Broad GDAC Analyses Status
analyses__2012_07_25__thca_00 Run for Tumor Type: THCA
Tumor
BCR
Clinical
CN
LowP
Methylation
mRNA
mRNAseq
miR
miRseq
RPPA
MAF
THCA
353
188
228
0
230
0
158
0
138
0
0
Note that the links below require Broad internal Firehose login credentials.
Pipeline
NotRunnable
Runnable
InProcess
Successful
Unsuccessful
1
Aggregate_Clusters
0
0
0
1
0
2
CopyNumber_GeneBySample
0
0
0
1
0
3
CopyNumber_Gistic2
0
0
0
1
0
4
Correlate_Clinical_vs_CopyNumber_Arm
0
0
0
1
0
5
Correlate_Clinical_vs_CopyNumber_Focal
0
0
0
1
0
6
Correlate_Clinical_vs_miR
1
0
0
0
0
7
Correlate_Clinical_vs_Molecular_Signatures
0
0
0
1
0
8
Correlate_Clinical_vs_mRNA
1
0
0
0
0
9
Correlate_Clinical_vs_Mutation
1
0
0
0
0
10
Correlate_CopyNumber_vs_miR
1
0
0
0
0
11
Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
12
Correlate_CopyNumber_vs_mRNAseq
0
0
0
1
0
13
Correlate_Methylation_vs_mRNA
1
0
0
0
0
14
Methylation_Clustering_CNMF
0
0
0
1
0
15
Methylation_Preprocess
0
0
0
1
0
16
miRseq_Clustering_CNMF
0
0
0
1
0
17
miRseq_Clustering_Consensus
0
0
0
1
0
18
miRseq_Preprocess
0
0
0
1
0
19
miR_Clustering_CNMF
1
0
0
0
0
20
miR_Clustering_Consensus
1
0
0
0
0
21
miR_FindDirectTargets
1
0
0
0
0
22
miR_Preprocess
1
0
0
0
0
23
mRNAseq_Clustering_CNMF
0
0
0
1
0
24
mRNAseq_Clustering_Consensus
0
0
0
1
0
25
mRNAseq_Preprocess
0
0
0
1
0
26
mRNA_Clustering_CNMF
1
0
0
0
0
27
mRNA_Clustering_Consensus
1
0
0
0
0
28
mRNA_Preprocess_Median
1
0
0
0
0
29
Mutation_Assessor
1
0
0
0
0
30
Mutation_Significance
1
0
0
0
0
31
Pathway_FindEnrichedGenes
1
0
0
0
0
32
Pathway_Paradigm_Expression
1
0
0
0
0
33
Pathway_Paradigm_Expression_CopyNumber
1
0
0
0
0
34
RPPA_Clustering_CNMF
1
0
0
0
0
35
RPPA_Clustering_Consensus
1
0
0
0
0
Total
20
0
0
15
0
This table generated on Fri Aug 17 15:46:30 2012