CIC WILD-TYPE
  NO            0             7
  YES          11           114

Clustering(2) Variable = HIST1H2AD MUTATION ANALYSIS
D2V1, survival
         TCGA-B7-5816          TCGA-B7-5818          TCGA-BR-6452 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-BR-6455          TCGA-BR-6457          TCGA-BR-6458 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-BR-6564          TCGA-BR-6565          TCGA-BR-6566 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-BR-6705          TCGA-BR-6706          TCGA-BR-6707 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-BR-6709          TCGA-BR-6710          TCGA-BR-6801 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-BR-6802          TCGA-BR-6803          TCGA-BR-6852 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CD-5798          TCGA-CD-5799          TCGA-CD-5800 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CD-5801          TCGA-CD-5802          TCGA-CD-5803 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CD-5813          TCGA-CG-4300          TCGA-CG-4301 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-4304          TCGA-CG-4305          TCGA-CG-4306 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-4436          TCGA-CG-4437          TCGA-CG-4438 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-4440          TCGA-CG-4441          TCGA-CG-4443 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-4444          TCGA-CG-4449          TCGA-CG-4455 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-4460          TCGA-CG-4462          TCGA-CG-4465 
  "HIST1H2AD MUTATED" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-4466          TCGA-CG-4469          TCGA-CG-4472 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-4474          TCGA-CG-4477          TCGA-CG-5716 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-5717          TCGA-CG-5718          TCGA-CG-5719 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-5720          TCGA-CG-5721          TCGA-CG-5722 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-5723          TCGA-CG-5724          TCGA-CG-5725 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-5726          TCGA-CG-5727          TCGA-CG-5728 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-5730          TCGA-CG-5732          TCGA-CG-5733 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-5734          TCGA-D7-5577          TCGA-D7-5578 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-D7-5579          TCGA-D7-6518          TCGA-D7-6519 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-D7-6520          TCGA-D7-6521          TCGA-D7-6522 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-D7-6524          TCGA-D7-6525          TCGA-D7-6526 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-D7-6527          TCGA-D7-6528          TCGA-D7-6815 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-D7-6817          TCGA-D7-6818          TCGA-D7-6820 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-D7-6822          TCGA-EQ-5647          TCGA-F1-6177 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-F1-6874 
"HIST1H2AD WILD-TYPE" 
         TCGA-B7-5816          TCGA-B7-5818          TCGA-BR-6452 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-BR-6455          TCGA-BR-6457          TCGA-BR-6458 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-BR-6564          TCGA-BR-6565          TCGA-BR-6566 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-BR-6705          TCGA-BR-6706          TCGA-BR-6707 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-BR-6709          TCGA-BR-6710          TCGA-BR-6801 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-BR-6802          TCGA-BR-6803          TCGA-BR-6852 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CD-5798          TCGA-CD-5799          TCGA-CD-5800 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CD-5801          TCGA-CD-5802          TCGA-CD-5803 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CD-5813          TCGA-CG-4300          TCGA-CG-4301 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-4304          TCGA-CG-4305          TCGA-CG-4306 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-4436          TCGA-CG-4437          TCGA-CG-4438 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-4440          TCGA-CG-4441          TCGA-CG-4443 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-4444          TCGA-CG-4449          TCGA-CG-4455 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-4460          TCGA-CG-4462          TCGA-CG-4465 
  "HIST1H2AD MUTATED" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-4466          TCGA-CG-4469          TCGA-CG-4472 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-4474          TCGA-CG-4477          TCGA-CG-5716 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-5717          TCGA-CG-5718          TCGA-CG-5719 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-5720          TCGA-CG-5721          TCGA-CG-5722 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-5723          TCGA-CG-5724          TCGA-CG-5725 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-5726          TCGA-CG-5727          TCGA-CG-5728 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-5730          TCGA-CG-5732          TCGA-CG-5733 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-5734          TCGA-D7-5577          TCGA-D7-5578 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-D7-5579          TCGA-D7-6518          TCGA-D7-6519 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-D7-6520          TCGA-D7-6521          TCGA-D7-6522 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-D7-6524          TCGA-D7-6525          TCGA-D7-6526 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-D7-6527          TCGA-D7-6528          TCGA-D7-6815 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-D7-6817          TCGA-D7-6818          TCGA-D7-6820 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-D7-6822          TCGA-EQ-5647          TCGA-F1-6177 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-F1-6874 
"HIST1H2AD WILD-TYPE" 
         TCGA-B7-5816          TCGA-B7-5818          TCGA-BR-6452 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-BR-6455          TCGA-BR-6457          TCGA-BR-6458 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-BR-6564          TCGA-BR-6565          TCGA-BR-6566 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-BR-6705          TCGA-BR-6706          TCGA-BR-6707 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-BR-6709          TCGA-BR-6710          TCGA-BR-6801 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-BR-6802          TCGA-BR-6803          TCGA-BR-6852 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CD-5798          TCGA-CD-5799          TCGA-CD-5800 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CD-5801          TCGA-CD-5802          TCGA-CD-5803 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CD-5813          TCGA-CG-4300          TCGA-CG-4301 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-4304          TCGA-CG-4305          TCGA-CG-4306 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-4436          TCGA-CG-4437          TCGA-CG-4438 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-4440          TCGA-CG-4441          TCGA-CG-4443 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-4444          TCGA-CG-4449          TCGA-CG-4455 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-4460          TCGA-CG-4462          TCGA-CG-4465 
  "HIST1H2AD MUTATED" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-4466          TCGA-CG-4469          TCGA-CG-4472 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-4474          TCGA-CG-4477          TCGA-CG-5716 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-5717          TCGA-CG-5718          TCGA-CG-5719 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-5720          TCGA-CG-5721          TCGA-CG-5722 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-5723          TCGA-CG-5724          TCGA-CG-5725 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-5726          TCGA-CG-5727          TCGA-CG-5728 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-5730          TCGA-CG-5732          TCGA-CG-5733 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-5734          TCGA-D7-5577          TCGA-D7-5578 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-D7-5579          TCGA-D7-6518          TCGA-D7-6519 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-D7-6520          TCGA-D7-6521          TCGA-D7-6522 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-D7-6524          TCGA-D7-6525          TCGA-D7-6526 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-D7-6527          TCGA-D7-6528          TCGA-D7-6815 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-D7-6817          TCGA-D7-6818          TCGA-D7-6820 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-D7-6822          TCGA-EQ-5647          TCGA-F1-6177 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-F1-6874 
"HIST1H2AD WILD-TYPE" 
[1] "Remove cluster labels:" "HIST1H2AD MUTATED"     
clus
  HIST1H2AD MUTATED HIST1H2AD WILD-TYPE 
                  1                  84 
         TCGA-B7-5816          TCGA-B7-5818          TCGA-BR-6452 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-BR-6455          TCGA-BR-6457          TCGA-BR-6458 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-BR-6564          TCGA-BR-6565          TCGA-BR-6566 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-BR-6705          TCGA-BR-6706          TCGA-BR-6707 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-BR-6709          TCGA-BR-6710          TCGA-BR-6801 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-BR-6802          TCGA-BR-6803          TCGA-BR-6852 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CD-5798          TCGA-CD-5799          TCGA-CD-5800 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CD-5801          TCGA-CD-5802          TCGA-CD-5803 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CD-5813          TCGA-CG-4300          TCGA-CG-4301 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-4304          TCGA-CG-4305          TCGA-CG-4306 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-4436          TCGA-CG-4437          TCGA-CG-4438 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-4440          TCGA-CG-4441          TCGA-CG-4443 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-4444          TCGA-CG-4449          TCGA-CG-4455 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-4462          TCGA-CG-4465          TCGA-CG-4466 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-4469          TCGA-CG-4472          TCGA-CG-4474 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-4477          TCGA-CG-5716          TCGA-CG-5717 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-5718          TCGA-CG-5719          TCGA-CG-5720 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-5721          TCGA-CG-5722          TCGA-CG-5723 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-5724          TCGA-CG-5725          TCGA-CG-5726 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-5727          TCGA-CG-5728          TCGA-CG-5730 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-5732          TCGA-CG-5733          TCGA-CG-5734 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-D7-5577          TCGA-D7-5578          TCGA-D7-5579 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-D7-6518          TCGA-D7-6519          TCGA-D7-6520 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-D7-6521          TCGA-D7-6522          TCGA-D7-6524 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-D7-6525          TCGA-D7-6526          TCGA-D7-6527 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-D7-6528          TCGA-D7-6815          TCGA-D7-6817 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-D7-6818          TCGA-D7-6820          TCGA-D7-6822 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-EQ-5647          TCGA-F1-6177          TCGA-F1-6874 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
D2V2, continuous
D2V3, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  HIST1H2AD MUTATED      2    1
  HIST1H2AD WILD-TYPE   51   78
        clus
vv       HIST1H2AD MUTATED HIST1H2AD WILD-TYPE
  FEMALE                 2                  51
  MALE                   1                  78
D2V4, multiclass
D2V5, multiclass
    clus
vv   HIST1H2AD MUTATED HIST1H2AD WILD-TYPE
  T1                 0                   4
  T2                 0                  46
  T3                 2                  44
  T4                 1                  14
D2V6, multiclass
[1] "Remove cluster labels:" "HIST1H2AD MUTATED"     
clus
  HIST1H2AD MUTATED HIST1H2AD WILD-TYPE 
                  2                 112 
         TCGA-B7-5816          TCGA-B7-5818          TCGA-BR-4183 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-BR-4184          TCGA-BR-4188          TCGA-BR-4190 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-BR-4191          TCGA-BR-4195          TCGA-BR-4199 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-BR-4200          TCGA-BR-4253          TCGA-BR-4256 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-BR-4261          TCGA-BR-4267          TCGA-BR-4278 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-BR-4279          TCGA-BR-4280          TCGA-BR-4281 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-BR-4298          TCGA-BR-4361          TCGA-BR-4362 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-BR-4367          TCGA-BR-4368          TCGA-BR-4376 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-BR-6452          TCGA-BR-6453          TCGA-BR-6454 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-BR-6455          TCGA-BR-6456          TCGA-BR-6457 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-BR-6458          TCGA-BR-6564          TCGA-BR-6565 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-BR-6566          TCGA-BR-6705          TCGA-BR-6706 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-BR-6707          TCGA-BR-6709          TCGA-BR-6710 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-BR-6801          TCGA-BR-6802          TCGA-BR-6803 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-BR-6852          TCGA-CD-5798          TCGA-CD-5799 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CD-5800          TCGA-CD-5801          TCGA-CD-5802 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CD-5803          TCGA-CD-5813          TCGA-CG-4300 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-4301          TCGA-CG-4304          TCGA-CG-4305 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-4306          TCGA-CG-4436          TCGA-CG-4437 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-4438          TCGA-CG-4440          TCGA-CG-4441 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-4442          TCGA-CG-4443          TCGA-CG-4444 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-4449          TCGA-CG-4455          TCGA-CG-4462 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-4465          TCGA-CG-4466          TCGA-CG-4469 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-4472          TCGA-CG-4474          TCGA-CG-4475 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-4476          TCGA-CG-4477          TCGA-CG-5716 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-5717          TCGA-CG-5718          TCGA-CG-5719 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-5720          TCGA-CG-5721          TCGA-CG-5722 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-5723          TCGA-CG-5724          TCGA-CG-5725 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-5726          TCGA-CG-5727          TCGA-CG-5728 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-5730          TCGA-CG-5732          TCGA-CG-5733 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-CG-5734          TCGA-D7-5577          TCGA-D7-5578 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-D7-5579          TCGA-D7-6518          TCGA-D7-6519 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-D7-6520          TCGA-D7-6521          TCGA-D7-6522 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-D7-6524          TCGA-D7-6525          TCGA-D7-6526 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-D7-6527          TCGA-D7-6528          TCGA-D7-6815 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-D7-6817          TCGA-D7-6818          TCGA-D7-6820 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-D7-6822          TCGA-EQ-5647          TCGA-F1-6177 
"HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" "HIST1H2AD WILD-TYPE" 
         TCGA-F1-6874 
"HIST1H2AD WILD-TYPE" 
D2V7, multiclass
    clus
vv   HIST1H2AD MUTATED HIST1H2AD WILD-TYPE
  M0                 1                 114
  M1                 1                  12
  MX                 1                   3
D2V8, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  HIST1H2AD MUTATED      3    0
  HIST1H2AD WILD-TYPE  122    7
     clus
vv    HIST1H2AD MUTATED HIST1H2AD WILD-TYPE
  NO                  0                   7
  YES                 3                 122

Clustering(3) Variable = MXRA5 MUTATION ANALYSIS
D3V1, survival
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE"   "MXRA5 MUTATED" "MXRA5 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"MXRA5 WILD-TYPE"   "MXRA5 MUTATED" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
  "MXRA5 MUTATED" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE"   "MXRA5 MUTATED" "MXRA5 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "MXRA5 MUTATED" "MXRA5 WILD-TYPE"   "MXRA5 MUTATED" "MXRA5 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE"   "MXRA5 MUTATED" "MXRA5 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-F1-6874 
"MXRA5 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE"   "MXRA5 MUTATED" "MXRA5 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"MXRA5 WILD-TYPE"   "MXRA5 MUTATED" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
  "MXRA5 MUTATED" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE"   "MXRA5 MUTATED" "MXRA5 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "MXRA5 MUTATED" "MXRA5 WILD-TYPE"   "MXRA5 MUTATED" "MXRA5 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE"   "MXRA5 MUTATED" "MXRA5 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-F1-6874 
"MXRA5 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE"   "MXRA5 MUTATED" "MXRA5 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"MXRA5 WILD-TYPE"   "MXRA5 MUTATED" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
  "MXRA5 MUTATED" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE"   "MXRA5 MUTATED" "MXRA5 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "MXRA5 MUTATED" "MXRA5 WILD-TYPE"   "MXRA5 MUTATED" "MXRA5 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE"   "MXRA5 MUTATED" "MXRA5 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" "MXRA5 WILD-TYPE" 
     TCGA-F1-6874 
"MXRA5 WILD-TYPE" 
[1] "hr=" "1.6"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MXRA5 MUTATED      9    8
  MXRA5 WILD-TYPE   44   71
        clus
vv       MXRA5 MUTATED MXRA5 WILD-TYPE
  FEMALE             9              44
  MALE               8              71
D3V4, multiclass
D3V5, multiclass
    clus
vv   MXRA5 MUTATED MXRA5 WILD-TYPE
  T1             1               3
  T2             4              42
  T3             7              39
  T4             2              13
D3V6, multiclass
    clus
vv   MXRA5 MUTATED MXRA5 WILD-TYPE
  N0             7              28
  N1             6              41
  N2             2              18
  N3             0              12
D3V7, multiclass
    clus
vv   MXRA5 MUTATED MXRA5 WILD-TYPE
  M0            16              99
  M1             0              13
  MX             1               3
D3V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MXRA5 MUTATED     17    0
  MXRA5 WILD-TYPE  108    7
     clus
vv    MXRA5 MUTATED MXRA5 WILD-TYPE
  NO              0               7
  YES            17             108

Clustering(4) Variable = OCEL1 MUTATION ANALYSIS
D4V1, survival
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE"   "OCEL1 MUTATED" "OCEL1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE"   "OCEL1 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE"   "OCEL1 MUTATED" 
     TCGA-F1-6874 
"OCEL1 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE"   "OCEL1 MUTATED" "OCEL1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE"   "OCEL1 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE"   "OCEL1 MUTATED" 
     TCGA-F1-6874 
"OCEL1 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE"   "OCEL1 MUTATED" "OCEL1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE"   "OCEL1 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE" "OCEL1 WILD-TYPE"   "OCEL1 MUTATED" 
     TCGA-F1-6874 
"OCEL1 WILD-TYPE" 
[1] "hr=" "1.7"
D4V2, continuous
D4V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OCEL1 MUTATED      3    1
  OCEL1 WILD-TYPE   50   78
        clus
vv       OCEL1 MUTATED OCEL1 WILD-TYPE
  FEMALE             3              50
  MALE               1              78
D4V4, multiclass
D4V5, multiclass
    clus
vv   OCEL1 MUTATED OCEL1 WILD-TYPE
  T1             1               3
  T2             0              46
  T3             1              45
  T4             1              14
D4V6, multiclass
    clus
vv   OCEL1 MUTATED OCEL1 WILD-TYPE
  N0             1              34
  N1             3              44
  N2             0              20
  N3             0              12
D4V7, multiclass
    clus
vv   OCEL1 MUTATED OCEL1 WILD-TYPE
  M0             2             113
  M1             1              12
  MX             1               3
D4V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OCEL1 MUTATED      4    0
  OCEL1 WILD-TYPE  121    7
     clus
vv    OCEL1 MUTATED OCEL1 WILD-TYPE
  NO              0               7
  YES             4             121

Clustering(5) Variable = OR10J1 MUTATION ANALYSIS
D5V1, survival
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
  "OR10J1 MUTATED" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
  "OR10J1 MUTATED" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE"   "OR10J1 MUTATED" "OR10J1 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-F1-6874 
"OR10J1 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
  "OR10J1 MUTATED" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
  "OR10J1 MUTATED" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE"   "OR10J1 MUTATED" "OR10J1 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-F1-6874 
"OR10J1 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
  "OR10J1 MUTATED" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
  "OR10J1 MUTATED" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE"   "OR10J1 MUTATED" "OR10J1 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" "OR10J1 WILD-TYPE" 
      TCGA-F1-6874 
"OR10J1 WILD-TYPE" 
[1] "hr="     "7.3e+07"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10J1 MUTATED      1    3
  OR10J1 WILD-TYPE   52   76
        clus
vv       OR10J1 MUTATED OR10J1 WILD-TYPE
  FEMALE              1               52
  MALE                3               76
D5V4, multiclass
D5V5, multiclass
    clus
vv   OR10J1 MUTATED OR10J1 WILD-TYPE
  T1              0                4
  T2              0               46
  T3              2               44
  T4              2               13
D5V6, multiclass
    clus
vv   OR10J1 MUTATED OR10J1 WILD-TYPE
  N0              1               34
  N1              1               46
  N2              2               18
  N3              0               12
D5V7, multiclass
    clus
vv   OR10J1 MUTATED OR10J1 WILD-TYPE
  M0              3              112
  M1              0               13
  MX              1                3
D5V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10J1 MUTATED      3    1
  OR10J1 WILD-TYPE  122    6
     clus
vv    OR10J1 MUTATED OR10J1 WILD-TYPE
  NO               1                6
  YES              3              122

Clustering(6) Variable = BACH2 MUTATION ANALYSIS
D6V1, survival
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE"   "BACH2 MUTATED" "BACH2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "BACH2 MUTATED" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE"   "BACH2 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-F1-6874 
  "BACH2 MUTATED" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE"   "BACH2 MUTATED" "BACH2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "BACH2 MUTATED" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE"   "BACH2 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-F1-6874 
  "BACH2 MUTATED" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE"   "BACH2 MUTATED" "BACH2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "BACH2 MUTATED" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE"   "BACH2 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" "BACH2 WILD-TYPE" 
     TCGA-F1-6874 
  "BACH2 MUTATED" 
[1] "hr="     "7.3e+07"
D6V2, continuous
D6V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BACH2 MUTATED      5    5
  BACH2 WILD-TYPE   48   74
        clus
vv       BACH2 MUTATED BACH2 WILD-TYPE
  FEMALE             5              48
  MALE               5              74
D6V4, multiclass
D6V5, multiclass
    clus
vv   BACH2 MUTATED BACH2 WILD-TYPE
  T1             1               3
  T2             4              42
  T3             3              43
  T4             2              13
D6V6, multiclass
    clus
vv   BACH2 MUTATED BACH2 WILD-TYPE
  N0             5              30
  N1             3              44
  N2             0              20
  N3             0              12
D6V7, multiclass
    clus
vv   BACH2 MUTATED BACH2 WILD-TYPE
  M0             9             106
  M1             0              13
  MX             1               3
D6V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BACH2 MUTATED     10    0
  BACH2 WILD-TYPE  115    7
     clus
vv    BACH2 MUTATED BACH2 WILD-TYPE
  NO              0               7
  YES            10             115

Clustering(7) Variable = NPFF MUTATION ANALYSIS
D7V1, survival
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"NPFF WILD-TYPE" "NPFF WILD-TYPE"   "NPFF MUTATED" "NPFF WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"NPFF WILD-TYPE" "NPFF WILD-TYPE"   "NPFF MUTATED" "NPFF WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"NPFF WILD-TYPE"   "NPFF MUTATED" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-F1-6874 
"NPFF WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"NPFF WILD-TYPE" "NPFF WILD-TYPE"   "NPFF MUTATED" "NPFF WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"NPFF WILD-TYPE" "NPFF WILD-TYPE"   "NPFF MUTATED" "NPFF WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"NPFF WILD-TYPE"   "NPFF MUTATED" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-F1-6874 
"NPFF WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"NPFF WILD-TYPE" "NPFF WILD-TYPE"   "NPFF MUTATED" "NPFF WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"NPFF WILD-TYPE" "NPFF WILD-TYPE"   "NPFF MUTATED" "NPFF WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"NPFF WILD-TYPE"   "NPFF MUTATED" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" "NPFF WILD-TYPE" 
    TCGA-F1-6874 
"NPFF WILD-TYPE" 
[1] "hr="     "7.3e+07"
D7V2, continuous
D7V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NPFF MUTATED      1    2
  NPFF WILD-TYPE   52   77
        clus
vv       NPFF MUTATED NPFF WILD-TYPE
  FEMALE            1             52
  MALE              2             77
D7V4, multiclass
D7V5, multiclass
    clus
vv   NPFF MUTATED NPFF WILD-TYPE
  T1            0              4
  T2            0             46
  T3            3             43
  T4            0             15
D7V6, multiclass
    clus
vv   NPFF MUTATED NPFF WILD-TYPE
  N0            2             33
  N1            0             47
  N2            1             19
  N3            0             12
D7V7, multiclass
    clus
vv   NPFF MUTATED NPFF WILD-TYPE
  M0            3            112
  M1            0             13
  MX            0              4
D7V8, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NPFF MUTATED      3    0
  NPFF WILD-TYPE  122    7
     clus
vv    NPFF MUTATED NPFF WILD-TYPE
  NO             0              7
  YES            3            122

Clustering(8) Variable = OR6C70 MUTATION ANALYSIS
D8V1, survival
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE"   "OR6C70 MUTATED" "OR6C70 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"OR6C70 WILD-TYPE"   "OR6C70 MUTATED" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE"   "OR6C70 MUTATED" 
      TCGA-F1-6874 
"OR6C70 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE"   "OR6C70 MUTATED" "OR6C70 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"OR6C70 WILD-TYPE"   "OR6C70 MUTATED" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE"   "OR6C70 MUTATED" 
      TCGA-F1-6874 
"OR6C70 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE"   "OR6C70 MUTATED" "OR6C70 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"OR6C70 WILD-TYPE"   "OR6C70 MUTATED" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE" "OR6C70 WILD-TYPE"   "OR6C70 MUTATED" 
      TCGA-F1-6874 
"OR6C70 WILD-TYPE" 
[1] "hr=" "1.9"
D8V2, continuous
D8V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR6C70 MUTATED      1    3
  OR6C70 WILD-TYPE   52   76
        clus
vv       OR6C70 MUTATED OR6C70 WILD-TYPE
  FEMALE              1               52
  MALE                3               76
D8V4, multiclass
D8V5, multiclass
    clus
vv   OR6C70 MUTATED OR6C70 WILD-TYPE
  T1              1                3
  T2              1               45
  T3              1               45
  T4              0               15
D8V6, multiclass
    clus
vv   OR6C70 MUTATED OR6C70 WILD-TYPE
  N0              0               35
  N1              2               45
  N2              2               18
  N3              0               12
D8V7, multiclass
    clus
vv   OR6C70 MUTATED OR6C70 WILD-TYPE
  M0              3              112
  M1              0               13
  MX              1                3
D8V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR6C70 MUTATED      4    0
  OR6C70 WILD-TYPE  121    7
     clus
vv    OR6C70 MUTATED OR6C70 WILD-TYPE
  NO               0                7
  YES              4              121

Clustering(9) Variable = CCS MUTATION ANALYSIS
D9V1, survival
   TCGA-B7-5816    TCGA-B7-5818    TCGA-BR-6452    TCGA-BR-6455    TCGA-BR-6457 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-BR-6458    TCGA-BR-6564    TCGA-BR-6565    TCGA-BR-6566    TCGA-BR-6705 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-BR-6706    TCGA-BR-6707    TCGA-BR-6709    TCGA-BR-6710    TCGA-BR-6801 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-BR-6802    TCGA-BR-6803    TCGA-BR-6852    TCGA-CD-5798    TCGA-CD-5799 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CD-5800    TCGA-CD-5801    TCGA-CD-5802    TCGA-CD-5803    TCGA-CD-5813 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CG-4300    TCGA-CG-4301    TCGA-CG-4304    TCGA-CG-4305    TCGA-CG-4306 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CG-4436    TCGA-CG-4437    TCGA-CG-4438    TCGA-CG-4440    TCGA-CG-4441 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CG-4443    TCGA-CG-4444    TCGA-CG-4449    TCGA-CG-4455    TCGA-CG-4460 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CG-4462    TCGA-CG-4465    TCGA-CG-4466    TCGA-CG-4469    TCGA-CG-4472 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CG-4474    TCGA-CG-4477    TCGA-CG-5716    TCGA-CG-5717    TCGA-CG-5718 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CG-5719    TCGA-CG-5720    TCGA-CG-5721    TCGA-CG-5722    TCGA-CG-5723 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CG-5724    TCGA-CG-5725    TCGA-CG-5726    TCGA-CG-5727    TCGA-CG-5728 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE"   "CCS MUTATED" 
   TCGA-CG-5730    TCGA-CG-5732    TCGA-CG-5733    TCGA-CG-5734    TCGA-D7-5577 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-D7-5578    TCGA-D7-5579    TCGA-D7-6518    TCGA-D7-6519    TCGA-D7-6520 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-D7-6521    TCGA-D7-6522    TCGA-D7-6524    TCGA-D7-6525    TCGA-D7-6526 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-D7-6527    TCGA-D7-6528    TCGA-D7-6815    TCGA-D7-6817    TCGA-D7-6818 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-D7-6820    TCGA-D7-6822    TCGA-EQ-5647    TCGA-F1-6177    TCGA-F1-6874 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE"   "CCS MUTATED" 
   TCGA-B7-5816    TCGA-B7-5818    TCGA-BR-6452    TCGA-BR-6455    TCGA-BR-6457 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-BR-6458    TCGA-BR-6564    TCGA-BR-6565    TCGA-BR-6566    TCGA-BR-6705 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-BR-6706    TCGA-BR-6707    TCGA-BR-6709    TCGA-BR-6710    TCGA-BR-6801 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-BR-6802    TCGA-BR-6803    TCGA-BR-6852    TCGA-CD-5798    TCGA-CD-5799 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CD-5800    TCGA-CD-5801    TCGA-CD-5802    TCGA-CD-5803    TCGA-CD-5813 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CG-4300    TCGA-CG-4301    TCGA-CG-4304    TCGA-CG-4305    TCGA-CG-4306 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CG-4436    TCGA-CG-4437    TCGA-CG-4438    TCGA-CG-4440    TCGA-CG-4441 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CG-4443    TCGA-CG-4444    TCGA-CG-4449    TCGA-CG-4455    TCGA-CG-4460 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CG-4462    TCGA-CG-4465    TCGA-CG-4466    TCGA-CG-4469    TCGA-CG-4472 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CG-4474    TCGA-CG-4477    TCGA-CG-5716    TCGA-CG-5717    TCGA-CG-5718 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CG-5719    TCGA-CG-5720    TCGA-CG-5721    TCGA-CG-5722    TCGA-CG-5723 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CG-5724    TCGA-CG-5725    TCGA-CG-5726    TCGA-CG-5727    TCGA-CG-5728 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE"   "CCS MUTATED" 
   TCGA-CG-5730    TCGA-CG-5732    TCGA-CG-5733    TCGA-CG-5734    TCGA-D7-5577 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-D7-5578    TCGA-D7-5579    TCGA-D7-6518    TCGA-D7-6519    TCGA-D7-6520 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-D7-6521    TCGA-D7-6522    TCGA-D7-6524    TCGA-D7-6525    TCGA-D7-6526 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-D7-6527    TCGA-D7-6528    TCGA-D7-6815    TCGA-D7-6817    TCGA-D7-6818 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-D7-6820    TCGA-D7-6822    TCGA-EQ-5647    TCGA-F1-6177    TCGA-F1-6874 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE"   "CCS MUTATED" 
   TCGA-B7-5816    TCGA-B7-5818    TCGA-BR-6452    TCGA-BR-6455    TCGA-BR-6457 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-BR-6458    TCGA-BR-6564    TCGA-BR-6565    TCGA-BR-6566    TCGA-BR-6705 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-BR-6706    TCGA-BR-6707    TCGA-BR-6709    TCGA-BR-6710    TCGA-BR-6801 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-BR-6802    TCGA-BR-6803    TCGA-BR-6852    TCGA-CD-5798    TCGA-CD-5799 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CD-5800    TCGA-CD-5801    TCGA-CD-5802    TCGA-CD-5803    TCGA-CD-5813 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CG-4300    TCGA-CG-4301    TCGA-CG-4304    TCGA-CG-4305    TCGA-CG-4306 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CG-4436    TCGA-CG-4437    TCGA-CG-4438    TCGA-CG-4440    TCGA-CG-4441 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CG-4443    TCGA-CG-4444    TCGA-CG-4449    TCGA-CG-4455    TCGA-CG-4460 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CG-4462    TCGA-CG-4465    TCGA-CG-4466    TCGA-CG-4469    TCGA-CG-4472 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CG-4474    TCGA-CG-4477    TCGA-CG-5716    TCGA-CG-5717    TCGA-CG-5718 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CG-5719    TCGA-CG-5720    TCGA-CG-5721    TCGA-CG-5722    TCGA-CG-5723 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CG-5724    TCGA-CG-5725    TCGA-CG-5726    TCGA-CG-5727    TCGA-CG-5728 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE"   "CCS MUTATED" 
   TCGA-CG-5730    TCGA-CG-5732    TCGA-CG-5733    TCGA-CG-5734    TCGA-D7-5577 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-D7-5578    TCGA-D7-5579    TCGA-D7-6518    TCGA-D7-6519    TCGA-D7-6520 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-D7-6521    TCGA-D7-6522    TCGA-D7-6524    TCGA-D7-6525    TCGA-D7-6526 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-D7-6527    TCGA-D7-6528    TCGA-D7-6815    TCGA-D7-6817    TCGA-D7-6818 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-D7-6820    TCGA-D7-6822    TCGA-EQ-5647    TCGA-F1-6177    TCGA-F1-6874 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE"   "CCS MUTATED" 
[1] "Remove cluster labels:" "CCS MUTATED"           
clus
  CCS MUTATED CCS WILD-TYPE 
            2            83 
   TCGA-B7-5816    TCGA-B7-5818    TCGA-BR-6452    TCGA-BR-6455    TCGA-BR-6457 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-BR-6458    TCGA-BR-6564    TCGA-BR-6565    TCGA-BR-6566    TCGA-BR-6705 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-BR-6706    TCGA-BR-6707    TCGA-BR-6709    TCGA-BR-6710    TCGA-BR-6801 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-BR-6802    TCGA-BR-6803    TCGA-BR-6852    TCGA-CD-5798    TCGA-CD-5799 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CD-5800    TCGA-CD-5801    TCGA-CD-5802    TCGA-CD-5803    TCGA-CD-5813 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CG-4300    TCGA-CG-4301    TCGA-CG-4304    TCGA-CG-4305    TCGA-CG-4306 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CG-4436    TCGA-CG-4437    TCGA-CG-4438    TCGA-CG-4440    TCGA-CG-4441 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CG-4443    TCGA-CG-4444    TCGA-CG-4449    TCGA-CG-4455    TCGA-CG-4460 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CG-4462    TCGA-CG-4465    TCGA-CG-4466    TCGA-CG-4469    TCGA-CG-4472 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CG-4474    TCGA-CG-4477    TCGA-CG-5716    TCGA-CG-5717    TCGA-CG-5718 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CG-5719    TCGA-CG-5720    TCGA-CG-5721    TCGA-CG-5722    TCGA-CG-5723 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CG-5724    TCGA-CG-5725    TCGA-CG-5726    TCGA-CG-5727    TCGA-CG-5730 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CG-5732    TCGA-CG-5733    TCGA-CG-5734    TCGA-D7-5577    TCGA-D7-5578 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-D7-5579    TCGA-D7-6518    TCGA-D7-6519    TCGA-D7-6520    TCGA-D7-6521 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-D7-6522    TCGA-D7-6524    TCGA-D7-6525    TCGA-D7-6526    TCGA-D7-6527 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-D7-6528    TCGA-D7-6815    TCGA-D7-6817    TCGA-D7-6818    TCGA-D7-6820 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-D7-6822    TCGA-EQ-5647    TCGA-F1-6177 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
D9V2, continuous
D9V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  CCS MUTATED      1    2
  CCS WILD-TYPE   52   77
        clus
vv       CCS MUTATED CCS WILD-TYPE
  FEMALE           1            52
  MALE             2            77
D9V4, multiclass
D9V5, multiclass
[1] "Remove cluster labels:" "CCS MUTATED"           
clus
  CCS MUTATED CCS WILD-TYPE 
            2           109 
   TCGA-B7-5816    TCGA-B7-5818    TCGA-BR-4183    TCGA-BR-4184    TCGA-BR-4190 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-BR-4201    TCGA-BR-4253    TCGA-BR-4255    TCGA-BR-4267    TCGA-BR-4277 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-BR-4278    TCGA-BR-4279    TCGA-BR-4280    TCGA-BR-4292    TCGA-BR-4294 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-BR-4298    TCGA-BR-4357    TCGA-BR-4361    TCGA-BR-4363    TCGA-BR-4368 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-BR-4371    TCGA-BR-4376    TCGA-BR-6452    TCGA-BR-6453    TCGA-BR-6454 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-BR-6455    TCGA-BR-6456    TCGA-BR-6457    TCGA-BR-6458    TCGA-BR-6564 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-BR-6565    TCGA-BR-6566    TCGA-BR-6705    TCGA-BR-6706    TCGA-BR-6707 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-BR-6709    TCGA-BR-6710    TCGA-BR-6801    TCGA-BR-6802    TCGA-BR-6803 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-BR-6852    TCGA-CD-5798    TCGA-CD-5799    TCGA-CD-5800    TCGA-CD-5801 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CD-5802    TCGA-CD-5803    TCGA-CD-5813    TCGA-CG-4300    TCGA-CG-4301 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CG-4304    TCGA-CG-4305    TCGA-CG-4306    TCGA-CG-4436    TCGA-CG-4437 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CG-4438    TCGA-CG-4440    TCGA-CG-4441    TCGA-CG-4442    TCGA-CG-4443 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CG-4444    TCGA-CG-4449    TCGA-CG-4455    TCGA-CG-4460    TCGA-CG-4462 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CG-4465    TCGA-CG-4466    TCGA-CG-4469    TCGA-CG-4472    TCGA-CG-4474 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CG-4475    TCGA-CG-4476    TCGA-CG-4477    TCGA-CG-5716    TCGA-CG-5717 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CG-5718    TCGA-CG-5719    TCGA-CG-5720    TCGA-CG-5721    TCGA-CG-5722 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CG-5723    TCGA-CG-5724    TCGA-CG-5725    TCGA-CG-5726    TCGA-CG-5727 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-CG-5730    TCGA-CG-5732    TCGA-CG-5733    TCGA-CG-5734    TCGA-D7-5577 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-D7-5578    TCGA-D7-5579    TCGA-D7-6518    TCGA-D7-6519    TCGA-D7-6520 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-D7-6521    TCGA-D7-6522    TCGA-D7-6524    TCGA-D7-6525    TCGA-D7-6526 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-D7-6527    TCGA-D7-6528    TCGA-D7-6815    TCGA-D7-6817    TCGA-D7-6818 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
   TCGA-D7-6820    TCGA-D7-6822    TCGA-EQ-5647    TCGA-F1-6177 
"CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" "CCS WILD-TYPE" 
D9V6, multiclass
    clus
vv   CCS MUTATED CCS WILD-TYPE
  N0           2            33
  N1           1            46
  N2           0            20
  N3           0            12
D9V7, multiclass
    clus
vv   CCS MUTATED CCS WILD-TYPE
  M0           3           112
  M1           0            13
  MX           0             4
D9V8, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  CCS MUTATED      3    0
  CCS WILD-TYPE  122    7
     clus
vv    CCS MUTATED CCS WILD-TYPE
  NO            0             7
  YES           3           122

Clustering(10) Variable = TNNI2 MUTATION ANALYSIS
D10V1, survival
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"TNNI2 WILD-TYPE"   "TNNI2 MUTATED" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE"   "TNNI2 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-F1-6874 
"TNNI2 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"TNNI2 WILD-TYPE"   "TNNI2 MUTATED" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE"   "TNNI2 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-F1-6874 
"TNNI2 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"TNNI2 WILD-TYPE"   "TNNI2 MUTATED" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE"   "TNNI2 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-F1-6874 
"TNNI2 WILD-TYPE" 
[1] "Remove cluster labels:" "TNNI2 MUTATED"         
clus
  TNNI2 MUTATED TNNI2 WILD-TYPE 
              2              83 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443      TCGA-CG-4444 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460      TCGA-CG-4462 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4472      TCGA-CG-4474 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CG-4477      TCGA-CG-5716      TCGA-CG-5717      TCGA-CG-5718 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5725      TCGA-CG-5726 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-F1-6177      TCGA-F1-6874 
"TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" "TNNI2 WILD-TYPE" 
D10V2, continuous
D10V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TNNI2 MUTATED      1    4
  TNNI2 WILD-TYPE   52   75
        clus
vv       TNNI2 MUTATED TNNI2 WILD-TYPE
  FEMALE             1              52
  MALE               4              75
D10V4, multiclass
D10V5, multiclass
    clus
vv   TNNI2 MUTATED TNNI2 WILD-TYPE
  T1             0               4
  T2             0              46
  T3             3              43
  T4             1              14
D10V6, multiclass
    clus
vv   TNNI2 MUTATED TNNI2 WILD-TYPE
  N0             1              34
  N1             1              46
  N2             1              19
  N3             1              11
D10V7, multiclass
    clus
vv   TNNI2 MUTATED TNNI2 WILD-TYPE
  M0             4             111
  M1             1              12
  MX             0               4
D10V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TNNI2 MUTATED      5    0
  TNNI2 WILD-TYPE  120    7
     clus
vv    TNNI2 MUTATED TNNI2 WILD-TYPE
  NO              0               7
  YES             5             120

Clustering(11) Variable = PRKRA MUTATION ANALYSIS
D11V1, survival
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-F1-6874 
"PRKRA WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-F1-6874 
"PRKRA WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-F1-6874 
"PRKRA WILD-TYPE" 
D11V2, continuous
D11V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRKRA MUTATED      1    2
  PRKRA WILD-TYPE   52   77
        clus
vv       PRKRA MUTATED PRKRA WILD-TYPE
  FEMALE             1              52
  MALE               2              77
D11V4, multiclass
D11V5, multiclass
[1] "Remove cluster labels:" "PRKRA MUTATED"         
clus
  PRKRA MUTATED PRKRA WILD-TYPE 
              2             109 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4190 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-BR-4201      TCGA-BR-4255      TCGA-BR-4267      TCGA-BR-4277 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-BR-4278      TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4292 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-BR-4294      TCGA-BR-4298      TCGA-BR-4357      TCGA-BR-4361 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-BR-4363      TCGA-BR-4368      TCGA-BR-4371      TCGA-BR-4376 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-BR-6452      TCGA-BR-6453      TCGA-BR-6454      TCGA-BR-6455 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-BR-6456      TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-BR-6565      TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-BR-6707      TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CD-5803      TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-4442      TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-4455      TCGA-CG-4460      TCGA-CG-4462      TCGA-CG-4465 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-4466      TCGA-CG-4469      TCGA-CG-4472      TCGA-CG-4474 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-4475      TCGA-CG-4476      TCGA-CG-4477      TCGA-CG-5716 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-F1-6874 
"PRKRA WILD-TYPE" 
D11V6, multiclass
[1] "Remove cluster labels:" "PRKRA MUTATED"         
clus
  PRKRA MUTATED PRKRA WILD-TYPE 
              2             112 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4188 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-BR-4190      TCGA-BR-4191      TCGA-BR-4195      TCGA-BR-4199 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-BR-4200      TCGA-BR-4255      TCGA-BR-4256      TCGA-BR-4261 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-BR-4267      TCGA-BR-4278      TCGA-BR-4279      TCGA-BR-4280 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-BR-4281      TCGA-BR-4298      TCGA-BR-4361      TCGA-BR-4362 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-BR-4367      TCGA-BR-4368      TCGA-BR-4376      TCGA-BR-6452 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-BR-6453      TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4442 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-4460      TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-4469      TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4475 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-4476      TCGA-CG-4477      TCGA-CG-5716      TCGA-CG-5717 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5725 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
     TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177      TCGA-F1-6874 
"PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" "PRKRA WILD-TYPE" 
D11V7, multiclass
    clus
vv   PRKRA MUTATED PRKRA WILD-TYPE
  M0             2             113
  M1             0              13
  MX             1               3
D11V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRKRA MUTATED      3    0
  PRKRA WILD-TYPE  122    7
     clus
vv    PRKRA MUTATED PRKRA WILD-TYPE
  NO              0               7
  YES             3             122

Clustering(12) Variable = MS4A6A MUTATION ANALYSIS
D12V1, survival
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE"   "MS4A6A MUTATED" "MS4A6A WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-F1-6874 
"MS4A6A WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE"   "MS4A6A MUTATED" "MS4A6A WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-F1-6874 
"MS4A6A WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE"   "MS4A6A MUTATED" "MS4A6A WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-F1-6874 
"MS4A6A WILD-TYPE" 
[1] "Remove cluster labels:" "MS4A6A MUTATED"        
clus
  MS4A6A MUTATED MS4A6A WILD-TYPE 
               1               84 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6707       TCGA-BR-6709 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5813 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304       TCGA-CG-4305 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437       TCGA-CG-4438 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443       TCGA-CG-4444 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460       TCGA-CG-4462 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469       TCGA-CG-4472 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716       TCGA-CG-5717 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5721 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724       TCGA-CG-5725 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728       TCGA-CG-5730 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734       TCGA-D7-5577 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518       TCGA-D7-6519 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527       TCGA-D7-6528 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
      TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177       TCGA-F1-6874 
"MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" "MS4A6A WILD-TYPE" 
D12V2, continuous
D12V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MS4A6A MUTATED      2    1
  MS4A6A WILD-TYPE   51   78
        clus
vv       MS4A6A MUTATED MS4A6A WILD-TYPE
  FEMALE              2               51
  MALE                1               78
D12V4, multiclass
D12V5, multiclass
    clus
vv   MS4A6A MUTATED MS4A6A WILD-TYPE
  T1              0                4
  T2              0               46
  T3              2               44
  T4              1               14
D12V6, multiclass
    clus
vv   MS4A6A MUTATED MS4A6A WILD-TYPE
  N0              1               34
  N1              1               46
  N2              1               19
  N3              0               12
D12V7, multiclass
    clus
vv   MS4A6A MUTATED MS4A6A WILD-TYPE
  M0              3              112
  M1              0               13
  MX              0                4
D12V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MS4A6A MUTATED      3    0
  MS4A6A WILD-TYPE  122    7
     clus
vv    MS4A6A MUTATED MS4A6A WILD-TYPE
  NO               0                7
  YES              3              122

Clustering(13) Variable = CCDC97 MUTATION ANALYSIS
D13V1, survival
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE"   "CCDC97 MUTATED" "CCDC97 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE"   "CCDC97 MUTATED" "CCDC97 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-F1-6874 
"CCDC97 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE"   "CCDC97 MUTATED" "CCDC97 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE"   "CCDC97 MUTATED" "CCDC97 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-F1-6874 
"CCDC97 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE"   "CCDC97 MUTATED" "CCDC97 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE"   "CCDC97 MUTATED" "CCDC97 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-F1-6874 
"CCDC97 WILD-TYPE" 
[1] "Remove cluster labels:" "CCDC97 MUTATED"        
clus
  CCDC97 MUTATED CCDC97 WILD-TYPE 
               2               83 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6455       TCGA-BR-6457 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6709 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5813 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304       TCGA-CG-4305 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437       TCGA-CG-4438 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443       TCGA-CG-4444 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460       TCGA-CG-4462 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469       TCGA-CG-4472 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716       TCGA-CG-5717 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5721 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724       TCGA-CG-5725 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728       TCGA-CG-5730 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-5732       TCGA-CG-5734       TCGA-D7-5577       TCGA-D7-5578 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-D7-5579       TCGA-D7-6518       TCGA-D7-6519       TCGA-D7-6520 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524       TCGA-D7-6525 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-D7-6526       TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-EQ-5647       TCGA-F1-6177       TCGA-F1-6874 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
D13V2, continuous
D13V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CCDC97 MUTATED      3    0
  CCDC97 WILD-TYPE   50   79
        clus
vv       CCDC97 MUTATED CCDC97 WILD-TYPE
  FEMALE              3               50
  MALE                0               79
D13V4, multiclass
D13V5, multiclass
    clus
vv   CCDC97 MUTATED CCDC97 WILD-TYPE
  T1              1                3
  T2              1               45
  T3              1               45
  T4              0               15
D13V6, multiclass
[1] "Remove cluster labels:" "CCDC97 MUTATED"        
clus
  CCDC97 MUTATED CCDC97 WILD-TYPE 
               2              112 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-4183       TCGA-BR-4184 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-BR-4188       TCGA-BR-4190       TCGA-BR-4191       TCGA-BR-4195 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-BR-4199       TCGA-BR-4200       TCGA-BR-4253       TCGA-BR-4255 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-BR-4256       TCGA-BR-4261       TCGA-BR-4267       TCGA-BR-4278 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-BR-4279       TCGA-BR-4280       TCGA-BR-4281       TCGA-BR-4298 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-BR-4361       TCGA-BR-4362       TCGA-BR-4367       TCGA-BR-4368 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-BR-4376       TCGA-BR-6453       TCGA-BR-6454       TCGA-BR-6455 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-BR-6456       TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-BR-6565       TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-BR-6707       TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-BR-6802       TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CD-5799       TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CD-5803       TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-4304       TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-4437       TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-4442       TCGA-CG-4443       TCGA-CG-4444       TCGA-CG-4449 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-4455       TCGA-CG-4460       TCGA-CG-4462       TCGA-CG-4465 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-4466       TCGA-CG-4469       TCGA-CG-4472       TCGA-CG-4474 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-4475       TCGA-CG-4476       TCGA-CG-4477       TCGA-CG-5716 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5734       TCGA-D7-5577 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518       TCGA-D7-6519 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527       TCGA-D7-6528 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
      TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177       TCGA-F1-6874 
"CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" "CCDC97 WILD-TYPE" 
D13V7, multiclass
    clus
vv   CCDC97 MUTATED CCDC97 WILD-TYPE
  M0              3              112
  M1              0               13
  MX              0                4
D13V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CCDC97 MUTATED      3    0
  CCDC97 WILD-TYPE  122    7
     clus
vv    CCDC97 MUTATED CCDC97 WILD-TYPE
  NO               0                7
  YES              3              122

Clustering(14) Variable = ZNF223 MUTATION ANALYSIS
D14V1, survival
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE"   "ZNF223 MUTATED" "ZNF223 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"ZNF223 WILD-TYPE"   "ZNF223 MUTATED" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE"   "ZNF223 MUTATED" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-F1-6874 
"ZNF223 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE"   "ZNF223 MUTATED" "ZNF223 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"ZNF223 WILD-TYPE"   "ZNF223 MUTATED" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE"   "ZNF223 MUTATED" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-F1-6874 
"ZNF223 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE"   "ZNF223 MUTATED" "ZNF223 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"ZNF223 WILD-TYPE"   "ZNF223 MUTATED" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE"   "ZNF223 MUTATED" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" "ZNF223 WILD-TYPE" 
      TCGA-F1-6874 
"ZNF223 WILD-TYPE" 
[1] "hr=" "1.9"
D14V2, continuous
D14V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF223 MUTATED      3    1
  ZNF223 WILD-TYPE   50   78
        clus
vv       ZNF223 MUTATED ZNF223 WILD-TYPE
  FEMALE              3               50
  MALE                1               78
D14V4, multiclass
D14V5, multiclass
    clus
vv   ZNF223 MUTATED ZNF223 WILD-TYPE
  T1              0                4
  T2              0               46
  T3              2               44
  T4              1               14
D14V6, multiclass
    clus
vv   ZNF223 MUTATED ZNF223 WILD-TYPE
  N0              1               34
  N1              3               44
  N2              0               20
  N3              0               12
D14V7, multiclass
    clus
vv   ZNF223 MUTATED ZNF223 WILD-TYPE
  M0              3              112
  M1              1               12
  MX              0                4
D14V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF223 MUTATED      4    0
  ZNF223 WILD-TYPE  121    7
     clus
vv    ZNF223 MUTATED ZNF223 WILD-TYPE
  NO               0                7
  YES              4              121

Clustering(15) Variable = ZNF284 MUTATION ANALYSIS
D15V1, survival
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"ZNF284 WILD-TYPE"   "ZNF284 MUTATED" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
  "ZNF284 MUTATED" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-F1-6874 
"ZNF284 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"ZNF284 WILD-TYPE"   "ZNF284 MUTATED" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
  "ZNF284 MUTATED" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-F1-6874 
"ZNF284 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"ZNF284 WILD-TYPE"   "ZNF284 MUTATED" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
  "ZNF284 MUTATED" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-F1-6874 
"ZNF284 WILD-TYPE" 
[1] "Remove cluster labels:" "ZNF284 MUTATED"        
clus
  ZNF284 MUTATED ZNF284 WILD-TYPE 
               2               83 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5813 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304       TCGA-CG-4305 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437       TCGA-CG-4438 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443       TCGA-CG-4444 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460       TCGA-CG-4462 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469       TCGA-CG-4472 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716       TCGA-CG-5718 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5722 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-5723       TCGA-CG-5724       TCGA-CG-5725       TCGA-CG-5726 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-5727       TCGA-CG-5728       TCGA-CG-5730       TCGA-CG-5732 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-5733       TCGA-CG-5734       TCGA-D7-5577       TCGA-D7-5578 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-D7-5579       TCGA-D7-6518       TCGA-D7-6519       TCGA-D7-6520 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524       TCGA-D7-6525 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-D7-6526       TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-EQ-5647       TCGA-F1-6177       TCGA-F1-6874 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
D15V2, continuous
D15V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF284 MUTATED      0    3
  ZNF284 WILD-TYPE   53   76
        clus
vv       ZNF284 MUTATED ZNF284 WILD-TYPE
  FEMALE              0               53
  MALE                3               76
D15V4, multiclass
D15V5, multiclass
    clus
vv   ZNF284 MUTATED ZNF284 WILD-TYPE
  T1              0                4
  T2              2               44
  T3              1               45
  T4              0               15
D15V6, multiclass
[1] "Remove cluster labels:" "ZNF284 MUTATED"        
clus
  ZNF284 MUTATED ZNF284 WILD-TYPE 
               2              112 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-4183       TCGA-BR-4184 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-BR-4188       TCGA-BR-4190       TCGA-BR-4191       TCGA-BR-4195 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-BR-4199       TCGA-BR-4200       TCGA-BR-4253       TCGA-BR-4255 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-BR-4256       TCGA-BR-4261       TCGA-BR-4267       TCGA-BR-4278 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-BR-4279       TCGA-BR-4280       TCGA-BR-4281       TCGA-BR-4298 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-BR-4361       TCGA-BR-4362       TCGA-BR-4367       TCGA-BR-4368 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-BR-4376       TCGA-BR-6452       TCGA-BR-6453       TCGA-BR-6454 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457       TCGA-BR-6458 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566       TCGA-BR-6705 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6709       TCGA-BR-6801 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-BR-6802       TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CD-5799       TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CD-5803       TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-4304       TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-4437       TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-4442       TCGA-CG-4443       TCGA-CG-4444       TCGA-CG-4449 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-4455       TCGA-CG-4460       TCGA-CG-4462       TCGA-CG-4465 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-4466       TCGA-CG-4469       TCGA-CG-4472       TCGA-CG-4474 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-4475       TCGA-CG-4476       TCGA-CG-4477       TCGA-CG-5716 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5721 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724       TCGA-CG-5725 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728       TCGA-CG-5730 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734       TCGA-D7-5577 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518       TCGA-D7-6519 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527       TCGA-D7-6528 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
      TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177       TCGA-F1-6874 
"ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" "ZNF284 WILD-TYPE" 
D15V7, multiclass
    clus
vv   ZNF284 MUTATED ZNF284 WILD-TYPE
  M0              2              113
  M1              0               13
  MX              1                3
D15V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF284 MUTATED      3    0
  ZNF284 WILD-TYPE  122    7
     clus
vv    ZNF284 MUTATED ZNF284 WILD-TYPE
  NO               0                7
  YES              3              122

Clustering(16) Variable = PCDHA6 MUTATION ANALYSIS
D16V1, survival
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE"   "PCDHA6 MUTATED" "PCDHA6 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"PCDHA6 WILD-TYPE"   "PCDHA6 MUTATED" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"PCDHA6 WILD-TYPE"   "PCDHA6 MUTATED" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
  "PCDHA6 MUTATED" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE"   "PCDHA6 MUTATED" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"PCDHA6 WILD-TYPE"   "PCDHA6 MUTATED"   "PCDHA6 MUTATED" "PCDHA6 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE"   "PCDHA6 MUTATED" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE"   "PCDHA6 MUTATED" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-F1-6874 
"PCDHA6 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE"   "PCDHA6 MUTATED" "PCDHA6 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"PCDHA6 WILD-TYPE"   "PCDHA6 MUTATED" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"PCDHA6 WILD-TYPE"   "PCDHA6 MUTATED" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
  "PCDHA6 MUTATED" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE"   "PCDHA6 MUTATED" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"PCDHA6 WILD-TYPE"   "PCDHA6 MUTATED"   "PCDHA6 MUTATED" "PCDHA6 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE"   "PCDHA6 MUTATED" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE"   "PCDHA6 MUTATED" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-F1-6874 
"PCDHA6 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE"   "PCDHA6 MUTATED" "PCDHA6 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"PCDHA6 WILD-TYPE"   "PCDHA6 MUTATED" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"PCDHA6 WILD-TYPE"   "PCDHA6 MUTATED" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
  "PCDHA6 MUTATED" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE"   "PCDHA6 MUTATED" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"PCDHA6 WILD-TYPE"   "PCDHA6 MUTATED"   "PCDHA6 MUTATED" "PCDHA6 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE"   "PCDHA6 MUTATED" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE"   "PCDHA6 MUTATED" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" "PCDHA6 WILD-TYPE" 
      TCGA-F1-6874 
"PCDHA6 WILD-TYPE" 
[1] "hr=" "3.1"
D16V2, continuous
D16V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDHA6 MUTATED     10    4
  PCDHA6 WILD-TYPE   43   75
        clus
vv       PCDHA6 MUTATED PCDHA6 WILD-TYPE
  FEMALE             10               43
  MALE                4               75
D16V4, multiclass
D16V5, multiclass
    clus
vv   PCDHA6 MUTATED PCDHA6 WILD-TYPE
  T1              1                3
  T2              5               41
  T3              5               41
  T4              1               14
D16V6, multiclass
    clus
vv   PCDHA6 MUTATED PCDHA6 WILD-TYPE
  N0              3               32
  N1              5               42
  N2              2               18
  N3              1               11
D16V7, multiclass
    clus
vv   PCDHA6 MUTATED PCDHA6 WILD-TYPE
  M0             12              103
  M1              2               11
  MX              0                4
D16V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDHA6 MUTATED     13    1
  PCDHA6 WILD-TYPE  112    6
     clus
vv    PCDHA6 MUTATED PCDHA6 WILD-TYPE
  NO               1                6
  YES             13              112

Clustering(17) Variable = ZDHHC23 MUTATION ANALYSIS
D17V1, survival
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"ZDHHC23 WILD-TYPE"   "ZDHHC23 MUTATED" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-F1-6874 
"ZDHHC23 WILD-TYPE" 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"ZDHHC23 WILD-TYPE"   "ZDHHC23 MUTATED" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-F1-6874 
"ZDHHC23 WILD-TYPE" 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"ZDHHC23 WILD-TYPE"   "ZDHHC23 MUTATED" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-F1-6874 
"ZDHHC23 WILD-TYPE" 
[1] "Remove cluster labels:" "ZDHHC23 MUTATED"       
clus
  ZDHHC23 MUTATED ZDHHC23 WILD-TYPE 
                1                84 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5802        TCGA-CD-5803        TCGA-CD-5813 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304        TCGA-CG-4305 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437        TCGA-CG-4438 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443        TCGA-CG-4444 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460        TCGA-CG-4462 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469        TCGA-CG-4472 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716        TCGA-CG-5717 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720        TCGA-CG-5721 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724        TCGA-CG-5725 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728        TCGA-CG-5730 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734        TCGA-D7-5577 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518        TCGA-D7-6519 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522        TCGA-D7-6524 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527        TCGA-D7-6528 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818        TCGA-D7-6820 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177        TCGA-F1-6874 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
D17V2, continuous
[1] "Remove cluster labels:" "ZDHHC23 MUTATED"       
clus
  ZDHHC23 MUTATED ZDHHC23 WILD-TYPE 
                2               128 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-4183        TCGA-BR-4187 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-BR-4188        TCGA-BR-4190        TCGA-BR-4191        TCGA-BR-4194 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-BR-4195        TCGA-BR-4199        TCGA-BR-4200        TCGA-BR-4201 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-BR-4253        TCGA-BR-4255        TCGA-BR-4256        TCGA-BR-4257 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-BR-4259        TCGA-BR-4261        TCGA-BR-4265        TCGA-BR-4267 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-BR-4277        TCGA-BR-4278        TCGA-BR-4279        TCGA-BR-4280 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-BR-4281        TCGA-BR-4284        TCGA-BR-4291        TCGA-BR-4292 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-BR-4294        TCGA-BR-4357        TCGA-BR-4361        TCGA-BR-4362 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-BR-4363        TCGA-BR-4366        TCGA-BR-4367        TCGA-BR-4368 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-BR-4369        TCGA-BR-4370        TCGA-BR-4371        TCGA-BR-4375 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-BR-4376        TCGA-BR-6452        TCGA-BR-6453        TCGA-BR-6454 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-BR-6455        TCGA-BR-6456        TCGA-BR-6457        TCGA-BR-6458 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-BR-6564        TCGA-BR-6565        TCGA-BR-6566        TCGA-BR-6705 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-BR-6706        TCGA-BR-6707        TCGA-BR-6709        TCGA-BR-6710 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-BR-6801        TCGA-BR-6802        TCGA-BR-6803        TCGA-BR-6852 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CD-5798        TCGA-CD-5799        TCGA-CD-5802        TCGA-CD-5803 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4442 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-4443        TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-4460        TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-4469        TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4475 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-4476        TCGA-CG-4477        TCGA-CG-5716        TCGA-CG-5717 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720        TCGA-CG-5721 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724        TCGA-CG-5725 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728        TCGA-CG-5730 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734        TCGA-D7-5577 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518        TCGA-D7-6519 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522        TCGA-D7-6524 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527        TCGA-D7-6528 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818        TCGA-D7-6820 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
       TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177        TCGA-F1-6874 
"ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" "ZDHHC23 WILD-TYPE" 
D17V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZDHHC23 MUTATED      0    3
  ZDHHC23 WILD-TYPE   53   76
        clus
vv       ZDHHC23 MUTATED ZDHHC23 WILD-TYPE
  FEMALE               0                53
  MALE                 3                76
D17V4, multiclass
D17V5, multiclass
    clus
vv   ZDHHC23 MUTATED ZDHHC23 WILD-TYPE
  T1               0                 4
  T2               0                46
  T3               3                43
  T4               0                15
D17V6, multiclass
    clus
vv   ZDHHC23 MUTATED ZDHHC23 WILD-TYPE
  N0               0                35
  N1               3                44
  N2               0                20
  N3               0                12
D17V7, multiclass
    clus
vv   ZDHHC23 MUTATED ZDHHC23 WILD-TYPE
  M0               2               113
  M1               0                13
  MX               1                 3
D17V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZDHHC23 MUTATED      3    0
  ZDHHC23 WILD-TYPE  122    7
     clus
vv    ZDHHC23 MUTATED ZDHHC23 WILD-TYPE
  NO                0                 7
  YES               3               122

Clustering(18) Variable = DSCR4 MUTATION ANALYSIS
D18V1, survival
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE"   "DSCR4 MUTATED" "DSCR4 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-F1-6874 
"DSCR4 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE"   "DSCR4 MUTATED" "DSCR4 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-F1-6874 
"DSCR4 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE"   "DSCR4 MUTATED" "DSCR4 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-F1-6874 
"DSCR4 WILD-TYPE" 
[1] "Remove cluster labels:" "DSCR4 MUTATED"         
clus
  DSCR4 MUTATED DSCR4 WILD-TYPE 
              1              84 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6455      TCGA-BR-6457 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6709 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5813 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443      TCGA-CG-4444 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460      TCGA-CG-4462 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469      TCGA-CG-4472 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716      TCGA-CG-5717 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5725 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
     TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177      TCGA-F1-6874 
"DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" "DSCR4 WILD-TYPE" 
D18V2, continuous
D18V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DSCR4 MUTATED      2    1
  DSCR4 WILD-TYPE   51   78
        clus
vv       DSCR4 MUTATED DSCR4 WILD-TYPE
  FEMALE             2              51
  MALE               1              78
D18V4, multiclass
D18V5, multiclass
    clus
vv   DSCR4 MUTATED DSCR4 WILD-TYPE
  T1             0               4
  T2             0              46
  T3             2              44
  T4             1              14
D18V6, multiclass
    clus
vv   DSCR4 MUTATED DSCR4 WILD-TYPE
  N0             2              33
  N1             1              46
  N2             0              20
  N3             0              12
D18V7, multiclass
    clus
vv   DSCR4 MUTATED DSCR4 WILD-TYPE
  M0             3             112
  M1             0              13
  MX             0               4
D18V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DSCR4 MUTATED      3    0
  DSCR4 WILD-TYPE  122    7
     clus
vv    DSCR4 MUTATED DSCR4 WILD-TYPE
  NO              0               7
  YES             3             122

Clustering(19) Variable = GLT6D1 MUTATION ANALYSIS
D19V1, survival
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
  "GLT6D1 MUTATED" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-F1-6874 
"GLT6D1 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
  "GLT6D1 MUTATED" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-F1-6874 
"GLT6D1 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
  "GLT6D1 MUTATED" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-F1-6874 
"GLT6D1 WILD-TYPE" 
[1] "Remove cluster labels:" "GLT6D1 MUTATED"        
clus
  GLT6D1 MUTATED GLT6D1 WILD-TYPE 
               1               84 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728       TCGA-CG-5730 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734       TCGA-D7-5577 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518       TCGA-D7-6519 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527       TCGA-D7-6528 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177       TCGA-F1-6874 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
D19V2, continuous
D19V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GLT6D1 MUTATED      2    1
  GLT6D1 WILD-TYPE   51   78
        clus
vv       GLT6D1 MUTATED GLT6D1 WILD-TYPE
  FEMALE              2               51
  MALE                1               78
D19V4, multiclass
D19V5, multiclass
[1] "Remove cluster labels:" "GLT6D1 MUTATED"        
clus
  GLT6D1 MUTATED GLT6D1 WILD-TYPE 
               2              109 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-4183       TCGA-BR-4184 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-BR-4190       TCGA-BR-4201       TCGA-BR-4253       TCGA-BR-4255 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-BR-4267       TCGA-BR-4277       TCGA-BR-4278       TCGA-BR-4279 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-BR-4280       TCGA-BR-4292       TCGA-BR-4294       TCGA-BR-4298 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-BR-4357       TCGA-BR-4363       TCGA-BR-4368       TCGA-BR-4371 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-BR-4376       TCGA-BR-6452       TCGA-BR-6453       TCGA-BR-6454 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457       TCGA-BR-6458 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566       TCGA-BR-6705 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6709       TCGA-BR-6710 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803       TCGA-BR-6852 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800       TCGA-CD-5801 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5813       TCGA-CG-4300 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-4301       TCGA-CG-4304       TCGA-CG-4305       TCGA-CG-4306 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-4436       TCGA-CG-4437       TCGA-CG-4438       TCGA-CG-4440 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-4441       TCGA-CG-4442       TCGA-CG-4443       TCGA-CG-4444 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460       TCGA-CG-4462 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469       TCGA-CG-4472 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-4474       TCGA-CG-4475       TCGA-CG-4476       TCGA-CG-4477 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-5716       TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-5724       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" "GLT6D1 WILD-TYPE" 
      TCGA-F1-6874 
"GLT6D1 WILD-TYPE" 
D19V6, multiclass
    clus
vv   GLT6D1 MUTATED GLT6D1 WILD-TYPE
  N0              2               33
  N1              1               46
  N2              0               20
  N3              0               12
D19V7, multiclass
    clus
vv   GLT6D1 MUTATED GLT6D1 WILD-TYPE
  M0              3              112
  M1              0               13
  MX              0                4
D19V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GLT6D1 MUTATED      3    0
  GLT6D1 WILD-TYPE  122    7
     clus
vv    GLT6D1 MUTATED GLT6D1 WILD-TYPE
  NO               0                7
  YES              3              122

Clustering(20) Variable = MAML1 MUTATION ANALYSIS
D20V1, survival
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE"   "MAML1 MUTATED" "MAML1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE"   "MAML1 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE"   "MAML1 MUTATED" "MAML1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-F1-6874 
"MAML1 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE"   "MAML1 MUTATED" "MAML1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE"   "MAML1 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE"   "MAML1 MUTATED" "MAML1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-F1-6874 
"MAML1 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE"   "MAML1 MUTATED" "MAML1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE"   "MAML1 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE"   "MAML1 MUTATED" "MAML1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" "MAML1 WILD-TYPE" 
     TCGA-F1-6874 
"MAML1 WILD-TYPE" 
[1] "hr=" "1.1"
D20V2, continuous
D20V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MAML1 MUTATED      3    1
  MAML1 WILD-TYPE   50   78
        clus
vv       MAML1 MUTATED MAML1 WILD-TYPE
  FEMALE             3              50
  MALE               1              78
D20V4, multiclass
D20V5, multiclass
    clus
vv   MAML1 MUTATED MAML1 WILD-TYPE
  T1             0               4
  T2             2              44
  T3             2              44
  T4             0              15
D20V6, multiclass
    clus
vv   MAML1 MUTATED MAML1 WILD-TYPE
  N0             2              33
  N1             0              47
  N2             1              19
  N3             0              12
D20V7, multiclass
    clus
vv   MAML1 MUTATED MAML1 WILD-TYPE
  M0             3             112
  M1             0              13
  MX             1               3
D20V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MAML1 MUTATED      4    0
  MAML1 WILD-TYPE  121    7
     clus
vv    MAML1 MUTATED MAML1 WILD-TYPE
  NO              0               7
  YES             4             121

Clustering(21) Variable = NME5 MUTATION ANALYSIS
D21V1, survival
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"NME5 WILD-TYPE" "NME5 WILD-TYPE"   "NME5 MUTATED" "NME5 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
  "NME5 MUTATED" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-F1-6874 
"NME5 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"NME5 WILD-TYPE" "NME5 WILD-TYPE"   "NME5 MUTATED" "NME5 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
  "NME5 MUTATED" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-F1-6874 
"NME5 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"NME5 WILD-TYPE" "NME5 WILD-TYPE"   "NME5 MUTATED" "NME5 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
  "NME5 MUTATED" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-F1-6874 
"NME5 WILD-TYPE" 
[1] "Remove cluster labels:" "NME5 MUTATED"          
clus
  NME5 MUTATED NME5 WILD-TYPE 
             2             83 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6455     TCGA-BR-6457 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6709 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802     TCGA-BR-6803 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443     TCGA-CG-4444 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460     TCGA-CG-4462 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469     TCGA-CG-4472 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716     TCGA-CG-5717 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5722 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CG-5723     TCGA-CG-5724     TCGA-CG-5725     TCGA-CG-5726 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CG-5727     TCGA-CG-5728     TCGA-CG-5730     TCGA-CG-5732 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-CG-5733     TCGA-CG-5734     TCGA-D7-5577     TCGA-D7-5578 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-D7-5579     TCGA-D7-6518     TCGA-D7-6519     TCGA-D7-6520 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-D7-6521     TCGA-D7-6522     TCGA-D7-6524     TCGA-D7-6525 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-D7-6526     TCGA-D7-6527     TCGA-D7-6528     TCGA-D7-6815 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-D7-6817     TCGA-D7-6818     TCGA-D7-6820     TCGA-D7-6822 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
    TCGA-EQ-5647     TCGA-F1-6177     TCGA-F1-6874 
"NME5 WILD-TYPE" "NME5 WILD-TYPE" "NME5 WILD-TYPE" 
D21V2, continuous
D21V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NME5 MUTATED      1    2
  NME5 WILD-TYPE   52   77
        clus
vv       NME5 MUTATED NME5 WILD-TYPE
  FEMALE            1             52
  MALE              2             77
D21V4, multiclass
D21V5, multiclass
    clus
vv   NME5 MUTATED NME5 WILD-TYPE
  T1            0              4
  T2            0             46
  T3            2             44
  T4            1             14
D21V6, multiclass
    clus
vv   NME5 MUTATED NME5 WILD-TYPE
  N0            1             34
  N1            2             45
  N2            0             20
  N3            0             12
D21V7, multiclass
    clus
vv   NME5 MUTATED NME5 WILD-TYPE
  M0            2            113
  M1            0             13
  MX            1              3
D21V8, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NME5 MUTATED      3    0
  NME5 WILD-TYPE  122    7
     clus
vv    NME5 MUTATED NME5 WILD-TYPE
  NO             0              7
  YES            3            122

Clustering(22) Variable = RRAS MUTATION ANALYSIS
D22V1, survival
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-F1-6874 
"RRAS WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-F1-6874 
"RRAS WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-F1-6874 
"RRAS WILD-TYPE" 
D22V2, continuous
D22V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RRAS MUTATED      1    2
  RRAS WILD-TYPE   52   77
        clus
vv       RRAS MUTATED RRAS WILD-TYPE
  FEMALE            1             52
  MALE              2             77
D22V4, multiclass
D22V5, multiclass
[1] "Remove cluster labels:" "RRAS MUTATED"          
clus
  RRAS MUTATED RRAS WILD-TYPE 
             1            110 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4183     TCGA-BR-4184 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-BR-4190     TCGA-BR-4201     TCGA-BR-4253     TCGA-BR-4255 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-BR-4277     TCGA-BR-4278     TCGA-BR-4279     TCGA-BR-4280 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-BR-4292     TCGA-BR-4294     TCGA-BR-4298     TCGA-BR-4357 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-BR-4361     TCGA-BR-4363     TCGA-BR-4368     TCGA-BR-4371 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-BR-4376     TCGA-BR-6452     TCGA-BR-6453     TCGA-BR-6454 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457     TCGA-BR-6458 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566     TCGA-BR-6705 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6709     TCGA-BR-6710 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-BR-6801     TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800     TCGA-CD-5801 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813     TCGA-CG-4300 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4440 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4442     TCGA-CG-4443     TCGA-CG-4444 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460     TCGA-CG-4462 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469     TCGA-CG-4472 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CG-4474     TCGA-CG-4475     TCGA-CG-4476     TCGA-CG-4477 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CG-5716     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CG-5724     TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CG-5728     TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-CG-5734     TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-D7-6518     TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-D7-6522     TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-D7-6527     TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-D7-6818     TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" "RRAS WILD-TYPE" 
    TCGA-F1-6177     TCGA-F1-6874 
"RRAS WILD-TYPE" "RRAS WILD-TYPE" 
D22V6, multiclass
    clus
vv   RRAS MUTATED RRAS WILD-TYPE
  N0            1             34
  N1            2             45
  N2            0             20
  N3            0             12
D22V7, multiclass
    clus
vv   RRAS MUTATED RRAS WILD-TYPE
  M0            3            112
  M1            0             13
  MX            0              4
D22V8, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RRAS MUTATED      3    0
  RRAS WILD-TYPE  122    7
     clus
vv    RRAS MUTATED RRAS WILD-TYPE
  NO             0              7
  YES            3            122

Clustering(23) Variable = USP48 MUTATION ANALYSIS
D23V1, survival
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE"   "USP48 MUTATED" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
  "USP48 MUTATED" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-F1-6874 
"USP48 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE"   "USP48 MUTATED" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
  "USP48 MUTATED" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-F1-6874 
"USP48 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE"   "USP48 MUTATED" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
  "USP48 MUTATED" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-F1-6874 
"USP48 WILD-TYPE" 
[1] "Remove cluster labels:" "USP48 MUTATED"         
clus
  USP48 MUTATED USP48 WILD-TYPE 
              2              83 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5721 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5725 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5732 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-F1-6177      TCGA-F1-6874 
"USP48 WILD-TYPE" "USP48 WILD-TYPE" "USP48 WILD-TYPE" 
D23V2, continuous
D23V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  USP48 MUTATED      1    4
  USP48 WILD-TYPE   52   75
        clus
vv       USP48 MUTATED USP48 WILD-TYPE
  FEMALE             1              52
  MALE               4              75
D23V4, multiclass
D23V5, multiclass
    clus
vv   USP48 MUTATED USP48 WILD-TYPE
  T1             0               4
  T2             2              44
  T3             1              45
  T4             0              15
D23V6, multiclass
    clus
vv   USP48 MUTATED USP48 WILD-TYPE
  N0             1              34
  N1             4              43
  N2             0              20
  N3             0              12
D23V7, multiclass
    clus
vv   USP48 MUTATED USP48 WILD-TYPE
  M0             3             112
  M1             1              12
  MX             1               3
D23V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  USP48 MUTATED      5    0
  USP48 WILD-TYPE  120    7
     clus
vv    USP48 MUTATED USP48 WILD-TYPE
  NO              0               7
  YES             5             120

Clustering(24) Variable = LRRC55 MUTATION ANALYSIS
D24V1, survival
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE"   "LRRC55 MUTATED" "LRRC55 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
  "LRRC55 MUTATED" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-F1-6874 
"LRRC55 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE"   "LRRC55 MUTATED" "LRRC55 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
  "LRRC55 MUTATED" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-F1-6874 
"LRRC55 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE"   "LRRC55 MUTATED" "LRRC55 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
  "LRRC55 MUTATED" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-F1-6874 
"LRRC55 WILD-TYPE" 
[1] "Remove cluster labels:" "LRRC55 MUTATED"        
clus
  LRRC55 MUTATED LRRC55 WILD-TYPE 
               2               83 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6455       TCGA-BR-6457 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6709 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5813 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304       TCGA-CG-4305 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437       TCGA-CG-4438 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443       TCGA-CG-4444 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460       TCGA-CG-4462 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469       TCGA-CG-4474 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-4477       TCGA-CG-5716       TCGA-CG-5717       TCGA-CG-5718 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5722 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-5723       TCGA-CG-5724       TCGA-CG-5725       TCGA-CG-5726 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-5727       TCGA-CG-5728       TCGA-CG-5730       TCGA-CG-5732 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-5733       TCGA-CG-5734       TCGA-D7-5577       TCGA-D7-5578 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-D7-5579       TCGA-D7-6518       TCGA-D7-6519       TCGA-D7-6520 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524       TCGA-D7-6525 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-D7-6526       TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-EQ-5647       TCGA-F1-6177       TCGA-F1-6874 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
D24V2, continuous
D24V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRC55 MUTATED      2    1
  LRRC55 WILD-TYPE   51   78
        clus
vv       LRRC55 MUTATED LRRC55 WILD-TYPE
  FEMALE              2               51
  MALE                1               78
D24V4, multiclass
[1] "Remove cluster labels:" "LRRC55 MUTATED"        
clus
  LRRC55 MUTATED LRRC55 WILD-TYPE 
               2              125 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-4183       TCGA-BR-4184 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-BR-4187       TCGA-BR-4188       TCGA-BR-4190       TCGA-BR-4191 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-BR-4194       TCGA-BR-4195       TCGA-BR-4199       TCGA-BR-4200 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-BR-4201       TCGA-BR-4253       TCGA-BR-4255       TCGA-BR-4256 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-BR-4257       TCGA-BR-4259       TCGA-BR-4261       TCGA-BR-4265 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-BR-4267       TCGA-BR-4277       TCGA-BR-4278       TCGA-BR-4279 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-BR-4280       TCGA-BR-4281       TCGA-BR-4284       TCGA-BR-4291 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-BR-4292       TCGA-BR-4294       TCGA-BR-4298       TCGA-BR-4357 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-BR-4362       TCGA-BR-4363       TCGA-BR-4366       TCGA-BR-4367 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-BR-4368       TCGA-BR-4369       TCGA-BR-4370       TCGA-BR-4371 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-BR-4375       TCGA-BR-4376       TCGA-BR-6453       TCGA-BR-6454 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457       TCGA-BR-6458 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566       TCGA-BR-6705 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6709       TCGA-BR-6710 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803       TCGA-BR-6852 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800       TCGA-CD-5801 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5813       TCGA-CG-4300 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-4301       TCGA-CG-4304       TCGA-CG-4305       TCGA-CG-4306 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-4436       TCGA-CG-4437       TCGA-CG-4438       TCGA-CG-4440 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-4441       TCGA-CG-4442       TCGA-CG-4443       TCGA-CG-4449 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-4455       TCGA-CG-4460       TCGA-CG-4466       TCGA-CG-4469 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-4474       TCGA-CG-4476       TCGA-CG-4477       TCGA-CG-5716 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" "LRRC55 WILD-TYPE" 
      TCGA-F1-6874 
"LRRC55 WILD-TYPE" 
D24V5, multiclass
    clus
vv   LRRC55 MUTATED LRRC55 WILD-TYPE
  T1              0                4
  T2              0               46
  T3              1               45
  T4              2               13
D24V6, multiclass
    clus
vv   LRRC55 MUTATED LRRC55 WILD-TYPE
  N0              2               33
  N1              1               46
  N2              0               20
  N3              0               12
D24V7, multiclass
    clus
vv   LRRC55 MUTATED LRRC55 WILD-TYPE
  M0              3              112
  M1              0               13
  MX              0                4
D24V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRC55 MUTATED      3    0
  LRRC55 WILD-TYPE  122    7
     clus
vv    LRRC55 MUTATED LRRC55 WILD-TYPE
  NO               0                7
  YES              3              122

Clustering(25) Variable = MAPK15 MUTATION ANALYSIS
D25V1, survival
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
  "MAPK15 MUTATED"   "MAPK15 MUTATED" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-F1-6874 
"MAPK15 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
  "MAPK15 MUTATED"   "MAPK15 MUTATED" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-F1-6874 
"MAPK15 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
  "MAPK15 MUTATED"   "MAPK15 MUTATED" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-F1-6874 
"MAPK15 WILD-TYPE" 
[1] "Remove cluster labels:" "MAPK15 MUTATED"        
clus
  MAPK15 MUTATED MAPK15 WILD-TYPE 
               2               83 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CG-4436       TCGA-CG-4437       TCGA-CG-4438       TCGA-CG-4440 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CG-4441       TCGA-CG-4443       TCGA-CG-4444       TCGA-CG-4449 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CG-4455       TCGA-CG-4460       TCGA-CG-4462       TCGA-CG-4465 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CG-4466       TCGA-CG-4469       TCGA-CG-4472       TCGA-CG-4474 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CG-4477       TCGA-CG-5716       TCGA-CG-5717       TCGA-CG-5718 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5722 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CG-5723       TCGA-CG-5724       TCGA-CG-5725       TCGA-CG-5726 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CG-5727       TCGA-CG-5728       TCGA-CG-5730       TCGA-CG-5732 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-CG-5733       TCGA-CG-5734       TCGA-D7-5577       TCGA-D7-5578 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-D7-5579       TCGA-D7-6518       TCGA-D7-6519       TCGA-D7-6520 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524       TCGA-D7-6525 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-D7-6526       TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
      TCGA-EQ-5647       TCGA-F1-6177       TCGA-F1-6874 
"MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" "MAPK15 WILD-TYPE" 
D25V2, continuous
D25V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAPK15 MUTATED      2    3
  MAPK15 WILD-TYPE   51   76
        clus
vv       MAPK15 MUTATED MAPK15 WILD-TYPE
  FEMALE              2               51
  MALE                3               76
D25V4, multiclass
D25V5, multiclass
    clus
vv   MAPK15 MUTATED MAPK15 WILD-TYPE
  T1              0                4
  T2              2               44
  T3              1               45
  T4              0               15
D25V6, multiclass
    clus
vv   MAPK15 MUTATED MAPK15 WILD-TYPE
  N0              1               34
  N1              2               45
  N2              1               19
  N3              0               12
D25V7, multiclass
    clus
vv   MAPK15 MUTATED MAPK15 WILD-TYPE
  M0              4              111
  M1              1               12
  MX              0                4
D25V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAPK15 MUTATED      5    0
  MAPK15 WILD-TYPE  120    7
     clus
vv    MAPK15 MUTATED MAPK15 WILD-TYPE
  NO               0                7
  YES              5              120

Clustering(26) Variable = RNF167 MUTATION ANALYSIS
D26V1, survival
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE"   "RNF167 MUTATED" "RNF167 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE"   "RNF167 MUTATED" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-F1-6874 
"RNF167 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE"   "RNF167 MUTATED" "RNF167 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE"   "RNF167 MUTATED" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-F1-6874 
"RNF167 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE"   "RNF167 MUTATED" "RNF167 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE"   "RNF167 MUTATED" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-F1-6874 
"RNF167 WILD-TYPE" 
[1] "Remove cluster labels:" "RNF167 MUTATED"        
clus
  RNF167 MUTATED RNF167 WILD-TYPE 
               2               83 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6455       TCGA-BR-6457 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6709 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5813 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304       TCGA-CG-4305 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437       TCGA-CG-4438 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443       TCGA-CG-4444 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4462       TCGA-CG-4465 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CG-4466       TCGA-CG-4469       TCGA-CG-4472       TCGA-CG-4474 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CG-4477       TCGA-CG-5716       TCGA-CG-5717       TCGA-CG-5718 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5722 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CG-5723       TCGA-CG-5724       TCGA-CG-5725       TCGA-CG-5726 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CG-5727       TCGA-CG-5728       TCGA-CG-5730       TCGA-CG-5732 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-CG-5733       TCGA-CG-5734       TCGA-D7-5577       TCGA-D7-5578 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-D7-5579       TCGA-D7-6518       TCGA-D7-6519       TCGA-D7-6520 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524       TCGA-D7-6525 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-D7-6526       TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
      TCGA-EQ-5647       TCGA-F1-6177       TCGA-F1-6874 
"RNF167 WILD-TYPE" "RNF167 WILD-TYPE" "RNF167 WILD-TYPE" 
D26V2, continuous
D26V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  RNF167 MUTATED      3    1
  RNF167 WILD-TYPE   50   78
        clus
vv       RNF167 MUTATED RNF167 WILD-TYPE
  FEMALE              3               50
  MALE                1               78
D26V4, multiclass
D26V5, multiclass
    clus
vv   RNF167 MUTATED RNF167 WILD-TYPE
  T1              0                4
  T2              1               45
  T3              1               45
  T4              1               14
D26V6, multiclass
    clus
vv   RNF167 MUTATED RNF167 WILD-TYPE
  N0              1               34
  N1              2               45
  N2              0               20
  N3              0               12
D26V7, multiclass
    clus
vv   RNF167 MUTATED RNF167 WILD-TYPE
  M0              3              112
  M1              1               12
  MX              0                4
D26V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  RNF167 MUTATED      4    0
  RNF167 WILD-TYPE  121    7
     clus
vv    RNF167 MUTATED RNF167 WILD-TYPE
  NO               0                7
  YES              4              121

Clustering(27) Variable = MOSC1 MUTATION ANALYSIS
D27V1, survival
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE"   "MOSC1 MUTATED" "MOSC1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE"   "MOSC1 MUTATED" 
     TCGA-F1-6874 
"MOSC1 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE"   "MOSC1 MUTATED" "MOSC1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE"   "MOSC1 MUTATED" 
     TCGA-F1-6874 
"MOSC1 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE"   "MOSC1 MUTATED" "MOSC1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE"   "MOSC1 MUTATED" 
     TCGA-F1-6874 
"MOSC1 WILD-TYPE" 
[1] "Remove cluster labels:" "MOSC1 MUTATED"         
clus
  MOSC1 MUTATED MOSC1 WILD-TYPE 
              2              83 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5728      TCGA-CG-5730 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
     TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6874 
"MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" "MOSC1 WILD-TYPE" 
D27V2, continuous
D27V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MOSC1 MUTATED      0    3
  MOSC1 WILD-TYPE   53   76
        clus
vv       MOSC1 MUTATED MOSC1 WILD-TYPE
  FEMALE             0              53
  MALE               3              76
D27V4, multiclass
D27V5, multiclass
    clus
vv   MOSC1 MUTATED MOSC1 WILD-TYPE
  T1             1               3
  T2             0              46
  T3             2              44
  T4             0              15
D27V6, multiclass
    clus
vv   MOSC1 MUTATED MOSC1 WILD-TYPE
  N0             1              34
  N1             2              45
  N2             0              20
  N3             0              12
D27V7, multiclass
    clus
vv   MOSC1 MUTATED MOSC1 WILD-TYPE
  M0             1             114
  M1             0              13
  MX             2               2
D27V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MOSC1 MUTATED      3    0
  MOSC1 WILD-TYPE  122    7
     clus
vv    MOSC1 MUTATED MOSC1 WILD-TYPE
  NO              0               7
  YES             3             122

Clustering(28) Variable = HOMEZ MUTATION ANALYSIS
D28V1, survival
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE"   "HOMEZ MUTATED" "HOMEZ WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"HOMEZ WILD-TYPE"   "HOMEZ MUTATED" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-F1-6874 
"HOMEZ WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE"   "HOMEZ MUTATED" "HOMEZ WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"HOMEZ WILD-TYPE"   "HOMEZ MUTATED" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-F1-6874 
"HOMEZ WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE"   "HOMEZ MUTATED" "HOMEZ WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"HOMEZ WILD-TYPE"   "HOMEZ MUTATED" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-F1-6874 
"HOMEZ WILD-TYPE" 
[1] "Remove cluster labels:" "HOMEZ MUTATED"         
clus
  HOMEZ MUTATED HOMEZ WILD-TYPE 
              2              83 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6455      TCGA-BR-6457 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6709 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5813 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4440 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CG-4455      TCGA-CG-4460      TCGA-CG-4462      TCGA-CG-4465 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CG-4466      TCGA-CG-4469      TCGA-CG-4472      TCGA-CG-4474 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CG-4477      TCGA-CG-5716      TCGA-CG-5717      TCGA-CG-5718 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5725      TCGA-CG-5726 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
     TCGA-EQ-5647      TCGA-F1-6177      TCGA-F1-6874 
"HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" "HOMEZ WILD-TYPE" 
D28V2, continuous
D28V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HOMEZ MUTATED      3    1
  HOMEZ WILD-TYPE   50   78
        clus
vv       HOMEZ MUTATED HOMEZ WILD-TYPE
  FEMALE             3              50
  MALE               1              78
D28V4, multiclass
D28V5, multiclass
    clus
vv   HOMEZ MUTATED HOMEZ WILD-TYPE
  T1             1               3
  T2             0              46
  T3             3              43
  T4             0              15
D28V6, multiclass
    clus
vv   HOMEZ MUTATED HOMEZ WILD-TYPE
  N0             1              34
  N1             1              46
  N2             1              19
  N3             0              12
D28V7, multiclass
    clus
vv   HOMEZ MUTATED HOMEZ WILD-TYPE
  M0             3             112
  M1             1              12
  MX             0               4
D28V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HOMEZ MUTATED      4    0
  HOMEZ WILD-TYPE  121    7
     clus
vv    HOMEZ MUTATED HOMEZ WILD-TYPE
  NO              0               7
  YES             4             121

Clustering(29) Variable = MSH5 MUTATION ANALYSIS
D29V1, survival
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"MSH5 WILD-TYPE"   "MSH5 MUTATED" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-F1-6874 
"MSH5 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"MSH5 WILD-TYPE"   "MSH5 MUTATED" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-F1-6874 
"MSH5 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"MSH5 WILD-TYPE"   "MSH5 MUTATED" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-F1-6874 
"MSH5 WILD-TYPE" 
[1] "Remove cluster labels:" "MSH5 MUTATED"          
clus
  MSH5 MUTATED MSH5 WILD-TYPE 
             1             84 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-BR-6803     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443     TCGA-CG-4444 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460     TCGA-CG-4462 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469     TCGA-CG-4472 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716     TCGA-CG-5717 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724     TCGA-CG-5725 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728     TCGA-CG-5730 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734     TCGA-D7-5577 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518     TCGA-D7-6519 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522     TCGA-D7-6524 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527     TCGA-D7-6528 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818     TCGA-D7-6820 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
    TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177     TCGA-F1-6874 
"MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" "MSH5 WILD-TYPE" 
D29V2, continuous
D29V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MSH5 MUTATED      3    2
  MSH5 WILD-TYPE   50   77
        clus
vv       MSH5 MUTATED MSH5 WILD-TYPE
  FEMALE            3             50
  MALE              2             77
D29V4, multiclass
D29V5, multiclass
    clus
vv   MSH5 MUTATED MSH5 WILD-TYPE
  T1            0              4
  T2            0             46
  T3            4             42
  T4            0             15
D29V6, multiclass
    clus
vv   MSH5 MUTATED MSH5 WILD-TYPE
  N0            1             34
  N1            3             44
  N2            1             19
  N3            0             12
D29V7, multiclass
    clus
vv   MSH5 MUTATED MSH5 WILD-TYPE
  M0            4            111
  M1            0             13
  MX            1              3
D29V8, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MSH5 MUTATED      5    0
  MSH5 WILD-TYPE  120    7
     clus
vv    MSH5 MUTATED MSH5 WILD-TYPE
  NO             0              7
  YES            5            120

Clustering(30) Variable = FBXO24 MUTATION ANALYSIS
D30V1, survival
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
  "FBXO24 MUTATED" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE"   "FBXO24 MUTATED" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE"   "FBXO24 MUTATED" "FBXO24 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-F1-6874 
"FBXO24 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
  "FBXO24 MUTATED" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE"   "FBXO24 MUTATED" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE"   "FBXO24 MUTATED" "FBXO24 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-F1-6874 
"FBXO24 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
  "FBXO24 MUTATED" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE"   "FBXO24 MUTATED" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE"   "FBXO24 MUTATED" "FBXO24 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" "FBXO24 WILD-TYPE" 
      TCGA-F1-6874 
"FBXO24 WILD-TYPE" 
[1] "hr=" "1.8"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FBXO24 MUTATED      2    3
  FBXO24 WILD-TYPE   51   76
        clus
vv       FBXO24 MUTATED FBXO24 WILD-TYPE
  FEMALE              2               51
  MALE                3               76
D30V4, multiclass
D30V5, multiclass
    clus
vv   FBXO24 MUTATED FBXO24 WILD-TYPE
  T1              0                4
  T2              4               42
  T3              1               45
  T4              0               15
D30V6, multiclass
    clus
vv   FBXO24 MUTATED FBXO24 WILD-TYPE
  N0              2               33
  N1              2               45
  N2              1               19
  N3              0               12
D30V7, multiclass
    clus
vv   FBXO24 MUTATED FBXO24 WILD-TYPE
  M0              5              110
  M1              0               13
  MX              0                4
D30V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FBXO24 MUTATED      5    0
  FBXO24 WILD-TYPE  120    7
     clus
vv    FBXO24 MUTATED FBXO24 WILD-TYPE
  NO               0                7
  YES              5              120

Clustering(31) Variable = UBE2Q1 MUTATION ANALYSIS
D31V1, survival
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
  "UBE2Q1 MUTATED" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
  "UBE2Q1 MUTATED" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-F1-6874 
"UBE2Q1 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
  "UBE2Q1 MUTATED" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
  "UBE2Q1 MUTATED" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-F1-6874 
"UBE2Q1 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
  "UBE2Q1 MUTATED" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
  "UBE2Q1 MUTATED" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-F1-6874 
"UBE2Q1 WILD-TYPE" 
[1] "Remove cluster labels:" "UBE2Q1 MUTATED"        
clus
  UBE2Q1 MUTATED UBE2Q1 WILD-TYPE 
               2               83 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443       TCGA-CG-4444 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460       TCGA-CG-4462 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469       TCGA-CG-4472 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716       TCGA-CG-5717 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5722 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CG-5723       TCGA-CG-5724       TCGA-CG-5725       TCGA-CG-5726 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CG-5727       TCGA-CG-5728       TCGA-CG-5730       TCGA-CG-5732 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-CG-5733       TCGA-CG-5734       TCGA-D7-5577       TCGA-D7-5578 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-D7-5579       TCGA-D7-6518       TCGA-D7-6519       TCGA-D7-6520 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524       TCGA-D7-6525 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-D7-6526       TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
      TCGA-EQ-5647       TCGA-F1-6177       TCGA-F1-6874 
"UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" "UBE2Q1 WILD-TYPE" 
D31V2, continuous
D31V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UBE2Q1 MUTATED      0    3
  UBE2Q1 WILD-TYPE   53   76
        clus
vv       UBE2Q1 MUTATED UBE2Q1 WILD-TYPE
  FEMALE              0               53
  MALE                3               76
D31V4, multiclass
D31V5, multiclass
    clus
vv   UBE2Q1 MUTATED UBE2Q1 WILD-TYPE
  T1              0                4
  T2              0               46
  T3              1               45
  T4              2               13
D31V6, multiclass
    clus
vv   UBE2Q1 MUTATED UBE2Q1 WILD-TYPE
  N0              0               35
  N1              2               45
  N2              1               19
  N3              0               12
D31V7, multiclass
    clus
vv   UBE2Q1 MUTATED UBE2Q1 WILD-TYPE
  M0              2              113
  M1              0               13
  MX              1                3
D31V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UBE2Q1 MUTATED      3    0
  UBE2Q1 WILD-TYPE  122    7
     clus
vv    UBE2Q1 MUTATED UBE2Q1 WILD-TYPE
  NO               0                7
  YES              3              122

Clustering(32) Variable = WNT10A MUTATION ANALYSIS
D32V1, survival
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE"   "WNT10A MUTATED" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
  "WNT10A MUTATED" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-F1-6874 
"WNT10A WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE"   "WNT10A MUTATED" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
  "WNT10A MUTATED" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-F1-6874 
"WNT10A WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE"   "WNT10A MUTATED" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
  "WNT10A MUTATED" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-F1-6874 
"WNT10A WILD-TYPE" 
[1] "Remove cluster labels:" "WNT10A MUTATED"        
clus
  WNT10A MUTATED WNT10A WILD-TYPE 
               2               83 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4462 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469       TCGA-CG-4472 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716       TCGA-CG-5717 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5722 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CG-5723       TCGA-CG-5724       TCGA-CG-5725       TCGA-CG-5726 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CG-5727       TCGA-CG-5728       TCGA-CG-5730       TCGA-CG-5732 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-CG-5733       TCGA-CG-5734       TCGA-D7-5577       TCGA-D7-5578 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-D7-5579       TCGA-D7-6518       TCGA-D7-6519       TCGA-D7-6520 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524       TCGA-D7-6525 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-D7-6526       TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
      TCGA-EQ-5647       TCGA-F1-6177       TCGA-F1-6874 
"WNT10A WILD-TYPE" "WNT10A WILD-TYPE" "WNT10A WILD-TYPE" 
D32V2, continuous
D32V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  WNT10A MUTATED      2    1
  WNT10A WILD-TYPE   51   78
        clus
vv       WNT10A MUTATED WNT10A WILD-TYPE
  FEMALE              2               51
  MALE                1               78
D32V4, multiclass
D32V5, multiclass
    clus
vv   WNT10A MUTATED WNT10A WILD-TYPE
  T1              0                4
  T2              0               46
  T3              0               46
  T4              3               12
D32V6, multiclass
    clus
vv   WNT10A MUTATED WNT10A WILD-TYPE
  N0              0               35
  N1              2               45
  N2              1               19
  N3              0               12
D32V7, multiclass
    clus
vv   WNT10A MUTATED WNT10A WILD-TYPE
  M0              2              113
  M1              1               12
  MX              0                4
D32V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  WNT10A MUTATED      3    0
  WNT10A WILD-TYPE  122    7
     clus
vv    WNT10A MUTATED WNT10A WILD-TYPE
  NO               0                7
  YES              3              122

Clustering(33) Variable = PRSS1 MUTATION ANALYSIS
D33V1, survival
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"PRSS1 WILD-TYPE"   "PRSS1 MUTATED" "PRSS1 WILD-TYPE"   "PRSS1 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-F1-6874 
"PRSS1 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"PRSS1 WILD-TYPE"   "PRSS1 MUTATED" "PRSS1 WILD-TYPE"   "PRSS1 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-F1-6874 
"PRSS1 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"PRSS1 WILD-TYPE"   "PRSS1 MUTATED" "PRSS1 WILD-TYPE"   "PRSS1 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-F1-6874 
"PRSS1 WILD-TYPE" 
[1] "Remove cluster labels:" "PRSS1 MUTATED"         
clus
  PRSS1 MUTATED PRSS1 WILD-TYPE 
              2              83 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4466      TCGA-CG-4472      TCGA-CG-4474 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-4477      TCGA-CG-5716      TCGA-CG-5717      TCGA-CG-5718 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5725      TCGA-CG-5726 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-F1-6177      TCGA-F1-6874 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
D33V2, continuous
D33V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRSS1 MUTATED      2    1
  PRSS1 WILD-TYPE   51   78
        clus
vv       PRSS1 MUTATED PRSS1 WILD-TYPE
  FEMALE             2              51
  MALE               1              78
D33V4, multiclass
[1] "Remove cluster labels:" "PRSS1 MUTATED"         
clus
  PRSS1 MUTATED PRSS1 WILD-TYPE 
              2             125 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-4187      TCGA-BR-4188      TCGA-BR-4190      TCGA-BR-4191 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-4194      TCGA-BR-4195      TCGA-BR-4199      TCGA-BR-4201 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4256      TCGA-BR-4257 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-4259      TCGA-BR-4261      TCGA-BR-4265      TCGA-BR-4267 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-4277      TCGA-BR-4278      TCGA-BR-4279      TCGA-BR-4280 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-4281      TCGA-BR-4284      TCGA-BR-4291      TCGA-BR-4292 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-4294      TCGA-BR-4298      TCGA-BR-4357      TCGA-BR-4361 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-4362      TCGA-BR-4363      TCGA-BR-4366      TCGA-BR-4367 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-4368      TCGA-BR-4369      TCGA-BR-4370      TCGA-BR-4371 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-4375      TCGA-BR-4376      TCGA-BR-6452      TCGA-BR-6453 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6709 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5813 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4442      TCGA-CG-4443 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460      TCGA-CG-4466 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-4474      TCGA-CG-4476      TCGA-CG-4477      TCGA-CG-5716 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-F1-6874 
"PRSS1 WILD-TYPE" 
D33V5, multiclass
[1] "Remove cluster labels:" "PRSS1 MUTATED"         
clus
  PRSS1 MUTATED PRSS1 WILD-TYPE 
              2             109 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-4190      TCGA-BR-4201      TCGA-BR-4253      TCGA-BR-4255 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-4267      TCGA-BR-4277      TCGA-BR-4278      TCGA-BR-4279 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-4280      TCGA-BR-4292      TCGA-BR-4294      TCGA-BR-4298 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-4357      TCGA-BR-4361      TCGA-BR-4363      TCGA-BR-4368 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-4371      TCGA-BR-4376      TCGA-BR-6452      TCGA-BR-6453 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6709 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5813 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4442      TCGA-CG-4443 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4466      TCGA-CG-4472      TCGA-CG-4474 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-4475      TCGA-CG-4476      TCGA-CG-4477      TCGA-CG-5716 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" "PRSS1 WILD-TYPE" 
     TCGA-F1-6874 
"PRSS1 WILD-TYPE" 
D33V6, multiclass
    clus
vv   PRSS1 MUTATED PRSS1 WILD-TYPE
  N0             0              35
  N1             1              46
  N2             0              20
  N3             2              10
D33V7, multiclass
    clus
vv   PRSS1 MUTATED PRSS1 WILD-TYPE
  M0             2             113
  M1             1              12
  MX             0               4
D33V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRSS1 MUTATED      3    0
  PRSS1 WILD-TYPE  122    7
     clus
vv    PRSS1 MUTATED PRSS1 WILD-TYPE
  NO              0               7
  YES             3             122

Clustering(34) Variable = PCDHB9 MUTATION ANALYSIS
D34V1, survival
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE"   "PCDHB9 MUTATED" "PCDHB9 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"PCDHB9 WILD-TYPE"   "PCDHB9 MUTATED" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
  "PCDHB9 MUTATED" "PCDHB9 WILD-TYPE"   "PCDHB9 MUTATED" "PCDHB9 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE"   "PCDHB9 MUTATED" "PCDHB9 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-F1-6874 
  "PCDHB9 MUTATED" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE"   "PCDHB9 MUTATED" "PCDHB9 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"PCDHB9 WILD-TYPE"   "PCDHB9 MUTATED" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
  "PCDHB9 MUTATED" "PCDHB9 WILD-TYPE"   "PCDHB9 MUTATED" "PCDHB9 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE"   "PCDHB9 MUTATED" "PCDHB9 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-F1-6874 
  "PCDHB9 MUTATED" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE"   "PCDHB9 MUTATED" "PCDHB9 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"PCDHB9 WILD-TYPE"   "PCDHB9 MUTATED" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
  "PCDHB9 MUTATED" "PCDHB9 WILD-TYPE"   "PCDHB9 MUTATED" "PCDHB9 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE"   "PCDHB9 MUTATED" "PCDHB9 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" "PCDHB9 WILD-TYPE" 
      TCGA-F1-6874 
  "PCDHB9 MUTATED" 
[1] "hr=" "1.7"
D34V2, continuous
D34V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDHB9 MUTATED      3    7
  PCDHB9 WILD-TYPE   50   72
        clus
vv       PCDHB9 MUTATED PCDHB9 WILD-TYPE
  FEMALE              3               50
  MALE                7               72
D34V4, multiclass
D34V5, multiclass
    clus
vv   PCDHB9 MUTATED PCDHB9 WILD-TYPE
  T1              1                3
  T2              3               43
  T3              3               43
  T4              1               14
D34V6, multiclass
    clus
vv   PCDHB9 MUTATED PCDHB9 WILD-TYPE
  N0              2               33
  N1              4               43
  N2              2               18
  N3              0               12
D34V7, multiclass
    clus
vv   PCDHB9 MUTATED PCDHB9 WILD-TYPE
  M0              8              107
  M1              1               12
  MX              1                3
D34V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDHB9 MUTATED     10    0
  PCDHB9 WILD-TYPE  115    7
     clus
vv    PCDHB9 MUTATED PCDHB9 WILD-TYPE
  NO               0                7
  YES             10              115

Clustering(35) Variable = EDF1 MUTATION ANALYSIS
D35V1, survival
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE"   "EDF1 MUTATED" "EDF1 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"EDF1 WILD-TYPE"   "EDF1 MUTATED" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-F1-6874 
"EDF1 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE"   "EDF1 MUTATED" "EDF1 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"EDF1 WILD-TYPE"   "EDF1 MUTATED" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-F1-6874 
"EDF1 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE"   "EDF1 MUTATED" "EDF1 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"EDF1 WILD-TYPE"   "EDF1 MUTATED" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-F1-6874 
"EDF1 WILD-TYPE" 
[1] "Remove cluster labels:" "EDF1 MUTATED"          
clus
  EDF1 MUTATED EDF1 WILD-TYPE 
             2             83 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6455     TCGA-BR-6457 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6709 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802     TCGA-BR-6803 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4440 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-4455     TCGA-CG-4460     TCGA-CG-4462     TCGA-CG-4465 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-4466     TCGA-CG-4469     TCGA-CG-4472     TCGA-CG-4474 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-4477     TCGA-CG-5716     TCGA-CG-5717     TCGA-CG-5718 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-5723     TCGA-CG-5724     TCGA-CG-5725     TCGA-CG-5726 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-5727     TCGA-CG-5728     TCGA-CG-5730     TCGA-CG-5732 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-5733     TCGA-CG-5734     TCGA-D7-5577     TCGA-D7-5578 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-D7-5579     TCGA-D7-6518     TCGA-D7-6519     TCGA-D7-6520 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-D7-6521     TCGA-D7-6522     TCGA-D7-6524     TCGA-D7-6525 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-D7-6526     TCGA-D7-6527     TCGA-D7-6528     TCGA-D7-6815 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-D7-6817     TCGA-D7-6818     TCGA-D7-6820     TCGA-D7-6822 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-EQ-5647     TCGA-F1-6177     TCGA-F1-6874 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
D35V2, continuous
D35V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  EDF1 MUTATED      1    2
  EDF1 WILD-TYPE   52   77
        clus
vv       EDF1 MUTATED EDF1 WILD-TYPE
  FEMALE            1             52
  MALE              2             77
D35V4, multiclass
D35V5, multiclass
[1] "Remove cluster labels:" "EDF1 MUTATED"          
clus
  EDF1 MUTATED EDF1 WILD-TYPE 
             2            109 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4183     TCGA-BR-4184 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-BR-4190     TCGA-BR-4201     TCGA-BR-4253     TCGA-BR-4255 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-BR-4267     TCGA-BR-4277     TCGA-BR-4278     TCGA-BR-4279 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-BR-4280     TCGA-BR-4292     TCGA-BR-4294     TCGA-BR-4298 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-BR-4357     TCGA-BR-4361     TCGA-BR-4363     TCGA-BR-4368 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-BR-4371     TCGA-BR-4376     TCGA-BR-6453     TCGA-BR-6454 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457     TCGA-BR-6458 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566     TCGA-BR-6705 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6709     TCGA-BR-6710 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-BR-6801     TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800     TCGA-CD-5801 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5813     TCGA-CG-4300 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4436 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-4442     TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-4455     TCGA-CG-4460     TCGA-CG-4462     TCGA-CG-4465 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-4466     TCGA-CG-4469     TCGA-CG-4472     TCGA-CG-4474 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-4475     TCGA-CG-4476     TCGA-CG-4477     TCGA-CG-5716 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" "EDF1 WILD-TYPE" 
    TCGA-F1-6874 
"EDF1 WILD-TYPE" 
D35V6, multiclass
    clus
vv   EDF1 MUTATED EDF1 WILD-TYPE
  N0            1             34
  N1            1             46
  N2            1             19
  N3            0             12
D35V7, multiclass
    clus
vv   EDF1 MUTATED EDF1 WILD-TYPE
  M0            2            113
  M1            1             12
  MX            0              4
D35V8, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  EDF1 MUTATED      3    0
  EDF1 WILD-TYPE  122    7
     clus
vv    EDF1 MUTATED EDF1 WILD-TYPE
  NO             0              7
  YES            3            122

Clustering(36) Variable = CLEC4F MUTATION ANALYSIS
D36V1, survival
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE"   "CLEC4F MUTATED" "CLEC4F WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
  "CLEC4F MUTATED" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-F1-6874 
"CLEC4F WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE"   "CLEC4F MUTATED" "CLEC4F WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
  "CLEC4F MUTATED" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-F1-6874 
"CLEC4F WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE"   "CLEC4F MUTATED" "CLEC4F WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
  "CLEC4F MUTATED" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-F1-6874 
"CLEC4F WILD-TYPE" 
[1] "Remove cluster labels:" "CLEC4F MUTATED"        
clus
  CLEC4F MUTATED CLEC4F WILD-TYPE 
               2               83 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5724       TCGA-CG-5725 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728       TCGA-CG-5730 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734       TCGA-D7-5577 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518       TCGA-D7-6519 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527       TCGA-D7-6815 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
      TCGA-EQ-5647       TCGA-F1-6177       TCGA-F1-6874 
"CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" "CLEC4F WILD-TYPE" 
D36V2, continuous
D36V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CLEC4F MUTATED      2    2
  CLEC4F WILD-TYPE   51   77
        clus
vv       CLEC4F MUTATED CLEC4F WILD-TYPE
  FEMALE              2               51
  MALE                2               77
D36V4, multiclass
D36V5, multiclass
    clus
vv   CLEC4F MUTATED CLEC4F WILD-TYPE
  T1              1                3
  T2              2               44
  T3              1               45
  T4              0               15
D36V6, multiclass
    clus
vv   CLEC4F MUTATED CLEC4F WILD-TYPE
  N0              1               34
  N1              2               45
  N2              0               20
  N3              0               12
D36V7, multiclass
    clus
vv   CLEC4F MUTATED CLEC4F WILD-TYPE
  M0              3              112
  M1              0               13
  MX              1                3
D36V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CLEC4F MUTATED      4    0
  CLEC4F WILD-TYPE  121    7
     clus
vv    CLEC4F MUTATED CLEC4F WILD-TYPE
  NO               0                7
  YES              4              121

Clustering(37) Variable = GPR146 MUTATION ANALYSIS
D37V1, survival
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE"   "GPR146 MUTATED" "GPR146 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"GPR146 WILD-TYPE"   "GPR146 MUTATED" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-F1-6874 
  "GPR146 MUTATED" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE"   "GPR146 MUTATED" "GPR146 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"GPR146 WILD-TYPE"   "GPR146 MUTATED" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-F1-6874 
  "GPR146 MUTATED" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE"   "GPR146 MUTATED" "GPR146 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"GPR146 WILD-TYPE"   "GPR146 MUTATED" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" "GPR146 WILD-TYPE" 
      TCGA-F1-6874 
  "GPR146 MUTATED" 
[1] "hr="     "9400000"
D37V2, continuous
D37V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR146 MUTATED      2    2
  GPR146 WILD-TYPE   51   77
        clus
vv       GPR146 MUTATED GPR146 WILD-TYPE
  FEMALE              2               51
  MALE                2               77
D37V4, multiclass
D37V5, multiclass
    clus
vv   GPR146 MUTATED GPR146 WILD-TYPE
  T1              0                4
  T2              1               45
  T3              2               44
  T4              1               14
D37V6, multiclass
    clus
vv   GPR146 MUTATED GPR146 WILD-TYPE
  N0              2               33
  N1              0               47
  N2              2               18
  N3              0               12
D37V7, multiclass
    clus
vv   GPR146 MUTATED GPR146 WILD-TYPE
  M0              4              111
  M1              0               13
  MX              0                4
D37V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR146 MUTATED      4    0
  GPR146 WILD-TYPE  121    7
     clus
vv    GPR146 MUTATED GPR146 WILD-TYPE
  NO               0                7
  YES              4              121
                 V1.D                    V2                    V3 
      "Time to Death"                 "AGE"              "GENDER" 
                   V4                    V5                    V6 
  "HISTOLOGICAL.TYPE"         "PATHOLOGY.T"         "PATHOLOGY.N" 
                   V7                    V8 
"PATHOLOGICSPREAD(M)" "NEOADJUVANT.THERAPY" 
> q(save="no")
