Summary: Broad GDAC Ingested TCGA Data

Summary of TCGA Tumor Data
Ingested into Broad GDAC Pipeline
2012_06_23 analyses Run

Tumor	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNAseq	miR	miRseq	RPPA	MAF

BLCA	100	66	58	0	78	0	56	0	88	0	28
BRCA	889	860	833	0	858	529	777	0	809	408	507
CESC	110	28	68	0	0	0	0	0	42	0	36
COADREAD	591	591	575	76	584	224	83	0	255	399	224
DLBC	27	0	0	0	0	0	0	0	0	0	0
GBM	596	564	563	0	287	542	0	491	0	214	276
HNSC	312	293	288	0	292	0	263	0	259	0	0
KICH	65	0	0	0	0	0	0	0	0	0	0
KIRC	502	502	490	0	500	72	469	0	463	454	403
KIRP	135	95	75	0	117	16	63	0	43	0	0
LAML	202	200	0	0	192	0	179	0	187	0	199
LGG	181	144	144	0	0	27	0	0	67	0	0
LIHC	99	57	58	0	0	0	17	0	54	0	0
LNNH	2	0	0	0	0	0	0	0	0	0	0
LUAD	425	292	265	0	347	32	210	0	95	0	229
LUSC	345	279	282	0	282	154	223	0	202	0	178
OV	592	580	564	0	551	568	207	564	454	412	316
PAAD	48	0	14	0	30	0	0	0	0	0	0
PRAD	174	127	100	0	153	0	53	0	81	0	83
SARC	29	0	0	0	0	0	0	0	0	0	0
SKCM	253	129	219	0	240	0	153	0	50	0	0
STAD	162	159	132	0	133	0	57	0	127	0	133
THCA	335	162	228	0	230	0	78	0	138	0	0
UCEC	512	450	430	0	451	54	266	0	367	200	248
PANCANCER	6686	5578	5386	76	5325	2218	3154	1055	3781	2087	2860