Broad GDAC analyses__2012_07_25__brca

Tumor	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNAseq	miR	miRseq	RPPA	MAF
BRCA	899	862	833	0	858	529	777	0	809	408	507

Note that the links below require Broad internal Firehose login credentials.

	Pipeline	NotRunnable	Successful
1	Aggregate_Clusters	0	1
2	CopyNumber_GeneBySample	0	1
3	CopyNumber_Gistic2	0	1
4	Correlate_Clinical_vs_CopyNumber_Arm	0	1
5	Correlate_Clinical_vs_CopyNumber_Focal	0	1
6	Correlate_Clinical_vs_miR	1	0
7	Correlate_Clinical_vs_Molecular_Signatures	0	1
8	Correlate_Clinical_vs_mRNA	0	1
9	Correlate_Clinical_vs_Mutation	0	1
10	Correlate_CopyNumber_vs_miR	1	0
11	Correlate_CopyNumber_vs_mRNA	0	1
12	Correlate_CopyNumber_vs_mRNAseq	0	1
13	Correlate_Methylation_vs_mRNA	0	1
14	Methylation_Clustering_CNMF	0	1
15	Methylation_Preprocess	0	1
16	miRseq_Clustering_CNMF	0	1
17	miRseq_Clustering_Consensus	0	1
18	miRseq_Preprocess	0	1
19	miR_Clustering_CNMF	1	0
20	miR_Clustering_Consensus	1	0
21	miR_FindDirectTargets	1	0
22	miR_Preprocess	1	0
23	mRNAseq_Clustering_CNMF	0	1
24	mRNAseq_Clustering_Consensus	0	1
25	mRNAseq_Preprocess	0	1
26	mRNA_Clustering_CNMF	0	1
27	mRNA_Clustering_Consensus	0	1
28	mRNA_Preprocess_Median	0	1
29	Mutation_Assessor	0	1
30	Mutation_Significance	0	1
31	Pathway_FindEnrichedGenes	0	1
32	Pathway_Paradigm_Expression	0	1
33	Pathway_Paradigm_Expression_CopyNumber	0	1
34	RPPA_Clustering_CNMF	0	1
35	RPPA_Clustering_Consensus	0	1
	Total	6	29

This table generated on Fri Aug 17 15:46:21 2012