
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.41.3771/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.41.3771/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/145913/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/BLCA/1551038/1.GDAC_clinicalDataPicker.Finished/BLCA.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=BLCA", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"      "-oT=BLCA"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=67, in cluster file=56, common to both=53
[1] 40 53
[1] "Amp Peak  1(1p34.2) mutation analysis"
[1] 3
  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                            9                            44 
  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                            9                            44 
[1] "Amp Peak  2(1q23.3) mutation analysis"
[1] 3
  AMP PEAK  2(1Q23.3) MUTATED AMP PEAK  2(1Q23.3) WILD-TYPE 
                           25                            28 
  AMP PEAK  2(1Q23.3) MUTATED AMP PEAK  2(1Q23.3) WILD-TYPE 
                           25                            28 
[1] "Amp Peak  3(3p25.2) mutation analysis"
[1] 3
  AMP PEAK  3(3P25.2) MUTATED AMP PEAK  3(3P25.2) WILD-TYPE 
                           18                            35 
  AMP PEAK  3(3P25.2) MUTATED AMP PEAK  3(3P25.2) WILD-TYPE 
                           18                            35 
[1] "Amp Peak  4(4p16.3) mutation analysis"
[1] 3
  AMP PEAK  4(4P16.3) MUTATED AMP PEAK  4(4P16.3) WILD-TYPE 
                           12                            41 
  AMP PEAK  4(4P16.3) MUTATED AMP PEAK  4(4P16.3) WILD-TYPE 
                           12                            41 
[1] "Amp Peak  5(6p22.3) mutation analysis"
[1] 3
  AMP PEAK  5(6P22.3) MUTATED AMP PEAK  5(6P22.3) WILD-TYPE 
                           18                            35 
  AMP PEAK  5(6P22.3) MUTATED AMP PEAK  5(6P22.3) WILD-TYPE 
                           18                            35 
[1] "Amp Peak  6(6q21) mutation analysis"
[1] 3
  AMP PEAK  6(6Q21) MUTATED AMP PEAK  6(6Q21) WILD-TYPE 
                          6                          47 
  AMP PEAK  6(6Q21) MUTATED AMP PEAK  6(6Q21) WILD-TYPE 
                          6                          47 
[1] "Amp Peak  7(7p21.1) mutation analysis"
[1] 3
  AMP PEAK  7(7P21.1) MUTATED AMP PEAK  7(7P21.1) WILD-TYPE 
                           19                            34 
  AMP PEAK  7(7P21.1) MUTATED AMP PEAK  7(7P21.1) WILD-TYPE 
                           19                            34 
[1] "Amp Peak  8(8p11.21) mutation analysis"
[1] 3
  AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE 
                            10                             43 
  AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE 
                            10                             43 
[1] "Amp Peak  9(8q22.3) mutation analysis"
[1] 3
  AMP PEAK  9(8Q22.3) MUTATED AMP PEAK  9(8Q22.3) WILD-TYPE 
                           26                            27 
  AMP PEAK  9(8Q22.3) MUTATED AMP PEAK  9(8Q22.3) WILD-TYPE 
                           26                            27 
[1] "Amp Peak 10(8q24.21) mutation analysis"
[1] 3
  AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE 
                            27                             26 
  AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE 
                            27                             26 
[1] "Amp Peak 11(9p21.3) mutation analysis"
[1] 3
  AMP PEAK 11(9P21.3) MUTATED AMP PEAK 11(9P21.3) WILD-TYPE 
                            9                            44 
  AMP PEAK 11(9P21.3) MUTATED AMP PEAK 11(9P21.3) WILD-TYPE 
                            9                            44 
[1] "Amp Peak 12(10p15.1) mutation analysis"
[1] 3
  AMP PEAK 12(10P15.1) MUTATED AMP PEAK 12(10P15.1) WILD-TYPE 
                            20                             33 
  AMP PEAK 12(10P15.1) MUTATED AMP PEAK 12(10P15.1) WILD-TYPE 
                            20                             33 
[1] "Amp Peak 13(11q13.3) mutation analysis"
[1] 3
  AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE 
                             8                             45 
  AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE 
                             8                             45 
[1] "Amp Peak 14(12p13.33) mutation analysis"
[1] 3
  AMP PEAK 14(12P13.33) MUTATED AMP PEAK 14(12P13.33) WILD-TYPE 
                              8                              45 
  AMP PEAK 14(12P13.33) MUTATED AMP PEAK 14(12P13.33) WILD-TYPE 
                              8                              45 
[1] "Amp Peak 15(12q15) mutation analysis"
[1] 3
  AMP PEAK 15(12Q15) MUTATED AMP PEAK 15(12Q15) WILD-TYPE 
                          17                           36 
  AMP PEAK 15(12Q15) MUTATED AMP PEAK 15(12Q15) WILD-TYPE 
                          17                           36 
[1] "Amp Peak 16(17p11.2) mutation analysis"
[1] 3
  AMP PEAK 16(17P11.2) MUTATED AMP PEAK 16(17P11.2) WILD-TYPE 
                             9                             44 
  AMP PEAK 16(17P11.2) MUTATED AMP PEAK 16(17P11.2) WILD-TYPE 
                             9                             44 
[1] "Amp Peak 17(17q11.2) mutation analysis"
[1] 3
  AMP PEAK 17(17Q11.2) MUTATED AMP PEAK 17(17Q11.2) WILD-TYPE 
                            16                             37 
  AMP PEAK 17(17Q11.2) MUTATED AMP PEAK 17(17Q11.2) WILD-TYPE 
                            16                             37 
[1] "Amp Peak 18(17q11.2) mutation analysis"
[1] 3
  AMP PEAK 18(17Q11.2) MUTATED AMP PEAK 18(17Q11.2) WILD-TYPE 
                            14                             39 
  AMP PEAK 18(17Q11.2) MUTATED AMP PEAK 18(17Q11.2) WILD-TYPE 
                            14                             39 
[1] "Amp Peak 19(17q12) mutation analysis"
[1] 3
  AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE 
                          15                           38 
  AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE 
                          15                           38 
[1] "Amp Peak 20(19q13.2) mutation analysis"
[1] 3
  AMP PEAK 20(19Q13.2) MUTATED AMP PEAK 20(19Q13.2) WILD-TYPE 
                            20                             33 
  AMP PEAK 20(19Q13.2) MUTATED AMP PEAK 20(19Q13.2) WILD-TYPE 
                            20                             33 
[1] "Del Peak  1(2q22.1) mutation analysis"
[1] 3
  DEL PEAK  1(2Q22.1) MUTATED DEL PEAK  1(2Q22.1) WILD-TYPE 
                           12                            41 
  DEL PEAK  1(2Q22.1) MUTATED DEL PEAK  1(2Q22.1) WILD-TYPE 
                           12                            41 
[1] "Del Peak  2(2q34) mutation analysis"
[1] 3
  DEL PEAK  2(2Q34) MUTATED DEL PEAK  2(2Q34) WILD-TYPE 
                         12                          41 
  DEL PEAK  2(2Q34) MUTATED DEL PEAK  2(2Q34) WILD-TYPE 
                         12                          41 
[1] "Del Peak  3(2q37.1) mutation analysis"
[1] 3
  DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE 
                           18                            35 
  DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE 
                           18                            35 
[1] "Del Peak  4(3p21.31) mutation analysis"
[1] 3
  DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE 
                            14                             39 
  DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE 
                            14                             39 
[1] "Del Peak  5(3p11.2) mutation analysis"
[1] 3
  DEL PEAK  5(3P11.2) MUTATED DEL PEAK  5(3P11.2) WILD-TYPE 
                            9                            44 
  DEL PEAK  5(3P11.2) MUTATED DEL PEAK  5(3P11.2) WILD-TYPE 
                            9                            44 
[1] "Del Peak  6(4q22.1) mutation analysis"
[1] 3
  DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE 
                           17                            36 
  DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE 
                           17                            36 
[1] "Del Peak  7(5q11.2) mutation analysis"
[1] 3
  DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE 
                           16                            37 
  DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE 
                           16                            37 
[1] "Del Peak  8(6p25.3) mutation analysis"
[1] 3
  DEL PEAK  8(6P25.3) MUTATED DEL PEAK  8(6P25.3) WILD-TYPE 
                            8                            45 
  DEL PEAK  8(6P25.3) MUTATED DEL PEAK  8(6P25.3) WILD-TYPE 
                            8                            45 
[1] "Del Peak  9(6q21) mutation analysis"
[1] 3
  DEL PEAK  9(6Q21) MUTATED DEL PEAK  9(6Q21) WILD-TYPE 
                         13                          40 
  DEL PEAK  9(6Q21) MUTATED DEL PEAK  9(6Q21) WILD-TYPE 
                         13                          40 
[1] "Del Peak 10(6q25.2) mutation analysis"
[1] 3
  DEL PEAK 10(6Q25.2) MUTATED DEL PEAK 10(6Q25.2) WILD-TYPE 
                           13                            40 
  DEL PEAK 10(6Q25.2) MUTATED DEL PEAK 10(6Q25.2) WILD-TYPE 
                           13                            40 
[1] "Del Peak 11(9p23) mutation analysis"
[1] 3
  DEL PEAK 11(9P23) MUTATED DEL PEAK 11(9P23) WILD-TYPE 
                         17                          36 
  DEL PEAK 11(9P23) MUTATED DEL PEAK 11(9P23) WILD-TYPE 
                         17                          36 
[1] "Del Peak 12(9p21.3) mutation analysis"
[1] 3
  DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE 
                           29                            24 
  DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE 
                           29                            24 
[1] "Del Peak 13(9q22.33) mutation analysis"
[1] 3
  DEL PEAK 13(9Q22.33) MUTATED DEL PEAK 13(9Q22.33) WILD-TYPE 
                            17                             36 
  DEL PEAK 13(9Q22.33) MUTATED DEL PEAK 13(9Q22.33) WILD-TYPE 
                            17                             36 
[1] "Del Peak 14(10q25.2) mutation analysis"
[1] 3
  DEL PEAK 14(10Q25.2) MUTATED DEL PEAK 14(10Q25.2) WILD-TYPE 
                             9                             44 
  DEL PEAK 14(10Q25.2) MUTATED DEL PEAK 14(10Q25.2) WILD-TYPE 
                             9                             44 
[1] "Del Peak 15(12p13.2) mutation analysis"
[1] 3
  DEL PEAK 15(12P13.2) MUTATED DEL PEAK 15(12P13.2) WILD-TYPE 
                             3                             50 
  DEL PEAK 15(12P13.2) MUTATED DEL PEAK 15(12P13.2) WILD-TYPE 
                             3                             50 
[1] "Del Peak 16(13q14.11) mutation analysis"
[1] 3
  DEL PEAK 16(13Q14.11) MUTATED DEL PEAK 16(13Q14.11) WILD-TYPE 
                             11                              42 
  DEL PEAK 16(13Q14.11) MUTATED DEL PEAK 16(13Q14.11) WILD-TYPE 
                             11                              42 
[1] "Del Peak 17(15q13.1) mutation analysis"
[1] 3
  DEL PEAK 17(15Q13.1) MUTATED DEL PEAK 17(15Q13.1) WILD-TYPE 
                            12                             41 
  DEL PEAK 17(15Q13.1) MUTATED DEL PEAK 17(15Q13.1) WILD-TYPE 
                            12                             41 
[1] "Del Peak 18(16p13.3) mutation analysis"
[1] 3
  DEL PEAK 18(16P13.3) MUTATED DEL PEAK 18(16P13.3) WILD-TYPE 
                            14                             39 
  DEL PEAK 18(16P13.3) MUTATED DEL PEAK 18(16P13.3) WILD-TYPE 
                            14                             39 
[1] "Del Peak 19(16q23.1) mutation analysis"
[1] 3
  DEL PEAK 19(16Q23.1) MUTATED DEL PEAK 19(16Q23.1) WILD-TYPE 
                             7                             46 
  DEL PEAK 19(16Q23.1) MUTATED DEL PEAK 19(16Q23.1) WILD-TYPE 
                             7                             46 
[1] "Del Peak 20(17p12) mutation analysis"
[1] 3
  DEL PEAK 20(17P12) MUTATED DEL PEAK 20(17P12) WILD-TYPE 
                          23                           30 
  DEL PEAK 20(17P12) MUTATED DEL PEAK 20(17P12) WILD-TYPE 
                          23                           30 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                     "DAYSTODEATH"                     
 [3] "DAYSTOLASTFOLLOWUP"               "VITALSTATUS"                     
 [5] "DCCUPLOADDATE"                    "PRIMARYSITEOFDESEASE"            
 [7] "GENDER"                           "DATEOFINITIALPATHOLOGICDIAGNOSIS"
 [9] "DAYSTOLASTKNOWNALIVE"             "KARNOFSKYPERFORMANCESCORE"       
[11] "NEOADJUVANTTHERAPY"               "BATCHNUMBER"                     

Input Data has 12 rows and 53 columns.

[1] "Batch" "12"   
[1] "Last Follow UP"
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J 
         389           NA           NA           NA          363           NA 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T 
          NA           NA           NA           NA           NA           NA 
TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-C4-A0EZ TCGA-C4-A0F0 
          NA           NA           NA           NA           NA           59 
TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO 
          61           14           13           21           NA           NA 
TCGA-CU-A0YR TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA 
         219           77           NA          955          273          214 
TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
         271         3616         3056          218          178          202 
TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-E5-A2PC TCGA-FD-A3B3 
          55          322           NA         2291         1108          268 
TCGA-FD-A3B4 TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
         253           71         1497          806          172           NA 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-GD-A2C5 TCGA-H4-A2HO TCGA-H4-A2HQ 
         684          525          234           46          204 
Variable 1:'AGE':	nDistinctValues=30,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=19,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=33,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=11,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=5,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 11:'NEOADJUVANT.THERAPY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'BATCH.NUMBER':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                         "GENDER"                     
[3] "KARNOFSKY.PERFORMANCE.SCORE"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 53 columns, 1 survival variables, and 3 non-survival variables.
AGE, nv=30, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=5, binary=FALSE, numeric=TRUE

Clustering(1) Variable = Amp Peak  1(1p34.2) mutation analysis
D1V1, survival
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-H4-A2HQ 
"AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-H4-A2HQ 
"AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-H4-A2HQ 
"AMP PEAK  1(1P34.2) WILD-TYPE" 
[1] "hr=" "1.1"
D1V2, continuous
D1V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1P34.2) MUTATED      3    6
  AMP PEAK  1(1P34.2) WILD-TYPE   28   16
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  FEMALE                           6                            16
  MALE                             3                            28
D1V4, continuous
[1] "Remove cluster labels:"      "AMP PEAK  1(1P34.2) MUTATED"
clus
  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                            2                             8 
                   TCGA-CF-A27C                    TCGA-DK-A2HX 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-G2-A2EF 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-G2-A2EJ                    TCGA-G2-A2EK 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 

Clustering(2) Variable = Amp Peak  2(1q23.3) mutation analysis
D2V1, survival
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"AMP PEAK  2(1Q23.3) WILD-TYPE"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
"AMP PEAK  2(1Q23.3) WILD-TYPE"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"AMP PEAK  2(1Q23.3) WILD-TYPE"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
  "AMP PEAK  2(1Q23.3) MUTATED"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
"AMP PEAK  2(1Q23.3) WILD-TYPE"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
"AMP PEAK  2(1Q23.3) WILD-TYPE"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
  "AMP PEAK  2(1Q23.3) MUTATED"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
  "AMP PEAK  2(1Q23.3) MUTATED"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
  "AMP PEAK  2(1Q23.3) MUTATED"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-H4-A2HQ 
  "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"AMP PEAK  2(1Q23.3) WILD-TYPE"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
"AMP PEAK  2(1Q23.3) WILD-TYPE"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"AMP PEAK  2(1Q23.3) WILD-TYPE"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
  "AMP PEAK  2(1Q23.3) MUTATED"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
"AMP PEAK  2(1Q23.3) WILD-TYPE"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
"AMP PEAK  2(1Q23.3) WILD-TYPE"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
  "AMP PEAK  2(1Q23.3) MUTATED"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
  "AMP PEAK  2(1Q23.3) MUTATED"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
  "AMP PEAK  2(1Q23.3) MUTATED"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-H4-A2HQ 
  "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"AMP PEAK  2(1Q23.3) WILD-TYPE"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
"AMP PEAK  2(1Q23.3) WILD-TYPE"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"AMP PEAK  2(1Q23.3) WILD-TYPE"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
  "AMP PEAK  2(1Q23.3) MUTATED"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
"AMP PEAK  2(1Q23.3) WILD-TYPE"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
"AMP PEAK  2(1Q23.3) WILD-TYPE"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
  "AMP PEAK  2(1Q23.3) MUTATED"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
  "AMP PEAK  2(1Q23.3) MUTATED"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "AMP PEAK  2(1Q23.3) MUTATED" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK  2(1Q23.3) WILD-TYPE" "AMP PEAK  2(1Q23.3) WILD-TYPE" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
  "AMP PEAK  2(1Q23.3) MUTATED"   "AMP PEAK  2(1Q23.3) MUTATED" 
                   TCGA-H4-A2HQ 
  "AMP PEAK  2(1Q23.3) MUTATED" 
[1] "hr=" "1.4"
D2V2, continuous
D2V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q23.3) MUTATED     14   11
  AMP PEAK  2(1Q23.3) WILD-TYPE   17   11
        clus
vv       AMP PEAK  2(1Q23.3) MUTATED AMP PEAK  2(1Q23.3) WILD-TYPE
  FEMALE                          11                            11
  MALE                            14                            17
D2V4, continuous

Clustering(3) Variable = Amp Peak  3(3p25.2) mutation analysis
D3V1, survival
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK  3(3P25.2) MUTATED" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
  "AMP PEAK  3(3P25.2) MUTATED" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
  "AMP PEAK  3(3P25.2) MUTATED" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
  "AMP PEAK  3(3P25.2) MUTATED" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"AMP PEAK  3(3P25.2) WILD-TYPE"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
  "AMP PEAK  3(3P25.2) MUTATED"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
  "AMP PEAK  3(3P25.2) MUTATED"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
  "AMP PEAK  3(3P25.2) MUTATED" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
"AMP PEAK  3(3P25.2) WILD-TYPE"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
  "AMP PEAK  3(3P25.2) MUTATED" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
  "AMP PEAK  3(3P25.2) MUTATED"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
"AMP PEAK  3(3P25.2) WILD-TYPE"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
"AMP PEAK  3(3P25.2) WILD-TYPE"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK  3(3P25.2) WILD-TYPE"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
"AMP PEAK  3(3P25.2) WILD-TYPE"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-H4-A2HQ 
"AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK  3(3P25.2) MUTATED" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
  "AMP PEAK  3(3P25.2) MUTATED" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
  "AMP PEAK  3(3P25.2) MUTATED" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
  "AMP PEAK  3(3P25.2) MUTATED" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"AMP PEAK  3(3P25.2) WILD-TYPE"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
  "AMP PEAK  3(3P25.2) MUTATED"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
  "AMP PEAK  3(3P25.2) MUTATED"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
  "AMP PEAK  3(3P25.2) MUTATED" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
"AMP PEAK  3(3P25.2) WILD-TYPE"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
  "AMP PEAK  3(3P25.2) MUTATED" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
  "AMP PEAK  3(3P25.2) MUTATED"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
"AMP PEAK  3(3P25.2) WILD-TYPE"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
"AMP PEAK  3(3P25.2) WILD-TYPE"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK  3(3P25.2) WILD-TYPE"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
"AMP PEAK  3(3P25.2) WILD-TYPE"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-H4-A2HQ 
"AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK  3(3P25.2) MUTATED" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
  "AMP PEAK  3(3P25.2) MUTATED" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
  "AMP PEAK  3(3P25.2) MUTATED" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
  "AMP PEAK  3(3P25.2) MUTATED" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"AMP PEAK  3(3P25.2) WILD-TYPE"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
  "AMP PEAK  3(3P25.2) MUTATED"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
  "AMP PEAK  3(3P25.2) MUTATED"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
  "AMP PEAK  3(3P25.2) MUTATED" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
"AMP PEAK  3(3P25.2) WILD-TYPE"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
  "AMP PEAK  3(3P25.2) MUTATED" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
  "AMP PEAK  3(3P25.2) MUTATED"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
"AMP PEAK  3(3P25.2) WILD-TYPE"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
"AMP PEAK  3(3P25.2) WILD-TYPE"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK  3(3P25.2) WILD-TYPE"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
"AMP PEAK  3(3P25.2) WILD-TYPE"   "AMP PEAK  3(3P25.2) MUTATED" 
                   TCGA-H4-A2HQ 
"AMP PEAK  3(3P25.2) WILD-TYPE" 
[1] "hr=" "2.4"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(3P25.2) MUTATED     14    4
  AMP PEAK  3(3P25.2) WILD-TYPE   17   18
        clus
vv       AMP PEAK  3(3P25.2) MUTATED AMP PEAK  3(3P25.2) WILD-TYPE
  FEMALE                           4                            18
  MALE                            14                            17
D3V4, continuous
[1] "Remove cluster labels:"      "AMP PEAK  3(3P25.2) MUTATED"
clus
  AMP PEAK  3(3P25.2) MUTATED AMP PEAK  3(3P25.2) WILD-TYPE 
                            2                             8 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-G2-A2EF 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-G2-A2EJ                    TCGA-G2-A2EK 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 
                   TCGA-G2-A2EL                    TCGA-G2-A2EO 
"AMP PEAK  3(3P25.2) WILD-TYPE" "AMP PEAK  3(3P25.2) WILD-TYPE" 

Clustering(4) Variable = Amp Peak  4(4p16.3) mutation analysis
D4V1, survival
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK  4(4P16.3) MUTATED" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
  "AMP PEAK  4(4P16.3) MUTATED" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
"AMP PEAK  4(4P16.3) WILD-TYPE"   "AMP PEAK  4(4P16.3) MUTATED" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "AMP PEAK  4(4P16.3) MUTATED" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"AMP PEAK  4(4P16.3) WILD-TYPE"   "AMP PEAK  4(4P16.3) MUTATED" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
  "AMP PEAK  4(4P16.3) MUTATED"   "AMP PEAK  4(4P16.3) MUTATED" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
"AMP PEAK  4(4P16.3) WILD-TYPE"   "AMP PEAK  4(4P16.3) MUTATED" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
  "AMP PEAK  4(4P16.3) MUTATED" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "AMP PEAK  4(4P16.3) MUTATED"   "AMP PEAK  4(4P16.3) MUTATED" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
"AMP PEAK  4(4P16.3) WILD-TYPE"   "AMP PEAK  4(4P16.3) MUTATED" 
                   TCGA-H4-A2HQ 
"AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK  4(4P16.3) MUTATED" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
  "AMP PEAK  4(4P16.3) MUTATED" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
"AMP PEAK  4(4P16.3) WILD-TYPE"   "AMP PEAK  4(4P16.3) MUTATED" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "AMP PEAK  4(4P16.3) MUTATED" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"AMP PEAK  4(4P16.3) WILD-TYPE"   "AMP PEAK  4(4P16.3) MUTATED" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
  "AMP PEAK  4(4P16.3) MUTATED"   "AMP PEAK  4(4P16.3) MUTATED" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
"AMP PEAK  4(4P16.3) WILD-TYPE"   "AMP PEAK  4(4P16.3) MUTATED" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
  "AMP PEAK  4(4P16.3) MUTATED" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "AMP PEAK  4(4P16.3) MUTATED"   "AMP PEAK  4(4P16.3) MUTATED" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
"AMP PEAK  4(4P16.3) WILD-TYPE"   "AMP PEAK  4(4P16.3) MUTATED" 
                   TCGA-H4-A2HQ 
"AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK  4(4P16.3) MUTATED" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
  "AMP PEAK  4(4P16.3) MUTATED" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
"AMP PEAK  4(4P16.3) WILD-TYPE"   "AMP PEAK  4(4P16.3) MUTATED" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "AMP PEAK  4(4P16.3) MUTATED" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"AMP PEAK  4(4P16.3) WILD-TYPE"   "AMP PEAK  4(4P16.3) MUTATED" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
  "AMP PEAK  4(4P16.3) MUTATED"   "AMP PEAK  4(4P16.3) MUTATED" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
"AMP PEAK  4(4P16.3) WILD-TYPE"   "AMP PEAK  4(4P16.3) MUTATED" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
  "AMP PEAK  4(4P16.3) MUTATED" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  4(4P16.3) WILD-TYPE" "AMP PEAK  4(4P16.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "AMP PEAK  4(4P16.3) MUTATED"   "AMP PEAK  4(4P16.3) MUTATED" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
"AMP PEAK  4(4P16.3) WILD-TYPE"   "AMP PEAK  4(4P16.3) MUTATED" 
                   TCGA-H4-A2HQ 
"AMP PEAK  4(4P16.3) WILD-TYPE" 
[1] "hr=" "1.5"
D4V2, continuous
D4V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(4P16.3) MUTATED      9    3
  AMP PEAK  4(4P16.3) WILD-TYPE   22   19
        clus
vv       AMP PEAK  4(4P16.3) MUTATED AMP PEAK  4(4P16.3) WILD-TYPE
  FEMALE                           3                            19
  MALE                             9                            22
D4V4, continuous

Clustering(5) Variable = Amp Peak  5(6p22.3) mutation analysis
D5V1, survival
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"AMP PEAK  5(6P22.3) WILD-TYPE" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
  "AMP PEAK  5(6P22.3) MUTATED" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"AMP PEAK  5(6P22.3) WILD-TYPE" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
"AMP PEAK  5(6P22.3) WILD-TYPE" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
"AMP PEAK  5(6P22.3) WILD-TYPE" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
  "AMP PEAK  5(6P22.3) MUTATED" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"AMP PEAK  5(6P22.3) WILD-TYPE" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
  "AMP PEAK  5(6P22.3) MUTATED" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "AMP PEAK  5(6P22.3) MUTATED" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"AMP PEAK  5(6P22.3) WILD-TYPE" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "AMP PEAK  5(6P22.3) MUTATED" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "AMP PEAK  5(6P22.3) MUTATED" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
"AMP PEAK  5(6P22.3) WILD-TYPE" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
  "AMP PEAK  5(6P22.3) MUTATED"   "AMP PEAK  5(6P22.3) MUTATED" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
  "AMP PEAK  5(6P22.3) MUTATED" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
"AMP PEAK  5(6P22.3) WILD-TYPE"   "AMP PEAK  5(6P22.3) MUTATED" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
  "AMP PEAK  5(6P22.3) MUTATED" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"AMP PEAK  5(6P22.3) WILD-TYPE" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
"AMP PEAK  5(6P22.3) WILD-TYPE"   "AMP PEAK  5(6P22.3) MUTATED" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
  "AMP PEAK  5(6P22.3) MUTATED"   "AMP PEAK  5(6P22.3) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"AMP PEAK  5(6P22.3) WILD-TYPE"   "AMP PEAK  5(6P22.3) MUTATED" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
"AMP PEAK  5(6P22.3) WILD-TYPE"   "AMP PEAK  5(6P22.3) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "AMP PEAK  5(6P22.3) MUTATED" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  5(6P22.3) WILD-TYPE" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK  5(6P22.3) WILD-TYPE" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
  "AMP PEAK  5(6P22.3) MUTATED" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-H4-A2HQ 
"AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"AMP PEAK  5(6P22.3) WILD-TYPE" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
  "AMP PEAK  5(6P22.3) MUTATED" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"AMP PEAK  5(6P22.3) WILD-TYPE" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
"AMP PEAK  5(6P22.3) WILD-TYPE" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
"AMP PEAK  5(6P22.3) WILD-TYPE" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
  "AMP PEAK  5(6P22.3) MUTATED" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"AMP PEAK  5(6P22.3) WILD-TYPE" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
  "AMP PEAK  5(6P22.3) MUTATED" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "AMP PEAK  5(6P22.3) MUTATED" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"AMP PEAK  5(6P22.3) WILD-TYPE" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "AMP PEAK  5(6P22.3) MUTATED" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "AMP PEAK  5(6P22.3) MUTATED" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
"AMP PEAK  5(6P22.3) WILD-TYPE" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
  "AMP PEAK  5(6P22.3) MUTATED"   "AMP PEAK  5(6P22.3) MUTATED" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
  "AMP PEAK  5(6P22.3) MUTATED" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
"AMP PEAK  5(6P22.3) WILD-TYPE"   "AMP PEAK  5(6P22.3) MUTATED" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
  "AMP PEAK  5(6P22.3) MUTATED" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"AMP PEAK  5(6P22.3) WILD-TYPE" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
"AMP PEAK  5(6P22.3) WILD-TYPE"   "AMP PEAK  5(6P22.3) MUTATED" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
  "AMP PEAK  5(6P22.3) MUTATED"   "AMP PEAK  5(6P22.3) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"AMP PEAK  5(6P22.3) WILD-TYPE"   "AMP PEAK  5(6P22.3) MUTATED" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
"AMP PEAK  5(6P22.3) WILD-TYPE"   "AMP PEAK  5(6P22.3) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "AMP PEAK  5(6P22.3) MUTATED" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  5(6P22.3) WILD-TYPE" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK  5(6P22.3) WILD-TYPE" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
  "AMP PEAK  5(6P22.3) MUTATED" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-H4-A2HQ 
"AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"AMP PEAK  5(6P22.3) WILD-TYPE" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
  "AMP PEAK  5(6P22.3) MUTATED" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"AMP PEAK  5(6P22.3) WILD-TYPE" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
"AMP PEAK  5(6P22.3) WILD-TYPE" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
"AMP PEAK  5(6P22.3) WILD-TYPE" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
  "AMP PEAK  5(6P22.3) MUTATED" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"AMP PEAK  5(6P22.3) WILD-TYPE" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
  "AMP PEAK  5(6P22.3) MUTATED" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "AMP PEAK  5(6P22.3) MUTATED" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"AMP PEAK  5(6P22.3) WILD-TYPE" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "AMP PEAK  5(6P22.3) MUTATED" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "AMP PEAK  5(6P22.3) MUTATED" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
"AMP PEAK  5(6P22.3) WILD-TYPE" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
  "AMP PEAK  5(6P22.3) MUTATED"   "AMP PEAK  5(6P22.3) MUTATED" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
  "AMP PEAK  5(6P22.3) MUTATED" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
"AMP PEAK  5(6P22.3) WILD-TYPE"   "AMP PEAK  5(6P22.3) MUTATED" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
  "AMP PEAK  5(6P22.3) MUTATED" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"AMP PEAK  5(6P22.3) WILD-TYPE" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
"AMP PEAK  5(6P22.3) WILD-TYPE"   "AMP PEAK  5(6P22.3) MUTATED" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
  "AMP PEAK  5(6P22.3) MUTATED"   "AMP PEAK  5(6P22.3) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"AMP PEAK  5(6P22.3) WILD-TYPE"   "AMP PEAK  5(6P22.3) MUTATED" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
"AMP PEAK  5(6P22.3) WILD-TYPE"   "AMP PEAK  5(6P22.3) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "AMP PEAK  5(6P22.3) MUTATED" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  5(6P22.3) WILD-TYPE" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK  5(6P22.3) WILD-TYPE" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
  "AMP PEAK  5(6P22.3) MUTATED" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-H4-A2HQ 
"AMP PEAK  5(6P22.3) WILD-TYPE" 
[1] "hr=" "1.3"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  5(6P22.3) MUTATED      9    9
  AMP PEAK  5(6P22.3) WILD-TYPE   22   13
        clus
vv       AMP PEAK  5(6P22.3) MUTATED AMP PEAK  5(6P22.3) WILD-TYPE
  FEMALE                           9                            13
  MALE                             9                            22
D5V4, continuous
[1] "Remove cluster labels:"      "AMP PEAK  5(6P22.3) MUTATED"
clus
  AMP PEAK  5(6P22.3) MUTATED AMP PEAK  5(6P22.3) WILD-TYPE 
                            2                             8 
                   TCGA-CF-A27C                    TCGA-DK-A2HX 
"AMP PEAK  5(6P22.3) WILD-TYPE" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-G2-A2EJ 
"AMP PEAK  5(6P22.3) WILD-TYPE" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  5(6P22.3) WILD-TYPE" "AMP PEAK  5(6P22.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK  5(6P22.3) WILD-TYPE" "AMP PEAK  5(6P22.3) WILD-TYPE" 

Clustering(6) Variable = Amp Peak  6(6q21) mutation analysis
D6V1, survival
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BT-A0S7 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-BT-A0YX                  TCGA-BT-A20J 
"AMP PEAK  6(6Q21) WILD-TYPE"   "AMP PEAK  6(6Q21) MUTATED" 
                 TCGA-BT-A20N                  TCGA-BT-A20O 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-BT-A20P                  TCGA-BT-A20Q 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-BT-A20R                  TCGA-BT-A20T 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-BT-A20U                  TCGA-BT-A20V 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-BT-A20W                  TCGA-BT-A20X 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-C4-A0EZ                  TCGA-C4-A0F0 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-C4-A0F6                  TCGA-CF-A1HR 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-CF-A1HS                  TCGA-CF-A27C 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-CU-A0YN                  TCGA-CU-A0YO 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-CU-A0YR                  TCGA-DK-A1A3 
  "AMP PEAK  6(6Q21) MUTATED"   "AMP PEAK  6(6Q21) MUTATED" 
                 TCGA-DK-A1A5                  TCGA-DK-A1A6 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-DK-A1A7                  TCGA-DK-A1AA 
  "AMP PEAK  6(6Q21) MUTATED" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-DK-A1AB                  TCGA-DK-A1AC 
"AMP PEAK  6(6Q21) WILD-TYPE"   "AMP PEAK  6(6Q21) MUTATED" 
                 TCGA-DK-A1AD                  TCGA-DK-A1AE 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-DK-A1AF                  TCGA-DK-A1AG 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-DK-A2HX                  TCGA-DK-A2I1 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-DK-A2I2                  TCGA-DK-A2I6 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-E5-A2PC                  TCGA-FD-A3B3 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FT-A3EE 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-GD-A2C5                  TCGA-H4-A2HO 
  "AMP PEAK  6(6Q21) MUTATED" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-H4-A2HQ 
"AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BT-A0S7 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-BT-A0YX                  TCGA-BT-A20J 
"AMP PEAK  6(6Q21) WILD-TYPE"   "AMP PEAK  6(6Q21) MUTATED" 
                 TCGA-BT-A20N                  TCGA-BT-A20O 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-BT-A20P                  TCGA-BT-A20Q 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-BT-A20R                  TCGA-BT-A20T 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-BT-A20U                  TCGA-BT-A20V 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-BT-A20W                  TCGA-BT-A20X 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-C4-A0EZ                  TCGA-C4-A0F0 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-C4-A0F6                  TCGA-CF-A1HR 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-CF-A1HS                  TCGA-CF-A27C 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-CU-A0YN                  TCGA-CU-A0YO 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-CU-A0YR                  TCGA-DK-A1A3 
  "AMP PEAK  6(6Q21) MUTATED"   "AMP PEAK  6(6Q21) MUTATED" 
                 TCGA-DK-A1A5                  TCGA-DK-A1A6 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-DK-A1A7                  TCGA-DK-A1AA 
  "AMP PEAK  6(6Q21) MUTATED" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-DK-A1AB                  TCGA-DK-A1AC 
"AMP PEAK  6(6Q21) WILD-TYPE"   "AMP PEAK  6(6Q21) MUTATED" 
                 TCGA-DK-A1AD                  TCGA-DK-A1AE 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-DK-A1AF                  TCGA-DK-A1AG 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-DK-A2HX                  TCGA-DK-A2I1 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-DK-A2I2                  TCGA-DK-A2I6 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-E5-A2PC                  TCGA-FD-A3B3 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FT-A3EE 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-GD-A2C5                  TCGA-H4-A2HO 
  "AMP PEAK  6(6Q21) MUTATED" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-H4-A2HQ 
"AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BT-A0S7 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-BT-A0YX                  TCGA-BT-A20J 
"AMP PEAK  6(6Q21) WILD-TYPE"   "AMP PEAK  6(6Q21) MUTATED" 
                 TCGA-BT-A20N                  TCGA-BT-A20O 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-BT-A20P                  TCGA-BT-A20Q 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-BT-A20R                  TCGA-BT-A20T 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-BT-A20U                  TCGA-BT-A20V 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-BT-A20W                  TCGA-BT-A20X 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-C4-A0EZ                  TCGA-C4-A0F0 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-C4-A0F6                  TCGA-CF-A1HR 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-CF-A1HS                  TCGA-CF-A27C 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-CU-A0YN                  TCGA-CU-A0YO 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-CU-A0YR                  TCGA-DK-A1A3 
  "AMP PEAK  6(6Q21) MUTATED"   "AMP PEAK  6(6Q21) MUTATED" 
                 TCGA-DK-A1A5                  TCGA-DK-A1A6 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-DK-A1A7                  TCGA-DK-A1AA 
  "AMP PEAK  6(6Q21) MUTATED" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-DK-A1AB                  TCGA-DK-A1AC 
"AMP PEAK  6(6Q21) WILD-TYPE"   "AMP PEAK  6(6Q21) MUTATED" 
                 TCGA-DK-A1AD                  TCGA-DK-A1AE 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-DK-A1AF                  TCGA-DK-A1AG 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-DK-A2HX                  TCGA-DK-A2I1 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-DK-A2I2                  TCGA-DK-A2I6 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-E5-A2PC                  TCGA-FD-A3B3 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FT-A3EE 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
"AMP PEAK  6(6Q21) WILD-TYPE" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-GD-A2C5                  TCGA-H4-A2HO 
  "AMP PEAK  6(6Q21) MUTATED" "AMP PEAK  6(6Q21) WILD-TYPE" 
                 TCGA-H4-A2HQ 
"AMP PEAK  6(6Q21) WILD-TYPE" 
[1] "hr=" "2.7"
D6V2, continuous
D6V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  6(6Q21) MUTATED      4    2
  AMP PEAK  6(6Q21) WILD-TYPE   27   20
        clus
vv       AMP PEAK  6(6Q21) MUTATED AMP PEAK  6(6Q21) WILD-TYPE
  FEMALE                         2                          20
  MALE                           4                          27
D6V4, continuous

Clustering(7) Variable = Amp Peak  7(7p21.1) mutation analysis
D7V1, survival
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK  7(7P21.1) MUTATED" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
  "AMP PEAK  7(7P21.1) MUTATED"   "AMP PEAK  7(7P21.1) MUTATED" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"AMP PEAK  7(7P21.1) WILD-TYPE" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
  "AMP PEAK  7(7P21.1) MUTATED" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
"AMP PEAK  7(7P21.1) WILD-TYPE" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
"AMP PEAK  7(7P21.1) WILD-TYPE" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"AMP PEAK  7(7P21.1) WILD-TYPE"   "AMP PEAK  7(7P21.1) MUTATED" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
  "AMP PEAK  7(7P21.1) MUTATED" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"AMP PEAK  7(7P21.1) WILD-TYPE" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "AMP PEAK  7(7P21.1) MUTATED" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"AMP PEAK  7(7P21.1) WILD-TYPE" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "AMP PEAK  7(7P21.1) MUTATED"   "AMP PEAK  7(7P21.1) MUTATED" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
"AMP PEAK  7(7P21.1) WILD-TYPE"   "AMP PEAK  7(7P21.1) MUTATED" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
  "AMP PEAK  7(7P21.1) MUTATED" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
  "AMP PEAK  7(7P21.1) MUTATED" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
"AMP PEAK  7(7P21.1) WILD-TYPE"   "AMP PEAK  7(7P21.1) MUTATED" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
"AMP PEAK  7(7P21.1) WILD-TYPE" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"AMP PEAK  7(7P21.1) WILD-TYPE" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
"AMP PEAK  7(7P21.1) WILD-TYPE"   "AMP PEAK  7(7P21.1) MUTATED" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
  "AMP PEAK  7(7P21.1) MUTATED"   "AMP PEAK  7(7P21.1) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"AMP PEAK  7(7P21.1) WILD-TYPE" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
"AMP PEAK  7(7P21.1) WILD-TYPE"   "AMP PEAK  7(7P21.1) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK  7(7P21.1) WILD-TYPE" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  7(7P21.1) WILD-TYPE" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "AMP PEAK  7(7P21.1) MUTATED" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
  "AMP PEAK  7(7P21.1) MUTATED" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-H4-A2HQ 
"AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK  7(7P21.1) MUTATED" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
  "AMP PEAK  7(7P21.1) MUTATED"   "AMP PEAK  7(7P21.1) MUTATED" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"AMP PEAK  7(7P21.1) WILD-TYPE" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
  "AMP PEAK  7(7P21.1) MUTATED" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
"AMP PEAK  7(7P21.1) WILD-TYPE" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
"AMP PEAK  7(7P21.1) WILD-TYPE" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"AMP PEAK  7(7P21.1) WILD-TYPE"   "AMP PEAK  7(7P21.1) MUTATED" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
  "AMP PEAK  7(7P21.1) MUTATED" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"AMP PEAK  7(7P21.1) WILD-TYPE" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "AMP PEAK  7(7P21.1) MUTATED" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"AMP PEAK  7(7P21.1) WILD-TYPE" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "AMP PEAK  7(7P21.1) MUTATED"   "AMP PEAK  7(7P21.1) MUTATED" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
"AMP PEAK  7(7P21.1) WILD-TYPE"   "AMP PEAK  7(7P21.1) MUTATED" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
  "AMP PEAK  7(7P21.1) MUTATED" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
  "AMP PEAK  7(7P21.1) MUTATED" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
"AMP PEAK  7(7P21.1) WILD-TYPE"   "AMP PEAK  7(7P21.1) MUTATED" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
"AMP PEAK  7(7P21.1) WILD-TYPE" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"AMP PEAK  7(7P21.1) WILD-TYPE" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
"AMP PEAK  7(7P21.1) WILD-TYPE"   "AMP PEAK  7(7P21.1) MUTATED" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
  "AMP PEAK  7(7P21.1) MUTATED"   "AMP PEAK  7(7P21.1) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"AMP PEAK  7(7P21.1) WILD-TYPE" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
"AMP PEAK  7(7P21.1) WILD-TYPE"   "AMP PEAK  7(7P21.1) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK  7(7P21.1) WILD-TYPE" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  7(7P21.1) WILD-TYPE" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "AMP PEAK  7(7P21.1) MUTATED" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
  "AMP PEAK  7(7P21.1) MUTATED" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-H4-A2HQ 
"AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK  7(7P21.1) MUTATED" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
  "AMP PEAK  7(7P21.1) MUTATED"   "AMP PEAK  7(7P21.1) MUTATED" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"AMP PEAK  7(7P21.1) WILD-TYPE" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
  "AMP PEAK  7(7P21.1) MUTATED" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
"AMP PEAK  7(7P21.1) WILD-TYPE" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
"AMP PEAK  7(7P21.1) WILD-TYPE" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"AMP PEAK  7(7P21.1) WILD-TYPE"   "AMP PEAK  7(7P21.1) MUTATED" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
  "AMP PEAK  7(7P21.1) MUTATED" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"AMP PEAK  7(7P21.1) WILD-TYPE" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "AMP PEAK  7(7P21.1) MUTATED" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"AMP PEAK  7(7P21.1) WILD-TYPE" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "AMP PEAK  7(7P21.1) MUTATED"   "AMP PEAK  7(7P21.1) MUTATED" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
"AMP PEAK  7(7P21.1) WILD-TYPE"   "AMP PEAK  7(7P21.1) MUTATED" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
  "AMP PEAK  7(7P21.1) MUTATED" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
  "AMP PEAK  7(7P21.1) MUTATED" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
"AMP PEAK  7(7P21.1) WILD-TYPE"   "AMP PEAK  7(7P21.1) MUTATED" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
"AMP PEAK  7(7P21.1) WILD-TYPE" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"AMP PEAK  7(7P21.1) WILD-TYPE" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
"AMP PEAK  7(7P21.1) WILD-TYPE"   "AMP PEAK  7(7P21.1) MUTATED" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
  "AMP PEAK  7(7P21.1) MUTATED"   "AMP PEAK  7(7P21.1) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"AMP PEAK  7(7P21.1) WILD-TYPE" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
"AMP PEAK  7(7P21.1) WILD-TYPE"   "AMP PEAK  7(7P21.1) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK  7(7P21.1) WILD-TYPE" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  7(7P21.1) WILD-TYPE" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "AMP PEAK  7(7P21.1) MUTATED" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
  "AMP PEAK  7(7P21.1) MUTATED" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-H4-A2HQ 
"AMP PEAK  7(7P21.1) WILD-TYPE" 
[1] "hr=" "1.6"
D7V2, continuous
D7V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  7(7P21.1) MUTATED     12    7
  AMP PEAK  7(7P21.1) WILD-TYPE   19   15
        clus
vv       AMP PEAK  7(7P21.1) MUTATED AMP PEAK  7(7P21.1) WILD-TYPE
  FEMALE                           7                            15
  MALE                            12                            19
D7V4, continuous
[1] "Remove cluster labels:"      "AMP PEAK  7(7P21.1) MUTATED"
clus
  AMP PEAK  7(7P21.1) MUTATED AMP PEAK  7(7P21.1) WILD-TYPE 
                            1                             9 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"AMP PEAK  7(7P21.1) WILD-TYPE" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-E5-A2PC 
"AMP PEAK  7(7P21.1) WILD-TYPE" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK  7(7P21.1) WILD-TYPE" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  7(7P21.1) WILD-TYPE" "AMP PEAK  7(7P21.1) WILD-TYPE" 
                   TCGA-G2-A2ES 
"AMP PEAK  7(7P21.1) WILD-TYPE" 

Clustering(8) Variable = Amp Peak  8(8p11.21) mutation analysis
D8V1, survival
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
  "AMP PEAK  8(8P11.21) MUTATED" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
  "AMP PEAK  8(8P11.21) MUTATED" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "AMP PEAK  8(8P11.21) MUTATED" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
"AMP PEAK  8(8P11.21) WILD-TYPE"   "AMP PEAK  8(8P11.21) MUTATED" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
  "AMP PEAK  8(8P11.21) MUTATED" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
  "AMP PEAK  8(8P11.21) MUTATED" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
"AMP PEAK  8(8P11.21) WILD-TYPE"   "AMP PEAK  8(8P11.21) MUTATED" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
"AMP PEAK  8(8P11.21) WILD-TYPE"   "AMP PEAK  8(8P11.21) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"AMP PEAK  8(8P11.21) WILD-TYPE"   "AMP PEAK  8(8P11.21) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"AMP PEAK  8(8P11.21) WILD-TYPE"   "AMP PEAK  8(8P11.21) MUTATED" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-H4-A2HQ 
"AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
  "AMP PEAK  8(8P11.21) MUTATED" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
  "AMP PEAK  8(8P11.21) MUTATED" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "AMP PEAK  8(8P11.21) MUTATED" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
"AMP PEAK  8(8P11.21) WILD-TYPE"   "AMP PEAK  8(8P11.21) MUTATED" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
  "AMP PEAK  8(8P11.21) MUTATED" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
  "AMP PEAK  8(8P11.21) MUTATED" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
"AMP PEAK  8(8P11.21) WILD-TYPE"   "AMP PEAK  8(8P11.21) MUTATED" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
"AMP PEAK  8(8P11.21) WILD-TYPE"   "AMP PEAK  8(8P11.21) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"AMP PEAK  8(8P11.21) WILD-TYPE"   "AMP PEAK  8(8P11.21) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"AMP PEAK  8(8P11.21) WILD-TYPE"   "AMP PEAK  8(8P11.21) MUTATED" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-H4-A2HQ 
"AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
  "AMP PEAK  8(8P11.21) MUTATED" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
  "AMP PEAK  8(8P11.21) MUTATED" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "AMP PEAK  8(8P11.21) MUTATED" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
"AMP PEAK  8(8P11.21) WILD-TYPE"   "AMP PEAK  8(8P11.21) MUTATED" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
  "AMP PEAK  8(8P11.21) MUTATED" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
  "AMP PEAK  8(8P11.21) MUTATED" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
"AMP PEAK  8(8P11.21) WILD-TYPE"   "AMP PEAK  8(8P11.21) MUTATED" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
"AMP PEAK  8(8P11.21) WILD-TYPE"   "AMP PEAK  8(8P11.21) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"AMP PEAK  8(8P11.21) WILD-TYPE"   "AMP PEAK  8(8P11.21) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"AMP PEAK  8(8P11.21) WILD-TYPE"   "AMP PEAK  8(8P11.21) MUTATED" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-H4-A2HQ 
"AMP PEAK  8(8P11.21) WILD-TYPE" 
[1] "hr=" "3.7"
D8V2, continuous
D8V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  8(8P11.21) MUTATED      6    4
  AMP PEAK  8(8P11.21) WILD-TYPE   25   18
        clus
vv       AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE
  FEMALE                            4                             18
  MALE                              6                             25
D8V4, continuous
[1] "Remove cluster labels:"       "AMP PEAK  8(8P11.21) MUTATED"
clus
  AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE 
                             1                              9 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-E5-A2PC 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK  8(8P11.21) WILD-TYPE" "AMP PEAK  8(8P11.21) WILD-TYPE" 
                    TCGA-G2-A2EO 
"AMP PEAK  8(8P11.21) WILD-TYPE" 

Clustering(9) Variable = Amp Peak  9(8q22.3) mutation analysis
D9V1, survival
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK  9(8Q22.3) MUTATED" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
  "AMP PEAK  9(8Q22.3) MUTATED" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"AMP PEAK  9(8Q22.3) WILD-TYPE"   "AMP PEAK  9(8Q22.3) MUTATED" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
  "AMP PEAK  9(8Q22.3) MUTATED" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
"AMP PEAK  9(8Q22.3) WILD-TYPE" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
"AMP PEAK  9(8Q22.3) WILD-TYPE" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"AMP PEAK  9(8Q22.3) WILD-TYPE"   "AMP PEAK  9(8Q22.3) MUTATED" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
  "AMP PEAK  9(8Q22.3) MUTATED"   "AMP PEAK  9(8Q22.3) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "AMP PEAK  9(8Q22.3) MUTATED"   "AMP PEAK  9(8Q22.3) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "AMP PEAK  9(8Q22.3) MUTATED" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "AMP PEAK  9(8Q22.3) MUTATED" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"AMP PEAK  9(8Q22.3) WILD-TYPE" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
  "AMP PEAK  9(8Q22.3) MUTATED" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
  "AMP PEAK  9(8Q22.3) MUTATED"   "AMP PEAK  9(8Q22.3) MUTATED" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
  "AMP PEAK  9(8Q22.3) MUTATED" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
"AMP PEAK  9(8Q22.3) WILD-TYPE"   "AMP PEAK  9(8Q22.3) MUTATED" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
  "AMP PEAK  9(8Q22.3) MUTATED"   "AMP PEAK  9(8Q22.3) MUTATED" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"AMP PEAK  9(8Q22.3) WILD-TYPE" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
"AMP PEAK  9(8Q22.3) WILD-TYPE"   "AMP PEAK  9(8Q22.3) MUTATED" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
"AMP PEAK  9(8Q22.3) WILD-TYPE"   "AMP PEAK  9(8Q22.3) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"AMP PEAK  9(8Q22.3) WILD-TYPE" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
"AMP PEAK  9(8Q22.3) WILD-TYPE"   "AMP PEAK  9(8Q22.3) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK  9(8Q22.3) WILD-TYPE" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
  "AMP PEAK  9(8Q22.3) MUTATED" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "AMP PEAK  9(8Q22.3) MUTATED"   "AMP PEAK  9(8Q22.3) MUTATED" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
"AMP PEAK  9(8Q22.3) WILD-TYPE"   "AMP PEAK  9(8Q22.3) MUTATED" 
                   TCGA-H4-A2HQ 
  "AMP PEAK  9(8Q22.3) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK  9(8Q22.3) MUTATED" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
  "AMP PEAK  9(8Q22.3) MUTATED" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"AMP PEAK  9(8Q22.3) WILD-TYPE"   "AMP PEAK  9(8Q22.3) MUTATED" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
  "AMP PEAK  9(8Q22.3) MUTATED" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
"AMP PEAK  9(8Q22.3) WILD-TYPE" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
"AMP PEAK  9(8Q22.3) WILD-TYPE" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"AMP PEAK  9(8Q22.3) WILD-TYPE"   "AMP PEAK  9(8Q22.3) MUTATED" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
  "AMP PEAK  9(8Q22.3) MUTATED"   "AMP PEAK  9(8Q22.3) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "AMP PEAK  9(8Q22.3) MUTATED"   "AMP PEAK  9(8Q22.3) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "AMP PEAK  9(8Q22.3) MUTATED" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "AMP PEAK  9(8Q22.3) MUTATED" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"AMP PEAK  9(8Q22.3) WILD-TYPE" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
  "AMP PEAK  9(8Q22.3) MUTATED" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
  "AMP PEAK  9(8Q22.3) MUTATED"   "AMP PEAK  9(8Q22.3) MUTATED" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
  "AMP PEAK  9(8Q22.3) MUTATED" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
"AMP PEAK  9(8Q22.3) WILD-TYPE"   "AMP PEAK  9(8Q22.3) MUTATED" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
  "AMP PEAK  9(8Q22.3) MUTATED"   "AMP PEAK  9(8Q22.3) MUTATED" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"AMP PEAK  9(8Q22.3) WILD-TYPE" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
"AMP PEAK  9(8Q22.3) WILD-TYPE"   "AMP PEAK  9(8Q22.3) MUTATED" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
"AMP PEAK  9(8Q22.3) WILD-TYPE"   "AMP PEAK  9(8Q22.3) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"AMP PEAK  9(8Q22.3) WILD-TYPE" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
"AMP PEAK  9(8Q22.3) WILD-TYPE"   "AMP PEAK  9(8Q22.3) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK  9(8Q22.3) WILD-TYPE" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
  "AMP PEAK  9(8Q22.3) MUTATED" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "AMP PEAK  9(8Q22.3) MUTATED"   "AMP PEAK  9(8Q22.3) MUTATED" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
"AMP PEAK  9(8Q22.3) WILD-TYPE"   "AMP PEAK  9(8Q22.3) MUTATED" 
                   TCGA-H4-A2HQ 
  "AMP PEAK  9(8Q22.3) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK  9(8Q22.3) MUTATED" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
  "AMP PEAK  9(8Q22.3) MUTATED" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"AMP PEAK  9(8Q22.3) WILD-TYPE"   "AMP PEAK  9(8Q22.3) MUTATED" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
  "AMP PEAK  9(8Q22.3) MUTATED" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
"AMP PEAK  9(8Q22.3) WILD-TYPE" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
"AMP PEAK  9(8Q22.3) WILD-TYPE" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"AMP PEAK  9(8Q22.3) WILD-TYPE"   "AMP PEAK  9(8Q22.3) MUTATED" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
  "AMP PEAK  9(8Q22.3) MUTATED"   "AMP PEAK  9(8Q22.3) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "AMP PEAK  9(8Q22.3) MUTATED"   "AMP PEAK  9(8Q22.3) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "AMP PEAK  9(8Q22.3) MUTATED" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "AMP PEAK  9(8Q22.3) MUTATED" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"AMP PEAK  9(8Q22.3) WILD-TYPE" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
  "AMP PEAK  9(8Q22.3) MUTATED" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
  "AMP PEAK  9(8Q22.3) MUTATED"   "AMP PEAK  9(8Q22.3) MUTATED" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
  "AMP PEAK  9(8Q22.3) MUTATED" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
"AMP PEAK  9(8Q22.3) WILD-TYPE"   "AMP PEAK  9(8Q22.3) MUTATED" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
  "AMP PEAK  9(8Q22.3) MUTATED"   "AMP PEAK  9(8Q22.3) MUTATED" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"AMP PEAK  9(8Q22.3) WILD-TYPE" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
"AMP PEAK  9(8Q22.3) WILD-TYPE"   "AMP PEAK  9(8Q22.3) MUTATED" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
"AMP PEAK  9(8Q22.3) WILD-TYPE"   "AMP PEAK  9(8Q22.3) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"AMP PEAK  9(8Q22.3) WILD-TYPE" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
"AMP PEAK  9(8Q22.3) WILD-TYPE"   "AMP PEAK  9(8Q22.3) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK  9(8Q22.3) WILD-TYPE" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
  "AMP PEAK  9(8Q22.3) MUTATED" "AMP PEAK  9(8Q22.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "AMP PEAK  9(8Q22.3) MUTATED"   "AMP PEAK  9(8Q22.3) MUTATED" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
"AMP PEAK  9(8Q22.3) WILD-TYPE"   "AMP PEAK  9(8Q22.3) MUTATED" 
                   TCGA-H4-A2HQ 
  "AMP PEAK  9(8Q22.3) MUTATED" 
[1] "hr=" "1.5"
D9V2, continuous
D9V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  9(8Q22.3) MUTATED     18    8
  AMP PEAK  9(8Q22.3) WILD-TYPE   13   14
        clus
vv       AMP PEAK  9(8Q22.3) MUTATED AMP PEAK  9(8Q22.3) WILD-TYPE
  FEMALE                           8                            14
  MALE                            18                            13
D9V4, continuous

Clustering(10) Variable = Amp Peak 10(8q24.21) mutation analysis
D10V1, survival
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "AMP PEAK 10(8Q24.21) MUTATED" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
  "AMP PEAK 10(8Q24.21) MUTATED" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
  "AMP PEAK 10(8Q24.21) MUTATED"   "AMP PEAK 10(8Q24.21) MUTATED" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
  "AMP PEAK 10(8Q24.21) MUTATED" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
"AMP PEAK 10(8Q24.21) WILD-TYPE" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
"AMP PEAK 10(8Q24.21) WILD-TYPE" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"AMP PEAK 10(8Q24.21) WILD-TYPE"   "AMP PEAK 10(8Q24.21) MUTATED" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
  "AMP PEAK 10(8Q24.21) MUTATED"   "AMP PEAK 10(8Q24.21) MUTATED" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "AMP PEAK 10(8Q24.21) MUTATED"   "AMP PEAK 10(8Q24.21) MUTATED" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "AMP PEAK 10(8Q24.21) MUTATED" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "AMP PEAK 10(8Q24.21) MUTATED" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"AMP PEAK 10(8Q24.21) WILD-TYPE" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
  "AMP PEAK 10(8Q24.21) MUTATED" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
  "AMP PEAK 10(8Q24.21) MUTATED"   "AMP PEAK 10(8Q24.21) MUTATED" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
  "AMP PEAK 10(8Q24.21) MUTATED" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
"AMP PEAK 10(8Q24.21) WILD-TYPE"   "AMP PEAK 10(8Q24.21) MUTATED" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
  "AMP PEAK 10(8Q24.21) MUTATED"   "AMP PEAK 10(8Q24.21) MUTATED" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"AMP PEAK 10(8Q24.21) WILD-TYPE" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
"AMP PEAK 10(8Q24.21) WILD-TYPE"   "AMP PEAK 10(8Q24.21) MUTATED" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
"AMP PEAK 10(8Q24.21) WILD-TYPE"   "AMP PEAK 10(8Q24.21) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"AMP PEAK 10(8Q24.21) WILD-TYPE" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"AMP PEAK 10(8Q24.21) WILD-TYPE"   "AMP PEAK 10(8Q24.21) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "AMP PEAK 10(8Q24.21) MUTATED" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
  "AMP PEAK 10(8Q24.21) MUTATED" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK 10(8Q24.21) MUTATED"   "AMP PEAK 10(8Q24.21) MUTATED" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
"AMP PEAK 10(8Q24.21) WILD-TYPE" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "AMP PEAK 10(8Q24.21) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "AMP PEAK 10(8Q24.21) MUTATED" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
  "AMP PEAK 10(8Q24.21) MUTATED" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
  "AMP PEAK 10(8Q24.21) MUTATED"   "AMP PEAK 10(8Q24.21) MUTATED" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
  "AMP PEAK 10(8Q24.21) MUTATED" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
"AMP PEAK 10(8Q24.21) WILD-TYPE" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
"AMP PEAK 10(8Q24.21) WILD-TYPE" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"AMP PEAK 10(8Q24.21) WILD-TYPE"   "AMP PEAK 10(8Q24.21) MUTATED" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
  "AMP PEAK 10(8Q24.21) MUTATED"   "AMP PEAK 10(8Q24.21) MUTATED" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "AMP PEAK 10(8Q24.21) MUTATED"   "AMP PEAK 10(8Q24.21) MUTATED" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "AMP PEAK 10(8Q24.21) MUTATED" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "AMP PEAK 10(8Q24.21) MUTATED" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"AMP PEAK 10(8Q24.21) WILD-TYPE" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
  "AMP PEAK 10(8Q24.21) MUTATED" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
  "AMP PEAK 10(8Q24.21) MUTATED"   "AMP PEAK 10(8Q24.21) MUTATED" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
  "AMP PEAK 10(8Q24.21) MUTATED" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
"AMP PEAK 10(8Q24.21) WILD-TYPE"   "AMP PEAK 10(8Q24.21) MUTATED" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
  "AMP PEAK 10(8Q24.21) MUTATED"   "AMP PEAK 10(8Q24.21) MUTATED" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"AMP PEAK 10(8Q24.21) WILD-TYPE" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
"AMP PEAK 10(8Q24.21) WILD-TYPE"   "AMP PEAK 10(8Q24.21) MUTATED" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
"AMP PEAK 10(8Q24.21) WILD-TYPE"   "AMP PEAK 10(8Q24.21) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"AMP PEAK 10(8Q24.21) WILD-TYPE" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"AMP PEAK 10(8Q24.21) WILD-TYPE"   "AMP PEAK 10(8Q24.21) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "AMP PEAK 10(8Q24.21) MUTATED" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
  "AMP PEAK 10(8Q24.21) MUTATED" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK 10(8Q24.21) MUTATED"   "AMP PEAK 10(8Q24.21) MUTATED" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
"AMP PEAK 10(8Q24.21) WILD-TYPE" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "AMP PEAK 10(8Q24.21) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "AMP PEAK 10(8Q24.21) MUTATED" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
  "AMP PEAK 10(8Q24.21) MUTATED" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
  "AMP PEAK 10(8Q24.21) MUTATED"   "AMP PEAK 10(8Q24.21) MUTATED" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
  "AMP PEAK 10(8Q24.21) MUTATED" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
"AMP PEAK 10(8Q24.21) WILD-TYPE" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
"AMP PEAK 10(8Q24.21) WILD-TYPE" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"AMP PEAK 10(8Q24.21) WILD-TYPE"   "AMP PEAK 10(8Q24.21) MUTATED" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
  "AMP PEAK 10(8Q24.21) MUTATED"   "AMP PEAK 10(8Q24.21) MUTATED" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "AMP PEAK 10(8Q24.21) MUTATED"   "AMP PEAK 10(8Q24.21) MUTATED" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "AMP PEAK 10(8Q24.21) MUTATED" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "AMP PEAK 10(8Q24.21) MUTATED" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"AMP PEAK 10(8Q24.21) WILD-TYPE" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
  "AMP PEAK 10(8Q24.21) MUTATED" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
  "AMP PEAK 10(8Q24.21) MUTATED"   "AMP PEAK 10(8Q24.21) MUTATED" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
  "AMP PEAK 10(8Q24.21) MUTATED" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
"AMP PEAK 10(8Q24.21) WILD-TYPE"   "AMP PEAK 10(8Q24.21) MUTATED" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
  "AMP PEAK 10(8Q24.21) MUTATED"   "AMP PEAK 10(8Q24.21) MUTATED" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"AMP PEAK 10(8Q24.21) WILD-TYPE" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
"AMP PEAK 10(8Q24.21) WILD-TYPE"   "AMP PEAK 10(8Q24.21) MUTATED" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
"AMP PEAK 10(8Q24.21) WILD-TYPE"   "AMP PEAK 10(8Q24.21) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"AMP PEAK 10(8Q24.21) WILD-TYPE" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"AMP PEAK 10(8Q24.21) WILD-TYPE"   "AMP PEAK 10(8Q24.21) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "AMP PEAK 10(8Q24.21) MUTATED" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
  "AMP PEAK 10(8Q24.21) MUTATED" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK 10(8Q24.21) MUTATED"   "AMP PEAK 10(8Q24.21) MUTATED" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
"AMP PEAK 10(8Q24.21) WILD-TYPE" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "AMP PEAK 10(8Q24.21) MUTATED" 
[1] "hr=" "2.1"
D10V2, continuous
D10V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 10(8Q24.21) MUTATED     18    9
  AMP PEAK 10(8Q24.21) WILD-TYPE   13   13
        clus
vv       AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE
  FEMALE                            9                             13
  MALE                             18                             13
D10V4, continuous

Clustering(11) Variable = Amp Peak 11(9p21.3) mutation analysis
D11V1, survival
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
"AMP PEAK 11(9P21.3) WILD-TYPE"   "AMP PEAK 11(9P21.3) MUTATED" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
  "AMP PEAK 11(9P21.3) MUTATED" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"AMP PEAK 11(9P21.3) WILD-TYPE"   "AMP PEAK 11(9P21.3) MUTATED" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
"AMP PEAK 11(9P21.3) WILD-TYPE"   "AMP PEAK 11(9P21.3) MUTATED" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
  "AMP PEAK 11(9P21.3) MUTATED" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
"AMP PEAK 11(9P21.3) WILD-TYPE"   "AMP PEAK 11(9P21.3) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "AMP PEAK 11(9P21.3) MUTATED"   "AMP PEAK 11(9P21.3) MUTATED" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
  "AMP PEAK 11(9P21.3) MUTATED" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-H4-A2HQ 
"AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
"AMP PEAK 11(9P21.3) WILD-TYPE"   "AMP PEAK 11(9P21.3) MUTATED" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
  "AMP PEAK 11(9P21.3) MUTATED" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"AMP PEAK 11(9P21.3) WILD-TYPE"   "AMP PEAK 11(9P21.3) MUTATED" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
"AMP PEAK 11(9P21.3) WILD-TYPE"   "AMP PEAK 11(9P21.3) MUTATED" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
  "AMP PEAK 11(9P21.3) MUTATED" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
"AMP PEAK 11(9P21.3) WILD-TYPE"   "AMP PEAK 11(9P21.3) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "AMP PEAK 11(9P21.3) MUTATED"   "AMP PEAK 11(9P21.3) MUTATED" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
  "AMP PEAK 11(9P21.3) MUTATED" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-H4-A2HQ 
"AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
"AMP PEAK 11(9P21.3) WILD-TYPE"   "AMP PEAK 11(9P21.3) MUTATED" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
  "AMP PEAK 11(9P21.3) MUTATED" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"AMP PEAK 11(9P21.3) WILD-TYPE"   "AMP PEAK 11(9P21.3) MUTATED" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
"AMP PEAK 11(9P21.3) WILD-TYPE"   "AMP PEAK 11(9P21.3) MUTATED" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
  "AMP PEAK 11(9P21.3) MUTATED" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
"AMP PEAK 11(9P21.3) WILD-TYPE"   "AMP PEAK 11(9P21.3) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "AMP PEAK 11(9P21.3) MUTATED"   "AMP PEAK 11(9P21.3) MUTATED" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
  "AMP PEAK 11(9P21.3) MUTATED" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-H4-A2HQ 
"AMP PEAK 11(9P21.3) WILD-TYPE" 
[1] "hr=" "2.7"
D11V2, continuous
D11V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 11(9P21.3) MUTATED      5    4
  AMP PEAK 11(9P21.3) WILD-TYPE   26   18
        clus
vv       AMP PEAK 11(9P21.3) MUTATED AMP PEAK 11(9P21.3) WILD-TYPE
  FEMALE                           4                            18
  MALE                             5                            26
D11V4, continuous
[1] "Remove cluster labels:"      "AMP PEAK 11(9P21.3) MUTATED"
clus
  AMP PEAK 11(9P21.3) MUTATED AMP PEAK 11(9P21.3) WILD-TYPE 
                            2                             8 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-E5-A2PC 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK 11(9P21.3) WILD-TYPE" "AMP PEAK 11(9P21.3) WILD-TYPE" 

Clustering(12) Variable = Amp Peak 12(10p15.1) mutation analysis
D12V1, survival
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "AMP PEAK 12(10P15.1) MUTATED" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
  "AMP PEAK 12(10P15.1) MUTATED" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"AMP PEAK 12(10P15.1) WILD-TYPE" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
  "AMP PEAK 12(10P15.1) MUTATED" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
"AMP PEAK 12(10P15.1) WILD-TYPE"   "AMP PEAK 12(10P15.1) MUTATED" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
  "AMP PEAK 12(10P15.1) MUTATED" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"AMP PEAK 12(10P15.1) WILD-TYPE"   "AMP PEAK 12(10P15.1) MUTATED" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
"AMP PEAK 12(10P15.1) WILD-TYPE" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "AMP PEAK 12(10P15.1) MUTATED" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"AMP PEAK 12(10P15.1) WILD-TYPE" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "AMP PEAK 12(10P15.1) MUTATED" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"AMP PEAK 12(10P15.1) WILD-TYPE" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
"AMP PEAK 12(10P15.1) WILD-TYPE"   "AMP PEAK 12(10P15.1) MUTATED" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
  "AMP PEAK 12(10P15.1) MUTATED"   "AMP PEAK 12(10P15.1) MUTATED" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
"AMP PEAK 12(10P15.1) WILD-TYPE" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
"AMP PEAK 12(10P15.1) WILD-TYPE"   "AMP PEAK 12(10P15.1) MUTATED" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
  "AMP PEAK 12(10P15.1) MUTATED" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"AMP PEAK 12(10P15.1) WILD-TYPE" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
  "AMP PEAK 12(10P15.1) MUTATED"   "AMP PEAK 12(10P15.1) MUTATED" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
"AMP PEAK 12(10P15.1) WILD-TYPE"   "AMP PEAK 12(10P15.1) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"AMP PEAK 12(10P15.1) WILD-TYPE"   "AMP PEAK 12(10P15.1) MUTATED" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"AMP PEAK 12(10P15.1) WILD-TYPE"   "AMP PEAK 12(10P15.1) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK 12(10P15.1) WILD-TYPE" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 12(10P15.1) WILD-TYPE" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK 12(10P15.1) MUTATED"   "AMP PEAK 12(10P15.1) MUTATED" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
"AMP PEAK 12(10P15.1) WILD-TYPE" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-H4-A2HQ 
"AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "AMP PEAK 12(10P15.1) MUTATED" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
  "AMP PEAK 12(10P15.1) MUTATED" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"AMP PEAK 12(10P15.1) WILD-TYPE" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
  "AMP PEAK 12(10P15.1) MUTATED" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
"AMP PEAK 12(10P15.1) WILD-TYPE"   "AMP PEAK 12(10P15.1) MUTATED" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
  "AMP PEAK 12(10P15.1) MUTATED" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"AMP PEAK 12(10P15.1) WILD-TYPE"   "AMP PEAK 12(10P15.1) MUTATED" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
"AMP PEAK 12(10P15.1) WILD-TYPE" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "AMP PEAK 12(10P15.1) MUTATED" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"AMP PEAK 12(10P15.1) WILD-TYPE" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "AMP PEAK 12(10P15.1) MUTATED" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"AMP PEAK 12(10P15.1) WILD-TYPE" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
"AMP PEAK 12(10P15.1) WILD-TYPE"   "AMP PEAK 12(10P15.1) MUTATED" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
  "AMP PEAK 12(10P15.1) MUTATED"   "AMP PEAK 12(10P15.1) MUTATED" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
"AMP PEAK 12(10P15.1) WILD-TYPE" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
"AMP PEAK 12(10P15.1) WILD-TYPE"   "AMP PEAK 12(10P15.1) MUTATED" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
  "AMP PEAK 12(10P15.1) MUTATED" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"AMP PEAK 12(10P15.1) WILD-TYPE" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
  "AMP PEAK 12(10P15.1) MUTATED"   "AMP PEAK 12(10P15.1) MUTATED" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
"AMP PEAK 12(10P15.1) WILD-TYPE"   "AMP PEAK 12(10P15.1) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"AMP PEAK 12(10P15.1) WILD-TYPE"   "AMP PEAK 12(10P15.1) MUTATED" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"AMP PEAK 12(10P15.1) WILD-TYPE"   "AMP PEAK 12(10P15.1) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK 12(10P15.1) WILD-TYPE" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 12(10P15.1) WILD-TYPE" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK 12(10P15.1) MUTATED"   "AMP PEAK 12(10P15.1) MUTATED" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
"AMP PEAK 12(10P15.1) WILD-TYPE" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-H4-A2HQ 
"AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "AMP PEAK 12(10P15.1) MUTATED" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
  "AMP PEAK 12(10P15.1) MUTATED" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"AMP PEAK 12(10P15.1) WILD-TYPE" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
  "AMP PEAK 12(10P15.1) MUTATED" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
"AMP PEAK 12(10P15.1) WILD-TYPE"   "AMP PEAK 12(10P15.1) MUTATED" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
  "AMP PEAK 12(10P15.1) MUTATED" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"AMP PEAK 12(10P15.1) WILD-TYPE"   "AMP PEAK 12(10P15.1) MUTATED" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
"AMP PEAK 12(10P15.1) WILD-TYPE" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "AMP PEAK 12(10P15.1) MUTATED" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"AMP PEAK 12(10P15.1) WILD-TYPE" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "AMP PEAK 12(10P15.1) MUTATED" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"AMP PEAK 12(10P15.1) WILD-TYPE" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
"AMP PEAK 12(10P15.1) WILD-TYPE"   "AMP PEAK 12(10P15.1) MUTATED" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
  "AMP PEAK 12(10P15.1) MUTATED"   "AMP PEAK 12(10P15.1) MUTATED" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
"AMP PEAK 12(10P15.1) WILD-TYPE" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
"AMP PEAK 12(10P15.1) WILD-TYPE"   "AMP PEAK 12(10P15.1) MUTATED" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
  "AMP PEAK 12(10P15.1) MUTATED" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"AMP PEAK 12(10P15.1) WILD-TYPE" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
  "AMP PEAK 12(10P15.1) MUTATED"   "AMP PEAK 12(10P15.1) MUTATED" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
"AMP PEAK 12(10P15.1) WILD-TYPE"   "AMP PEAK 12(10P15.1) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"AMP PEAK 12(10P15.1) WILD-TYPE"   "AMP PEAK 12(10P15.1) MUTATED" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"AMP PEAK 12(10P15.1) WILD-TYPE"   "AMP PEAK 12(10P15.1) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK 12(10P15.1) WILD-TYPE" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 12(10P15.1) WILD-TYPE" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK 12(10P15.1) MUTATED"   "AMP PEAK 12(10P15.1) MUTATED" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
"AMP PEAK 12(10P15.1) WILD-TYPE" "AMP PEAK 12(10P15.1) WILD-TYPE" 
                    TCGA-H4-A2HQ 
"AMP PEAK 12(10P15.1) WILD-TYPE" 
[1] "hr=" "1.6"
D12V2, continuous
D12V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(10P15.1) MUTATED     12    8
  AMP PEAK 12(10P15.1) WILD-TYPE   19   14
        clus
vv       AMP PEAK 12(10P15.1) MUTATED AMP PEAK 12(10P15.1) WILD-TYPE
  FEMALE                            8                             14
  MALE                             12                             19
D12V4, continuous

Clustering(13) Variable = Amp Peak 13(11q13.3) mutation analysis
D13V1, survival
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
  "AMP PEAK 13(11Q13.3) MUTATED" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
  "AMP PEAK 13(11Q13.3) MUTATED" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
  "AMP PEAK 13(11Q13.3) MUTATED"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
"AMP PEAK 13(11Q13.3) WILD-TYPE"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"AMP PEAK 13(11Q13.3) WILD-TYPE"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
  "AMP PEAK 13(11Q13.3) MUTATED" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
  "AMP PEAK 13(11Q13.3) MUTATED" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
  "AMP PEAK 13(11Q13.3) MUTATED" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
  "AMP PEAK 13(11Q13.3) MUTATED"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
"AMP PEAK 13(11Q13.3) WILD-TYPE"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"AMP PEAK 13(11Q13.3) WILD-TYPE"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
  "AMP PEAK 13(11Q13.3) MUTATED" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
  "AMP PEAK 13(11Q13.3) MUTATED" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
  "AMP PEAK 13(11Q13.3) MUTATED" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
  "AMP PEAK 13(11Q13.3) MUTATED"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
"AMP PEAK 13(11Q13.3) WILD-TYPE"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"AMP PEAK 13(11Q13.3) WILD-TYPE"   "AMP PEAK 13(11Q13.3) MUTATED" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
  "AMP PEAK 13(11Q13.3) MUTATED" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "AMP PEAK 13(11Q13.3) MUTATED" 
[1] "hr=" "1.3"
D13V2, continuous
D13V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 13(11Q13.3) MUTATED      5    3
  AMP PEAK 13(11Q13.3) WILD-TYPE   26   19
        clus
vv       AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE
  FEMALE                            3                             19
  MALE                              5                             26
D13V4, continuous
[1] "Remove cluster labels:"       "AMP PEAK 13(11Q13.3) MUTATED"
clus
  AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE 
                             1                              9 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-E5-A2PC 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-G2-A2EO 
"AMP PEAK 13(11Q13.3) WILD-TYPE" 

Clustering(14) Variable = Amp Peak 14(12p13.33) mutation analysis
D14V1, survival
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
  "AMP PEAK 14(12P13.33) MUTATED" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BT-A0S7 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-BT-A0YX                      TCGA-BT-A20J 
"AMP PEAK 14(12P13.33) WILD-TYPE"   "AMP PEAK 14(12P13.33) MUTATED" 
                     TCGA-BT-A20N                      TCGA-BT-A20O 
  "AMP PEAK 14(12P13.33) MUTATED" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-BT-A20P                      TCGA-BT-A20Q 
  "AMP PEAK 14(12P13.33) MUTATED" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-BT-A20R                      TCGA-BT-A20T 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-BT-A20U                      TCGA-BT-A20V 
"AMP PEAK 14(12P13.33) WILD-TYPE"   "AMP PEAK 14(12P13.33) MUTATED" 
                     TCGA-BT-A20W                      TCGA-BT-A20X 
  "AMP PEAK 14(12P13.33) MUTATED" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-C4-A0EZ                      TCGA-C4-A0F0 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-C4-A0F6                      TCGA-CF-A1HR 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-CF-A1HS                      TCGA-CF-A27C 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-CU-A0YN                      TCGA-CU-A0YO 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-CU-A0YR                      TCGA-DK-A1A3 
  "AMP PEAK 14(12P13.33) MUTATED" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-DK-A1A5                      TCGA-DK-A1A6 
"AMP PEAK 14(12P13.33) WILD-TYPE"   "AMP PEAK 14(12P13.33) MUTATED" 
                     TCGA-DK-A1A7                      TCGA-DK-A1AA 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-DK-A1AB                      TCGA-DK-A1AC 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-DK-A1AD                      TCGA-DK-A1AE 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-DK-A1AF                      TCGA-DK-A1AG 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-DK-A2HX                      TCGA-DK-A2I1 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-DK-A2I2                      TCGA-DK-A2I6 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-E5-A2PC                      TCGA-FD-A3B3 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-FD-A3B4                      TCGA-FT-A3EE 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-GD-A2C5                      TCGA-H4-A2HO 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-H4-A2HQ 
"AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
  "AMP PEAK 14(12P13.33) MUTATED" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BT-A0S7 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-BT-A0YX                      TCGA-BT-A20J 
"AMP PEAK 14(12P13.33) WILD-TYPE"   "AMP PEAK 14(12P13.33) MUTATED" 
                     TCGA-BT-A20N                      TCGA-BT-A20O 
  "AMP PEAK 14(12P13.33) MUTATED" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-BT-A20P                      TCGA-BT-A20Q 
  "AMP PEAK 14(12P13.33) MUTATED" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-BT-A20R                      TCGA-BT-A20T 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-BT-A20U                      TCGA-BT-A20V 
"AMP PEAK 14(12P13.33) WILD-TYPE"   "AMP PEAK 14(12P13.33) MUTATED" 
                     TCGA-BT-A20W                      TCGA-BT-A20X 
  "AMP PEAK 14(12P13.33) MUTATED" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-C4-A0EZ                      TCGA-C4-A0F0 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-C4-A0F6                      TCGA-CF-A1HR 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-CF-A1HS                      TCGA-CF-A27C 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-CU-A0YN                      TCGA-CU-A0YO 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-CU-A0YR                      TCGA-DK-A1A3 
  "AMP PEAK 14(12P13.33) MUTATED" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-DK-A1A5                      TCGA-DK-A1A6 
"AMP PEAK 14(12P13.33) WILD-TYPE"   "AMP PEAK 14(12P13.33) MUTATED" 
                     TCGA-DK-A1A7                      TCGA-DK-A1AA 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-DK-A1AB                      TCGA-DK-A1AC 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-DK-A1AD                      TCGA-DK-A1AE 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-DK-A1AF                      TCGA-DK-A1AG 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-DK-A2HX                      TCGA-DK-A2I1 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-DK-A2I2                      TCGA-DK-A2I6 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-E5-A2PC                      TCGA-FD-A3B3 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-FD-A3B4                      TCGA-FT-A3EE 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-GD-A2C5                      TCGA-H4-A2HO 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-H4-A2HQ 
"AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
  "AMP PEAK 14(12P13.33) MUTATED" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BT-A0S7 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-BT-A0YX                      TCGA-BT-A20J 
"AMP PEAK 14(12P13.33) WILD-TYPE"   "AMP PEAK 14(12P13.33) MUTATED" 
                     TCGA-BT-A20N                      TCGA-BT-A20O 
  "AMP PEAK 14(12P13.33) MUTATED" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-BT-A20P                      TCGA-BT-A20Q 
  "AMP PEAK 14(12P13.33) MUTATED" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-BT-A20R                      TCGA-BT-A20T 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-BT-A20U                      TCGA-BT-A20V 
"AMP PEAK 14(12P13.33) WILD-TYPE"   "AMP PEAK 14(12P13.33) MUTATED" 
                     TCGA-BT-A20W                      TCGA-BT-A20X 
  "AMP PEAK 14(12P13.33) MUTATED" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-C4-A0EZ                      TCGA-C4-A0F0 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-C4-A0F6                      TCGA-CF-A1HR 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-CF-A1HS                      TCGA-CF-A27C 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-CU-A0YN                      TCGA-CU-A0YO 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-CU-A0YR                      TCGA-DK-A1A3 
  "AMP PEAK 14(12P13.33) MUTATED" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-DK-A1A5                      TCGA-DK-A1A6 
"AMP PEAK 14(12P13.33) WILD-TYPE"   "AMP PEAK 14(12P13.33) MUTATED" 
                     TCGA-DK-A1A7                      TCGA-DK-A1AA 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-DK-A1AB                      TCGA-DK-A1AC 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-DK-A1AD                      TCGA-DK-A1AE 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-DK-A1AF                      TCGA-DK-A1AG 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-DK-A2HX                      TCGA-DK-A2I1 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-DK-A2I2                      TCGA-DK-A2I6 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-E5-A2PC                      TCGA-FD-A3B3 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-FD-A3B4                      TCGA-FT-A3EE 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-GD-A2C5                      TCGA-H4-A2HO 
"AMP PEAK 14(12P13.33) WILD-TYPE" "AMP PEAK 14(12P13.33) WILD-TYPE" 
                     TCGA-H4-A2HQ 
"AMP PEAK 14(12P13.33) WILD-TYPE" 
[1] "hr=" "1.2"
D14V2, continuous
D14V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 14(12P13.33) MUTATED      6    2
  AMP PEAK 14(12P13.33) WILD-TYPE   25   20
        clus
vv       AMP PEAK 14(12P13.33) MUTATED AMP PEAK 14(12P13.33) WILD-TYPE
  FEMALE                             2                              20
  MALE                               6                              25
D14V4, continuous

Clustering(15) Variable = Amp Peak 15(12q15) mutation analysis
D15V1, survival
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
  "AMP PEAK 15(12Q15) MUTATED" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BT-A0S7 
  "AMP PEAK 15(12Q15) MUTATED"   "AMP PEAK 15(12Q15) MUTATED" 
                  TCGA-BT-A0YX                   TCGA-BT-A20J 
"AMP PEAK 15(12Q15) WILD-TYPE"   "AMP PEAK 15(12Q15) MUTATED" 
                  TCGA-BT-A20N                   TCGA-BT-A20O 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-BT-A20P                   TCGA-BT-A20Q 
  "AMP PEAK 15(12Q15) MUTATED" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-BT-A20R                   TCGA-BT-A20T 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-BT-A20U                   TCGA-BT-A20V 
"AMP PEAK 15(12Q15) WILD-TYPE"   "AMP PEAK 15(12Q15) MUTATED" 
                  TCGA-BT-A20W                   TCGA-BT-A20X 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-C4-A0EZ                   TCGA-C4-A0F0 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-C4-A0F6                   TCGA-CF-A1HR 
  "AMP PEAK 15(12Q15) MUTATED" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-CF-A1HS                   TCGA-CF-A27C 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-CU-A0YN                   TCGA-CU-A0YO 
"AMP PEAK 15(12Q15) WILD-TYPE"   "AMP PEAK 15(12Q15) MUTATED" 
                  TCGA-CU-A0YR                   TCGA-DK-A1A3 
  "AMP PEAK 15(12Q15) MUTATED" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-DK-A1A5                   TCGA-DK-A1A6 
  "AMP PEAK 15(12Q15) MUTATED"   "AMP PEAK 15(12Q15) MUTATED" 
                  TCGA-DK-A1A7                   TCGA-DK-A1AA 
  "AMP PEAK 15(12Q15) MUTATED" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-DK-A1AB                   TCGA-DK-A1AC 
"AMP PEAK 15(12Q15) WILD-TYPE"   "AMP PEAK 15(12Q15) MUTATED" 
                  TCGA-DK-A1AD                   TCGA-DK-A1AE 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-DK-A1AF                   TCGA-DK-A1AG 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-DK-A2HX                   TCGA-DK-A2I1 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-DK-A2I2                   TCGA-DK-A2I6 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-E5-A2PC                   TCGA-FD-A3B3 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-FD-A3B4                   TCGA-FT-A3EE 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
  "AMP PEAK 15(12Q15) MUTATED" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
  "AMP PEAK 15(12Q15) MUTATED" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-GD-A2C5                   TCGA-H4-A2HO 
"AMP PEAK 15(12Q15) WILD-TYPE"   "AMP PEAK 15(12Q15) MUTATED" 
                  TCGA-H4-A2HQ 
  "AMP PEAK 15(12Q15) MUTATED" 
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
  "AMP PEAK 15(12Q15) MUTATED" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BT-A0S7 
  "AMP PEAK 15(12Q15) MUTATED"   "AMP PEAK 15(12Q15) MUTATED" 
                  TCGA-BT-A0YX                   TCGA-BT-A20J 
"AMP PEAK 15(12Q15) WILD-TYPE"   "AMP PEAK 15(12Q15) MUTATED" 
                  TCGA-BT-A20N                   TCGA-BT-A20O 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-BT-A20P                   TCGA-BT-A20Q 
  "AMP PEAK 15(12Q15) MUTATED" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-BT-A20R                   TCGA-BT-A20T 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-BT-A20U                   TCGA-BT-A20V 
"AMP PEAK 15(12Q15) WILD-TYPE"   "AMP PEAK 15(12Q15) MUTATED" 
                  TCGA-BT-A20W                   TCGA-BT-A20X 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-C4-A0EZ                   TCGA-C4-A0F0 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-C4-A0F6                   TCGA-CF-A1HR 
  "AMP PEAK 15(12Q15) MUTATED" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-CF-A1HS                   TCGA-CF-A27C 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-CU-A0YN                   TCGA-CU-A0YO 
"AMP PEAK 15(12Q15) WILD-TYPE"   "AMP PEAK 15(12Q15) MUTATED" 
                  TCGA-CU-A0YR                   TCGA-DK-A1A3 
  "AMP PEAK 15(12Q15) MUTATED" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-DK-A1A5                   TCGA-DK-A1A6 
  "AMP PEAK 15(12Q15) MUTATED"   "AMP PEAK 15(12Q15) MUTATED" 
                  TCGA-DK-A1A7                   TCGA-DK-A1AA 
  "AMP PEAK 15(12Q15) MUTATED" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-DK-A1AB                   TCGA-DK-A1AC 
"AMP PEAK 15(12Q15) WILD-TYPE"   "AMP PEAK 15(12Q15) MUTATED" 
                  TCGA-DK-A1AD                   TCGA-DK-A1AE 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-DK-A1AF                   TCGA-DK-A1AG 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-DK-A2HX                   TCGA-DK-A2I1 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-DK-A2I2                   TCGA-DK-A2I6 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-E5-A2PC                   TCGA-FD-A3B3 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-FD-A3B4                   TCGA-FT-A3EE 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
  "AMP PEAK 15(12Q15) MUTATED" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
  "AMP PEAK 15(12Q15) MUTATED" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-GD-A2C5                   TCGA-H4-A2HO 
"AMP PEAK 15(12Q15) WILD-TYPE"   "AMP PEAK 15(12Q15) MUTATED" 
                  TCGA-H4-A2HQ 
  "AMP PEAK 15(12Q15) MUTATED" 
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
  "AMP PEAK 15(12Q15) MUTATED" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BT-A0S7 
  "AMP PEAK 15(12Q15) MUTATED"   "AMP PEAK 15(12Q15) MUTATED" 
                  TCGA-BT-A0YX                   TCGA-BT-A20J 
"AMP PEAK 15(12Q15) WILD-TYPE"   "AMP PEAK 15(12Q15) MUTATED" 
                  TCGA-BT-A20N                   TCGA-BT-A20O 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-BT-A20P                   TCGA-BT-A20Q 
  "AMP PEAK 15(12Q15) MUTATED" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-BT-A20R                   TCGA-BT-A20T 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-BT-A20U                   TCGA-BT-A20V 
"AMP PEAK 15(12Q15) WILD-TYPE"   "AMP PEAK 15(12Q15) MUTATED" 
                  TCGA-BT-A20W                   TCGA-BT-A20X 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-C4-A0EZ                   TCGA-C4-A0F0 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-C4-A0F6                   TCGA-CF-A1HR 
  "AMP PEAK 15(12Q15) MUTATED" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-CF-A1HS                   TCGA-CF-A27C 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-CU-A0YN                   TCGA-CU-A0YO 
"AMP PEAK 15(12Q15) WILD-TYPE"   "AMP PEAK 15(12Q15) MUTATED" 
                  TCGA-CU-A0YR                   TCGA-DK-A1A3 
  "AMP PEAK 15(12Q15) MUTATED" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-DK-A1A5                   TCGA-DK-A1A6 
  "AMP PEAK 15(12Q15) MUTATED"   "AMP PEAK 15(12Q15) MUTATED" 
                  TCGA-DK-A1A7                   TCGA-DK-A1AA 
  "AMP PEAK 15(12Q15) MUTATED" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-DK-A1AB                   TCGA-DK-A1AC 
"AMP PEAK 15(12Q15) WILD-TYPE"   "AMP PEAK 15(12Q15) MUTATED" 
                  TCGA-DK-A1AD                   TCGA-DK-A1AE 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-DK-A1AF                   TCGA-DK-A1AG 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-DK-A2HX                   TCGA-DK-A2I1 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-DK-A2I2                   TCGA-DK-A2I6 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-E5-A2PC                   TCGA-FD-A3B3 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-FD-A3B4                   TCGA-FT-A3EE 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
  "AMP PEAK 15(12Q15) MUTATED" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
  "AMP PEAK 15(12Q15) MUTATED" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-GD-A2C5                   TCGA-H4-A2HO 
"AMP PEAK 15(12Q15) WILD-TYPE"   "AMP PEAK 15(12Q15) MUTATED" 
                  TCGA-H4-A2HQ 
  "AMP PEAK 15(12Q15) MUTATED" 
[1] "hr=" "1.2"
D15V2, continuous
D15V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 15(12Q15) MUTATED     12    5
  AMP PEAK 15(12Q15) WILD-TYPE   19   17
        clus
vv       AMP PEAK 15(12Q15) MUTATED AMP PEAK 15(12Q15) WILD-TYPE
  FEMALE                          5                           17
  MALE                           12                           19
D15V4, continuous
[1] "Remove cluster labels:"     "AMP PEAK 15(12Q15) MUTATED"
clus
  AMP PEAK 15(12Q15) MUTATED AMP PEAK 15(12Q15) WILD-TYPE 
                           2                            8 
                  TCGA-CF-A1HS                   TCGA-CF-A27C 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-DK-A2HX                   TCGA-E5-A2PC 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-G2-A2EJ                   TCGA-G2-A2EL 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
"AMP PEAK 15(12Q15) WILD-TYPE" "AMP PEAK 15(12Q15) WILD-TYPE" 

Clustering(16) Variable = Amp Peak 16(17p11.2) mutation analysis
D16V1, survival
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
"AMP PEAK 16(17P11.2) WILD-TYPE"   "AMP PEAK 16(17P11.2) MUTATED" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "AMP PEAK 16(17P11.2) MUTATED" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"AMP PEAK 16(17P11.2) WILD-TYPE"   "AMP PEAK 16(17P11.2) MUTATED" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
"AMP PEAK 16(17P11.2) WILD-TYPE"   "AMP PEAK 16(17P11.2) MUTATED" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
"AMP PEAK 16(17P11.2) WILD-TYPE"   "AMP PEAK 16(17P11.2) MUTATED" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
  "AMP PEAK 16(17P11.2) MUTATED" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
  "AMP PEAK 16(17P11.2) MUTATED" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"AMP PEAK 16(17P11.2) WILD-TYPE"   "AMP PEAK 16(17P11.2) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "AMP PEAK 16(17P11.2) MUTATED" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-H4-A2HQ 
"AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
"AMP PEAK 16(17P11.2) WILD-TYPE"   "AMP PEAK 16(17P11.2) MUTATED" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "AMP PEAK 16(17P11.2) MUTATED" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"AMP PEAK 16(17P11.2) WILD-TYPE"   "AMP PEAK 16(17P11.2) MUTATED" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
"AMP PEAK 16(17P11.2) WILD-TYPE"   "AMP PEAK 16(17P11.2) MUTATED" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
"AMP PEAK 16(17P11.2) WILD-TYPE"   "AMP PEAK 16(17P11.2) MUTATED" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
  "AMP PEAK 16(17P11.2) MUTATED" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
  "AMP PEAK 16(17P11.2) MUTATED" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"AMP PEAK 16(17P11.2) WILD-TYPE"   "AMP PEAK 16(17P11.2) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "AMP PEAK 16(17P11.2) MUTATED" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-H4-A2HQ 
"AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
"AMP PEAK 16(17P11.2) WILD-TYPE"   "AMP PEAK 16(17P11.2) MUTATED" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "AMP PEAK 16(17P11.2) MUTATED" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"AMP PEAK 16(17P11.2) WILD-TYPE"   "AMP PEAK 16(17P11.2) MUTATED" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
"AMP PEAK 16(17P11.2) WILD-TYPE"   "AMP PEAK 16(17P11.2) MUTATED" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
"AMP PEAK 16(17P11.2) WILD-TYPE"   "AMP PEAK 16(17P11.2) MUTATED" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
  "AMP PEAK 16(17P11.2) MUTATED" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
  "AMP PEAK 16(17P11.2) MUTATED" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"AMP PEAK 16(17P11.2) WILD-TYPE"   "AMP PEAK 16(17P11.2) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "AMP PEAK 16(17P11.2) MUTATED" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-H4-A2HQ 
"AMP PEAK 16(17P11.2) WILD-TYPE" 
[1] "hr=" "1.4"
D16V2, continuous
D16V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(17P11.2) MUTATED      5    4
  AMP PEAK 16(17P11.2) WILD-TYPE   26   18
        clus
vv       AMP PEAK 16(17P11.2) MUTATED AMP PEAK 16(17P11.2) WILD-TYPE
  FEMALE                            4                             18
  MALE                              5                             26
D16V4, continuous
[1] "Remove cluster labels:"       "AMP PEAK 16(17P11.2) MUTATED"
clus
  AMP PEAK 16(17P11.2) MUTATED AMP PEAK 16(17P11.2) WILD-TYPE 
                             1                              9 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-E5-A2PC 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-G2-A2EJ                     TCGA-G2-A2EK 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-G2-A2EL                     TCGA-G2-A2EO 
"AMP PEAK 16(17P11.2) WILD-TYPE" "AMP PEAK 16(17P11.2) WILD-TYPE" 
                    TCGA-G2-A2ES 
"AMP PEAK 16(17P11.2) WILD-TYPE" 

Clustering(17) Variable = Amp Peak 17(17q11.2) mutation analysis
D17V1, survival
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
  "AMP PEAK 17(17Q11.2) MUTATED"   "AMP PEAK 17(17Q11.2) MUTATED" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
"AMP PEAK 17(17Q11.2) WILD-TYPE"   "AMP PEAK 17(17Q11.2) MUTATED" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "AMP PEAK 17(17Q11.2) MUTATED" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"AMP PEAK 17(17Q11.2) WILD-TYPE"   "AMP PEAK 17(17Q11.2) MUTATED" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
  "AMP PEAK 17(17Q11.2) MUTATED"   "AMP PEAK 17(17Q11.2) MUTATED" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
  "AMP PEAK 17(17Q11.2) MUTATED" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
"AMP PEAK 17(17Q11.2) WILD-TYPE"   "AMP PEAK 17(17Q11.2) MUTATED" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
  "AMP PEAK 17(17Q11.2) MUTATED" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
"AMP PEAK 17(17Q11.2) WILD-TYPE"   "AMP PEAK 17(17Q11.2) MUTATED" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
  "AMP PEAK 17(17Q11.2) MUTATED" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"AMP PEAK 17(17Q11.2) WILD-TYPE"   "AMP PEAK 17(17Q11.2) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK 17(17Q11.2) MUTATED" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
  "AMP PEAK 17(17Q11.2) MUTATED" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "AMP PEAK 17(17Q11.2) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
  "AMP PEAK 17(17Q11.2) MUTATED"   "AMP PEAK 17(17Q11.2) MUTATED" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
"AMP PEAK 17(17Q11.2) WILD-TYPE"   "AMP PEAK 17(17Q11.2) MUTATED" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "AMP PEAK 17(17Q11.2) MUTATED" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"AMP PEAK 17(17Q11.2) WILD-TYPE"   "AMP PEAK 17(17Q11.2) MUTATED" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
  "AMP PEAK 17(17Q11.2) MUTATED"   "AMP PEAK 17(17Q11.2) MUTATED" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
  "AMP PEAK 17(17Q11.2) MUTATED" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
"AMP PEAK 17(17Q11.2) WILD-TYPE"   "AMP PEAK 17(17Q11.2) MUTATED" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
  "AMP PEAK 17(17Q11.2) MUTATED" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
"AMP PEAK 17(17Q11.2) WILD-TYPE"   "AMP PEAK 17(17Q11.2) MUTATED" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
  "AMP PEAK 17(17Q11.2) MUTATED" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"AMP PEAK 17(17Q11.2) WILD-TYPE"   "AMP PEAK 17(17Q11.2) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK 17(17Q11.2) MUTATED" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
  "AMP PEAK 17(17Q11.2) MUTATED" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "AMP PEAK 17(17Q11.2) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
  "AMP PEAK 17(17Q11.2) MUTATED"   "AMP PEAK 17(17Q11.2) MUTATED" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
"AMP PEAK 17(17Q11.2) WILD-TYPE"   "AMP PEAK 17(17Q11.2) MUTATED" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "AMP PEAK 17(17Q11.2) MUTATED" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"AMP PEAK 17(17Q11.2) WILD-TYPE"   "AMP PEAK 17(17Q11.2) MUTATED" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
  "AMP PEAK 17(17Q11.2) MUTATED"   "AMP PEAK 17(17Q11.2) MUTATED" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
  "AMP PEAK 17(17Q11.2) MUTATED" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
"AMP PEAK 17(17Q11.2) WILD-TYPE"   "AMP PEAK 17(17Q11.2) MUTATED" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
  "AMP PEAK 17(17Q11.2) MUTATED" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
"AMP PEAK 17(17Q11.2) WILD-TYPE"   "AMP PEAK 17(17Q11.2) MUTATED" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
  "AMP PEAK 17(17Q11.2) MUTATED" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"AMP PEAK 17(17Q11.2) WILD-TYPE"   "AMP PEAK 17(17Q11.2) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK 17(17Q11.2) MUTATED" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
  "AMP PEAK 17(17Q11.2) MUTATED" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "AMP PEAK 17(17Q11.2) MUTATED" 
[1] "hr=" "1.5"
D17V2, continuous
D17V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(17Q11.2) MUTATED      8    8
  AMP PEAK 17(17Q11.2) WILD-TYPE   23   14
        clus
vv       AMP PEAK 17(17Q11.2) MUTATED AMP PEAK 17(17Q11.2) WILD-TYPE
  FEMALE                            8                             14
  MALE                              8                             23
D17V4, continuous
[1] "Remove cluster labels:"       "AMP PEAK 17(17Q11.2) MUTATED"
clus
  AMP PEAK 17(17Q11.2) MUTATED AMP PEAK 17(17Q11.2) WILD-TYPE 
                             1                              9 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-E5-A2PC 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 17(17Q11.2) WILD-TYPE" "AMP PEAK 17(17Q11.2) WILD-TYPE" 
                    TCGA-G2-A2ES 
"AMP PEAK 17(17Q11.2) WILD-TYPE" 

Clustering(18) Variable = Amp Peak 18(17q11.2) mutation analysis
D18V1, survival
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
  "AMP PEAK 18(17Q11.2) MUTATED"   "AMP PEAK 18(17Q11.2) MUTATED" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "AMP PEAK 18(17Q11.2) MUTATED" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"AMP PEAK 18(17Q11.2) WILD-TYPE"   "AMP PEAK 18(17Q11.2) MUTATED" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "AMP PEAK 18(17Q11.2) MUTATED" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
"AMP PEAK 18(17Q11.2) WILD-TYPE"   "AMP PEAK 18(17Q11.2) MUTATED" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
  "AMP PEAK 18(17Q11.2) MUTATED" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
"AMP PEAK 18(17Q11.2) WILD-TYPE"   "AMP PEAK 18(17Q11.2) MUTATED" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
  "AMP PEAK 18(17Q11.2) MUTATED" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
  "AMP PEAK 18(17Q11.2) MUTATED" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"AMP PEAK 18(17Q11.2) WILD-TYPE"   "AMP PEAK 18(17Q11.2) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "AMP PEAK 18(17Q11.2) MUTATED" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
  "AMP PEAK 18(17Q11.2) MUTATED" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "AMP PEAK 18(17Q11.2) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
  "AMP PEAK 18(17Q11.2) MUTATED"   "AMP PEAK 18(17Q11.2) MUTATED" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "AMP PEAK 18(17Q11.2) MUTATED" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"AMP PEAK 18(17Q11.2) WILD-TYPE"   "AMP PEAK 18(17Q11.2) MUTATED" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "AMP PEAK 18(17Q11.2) MUTATED" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
"AMP PEAK 18(17Q11.2) WILD-TYPE"   "AMP PEAK 18(17Q11.2) MUTATED" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
  "AMP PEAK 18(17Q11.2) MUTATED" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
"AMP PEAK 18(17Q11.2) WILD-TYPE"   "AMP PEAK 18(17Q11.2) MUTATED" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
  "AMP PEAK 18(17Q11.2) MUTATED" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
  "AMP PEAK 18(17Q11.2) MUTATED" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"AMP PEAK 18(17Q11.2) WILD-TYPE"   "AMP PEAK 18(17Q11.2) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "AMP PEAK 18(17Q11.2) MUTATED" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
  "AMP PEAK 18(17Q11.2) MUTATED" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "AMP PEAK 18(17Q11.2) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
  "AMP PEAK 18(17Q11.2) MUTATED"   "AMP PEAK 18(17Q11.2) MUTATED" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "AMP PEAK 18(17Q11.2) MUTATED" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"AMP PEAK 18(17Q11.2) WILD-TYPE"   "AMP PEAK 18(17Q11.2) MUTATED" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "AMP PEAK 18(17Q11.2) MUTATED" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
"AMP PEAK 18(17Q11.2) WILD-TYPE"   "AMP PEAK 18(17Q11.2) MUTATED" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
  "AMP PEAK 18(17Q11.2) MUTATED" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
"AMP PEAK 18(17Q11.2) WILD-TYPE"   "AMP PEAK 18(17Q11.2) MUTATED" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
  "AMP PEAK 18(17Q11.2) MUTATED" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
  "AMP PEAK 18(17Q11.2) MUTATED" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"AMP PEAK 18(17Q11.2) WILD-TYPE"   "AMP PEAK 18(17Q11.2) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "AMP PEAK 18(17Q11.2) MUTATED" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
  "AMP PEAK 18(17Q11.2) MUTATED" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "AMP PEAK 18(17Q11.2) MUTATED" 
[1] "hr=" "2.2"
D18V2, continuous
D18V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 18(17Q11.2) MUTATED      6    8
  AMP PEAK 18(17Q11.2) WILD-TYPE   25   14
        clus
vv       AMP PEAK 18(17Q11.2) MUTATED AMP PEAK 18(17Q11.2) WILD-TYPE
  FEMALE                            8                             14
  MALE                              6                             25
D18V4, continuous
[1] "Remove cluster labels:"       "AMP PEAK 18(17Q11.2) MUTATED"
clus
  AMP PEAK 18(17Q11.2) MUTATED AMP PEAK 18(17Q11.2) WILD-TYPE 
                             2                              8 
                    TCGA-CF-A27C                     TCGA-DK-A2HX 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-G2-A2EJ 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"AMP PEAK 18(17Q11.2) WILD-TYPE" "AMP PEAK 18(17Q11.2) WILD-TYPE" 

Clustering(19) Variable = Amp Peak 19(17q12) mutation analysis
D19V1, survival
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BT-A0S7 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-BT-A0YX                   TCGA-BT-A20J 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-BT-A20N                   TCGA-BT-A20O 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-BT-A20P                   TCGA-BT-A20Q 
  "AMP PEAK 19(17Q12) MUTATED"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-BT-A20R                   TCGA-BT-A20T 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-BT-A20U                   TCGA-BT-A20V 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-BT-A20W                   TCGA-BT-A20X 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-C4-A0EZ                   TCGA-C4-A0F0 
  "AMP PEAK 19(17Q12) MUTATED" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-C4-A0F6                   TCGA-CF-A1HR 
"AMP PEAK 19(17Q12) WILD-TYPE"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-CF-A1HS                   TCGA-CF-A27C 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-CU-A0YN                   TCGA-CU-A0YO 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-CU-A0YR                   TCGA-DK-A1A3 
  "AMP PEAK 19(17Q12) MUTATED" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-DK-A1A5                   TCGA-DK-A1A6 
  "AMP PEAK 19(17Q12) MUTATED"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-DK-A1A7                   TCGA-DK-A1AA 
  "AMP PEAK 19(17Q12) MUTATED" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-DK-A1AB                   TCGA-DK-A1AC 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-DK-A1AD                   TCGA-DK-A1AE 
  "AMP PEAK 19(17Q12) MUTATED" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-DK-A1AF                   TCGA-DK-A1AG 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-DK-A2HX                   TCGA-DK-A2I1 
"AMP PEAK 19(17Q12) WILD-TYPE"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-DK-A2I2                   TCGA-DK-A2I6 
  "AMP PEAK 19(17Q12) MUTATED"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-E5-A2PC                   TCGA-FD-A3B3 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-FD-A3B4                   TCGA-FT-A3EE 
"AMP PEAK 19(17Q12) WILD-TYPE"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-GD-A2C5                   TCGA-H4-A2HO 
"AMP PEAK 19(17Q12) WILD-TYPE"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-H4-A2HQ 
  "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BT-A0S7 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-BT-A0YX                   TCGA-BT-A20J 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-BT-A20N                   TCGA-BT-A20O 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-BT-A20P                   TCGA-BT-A20Q 
  "AMP PEAK 19(17Q12) MUTATED"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-BT-A20R                   TCGA-BT-A20T 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-BT-A20U                   TCGA-BT-A20V 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-BT-A20W                   TCGA-BT-A20X 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-C4-A0EZ                   TCGA-C4-A0F0 
  "AMP PEAK 19(17Q12) MUTATED" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-C4-A0F6                   TCGA-CF-A1HR 
"AMP PEAK 19(17Q12) WILD-TYPE"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-CF-A1HS                   TCGA-CF-A27C 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-CU-A0YN                   TCGA-CU-A0YO 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-CU-A0YR                   TCGA-DK-A1A3 
  "AMP PEAK 19(17Q12) MUTATED" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-DK-A1A5                   TCGA-DK-A1A6 
  "AMP PEAK 19(17Q12) MUTATED"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-DK-A1A7                   TCGA-DK-A1AA 
  "AMP PEAK 19(17Q12) MUTATED" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-DK-A1AB                   TCGA-DK-A1AC 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-DK-A1AD                   TCGA-DK-A1AE 
  "AMP PEAK 19(17Q12) MUTATED" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-DK-A1AF                   TCGA-DK-A1AG 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-DK-A2HX                   TCGA-DK-A2I1 
"AMP PEAK 19(17Q12) WILD-TYPE"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-DK-A2I2                   TCGA-DK-A2I6 
  "AMP PEAK 19(17Q12) MUTATED"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-E5-A2PC                   TCGA-FD-A3B3 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-FD-A3B4                   TCGA-FT-A3EE 
"AMP PEAK 19(17Q12) WILD-TYPE"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-GD-A2C5                   TCGA-H4-A2HO 
"AMP PEAK 19(17Q12) WILD-TYPE"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-H4-A2HQ 
  "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BT-A0S7 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-BT-A0YX                   TCGA-BT-A20J 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-BT-A20N                   TCGA-BT-A20O 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-BT-A20P                   TCGA-BT-A20Q 
  "AMP PEAK 19(17Q12) MUTATED"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-BT-A20R                   TCGA-BT-A20T 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-BT-A20U                   TCGA-BT-A20V 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-BT-A20W                   TCGA-BT-A20X 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-C4-A0EZ                   TCGA-C4-A0F0 
  "AMP PEAK 19(17Q12) MUTATED" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-C4-A0F6                   TCGA-CF-A1HR 
"AMP PEAK 19(17Q12) WILD-TYPE"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-CF-A1HS                   TCGA-CF-A27C 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-CU-A0YN                   TCGA-CU-A0YO 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-CU-A0YR                   TCGA-DK-A1A3 
  "AMP PEAK 19(17Q12) MUTATED" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-DK-A1A5                   TCGA-DK-A1A6 
  "AMP PEAK 19(17Q12) MUTATED"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-DK-A1A7                   TCGA-DK-A1AA 
  "AMP PEAK 19(17Q12) MUTATED" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-DK-A1AB                   TCGA-DK-A1AC 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-DK-A1AD                   TCGA-DK-A1AE 
  "AMP PEAK 19(17Q12) MUTATED" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-DK-A1AF                   TCGA-DK-A1AG 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-DK-A2HX                   TCGA-DK-A2I1 
"AMP PEAK 19(17Q12) WILD-TYPE"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-DK-A2I2                   TCGA-DK-A2I6 
  "AMP PEAK 19(17Q12) MUTATED"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-E5-A2PC                   TCGA-FD-A3B3 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-FD-A3B4                   TCGA-FT-A3EE 
"AMP PEAK 19(17Q12) WILD-TYPE"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-GD-A2C5                   TCGA-H4-A2HO 
"AMP PEAK 19(17Q12) WILD-TYPE"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-H4-A2HQ 
  "AMP PEAK 19(17Q12) MUTATED" 
[1] "hr=" "1.4"
D19V2, continuous
D19V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 19(17Q12) MUTATED      8    7
  AMP PEAK 19(17Q12) WILD-TYPE   23   15
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  FEMALE                          7                           15
  MALE                            8                           23
D19V4, continuous

Clustering(20) Variable = Amp Peak 20(19q13.2) mutation analysis
D20V1, survival
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 20(19Q13.2) WILD-TYPE" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
"AMP PEAK 20(19Q13.2) WILD-TYPE" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"AMP PEAK 20(19Q13.2) WILD-TYPE"   "AMP PEAK 20(19Q13.2) MUTATED" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
  "AMP PEAK 20(19Q13.2) MUTATED" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
"AMP PEAK 20(19Q13.2) WILD-TYPE" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
  "AMP PEAK 20(19Q13.2) MUTATED" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"AMP PEAK 20(19Q13.2) WILD-TYPE"   "AMP PEAK 20(19Q13.2) MUTATED" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
  "AMP PEAK 20(19Q13.2) MUTATED" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "AMP PEAK 20(19Q13.2) MUTATED" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "AMP PEAK 20(19Q13.2) MUTATED" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "AMP PEAK 20(19Q13.2) MUTATED" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"AMP PEAK 20(19Q13.2) WILD-TYPE" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
"AMP PEAK 20(19Q13.2) WILD-TYPE" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
  "AMP PEAK 20(19Q13.2) MUTATED"   "AMP PEAK 20(19Q13.2) MUTATED" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
  "AMP PEAK 20(19Q13.2) MUTATED" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
  "AMP PEAK 20(19Q13.2) MUTATED"   "AMP PEAK 20(19Q13.2) MUTATED" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
  "AMP PEAK 20(19Q13.2) MUTATED" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"AMP PEAK 20(19Q13.2) WILD-TYPE" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
  "AMP PEAK 20(19Q13.2) MUTATED" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
"AMP PEAK 20(19Q13.2) WILD-TYPE"   "AMP PEAK 20(19Q13.2) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"AMP PEAK 20(19Q13.2) WILD-TYPE" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"AMP PEAK 20(19Q13.2) WILD-TYPE"   "AMP PEAK 20(19Q13.2) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "AMP PEAK 20(19Q13.2) MUTATED" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 20(19Q13.2) WILD-TYPE" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK 20(19Q13.2) MUTATED" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
"AMP PEAK 20(19Q13.2) WILD-TYPE" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "AMP PEAK 20(19Q13.2) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 20(19Q13.2) WILD-TYPE" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
"AMP PEAK 20(19Q13.2) WILD-TYPE" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"AMP PEAK 20(19Q13.2) WILD-TYPE"   "AMP PEAK 20(19Q13.2) MUTATED" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
  "AMP PEAK 20(19Q13.2) MUTATED" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
"AMP PEAK 20(19Q13.2) WILD-TYPE" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
  "AMP PEAK 20(19Q13.2) MUTATED" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"AMP PEAK 20(19Q13.2) WILD-TYPE"   "AMP PEAK 20(19Q13.2) MUTATED" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
  "AMP PEAK 20(19Q13.2) MUTATED" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "AMP PEAK 20(19Q13.2) MUTATED" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "AMP PEAK 20(19Q13.2) MUTATED" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "AMP PEAK 20(19Q13.2) MUTATED" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"AMP PEAK 20(19Q13.2) WILD-TYPE" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
"AMP PEAK 20(19Q13.2) WILD-TYPE" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
  "AMP PEAK 20(19Q13.2) MUTATED"   "AMP PEAK 20(19Q13.2) MUTATED" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
  "AMP PEAK 20(19Q13.2) MUTATED" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
  "AMP PEAK 20(19Q13.2) MUTATED"   "AMP PEAK 20(19Q13.2) MUTATED" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
  "AMP PEAK 20(19Q13.2) MUTATED" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"AMP PEAK 20(19Q13.2) WILD-TYPE" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
  "AMP PEAK 20(19Q13.2) MUTATED" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
"AMP PEAK 20(19Q13.2) WILD-TYPE"   "AMP PEAK 20(19Q13.2) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"AMP PEAK 20(19Q13.2) WILD-TYPE" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"AMP PEAK 20(19Q13.2) WILD-TYPE"   "AMP PEAK 20(19Q13.2) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "AMP PEAK 20(19Q13.2) MUTATED" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 20(19Q13.2) WILD-TYPE" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK 20(19Q13.2) MUTATED" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
"AMP PEAK 20(19Q13.2) WILD-TYPE" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "AMP PEAK 20(19Q13.2) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 20(19Q13.2) WILD-TYPE" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
"AMP PEAK 20(19Q13.2) WILD-TYPE" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"AMP PEAK 20(19Q13.2) WILD-TYPE"   "AMP PEAK 20(19Q13.2) MUTATED" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
  "AMP PEAK 20(19Q13.2) MUTATED" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
"AMP PEAK 20(19Q13.2) WILD-TYPE" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
  "AMP PEAK 20(19Q13.2) MUTATED" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"AMP PEAK 20(19Q13.2) WILD-TYPE"   "AMP PEAK 20(19Q13.2) MUTATED" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
  "AMP PEAK 20(19Q13.2) MUTATED" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "AMP PEAK 20(19Q13.2) MUTATED" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "AMP PEAK 20(19Q13.2) MUTATED" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "AMP PEAK 20(19Q13.2) MUTATED" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"AMP PEAK 20(19Q13.2) WILD-TYPE" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
"AMP PEAK 20(19Q13.2) WILD-TYPE" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
  "AMP PEAK 20(19Q13.2) MUTATED"   "AMP PEAK 20(19Q13.2) MUTATED" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
  "AMP PEAK 20(19Q13.2) MUTATED" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
  "AMP PEAK 20(19Q13.2) MUTATED"   "AMP PEAK 20(19Q13.2) MUTATED" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
  "AMP PEAK 20(19Q13.2) MUTATED" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"AMP PEAK 20(19Q13.2) WILD-TYPE" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
  "AMP PEAK 20(19Q13.2) MUTATED" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
"AMP PEAK 20(19Q13.2) WILD-TYPE"   "AMP PEAK 20(19Q13.2) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"AMP PEAK 20(19Q13.2) WILD-TYPE" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"AMP PEAK 20(19Q13.2) WILD-TYPE"   "AMP PEAK 20(19Q13.2) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "AMP PEAK 20(19Q13.2) MUTATED" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 20(19Q13.2) WILD-TYPE" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK 20(19Q13.2) MUTATED" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
"AMP PEAK 20(19Q13.2) WILD-TYPE" "AMP PEAK 20(19Q13.2) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "AMP PEAK 20(19Q13.2) MUTATED" 
[1] "hr=" "1.7"
D20V2, continuous
D20V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(19Q13.2) MUTATED     10   10
  AMP PEAK 20(19Q13.2) WILD-TYPE   21   12
        clus
vv       AMP PEAK 20(19Q13.2) MUTATED AMP PEAK 20(19Q13.2) WILD-TYPE
  FEMALE                           10                             12
  MALE                             10                             21
D20V4, continuous

Clustering(21) Variable = Del Peak  1(2q22.1) mutation analysis
D21V1, survival
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  1(2Q22.1) WILD-TYPE"   "DEL PEAK  1(2Q22.1) MUTATED" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
  "DEL PEAK  1(2Q22.1) MUTATED" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"DEL PEAK  1(2Q22.1) WILD-TYPE"   "DEL PEAK  1(2Q22.1) MUTATED" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "DEL PEAK  1(2Q22.1) MUTATED" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "DEL PEAK  1(2Q22.1) MUTATED" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "DEL PEAK  1(2Q22.1) MUTATED" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
"DEL PEAK  1(2Q22.1) WILD-TYPE"   "DEL PEAK  1(2Q22.1) MUTATED" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
  "DEL PEAK  1(2Q22.1) MUTATED"   "DEL PEAK  1(2Q22.1) MUTATED" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  1(2Q22.1) MUTATED"   "DEL PEAK  1(2Q22.1) MUTATED" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK  1(2Q22.1) WILD-TYPE"   "DEL PEAK  1(2Q22.1) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-H4-A2HQ 
"DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  1(2Q22.1) WILD-TYPE"   "DEL PEAK  1(2Q22.1) MUTATED" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
  "DEL PEAK  1(2Q22.1) MUTATED" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"DEL PEAK  1(2Q22.1) WILD-TYPE"   "DEL PEAK  1(2Q22.1) MUTATED" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "DEL PEAK  1(2Q22.1) MUTATED" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "DEL PEAK  1(2Q22.1) MUTATED" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "DEL PEAK  1(2Q22.1) MUTATED" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
"DEL PEAK  1(2Q22.1) WILD-TYPE"   "DEL PEAK  1(2Q22.1) MUTATED" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
  "DEL PEAK  1(2Q22.1) MUTATED"   "DEL PEAK  1(2Q22.1) MUTATED" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  1(2Q22.1) MUTATED"   "DEL PEAK  1(2Q22.1) MUTATED" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK  1(2Q22.1) WILD-TYPE"   "DEL PEAK  1(2Q22.1) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-H4-A2HQ 
"DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  1(2Q22.1) WILD-TYPE"   "DEL PEAK  1(2Q22.1) MUTATED" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
  "DEL PEAK  1(2Q22.1) MUTATED" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"DEL PEAK  1(2Q22.1) WILD-TYPE"   "DEL PEAK  1(2Q22.1) MUTATED" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "DEL PEAK  1(2Q22.1) MUTATED" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "DEL PEAK  1(2Q22.1) MUTATED" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "DEL PEAK  1(2Q22.1) MUTATED" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
"DEL PEAK  1(2Q22.1) WILD-TYPE"   "DEL PEAK  1(2Q22.1) MUTATED" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
  "DEL PEAK  1(2Q22.1) MUTATED"   "DEL PEAK  1(2Q22.1) MUTATED" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  1(2Q22.1) MUTATED"   "DEL PEAK  1(2Q22.1) MUTATED" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK  1(2Q22.1) WILD-TYPE"   "DEL PEAK  1(2Q22.1) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
"DEL PEAK  1(2Q22.1) WILD-TYPE" "DEL PEAK  1(2Q22.1) WILD-TYPE" 
                   TCGA-H4-A2HQ 
"DEL PEAK  1(2Q22.1) WILD-TYPE" 
[1] "hr=" "1.2"
D21V2, continuous
D21V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  1(2Q22.1) MUTATED      4    8
  DEL PEAK  1(2Q22.1) WILD-TYPE   27   14
        clus
vv       DEL PEAK  1(2Q22.1) MUTATED DEL PEAK  1(2Q22.1) WILD-TYPE
  FEMALE                           8                            14
  MALE                             4                            27
D21V4, continuous

Clustering(22) Variable = Del Peak  2(2q34) mutation analysis
D22V1, survival
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BT-A0S7 
  "DEL PEAK  2(2Q34) MUTATED" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-BT-A0YX                  TCGA-BT-A20J 
"DEL PEAK  2(2Q34) WILD-TYPE"   "DEL PEAK  2(2Q34) MUTATED" 
                 TCGA-BT-A20N                  TCGA-BT-A20O 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-BT-A20P                  TCGA-BT-A20Q 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-BT-A20R                  TCGA-BT-A20T 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-BT-A20U                  TCGA-BT-A20V 
"DEL PEAK  2(2Q34) WILD-TYPE"   "DEL PEAK  2(2Q34) MUTATED" 
                 TCGA-BT-A20W                  TCGA-BT-A20X 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-C4-A0EZ                  TCGA-C4-A0F0 
  "DEL PEAK  2(2Q34) MUTATED" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-C4-A0F6                  TCGA-CF-A1HR 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-CF-A1HS                  TCGA-CF-A27C 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-CU-A0YN                  TCGA-CU-A0YO 
  "DEL PEAK  2(2Q34) MUTATED" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-CU-A0YR                  TCGA-DK-A1A3 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-DK-A1A5                  TCGA-DK-A1A6 
  "DEL PEAK  2(2Q34) MUTATED" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-DK-A1A7                  TCGA-DK-A1AA 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-DK-A1AB                  TCGA-DK-A1AC 
"DEL PEAK  2(2Q34) WILD-TYPE"   "DEL PEAK  2(2Q34) MUTATED" 
                 TCGA-DK-A1AD                  TCGA-DK-A1AE 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-DK-A1AF                  TCGA-DK-A1AG 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-DK-A2HX                  TCGA-DK-A2I1 
  "DEL PEAK  2(2Q34) MUTATED"   "DEL PEAK  2(2Q34) MUTATED" 
                 TCGA-DK-A2I2                  TCGA-DK-A2I6 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-E5-A2PC                  TCGA-FD-A3B3 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FT-A3EE 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
  "DEL PEAK  2(2Q34) MUTATED" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
  "DEL PEAK  2(2Q34) MUTATED"   "DEL PEAK  2(2Q34) MUTATED" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-GD-A2C5                  TCGA-H4-A2HO 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-H4-A2HQ 
"DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BT-A0S7 
  "DEL PEAK  2(2Q34) MUTATED" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-BT-A0YX                  TCGA-BT-A20J 
"DEL PEAK  2(2Q34) WILD-TYPE"   "DEL PEAK  2(2Q34) MUTATED" 
                 TCGA-BT-A20N                  TCGA-BT-A20O 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-BT-A20P                  TCGA-BT-A20Q 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-BT-A20R                  TCGA-BT-A20T 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-BT-A20U                  TCGA-BT-A20V 
"DEL PEAK  2(2Q34) WILD-TYPE"   "DEL PEAK  2(2Q34) MUTATED" 
                 TCGA-BT-A20W                  TCGA-BT-A20X 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-C4-A0EZ                  TCGA-C4-A0F0 
  "DEL PEAK  2(2Q34) MUTATED" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-C4-A0F6                  TCGA-CF-A1HR 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-CF-A1HS                  TCGA-CF-A27C 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-CU-A0YN                  TCGA-CU-A0YO 
  "DEL PEAK  2(2Q34) MUTATED" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-CU-A0YR                  TCGA-DK-A1A3 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-DK-A1A5                  TCGA-DK-A1A6 
  "DEL PEAK  2(2Q34) MUTATED" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-DK-A1A7                  TCGA-DK-A1AA 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-DK-A1AB                  TCGA-DK-A1AC 
"DEL PEAK  2(2Q34) WILD-TYPE"   "DEL PEAK  2(2Q34) MUTATED" 
                 TCGA-DK-A1AD                  TCGA-DK-A1AE 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-DK-A1AF                  TCGA-DK-A1AG 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-DK-A2HX                  TCGA-DK-A2I1 
  "DEL PEAK  2(2Q34) MUTATED"   "DEL PEAK  2(2Q34) MUTATED" 
                 TCGA-DK-A2I2                  TCGA-DK-A2I6 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-E5-A2PC                  TCGA-FD-A3B3 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FT-A3EE 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
  "DEL PEAK  2(2Q34) MUTATED" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
  "DEL PEAK  2(2Q34) MUTATED"   "DEL PEAK  2(2Q34) MUTATED" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-GD-A2C5                  TCGA-H4-A2HO 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-H4-A2HQ 
"DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BT-A0S7 
  "DEL PEAK  2(2Q34) MUTATED" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-BT-A0YX                  TCGA-BT-A20J 
"DEL PEAK  2(2Q34) WILD-TYPE"   "DEL PEAK  2(2Q34) MUTATED" 
                 TCGA-BT-A20N                  TCGA-BT-A20O 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-BT-A20P                  TCGA-BT-A20Q 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-BT-A20R                  TCGA-BT-A20T 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-BT-A20U                  TCGA-BT-A20V 
"DEL PEAK  2(2Q34) WILD-TYPE"   "DEL PEAK  2(2Q34) MUTATED" 
                 TCGA-BT-A20W                  TCGA-BT-A20X 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-C4-A0EZ                  TCGA-C4-A0F0 
  "DEL PEAK  2(2Q34) MUTATED" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-C4-A0F6                  TCGA-CF-A1HR 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-CF-A1HS                  TCGA-CF-A27C 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-CU-A0YN                  TCGA-CU-A0YO 
  "DEL PEAK  2(2Q34) MUTATED" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-CU-A0YR                  TCGA-DK-A1A3 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-DK-A1A5                  TCGA-DK-A1A6 
  "DEL PEAK  2(2Q34) MUTATED" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-DK-A1A7                  TCGA-DK-A1AA 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-DK-A1AB                  TCGA-DK-A1AC 
"DEL PEAK  2(2Q34) WILD-TYPE"   "DEL PEAK  2(2Q34) MUTATED" 
                 TCGA-DK-A1AD                  TCGA-DK-A1AE 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-DK-A1AF                  TCGA-DK-A1AG 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-DK-A2HX                  TCGA-DK-A2I1 
  "DEL PEAK  2(2Q34) MUTATED"   "DEL PEAK  2(2Q34) MUTATED" 
                 TCGA-DK-A2I2                  TCGA-DK-A2I6 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-E5-A2PC                  TCGA-FD-A3B3 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FT-A3EE 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
  "DEL PEAK  2(2Q34) MUTATED" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
  "DEL PEAK  2(2Q34) MUTATED"   "DEL PEAK  2(2Q34) MUTATED" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-GD-A2C5                  TCGA-H4-A2HO 
"DEL PEAK  2(2Q34) WILD-TYPE" "DEL PEAK  2(2Q34) WILD-TYPE" 
                 TCGA-H4-A2HQ 
"DEL PEAK  2(2Q34) WILD-TYPE" 
[1] "hr=" "1.5"
D22V2, continuous
D22V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  2(2Q34) MUTATED      8    4
  DEL PEAK  2(2Q34) WILD-TYPE   23   18
        clus
vv       DEL PEAK  2(2Q34) MUTATED DEL PEAK  2(2Q34) WILD-TYPE
  FEMALE                         4                          18
  MALE                           8                          23
D22V4, continuous

Clustering(23) Variable = Del Peak  3(2q37.1) mutation analysis
D23V1, survival
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-H4-A2HQ 
"DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-H4-A2HQ 
"DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-H4-A2HQ 
"DEL PEAK  3(2Q37.1) WILD-TYPE" 
[1] "hr=" "1.3"
D23V2, continuous
D23V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q37.1) MUTATED     14    4
  DEL PEAK  3(2Q37.1) WILD-TYPE   17   18
        clus
vv       DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE
  FEMALE                           4                            18
  MALE                            14                            17
D23V4, continuous

Clustering(24) Variable = Del Peak  4(3p21.31) mutation analysis
D24V1, survival
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"DEL PEAK  4(3P21.31) WILD-TYPE"   "DEL PEAK  4(3P21.31) MUTATED" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
"DEL PEAK  4(3P21.31) WILD-TYPE"   "DEL PEAK  4(3P21.31) MUTATED" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"DEL PEAK  4(3P21.31) WILD-TYPE"   "DEL PEAK  4(3P21.31) MUTATED" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
"DEL PEAK  4(3P21.31) WILD-TYPE"   "DEL PEAK  4(3P21.31) MUTATED" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "DEL PEAK  4(3P21.31) MUTATED" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
"DEL PEAK  4(3P21.31) WILD-TYPE"   "DEL PEAK  4(3P21.31) MUTATED" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
  "DEL PEAK  4(3P21.31) MUTATED" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "DEL PEAK  4(3P21.31) MUTATED" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
  "DEL PEAK  4(3P21.31) MUTATED" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK  4(3P21.31) MUTATED"   "DEL PEAK  4(3P21.31) MUTATED" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK  4(3P21.31) WILD-TYPE"   "DEL PEAK  4(3P21.31) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK  4(3P21.31) WILD-TYPE"   "DEL PEAK  4(3P21.31) MUTATED" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "DEL PEAK  4(3P21.31) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"DEL PEAK  4(3P21.31) WILD-TYPE"   "DEL PEAK  4(3P21.31) MUTATED" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
"DEL PEAK  4(3P21.31) WILD-TYPE"   "DEL PEAK  4(3P21.31) MUTATED" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"DEL PEAK  4(3P21.31) WILD-TYPE"   "DEL PEAK  4(3P21.31) MUTATED" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
"DEL PEAK  4(3P21.31) WILD-TYPE"   "DEL PEAK  4(3P21.31) MUTATED" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "DEL PEAK  4(3P21.31) MUTATED" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
"DEL PEAK  4(3P21.31) WILD-TYPE"   "DEL PEAK  4(3P21.31) MUTATED" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
  "DEL PEAK  4(3P21.31) MUTATED" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "DEL PEAK  4(3P21.31) MUTATED" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
  "DEL PEAK  4(3P21.31) MUTATED" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK  4(3P21.31) MUTATED"   "DEL PEAK  4(3P21.31) MUTATED" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK  4(3P21.31) WILD-TYPE"   "DEL PEAK  4(3P21.31) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK  4(3P21.31) WILD-TYPE"   "DEL PEAK  4(3P21.31) MUTATED" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "DEL PEAK  4(3P21.31) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"DEL PEAK  4(3P21.31) WILD-TYPE"   "DEL PEAK  4(3P21.31) MUTATED" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
"DEL PEAK  4(3P21.31) WILD-TYPE"   "DEL PEAK  4(3P21.31) MUTATED" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"DEL PEAK  4(3P21.31) WILD-TYPE"   "DEL PEAK  4(3P21.31) MUTATED" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
"DEL PEAK  4(3P21.31) WILD-TYPE"   "DEL PEAK  4(3P21.31) MUTATED" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "DEL PEAK  4(3P21.31) MUTATED" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
"DEL PEAK  4(3P21.31) WILD-TYPE"   "DEL PEAK  4(3P21.31) MUTATED" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
  "DEL PEAK  4(3P21.31) MUTATED" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "DEL PEAK  4(3P21.31) MUTATED" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
  "DEL PEAK  4(3P21.31) MUTATED" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK  4(3P21.31) MUTATED"   "DEL PEAK  4(3P21.31) MUTATED" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK  4(3P21.31) WILD-TYPE"   "DEL PEAK  4(3P21.31) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK  4(3P21.31) WILD-TYPE"   "DEL PEAK  4(3P21.31) MUTATED" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
"DEL PEAK  4(3P21.31) WILD-TYPE" "DEL PEAK  4(3P21.31) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "DEL PEAK  4(3P21.31) MUTATED" 
[1] "hr=" "2.1"
D24V2, continuous
D24V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  4(3P21.31) MUTATED      7    7
  DEL PEAK  4(3P21.31) WILD-TYPE   24   15
        clus
vv       DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  FEMALE                            7                             15
  MALE                              7                             24
D24V4, continuous

Clustering(25) Variable = Del Peak  5(3p11.2) mutation analysis
D25V1, survival
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"DEL PEAK  5(3P11.2) WILD-TYPE"   "DEL PEAK  5(3P11.2) MUTATED" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
  "DEL PEAK  5(3P11.2) MUTATED" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
  "DEL PEAK  5(3P11.2) MUTATED" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
  "DEL PEAK  5(3P11.2) MUTATED" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
  "DEL PEAK  5(3P11.2) MUTATED" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "DEL PEAK  5(3P11.2) MUTATED" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
  "DEL PEAK  5(3P11.2) MUTATED" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"DEL PEAK  5(3P11.2) WILD-TYPE"   "DEL PEAK  5(3P11.2) MUTATED" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "DEL PEAK  5(3P11.2) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"DEL PEAK  5(3P11.2) WILD-TYPE"   "DEL PEAK  5(3P11.2) MUTATED" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
  "DEL PEAK  5(3P11.2) MUTATED" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
  "DEL PEAK  5(3P11.2) MUTATED" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
  "DEL PEAK  5(3P11.2) MUTATED" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
  "DEL PEAK  5(3P11.2) MUTATED" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "DEL PEAK  5(3P11.2) MUTATED" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
  "DEL PEAK  5(3P11.2) MUTATED" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"DEL PEAK  5(3P11.2) WILD-TYPE"   "DEL PEAK  5(3P11.2) MUTATED" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "DEL PEAK  5(3P11.2) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"DEL PEAK  5(3P11.2) WILD-TYPE"   "DEL PEAK  5(3P11.2) MUTATED" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
  "DEL PEAK  5(3P11.2) MUTATED" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
  "DEL PEAK  5(3P11.2) MUTATED" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
  "DEL PEAK  5(3P11.2) MUTATED" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
  "DEL PEAK  5(3P11.2) MUTATED" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "DEL PEAK  5(3P11.2) MUTATED" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
  "DEL PEAK  5(3P11.2) MUTATED" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"DEL PEAK  5(3P11.2) WILD-TYPE"   "DEL PEAK  5(3P11.2) MUTATED" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "DEL PEAK  5(3P11.2) MUTATED" 
[1] "hr=" "2.4"
D25V2, continuous
D25V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(3P11.2) MUTATED      2    7
  DEL PEAK  5(3P11.2) WILD-TYPE   29   15
        clus
vv       DEL PEAK  5(3P11.2) MUTATED DEL PEAK  5(3P11.2) WILD-TYPE
  FEMALE                           7                            15
  MALE                             2                            29
D25V4, continuous
[1] "Remove cluster labels:"      "DEL PEAK  5(3P11.2) MUTATED"
clus
  DEL PEAK  5(3P11.2) MUTATED DEL PEAK  5(3P11.2) WILD-TYPE 
                            2                             8 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-G2-A2EF 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  5(3P11.2) WILD-TYPE" "DEL PEAK  5(3P11.2) WILD-TYPE" 

Clustering(26) Variable = Del Peak  6(4q22.1) mutation analysis
D26V1, survival
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
  "DEL PEAK  6(4Q22.1) MUTATED"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
  "DEL PEAK  6(4Q22.1) MUTATED"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
  "DEL PEAK  6(4Q22.1) MUTATED"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
  "DEL PEAK  6(4Q22.1) MUTATED"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
  "DEL PEAK  6(4Q22.1) MUTATED"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
  "DEL PEAK  6(4Q22.1) MUTATED"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "DEL PEAK  6(4Q22.1) MUTATED" 
[1] "hr=" "1"  
D26V2, continuous
D26V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(4Q22.1) MUTATED      7   10
  DEL PEAK  6(4Q22.1) WILD-TYPE   24   12
        clus
vv       DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE
  FEMALE                          10                            12
  MALE                             7                            24
D26V4, continuous

Clustering(27) Variable = Del Peak  7(5q11.2) mutation analysis
D27V1, survival
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "DEL PEAK  7(5Q11.2) MUTATED" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
"DEL PEAK  7(5Q11.2) WILD-TYPE" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"DEL PEAK  7(5Q11.2) WILD-TYPE"   "DEL PEAK  7(5Q11.2) MUTATED" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
  "DEL PEAK  7(5Q11.2) MUTATED" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
"DEL PEAK  7(5Q11.2) WILD-TYPE" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
"DEL PEAK  7(5Q11.2) WILD-TYPE"   "DEL PEAK  7(5Q11.2) MUTATED" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"DEL PEAK  7(5Q11.2) WILD-TYPE"   "DEL PEAK  7(5Q11.2) MUTATED" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
"DEL PEAK  7(5Q11.2) WILD-TYPE" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK  7(5Q11.2) WILD-TYPE" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "DEL PEAK  7(5Q11.2) MUTATED" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "DEL PEAK  7(5Q11.2) MUTATED" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"DEL PEAK  7(5Q11.2) WILD-TYPE" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
"DEL PEAK  7(5Q11.2) WILD-TYPE" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
  "DEL PEAK  7(5Q11.2) MUTATED" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
  "DEL PEAK  7(5Q11.2) MUTATED" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
"DEL PEAK  7(5Q11.2) WILD-TYPE" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
  "DEL PEAK  7(5Q11.2) MUTATED" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"DEL PEAK  7(5Q11.2) WILD-TYPE" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
"DEL PEAK  7(5Q11.2) WILD-TYPE"   "DEL PEAK  7(5Q11.2) MUTATED" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
"DEL PEAK  7(5Q11.2) WILD-TYPE" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "DEL PEAK  7(5Q11.2) MUTATED" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
"DEL PEAK  7(5Q11.2) WILD-TYPE" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  7(5Q11.2) MUTATED" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK  7(5Q11.2) WILD-TYPE"   "DEL PEAK  7(5Q11.2) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  7(5Q11.2) WILD-TYPE" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
  "DEL PEAK  7(5Q11.2) MUTATED" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "DEL PEAK  7(5Q11.2) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "DEL PEAK  7(5Q11.2) MUTATED" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
"DEL PEAK  7(5Q11.2) WILD-TYPE" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"DEL PEAK  7(5Q11.2) WILD-TYPE"   "DEL PEAK  7(5Q11.2) MUTATED" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
  "DEL PEAK  7(5Q11.2) MUTATED" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
"DEL PEAK  7(5Q11.2) WILD-TYPE" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
"DEL PEAK  7(5Q11.2) WILD-TYPE"   "DEL PEAK  7(5Q11.2) MUTATED" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"DEL PEAK  7(5Q11.2) WILD-TYPE"   "DEL PEAK  7(5Q11.2) MUTATED" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
"DEL PEAK  7(5Q11.2) WILD-TYPE" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK  7(5Q11.2) WILD-TYPE" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "DEL PEAK  7(5Q11.2) MUTATED" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "DEL PEAK  7(5Q11.2) MUTATED" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"DEL PEAK  7(5Q11.2) WILD-TYPE" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
"DEL PEAK  7(5Q11.2) WILD-TYPE" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
  "DEL PEAK  7(5Q11.2) MUTATED" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
  "DEL PEAK  7(5Q11.2) MUTATED" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
"DEL PEAK  7(5Q11.2) WILD-TYPE" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
  "DEL PEAK  7(5Q11.2) MUTATED" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"DEL PEAK  7(5Q11.2) WILD-TYPE" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
"DEL PEAK  7(5Q11.2) WILD-TYPE"   "DEL PEAK  7(5Q11.2) MUTATED" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
"DEL PEAK  7(5Q11.2) WILD-TYPE" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "DEL PEAK  7(5Q11.2) MUTATED" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
"DEL PEAK  7(5Q11.2) WILD-TYPE" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  7(5Q11.2) MUTATED" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK  7(5Q11.2) WILD-TYPE"   "DEL PEAK  7(5Q11.2) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  7(5Q11.2) WILD-TYPE" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
  "DEL PEAK  7(5Q11.2) MUTATED" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "DEL PEAK  7(5Q11.2) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "DEL PEAK  7(5Q11.2) MUTATED" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
"DEL PEAK  7(5Q11.2) WILD-TYPE" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"DEL PEAK  7(5Q11.2) WILD-TYPE"   "DEL PEAK  7(5Q11.2) MUTATED" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
  "DEL PEAK  7(5Q11.2) MUTATED" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
"DEL PEAK  7(5Q11.2) WILD-TYPE" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
"DEL PEAK  7(5Q11.2) WILD-TYPE"   "DEL PEAK  7(5Q11.2) MUTATED" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"DEL PEAK  7(5Q11.2) WILD-TYPE"   "DEL PEAK  7(5Q11.2) MUTATED" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
"DEL PEAK  7(5Q11.2) WILD-TYPE" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK  7(5Q11.2) WILD-TYPE" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "DEL PEAK  7(5Q11.2) MUTATED" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "DEL PEAK  7(5Q11.2) MUTATED" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"DEL PEAK  7(5Q11.2) WILD-TYPE" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
"DEL PEAK  7(5Q11.2) WILD-TYPE" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
  "DEL PEAK  7(5Q11.2) MUTATED" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
  "DEL PEAK  7(5Q11.2) MUTATED" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
"DEL PEAK  7(5Q11.2) WILD-TYPE" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
  "DEL PEAK  7(5Q11.2) MUTATED" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"DEL PEAK  7(5Q11.2) WILD-TYPE" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
"DEL PEAK  7(5Q11.2) WILD-TYPE"   "DEL PEAK  7(5Q11.2) MUTATED" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
"DEL PEAK  7(5Q11.2) WILD-TYPE" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "DEL PEAK  7(5Q11.2) MUTATED" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
"DEL PEAK  7(5Q11.2) WILD-TYPE" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  7(5Q11.2) MUTATED" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK  7(5Q11.2) WILD-TYPE"   "DEL PEAK  7(5Q11.2) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  7(5Q11.2) WILD-TYPE" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
  "DEL PEAK  7(5Q11.2) MUTATED" "DEL PEAK  7(5Q11.2) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "DEL PEAK  7(5Q11.2) MUTATED" 
[1] "hr=" "1.6"
D27V2, continuous
D27V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(5Q11.2) MUTATED      8    8
  DEL PEAK  7(5Q11.2) WILD-TYPE   23   14
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  FEMALE                           8                            14
  MALE                             8                            23
D27V4, continuous

Clustering(28) Variable = Del Peak  8(6p25.3) mutation analysis
D28V1, survival
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"DEL PEAK  8(6P25.3) WILD-TYPE"   "DEL PEAK  8(6P25.3) MUTATED" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
"DEL PEAK  8(6P25.3) WILD-TYPE"   "DEL PEAK  8(6P25.3) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
  "DEL PEAK  8(6P25.3) MUTATED" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
"DEL PEAK  8(6P25.3) WILD-TYPE"   "DEL PEAK  8(6P25.3) MUTATED" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
  "DEL PEAK  8(6P25.3) MUTATED"   "DEL PEAK  8(6P25.3) MUTATED" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
"DEL PEAK  8(6P25.3) WILD-TYPE"   "DEL PEAK  8(6P25.3) MUTATED" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
  "DEL PEAK  8(6P25.3) MUTATED" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-H4-A2HQ 
"DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"DEL PEAK  8(6P25.3) WILD-TYPE"   "DEL PEAK  8(6P25.3) MUTATED" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
"DEL PEAK  8(6P25.3) WILD-TYPE"   "DEL PEAK  8(6P25.3) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
  "DEL PEAK  8(6P25.3) MUTATED" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
"DEL PEAK  8(6P25.3) WILD-TYPE"   "DEL PEAK  8(6P25.3) MUTATED" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
  "DEL PEAK  8(6P25.3) MUTATED"   "DEL PEAK  8(6P25.3) MUTATED" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
"DEL PEAK  8(6P25.3) WILD-TYPE"   "DEL PEAK  8(6P25.3) MUTATED" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
  "DEL PEAK  8(6P25.3) MUTATED" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-H4-A2HQ 
"DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"DEL PEAK  8(6P25.3) WILD-TYPE"   "DEL PEAK  8(6P25.3) MUTATED" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
"DEL PEAK  8(6P25.3) WILD-TYPE"   "DEL PEAK  8(6P25.3) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
  "DEL PEAK  8(6P25.3) MUTATED" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
"DEL PEAK  8(6P25.3) WILD-TYPE"   "DEL PEAK  8(6P25.3) MUTATED" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
  "DEL PEAK  8(6P25.3) MUTATED"   "DEL PEAK  8(6P25.3) MUTATED" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
"DEL PEAK  8(6P25.3) WILD-TYPE"   "DEL PEAK  8(6P25.3) MUTATED" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
  "DEL PEAK  8(6P25.3) MUTATED" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
"DEL PEAK  8(6P25.3) WILD-TYPE" "DEL PEAK  8(6P25.3) WILD-TYPE" 
                   TCGA-H4-A2HQ 
"DEL PEAK  8(6P25.3) WILD-TYPE" 
[1] "hr=" "2"  
D28V2, continuous
D28V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(6P25.3) MUTATED      4    4
  DEL PEAK  8(6P25.3) WILD-TYPE   27   18
        clus
vv       DEL PEAK  8(6P25.3) MUTATED DEL PEAK  8(6P25.3) WILD-TYPE
  FEMALE                           4                            18
  MALE                             4                            27
D28V4, continuous

Clustering(29) Variable = Del Peak  9(6q21) mutation analysis
D29V1, survival
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BT-A0S7 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BT-A0YX                  TCGA-BT-A20J 
"DEL PEAK  9(6Q21) WILD-TYPE"   "DEL PEAK  9(6Q21) MUTATED" 
                 TCGA-BT-A20N                  TCGA-BT-A20O 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BT-A20P                  TCGA-BT-A20Q 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BT-A20R                  TCGA-BT-A20T 
"DEL PEAK  9(6Q21) WILD-TYPE"   "DEL PEAK  9(6Q21) MUTATED" 
                 TCGA-BT-A20U                  TCGA-BT-A20V 
"DEL PEAK  9(6Q21) WILD-TYPE"   "DEL PEAK  9(6Q21) MUTATED" 
                 TCGA-BT-A20W                  TCGA-BT-A20X 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-C4-A0EZ                  TCGA-C4-A0F0 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-C4-A0F6                  TCGA-CF-A1HR 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CF-A1HS                  TCGA-CF-A27C 
"DEL PEAK  9(6Q21) WILD-TYPE"   "DEL PEAK  9(6Q21) MUTATED" 
                 TCGA-CU-A0YN                  TCGA-CU-A0YO 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CU-A0YR                  TCGA-DK-A1A3 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-DK-A1A5                  TCGA-DK-A1A6 
"DEL PEAK  9(6Q21) WILD-TYPE"   "DEL PEAK  9(6Q21) MUTATED" 
                 TCGA-DK-A1A7                  TCGA-DK-A1AA 
  "DEL PEAK  9(6Q21) MUTATED" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-DK-A1AB                  TCGA-DK-A1AC 
  "DEL PEAK  9(6Q21) MUTATED" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-DK-A1AD                  TCGA-DK-A1AE 
"DEL PEAK  9(6Q21) WILD-TYPE"   "DEL PEAK  9(6Q21) MUTATED" 
                 TCGA-DK-A1AF                  TCGA-DK-A1AG 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-DK-A2HX                  TCGA-DK-A2I1 
"DEL PEAK  9(6Q21) WILD-TYPE"   "DEL PEAK  9(6Q21) MUTATED" 
                 TCGA-DK-A2I2                  TCGA-DK-A2I6 
"DEL PEAK  9(6Q21) WILD-TYPE"   "DEL PEAK  9(6Q21) MUTATED" 
                 TCGA-E5-A2PC                  TCGA-FD-A3B3 
  "DEL PEAK  9(6Q21) MUTATED" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FT-A3EE 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
"DEL PEAK  9(6Q21) WILD-TYPE"   "DEL PEAK  9(6Q21) MUTATED" 
                 TCGA-GD-A2C5                  TCGA-H4-A2HO 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-H4-A2HQ 
  "DEL PEAK  9(6Q21) MUTATED" 
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BT-A0S7 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BT-A0YX                  TCGA-BT-A20J 
"DEL PEAK  9(6Q21) WILD-TYPE"   "DEL PEAK  9(6Q21) MUTATED" 
                 TCGA-BT-A20N                  TCGA-BT-A20O 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BT-A20P                  TCGA-BT-A20Q 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BT-A20R                  TCGA-BT-A20T 
"DEL PEAK  9(6Q21) WILD-TYPE"   "DEL PEAK  9(6Q21) MUTATED" 
                 TCGA-BT-A20U                  TCGA-BT-A20V 
"DEL PEAK  9(6Q21) WILD-TYPE"   "DEL PEAK  9(6Q21) MUTATED" 
                 TCGA-BT-A20W                  TCGA-BT-A20X 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-C4-A0EZ                  TCGA-C4-A0F0 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-C4-A0F6                  TCGA-CF-A1HR 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CF-A1HS                  TCGA-CF-A27C 
"DEL PEAK  9(6Q21) WILD-TYPE"   "DEL PEAK  9(6Q21) MUTATED" 
                 TCGA-CU-A0YN                  TCGA-CU-A0YO 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CU-A0YR                  TCGA-DK-A1A3 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-DK-A1A5                  TCGA-DK-A1A6 
"DEL PEAK  9(6Q21) WILD-TYPE"   "DEL PEAK  9(6Q21) MUTATED" 
                 TCGA-DK-A1A7                  TCGA-DK-A1AA 
  "DEL PEAK  9(6Q21) MUTATED" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-DK-A1AB                  TCGA-DK-A1AC 
  "DEL PEAK  9(6Q21) MUTATED" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-DK-A1AD                  TCGA-DK-A1AE 
"DEL PEAK  9(6Q21) WILD-TYPE"   "DEL PEAK  9(6Q21) MUTATED" 
                 TCGA-DK-A1AF                  TCGA-DK-A1AG 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-DK-A2HX                  TCGA-DK-A2I1 
"DEL PEAK  9(6Q21) WILD-TYPE"   "DEL PEAK  9(6Q21) MUTATED" 
                 TCGA-DK-A2I2                  TCGA-DK-A2I6 
"DEL PEAK  9(6Q21) WILD-TYPE"   "DEL PEAK  9(6Q21) MUTATED" 
                 TCGA-E5-A2PC                  TCGA-FD-A3B3 
  "DEL PEAK  9(6Q21) MUTATED" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FT-A3EE 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
"DEL PEAK  9(6Q21) WILD-TYPE"   "DEL PEAK  9(6Q21) MUTATED" 
                 TCGA-GD-A2C5                  TCGA-H4-A2HO 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-H4-A2HQ 
  "DEL PEAK  9(6Q21) MUTATED" 
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BT-A0S7 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BT-A0YX                  TCGA-BT-A20J 
"DEL PEAK  9(6Q21) WILD-TYPE"   "DEL PEAK  9(6Q21) MUTATED" 
                 TCGA-BT-A20N                  TCGA-BT-A20O 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BT-A20P                  TCGA-BT-A20Q 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BT-A20R                  TCGA-BT-A20T 
"DEL PEAK  9(6Q21) WILD-TYPE"   "DEL PEAK  9(6Q21) MUTATED" 
                 TCGA-BT-A20U                  TCGA-BT-A20V 
"DEL PEAK  9(6Q21) WILD-TYPE"   "DEL PEAK  9(6Q21) MUTATED" 
                 TCGA-BT-A20W                  TCGA-BT-A20X 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-C4-A0EZ                  TCGA-C4-A0F0 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-C4-A0F6                  TCGA-CF-A1HR 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CF-A1HS                  TCGA-CF-A27C 
"DEL PEAK  9(6Q21) WILD-TYPE"   "DEL PEAK  9(6Q21) MUTATED" 
                 TCGA-CU-A0YN                  TCGA-CU-A0YO 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CU-A0YR                  TCGA-DK-A1A3 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-DK-A1A5                  TCGA-DK-A1A6 
"DEL PEAK  9(6Q21) WILD-TYPE"   "DEL PEAK  9(6Q21) MUTATED" 
                 TCGA-DK-A1A7                  TCGA-DK-A1AA 
  "DEL PEAK  9(6Q21) MUTATED" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-DK-A1AB                  TCGA-DK-A1AC 
  "DEL PEAK  9(6Q21) MUTATED" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-DK-A1AD                  TCGA-DK-A1AE 
"DEL PEAK  9(6Q21) WILD-TYPE"   "DEL PEAK  9(6Q21) MUTATED" 
                 TCGA-DK-A1AF                  TCGA-DK-A1AG 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-DK-A2HX                  TCGA-DK-A2I1 
"DEL PEAK  9(6Q21) WILD-TYPE"   "DEL PEAK  9(6Q21) MUTATED" 
                 TCGA-DK-A2I2                  TCGA-DK-A2I6 
"DEL PEAK  9(6Q21) WILD-TYPE"   "DEL PEAK  9(6Q21) MUTATED" 
                 TCGA-E5-A2PC                  TCGA-FD-A3B3 
  "DEL PEAK  9(6Q21) MUTATED" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FT-A3EE 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
"DEL PEAK  9(6Q21) WILD-TYPE"   "DEL PEAK  9(6Q21) MUTATED" 
                 TCGA-GD-A2C5                  TCGA-H4-A2HO 
"DEL PEAK  9(6Q21) WILD-TYPE" "DEL PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-H4-A2HQ 
  "DEL PEAK  9(6Q21) MUTATED" 
[1] "hr=" "2.7"
D29V2, continuous
D29V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  9(6Q21) MUTATED      7    6
  DEL PEAK  9(6Q21) WILD-TYPE   24   16
        clus
vv       DEL PEAK  9(6Q21) MUTATED DEL PEAK  9(6Q21) WILD-TYPE
  FEMALE                         6                          16
  MALE                           7                          24
D29V4, continuous

Clustering(30) Variable = Del Peak 10(6q25.2) mutation analysis
D30V1, survival
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"DEL PEAK 10(6Q25.2) WILD-TYPE"   "DEL PEAK 10(6Q25.2) MUTATED" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
"DEL PEAK 10(6Q25.2) WILD-TYPE"   "DEL PEAK 10(6Q25.2) MUTATED" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"DEL PEAK 10(6Q25.2) WILD-TYPE"   "DEL PEAK 10(6Q25.2) MUTATED" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"DEL PEAK 10(6Q25.2) WILD-TYPE"   "DEL PEAK 10(6Q25.2) MUTATED" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
"DEL PEAK 10(6Q25.2) WILD-TYPE"   "DEL PEAK 10(6Q25.2) MUTATED" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
"DEL PEAK 10(6Q25.2) WILD-TYPE"   "DEL PEAK 10(6Q25.2) MUTATED" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
  "DEL PEAK 10(6Q25.2) MUTATED" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
  "DEL PEAK 10(6Q25.2) MUTATED" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
"DEL PEAK 10(6Q25.2) WILD-TYPE"   "DEL PEAK 10(6Q25.2) MUTATED" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
"DEL PEAK 10(6Q25.2) WILD-TYPE"   "DEL PEAK 10(6Q25.2) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "DEL PEAK 10(6Q25.2) MUTATED" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK 10(6Q25.2) WILD-TYPE"   "DEL PEAK 10(6Q25.2) MUTATED" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "DEL PEAK 10(6Q25.2) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"DEL PEAK 10(6Q25.2) WILD-TYPE"   "DEL PEAK 10(6Q25.2) MUTATED" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
"DEL PEAK 10(6Q25.2) WILD-TYPE"   "DEL PEAK 10(6Q25.2) MUTATED" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"DEL PEAK 10(6Q25.2) WILD-TYPE"   "DEL PEAK 10(6Q25.2) MUTATED" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"DEL PEAK 10(6Q25.2) WILD-TYPE"   "DEL PEAK 10(6Q25.2) MUTATED" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
"DEL PEAK 10(6Q25.2) WILD-TYPE"   "DEL PEAK 10(6Q25.2) MUTATED" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
"DEL PEAK 10(6Q25.2) WILD-TYPE"   "DEL PEAK 10(6Q25.2) MUTATED" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
  "DEL PEAK 10(6Q25.2) MUTATED" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
  "DEL PEAK 10(6Q25.2) MUTATED" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
"DEL PEAK 10(6Q25.2) WILD-TYPE"   "DEL PEAK 10(6Q25.2) MUTATED" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
"DEL PEAK 10(6Q25.2) WILD-TYPE"   "DEL PEAK 10(6Q25.2) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "DEL PEAK 10(6Q25.2) MUTATED" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK 10(6Q25.2) WILD-TYPE"   "DEL PEAK 10(6Q25.2) MUTATED" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "DEL PEAK 10(6Q25.2) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
"DEL PEAK 10(6Q25.2) WILD-TYPE"   "DEL PEAK 10(6Q25.2) MUTATED" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
"DEL PEAK 10(6Q25.2) WILD-TYPE"   "DEL PEAK 10(6Q25.2) MUTATED" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
"DEL PEAK 10(6Q25.2) WILD-TYPE"   "DEL PEAK 10(6Q25.2) MUTATED" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"DEL PEAK 10(6Q25.2) WILD-TYPE"   "DEL PEAK 10(6Q25.2) MUTATED" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
"DEL PEAK 10(6Q25.2) WILD-TYPE"   "DEL PEAK 10(6Q25.2) MUTATED" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
"DEL PEAK 10(6Q25.2) WILD-TYPE"   "DEL PEAK 10(6Q25.2) MUTATED" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
  "DEL PEAK 10(6Q25.2) MUTATED" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
  "DEL PEAK 10(6Q25.2) MUTATED" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
"DEL PEAK 10(6Q25.2) WILD-TYPE"   "DEL PEAK 10(6Q25.2) MUTATED" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
"DEL PEAK 10(6Q25.2) WILD-TYPE"   "DEL PEAK 10(6Q25.2) MUTATED" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "DEL PEAK 10(6Q25.2) MUTATED" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK 10(6Q25.2) WILD-TYPE"   "DEL PEAK 10(6Q25.2) MUTATED" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "DEL PEAK 10(6Q25.2) MUTATED" 
[1] "hr=" "3.4"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(6Q25.2) MUTATED      8    5
  DEL PEAK 10(6Q25.2) WILD-TYPE   23   17
        clus
vv       DEL PEAK 10(6Q25.2) MUTATED DEL PEAK 10(6Q25.2) WILD-TYPE
  FEMALE                           5                            17
  MALE                             8                            23
D30V4, continuous
[1] "Remove cluster labels:"      "DEL PEAK 10(6Q25.2) MUTATED"
clus
  DEL PEAK 10(6Q25.2) MUTATED DEL PEAK 10(6Q25.2) WILD-TYPE 
                            2                             8 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-DK-A2HX                    TCGA-G2-A2EF 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-G2-A2EJ                    TCGA-G2-A2EK 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 
                   TCGA-G2-A2EL                    TCGA-G2-A2EO 
"DEL PEAK 10(6Q25.2) WILD-TYPE" "DEL PEAK 10(6Q25.2) WILD-TYPE" 

Clustering(31) Variable = Del Peak 11(9p23) mutation analysis
D31V1, survival
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
  "DEL PEAK 11(9P23) MUTATED" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BT-A0S7 
"DEL PEAK 11(9P23) WILD-TYPE" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-BT-A0YX                  TCGA-BT-A20J 
  "DEL PEAK 11(9P23) MUTATED" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-BT-A20N                  TCGA-BT-A20O 
  "DEL PEAK 11(9P23) MUTATED" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-BT-A20P                  TCGA-BT-A20Q 
"DEL PEAK 11(9P23) WILD-TYPE"   "DEL PEAK 11(9P23) MUTATED" 
                 TCGA-BT-A20R                  TCGA-BT-A20T 
"DEL PEAK 11(9P23) WILD-TYPE"   "DEL PEAK 11(9P23) MUTATED" 
                 TCGA-BT-A20U                  TCGA-BT-A20V 
"DEL PEAK 11(9P23) WILD-TYPE" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-BT-A20W                  TCGA-BT-A20X 
  "DEL PEAK 11(9P23) MUTATED" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-C4-A0EZ                  TCGA-C4-A0F0 
"DEL PEAK 11(9P23) WILD-TYPE"   "DEL PEAK 11(9P23) MUTATED" 
                 TCGA-C4-A0F6                  TCGA-CF-A1HR 
"DEL PEAK 11(9P23) WILD-TYPE" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-CF-A1HS                  TCGA-CF-A27C 
"DEL PEAK 11(9P23) WILD-TYPE"   "DEL PEAK 11(9P23) MUTATED" 
                 TCGA-CU-A0YN                  TCGA-CU-A0YO 
"DEL PEAK 11(9P23) WILD-TYPE" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-CU-A0YR                  TCGA-DK-A1A3 
"DEL PEAK 11(9P23) WILD-TYPE"   "DEL PEAK 11(9P23) MUTATED" 
                 TCGA-DK-A1A5                  TCGA-DK-A1A6 
"DEL PEAK 11(9P23) WILD-TYPE" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-DK-A1A7                  TCGA-DK-A1AA 
"DEL PEAK 11(9P23) WILD-TYPE"   "DEL PEAK 11(9P23) MUTATED" 
                 TCGA-DK-A1AB                  TCGA-DK-A1AC 
  "DEL PEAK 11(9P23) MUTATED" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-DK-A1AD                  TCGA-DK-A1AE 
"DEL PEAK 11(9P23) WILD-TYPE" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-DK-A1AF                  TCGA-DK-A1AG 
"DEL PEAK 11(9P23) WILD-TYPE"   "DEL PEAK 11(9P23) MUTATED" 
                 TCGA-DK-A2HX                  TCGA-DK-A2I1 
"DEL PEAK 11(9P23) WILD-TYPE"   "DEL PEAK 11(9P23) MUTATED" 
                 TCGA-DK-A2I2                  TCGA-DK-A2I6 
"DEL PEAK 11(9P23) WILD-TYPE" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-E5-A2PC                  TCGA-FD-A3B3 
  "DEL PEAK 11(9P23) MUTATED" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FT-A3EE 
  "DEL PEAK 11(9P23) MUTATED" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
"DEL PEAK 11(9P23) WILD-TYPE"   "DEL PEAK 11(9P23) MUTATED" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
"DEL PEAK 11(9P23) WILD-TYPE" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
  "DEL PEAK 11(9P23) MUTATED" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-GD-A2C5                  TCGA-H4-A2HO 
"DEL PEAK 11(9P23) WILD-TYPE" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-H4-A2HQ 
"DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
  "DEL PEAK 11(9P23) MUTATED" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BT-A0S7 
"DEL PEAK 11(9P23) WILD-TYPE" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-BT-A0YX                  TCGA-BT-A20J 
  "DEL PEAK 11(9P23) MUTATED" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-BT-A20N                  TCGA-BT-A20O 
  "DEL PEAK 11(9P23) MUTATED" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-BT-A20P                  TCGA-BT-A20Q 
"DEL PEAK 11(9P23) WILD-TYPE"   "DEL PEAK 11(9P23) MUTATED" 
                 TCGA-BT-A20R                  TCGA-BT-A20T 
"DEL PEAK 11(9P23) WILD-TYPE"   "DEL PEAK 11(9P23) MUTATED" 
                 TCGA-BT-A20U                  TCGA-BT-A20V 
"DEL PEAK 11(9P23) WILD-TYPE" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-BT-A20W                  TCGA-BT-A20X 
  "DEL PEAK 11(9P23) MUTATED" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-C4-A0EZ                  TCGA-C4-A0F0 
"DEL PEAK 11(9P23) WILD-TYPE"   "DEL PEAK 11(9P23) MUTATED" 
                 TCGA-C4-A0F6                  TCGA-CF-A1HR 
"DEL PEAK 11(9P23) WILD-TYPE" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-CF-A1HS                  TCGA-CF-A27C 
"DEL PEAK 11(9P23) WILD-TYPE"   "DEL PEAK 11(9P23) MUTATED" 
                 TCGA-CU-A0YN                  TCGA-CU-A0YO 
"DEL PEAK 11(9P23) WILD-TYPE" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-CU-A0YR                  TCGA-DK-A1A3 
"DEL PEAK 11(9P23) WILD-TYPE"   "DEL PEAK 11(9P23) MUTATED" 
                 TCGA-DK-A1A5                  TCGA-DK-A1A6 
"DEL PEAK 11(9P23) WILD-TYPE" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-DK-A1A7                  TCGA-DK-A1AA 
"DEL PEAK 11(9P23) WILD-TYPE"   "DEL PEAK 11(9P23) MUTATED" 
                 TCGA-DK-A1AB                  TCGA-DK-A1AC 
  "DEL PEAK 11(9P23) MUTATED" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-DK-A1AD                  TCGA-DK-A1AE 
"DEL PEAK 11(9P23) WILD-TYPE" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-DK-A1AF                  TCGA-DK-A1AG 
"DEL PEAK 11(9P23) WILD-TYPE"   "DEL PEAK 11(9P23) MUTATED" 
                 TCGA-DK-A2HX                  TCGA-DK-A2I1 
"DEL PEAK 11(9P23) WILD-TYPE"   "DEL PEAK 11(9P23) MUTATED" 
                 TCGA-DK-A2I2                  TCGA-DK-A2I6 
"DEL PEAK 11(9P23) WILD-TYPE" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-E5-A2PC                  TCGA-FD-A3B3 
  "DEL PEAK 11(9P23) MUTATED" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FT-A3EE 
  "DEL PEAK 11(9P23) MUTATED" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
"DEL PEAK 11(9P23) WILD-TYPE"   "DEL PEAK 11(9P23) MUTATED" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
"DEL PEAK 11(9P23) WILD-TYPE" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
  "DEL PEAK 11(9P23) MUTATED" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-GD-A2C5                  TCGA-H4-A2HO 
"DEL PEAK 11(9P23) WILD-TYPE" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-H4-A2HQ 
"DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
  "DEL PEAK 11(9P23) MUTATED" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BT-A0S7 
"DEL PEAK 11(9P23) WILD-TYPE" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-BT-A0YX                  TCGA-BT-A20J 
  "DEL PEAK 11(9P23) MUTATED" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-BT-A20N                  TCGA-BT-A20O 
  "DEL PEAK 11(9P23) MUTATED" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-BT-A20P                  TCGA-BT-A20Q 
"DEL PEAK 11(9P23) WILD-TYPE"   "DEL PEAK 11(9P23) MUTATED" 
                 TCGA-BT-A20R                  TCGA-BT-A20T 
"DEL PEAK 11(9P23) WILD-TYPE"   "DEL PEAK 11(9P23) MUTATED" 
                 TCGA-BT-A20U                  TCGA-BT-A20V 
"DEL PEAK 11(9P23) WILD-TYPE" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-BT-A20W                  TCGA-BT-A20X 
  "DEL PEAK 11(9P23) MUTATED" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-C4-A0EZ                  TCGA-C4-A0F0 
"DEL PEAK 11(9P23) WILD-TYPE"   "DEL PEAK 11(9P23) MUTATED" 
                 TCGA-C4-A0F6                  TCGA-CF-A1HR 
"DEL PEAK 11(9P23) WILD-TYPE" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-CF-A1HS                  TCGA-CF-A27C 
"DEL PEAK 11(9P23) WILD-TYPE"   "DEL PEAK 11(9P23) MUTATED" 
                 TCGA-CU-A0YN                  TCGA-CU-A0YO 
"DEL PEAK 11(9P23) WILD-TYPE" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-CU-A0YR                  TCGA-DK-A1A3 
"DEL PEAK 11(9P23) WILD-TYPE"   "DEL PEAK 11(9P23) MUTATED" 
                 TCGA-DK-A1A5                  TCGA-DK-A1A6 
"DEL PEAK 11(9P23) WILD-TYPE" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-DK-A1A7                  TCGA-DK-A1AA 
"DEL PEAK 11(9P23) WILD-TYPE"   "DEL PEAK 11(9P23) MUTATED" 
                 TCGA-DK-A1AB                  TCGA-DK-A1AC 
  "DEL PEAK 11(9P23) MUTATED" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-DK-A1AD                  TCGA-DK-A1AE 
"DEL PEAK 11(9P23) WILD-TYPE" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-DK-A1AF                  TCGA-DK-A1AG 
"DEL PEAK 11(9P23) WILD-TYPE"   "DEL PEAK 11(9P23) MUTATED" 
                 TCGA-DK-A2HX                  TCGA-DK-A2I1 
"DEL PEAK 11(9P23) WILD-TYPE"   "DEL PEAK 11(9P23) MUTATED" 
                 TCGA-DK-A2I2                  TCGA-DK-A2I6 
"DEL PEAK 11(9P23) WILD-TYPE" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-E5-A2PC                  TCGA-FD-A3B3 
  "DEL PEAK 11(9P23) MUTATED" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FT-A3EE 
  "DEL PEAK 11(9P23) MUTATED" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
"DEL PEAK 11(9P23) WILD-TYPE"   "DEL PEAK 11(9P23) MUTATED" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
"DEL PEAK 11(9P23) WILD-TYPE" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
  "DEL PEAK 11(9P23) MUTATED" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-GD-A2C5                  TCGA-H4-A2HO 
"DEL PEAK 11(9P23) WILD-TYPE" "DEL PEAK 11(9P23) WILD-TYPE" 
                 TCGA-H4-A2HQ 
"DEL PEAK 11(9P23) WILD-TYPE" 
[1] "hr=" "2.4"
D31V2, continuous
D31V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 11(9P23) MUTATED     11    6
  DEL PEAK 11(9P23) WILD-TYPE   20   16
        clus
vv       DEL PEAK 11(9P23) MUTATED DEL PEAK 11(9P23) WILD-TYPE
  FEMALE                         6                          16
  MALE                          11                          20
D31V4, continuous

Clustering(32) Variable = Del Peak 12(9p21.3) mutation analysis
D32V1, survival
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-BL-A13J                    TCGA-BT-A0S7 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-BT-A0YX                    TCGA-BT-A20J 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-BT-A20N                    TCGA-BT-A20O 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-BT-A20P                    TCGA-BT-A20Q 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-BT-A20R                    TCGA-BT-A20T 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-BT-A20U                    TCGA-BT-A20V 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-BT-A20W                    TCGA-BT-A20X 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-DK-A1A3 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-DK-A1A5                    TCGA-DK-A1A6 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-DK-A1A7                    TCGA-DK-A1AA 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-DK-A1AB                    TCGA-DK-A1AC 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-DK-A1AD                    TCGA-DK-A1AE 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-DK-A1AF                    TCGA-DK-A1AG 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-DK-A2HX                    TCGA-DK-A2I1 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-DK-A2I2                    TCGA-DK-A2I6 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-E5-A2PC                    TCGA-FD-A3B3 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FT-A3EE 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-GD-A2C5                    TCGA-H4-A2HO 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-H4-A2HQ 
  "DEL PEAK 12(9P21.3) MUTATED" 
[1] "hr=" "1.9"
D32V2, continuous
D32V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(9P21.3) MUTATED     19   10
  DEL PEAK 12(9P21.3) WILD-TYPE   12   12
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  FEMALE                          10                            12
  MALE                            19                            12
D32V4, continuous

Clustering(33) Variable = Del Peak 13(9q22.33) mutation analysis
D33V1, survival
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
  "DEL PEAK 13(9Q22.33) MUTATED"   "DEL PEAK 13(9Q22.33) MUTATED" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
"DEL PEAK 13(9Q22.33) WILD-TYPE"   "DEL PEAK 13(9Q22.33) MUTATED" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "DEL PEAK 13(9Q22.33) MUTATED"   "DEL PEAK 13(9Q22.33) MUTATED" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"DEL PEAK 13(9Q22.33) WILD-TYPE"   "DEL PEAK 13(9Q22.33) MUTATED" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
  "DEL PEAK 13(9Q22.33) MUTATED"   "DEL PEAK 13(9Q22.33) MUTATED" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
"DEL PEAK 13(9Q22.33) WILD-TYPE"   "DEL PEAK 13(9Q22.33) MUTATED" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"DEL PEAK 13(9Q22.33) WILD-TYPE"   "DEL PEAK 13(9Q22.33) MUTATED" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
  "DEL PEAK 13(9Q22.33) MUTATED"   "DEL PEAK 13(9Q22.33) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-H4-A2HQ 
"DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
  "DEL PEAK 13(9Q22.33) MUTATED"   "DEL PEAK 13(9Q22.33) MUTATED" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
"DEL PEAK 13(9Q22.33) WILD-TYPE"   "DEL PEAK 13(9Q22.33) MUTATED" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "DEL PEAK 13(9Q22.33) MUTATED"   "DEL PEAK 13(9Q22.33) MUTATED" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"DEL PEAK 13(9Q22.33) WILD-TYPE"   "DEL PEAK 13(9Q22.33) MUTATED" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
  "DEL PEAK 13(9Q22.33) MUTATED"   "DEL PEAK 13(9Q22.33) MUTATED" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
"DEL PEAK 13(9Q22.33) WILD-TYPE"   "DEL PEAK 13(9Q22.33) MUTATED" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"DEL PEAK 13(9Q22.33) WILD-TYPE"   "DEL PEAK 13(9Q22.33) MUTATED" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
  "DEL PEAK 13(9Q22.33) MUTATED"   "DEL PEAK 13(9Q22.33) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-H4-A2HQ 
"DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
  "DEL PEAK 13(9Q22.33) MUTATED"   "DEL PEAK 13(9Q22.33) MUTATED" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
"DEL PEAK 13(9Q22.33) WILD-TYPE"   "DEL PEAK 13(9Q22.33) MUTATED" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "DEL PEAK 13(9Q22.33) MUTATED"   "DEL PEAK 13(9Q22.33) MUTATED" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"DEL PEAK 13(9Q22.33) WILD-TYPE"   "DEL PEAK 13(9Q22.33) MUTATED" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
  "DEL PEAK 13(9Q22.33) MUTATED"   "DEL PEAK 13(9Q22.33) MUTATED" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
"DEL PEAK 13(9Q22.33) WILD-TYPE"   "DEL PEAK 13(9Q22.33) MUTATED" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"DEL PEAK 13(9Q22.33) WILD-TYPE"   "DEL PEAK 13(9Q22.33) MUTATED" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
  "DEL PEAK 13(9Q22.33) MUTATED"   "DEL PEAK 13(9Q22.33) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-H4-A2HQ 
"DEL PEAK 13(9Q22.33) WILD-TYPE" 
[1] "hr=" "1.8"
D33V2, continuous
D33V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 13(9Q22.33) MUTATED     13    4
  DEL PEAK 13(9Q22.33) WILD-TYPE   18   18
        clus
vv       DEL PEAK 13(9Q22.33) MUTATED DEL PEAK 13(9Q22.33) WILD-TYPE
  FEMALE                            4                             18
  MALE                             13                             18
D33V4, continuous

Clustering(34) Variable = Del Peak 14(10q25.2) mutation analysis
D34V1, survival
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"DEL PEAK 14(10Q25.2) WILD-TYPE"   "DEL PEAK 14(10Q25.2) MUTATED" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"DEL PEAK 14(10Q25.2) WILD-TYPE"   "DEL PEAK 14(10Q25.2) MUTATED" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "DEL PEAK 14(10Q25.2) MUTATED" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
  "DEL PEAK 14(10Q25.2) MUTATED" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
  "DEL PEAK 14(10Q25.2) MUTATED" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
  "DEL PEAK 14(10Q25.2) MUTATED" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "DEL PEAK 14(10Q25.2) MUTATED" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
  "DEL PEAK 14(10Q25.2) MUTATED" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "DEL PEAK 14(10Q25.2) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"DEL PEAK 14(10Q25.2) WILD-TYPE"   "DEL PEAK 14(10Q25.2) MUTATED" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"DEL PEAK 14(10Q25.2) WILD-TYPE"   "DEL PEAK 14(10Q25.2) MUTATED" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "DEL PEAK 14(10Q25.2) MUTATED" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
  "DEL PEAK 14(10Q25.2) MUTATED" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
  "DEL PEAK 14(10Q25.2) MUTATED" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
  "DEL PEAK 14(10Q25.2) MUTATED" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "DEL PEAK 14(10Q25.2) MUTATED" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
  "DEL PEAK 14(10Q25.2) MUTATED" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "DEL PEAK 14(10Q25.2) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"DEL PEAK 14(10Q25.2) WILD-TYPE"   "DEL PEAK 14(10Q25.2) MUTATED" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"DEL PEAK 14(10Q25.2) WILD-TYPE"   "DEL PEAK 14(10Q25.2) MUTATED" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "DEL PEAK 14(10Q25.2) MUTATED" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
  "DEL PEAK 14(10Q25.2) MUTATED" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
  "DEL PEAK 14(10Q25.2) MUTATED" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
  "DEL PEAK 14(10Q25.2) MUTATED" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "DEL PEAK 14(10Q25.2) MUTATED" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
  "DEL PEAK 14(10Q25.2) MUTATED" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "DEL PEAK 14(10Q25.2) MUTATED" 
[1] "hr=" "1.9"
D34V2, continuous
D34V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 14(10Q25.2) MUTATED      5    4
  DEL PEAK 14(10Q25.2) WILD-TYPE   26   18
        clus
vv       DEL PEAK 14(10Q25.2) MUTATED DEL PEAK 14(10Q25.2) WILD-TYPE
  FEMALE                            4                             18
  MALE                              5                             26
D34V4, continuous
[1] "Remove cluster labels:"       "DEL PEAK 14(10Q25.2) MUTATED"
clus
  DEL PEAK 14(10Q25.2) MUTATED DEL PEAK 14(10Q25.2) WILD-TYPE 
                             2                              8 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-G2-A2EF 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-G2-A2EJ                     TCGA-G2-A2EL 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 14(10Q25.2) WILD-TYPE" "DEL PEAK 14(10Q25.2) WILD-TYPE" 

Clustering(35) Variable = Del Peak 15(12p13.2) mutation analysis
D35V1, survival
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"DEL PEAK 15(12P13.2) WILD-TYPE"   "DEL PEAK 15(12P13.2) MUTATED" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
"DEL PEAK 15(12P13.2) WILD-TYPE"   "DEL PEAK 15(12P13.2) MUTATED" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
  "DEL PEAK 15(12P13.2) MUTATED" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-H4-A2HQ 
"DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"DEL PEAK 15(12P13.2) WILD-TYPE"   "DEL PEAK 15(12P13.2) MUTATED" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
"DEL PEAK 15(12P13.2) WILD-TYPE"   "DEL PEAK 15(12P13.2) MUTATED" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
  "DEL PEAK 15(12P13.2) MUTATED" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-H4-A2HQ 
"DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"DEL PEAK 15(12P13.2) WILD-TYPE"   "DEL PEAK 15(12P13.2) MUTATED" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
"DEL PEAK 15(12P13.2) WILD-TYPE"   "DEL PEAK 15(12P13.2) MUTATED" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
  "DEL PEAK 15(12P13.2) MUTATED" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-H4-A2HQ 
"DEL PEAK 15(12P13.2) WILD-TYPE" 
[1] "hr="     "7.4e+07"
D35V2, continuous
D35V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(12P13.2) MUTATED      2    1
  DEL PEAK 15(12P13.2) WILD-TYPE   29   21
        clus
vv       DEL PEAK 15(12P13.2) MUTATED DEL PEAK 15(12P13.2) WILD-TYPE
  FEMALE                            1                             21
  MALE                              2                             29
D35V4, continuous
[1] "Remove cluster labels:"       "DEL PEAK 15(12P13.2) MUTATED"
clus
  DEL PEAK 15(12P13.2) MUTATED DEL PEAK 15(12P13.2) WILD-TYPE 
                             1                              9 
                    TCGA-CF-A1HS                     TCGA-DK-A2HX 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-G2-A2EF 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-G2-A2EJ                     TCGA-G2-A2EK 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-G2-A2EL                     TCGA-G2-A2EO 
"DEL PEAK 15(12P13.2) WILD-TYPE" "DEL PEAK 15(12P13.2) WILD-TYPE" 
                    TCGA-G2-A2ES 
"DEL PEAK 15(12P13.2) WILD-TYPE" 

Clustering(36) Variable = Del Peak 16(13q14.11) mutation analysis
D36V1, survival
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BT-A0S7 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-BT-A0YX                      TCGA-BT-A20J 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-BT-A20N                      TCGA-BT-A20O 
  "DEL PEAK 16(13Q14.11) MUTATED" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-BT-A20P                      TCGA-BT-A20Q 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-BT-A20R                      TCGA-BT-A20T 
  "DEL PEAK 16(13Q14.11) MUTATED"   "DEL PEAK 16(13Q14.11) MUTATED" 
                     TCGA-BT-A20U                      TCGA-BT-A20V 
"DEL PEAK 16(13Q14.11) WILD-TYPE"   "DEL PEAK 16(13Q14.11) MUTATED" 
                     TCGA-BT-A20W                      TCGA-BT-A20X 
"DEL PEAK 16(13Q14.11) WILD-TYPE"   "DEL PEAK 16(13Q14.11) MUTATED" 
                     TCGA-C4-A0EZ                      TCGA-C4-A0F0 
  "DEL PEAK 16(13Q14.11) MUTATED"   "DEL PEAK 16(13Q14.11) MUTATED" 
                     TCGA-C4-A0F6                      TCGA-CF-A1HR 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-CF-A1HS                      TCGA-CF-A27C 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-CU-A0YN                      TCGA-CU-A0YO 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-CU-A0YR                      TCGA-DK-A1A3 
"DEL PEAK 16(13Q14.11) WILD-TYPE"   "DEL PEAK 16(13Q14.11) MUTATED" 
                     TCGA-DK-A1A5                      TCGA-DK-A1A6 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-DK-A1A7                      TCGA-DK-A1AA 
  "DEL PEAK 16(13Q14.11) MUTATED" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-DK-A1AB                      TCGA-DK-A1AC 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-DK-A1AD                      TCGA-DK-A1AE 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-DK-A1AF                      TCGA-DK-A1AG 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-DK-A2HX                      TCGA-DK-A2I1 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-DK-A2I2                      TCGA-DK-A2I6 
"DEL PEAK 16(13Q14.11) WILD-TYPE"   "DEL PEAK 16(13Q14.11) MUTATED" 
                     TCGA-E5-A2PC                      TCGA-FD-A3B3 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-FD-A3B4                      TCGA-FT-A3EE 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
"DEL PEAK 16(13Q14.11) WILD-TYPE"   "DEL PEAK 16(13Q14.11) MUTATED" 
                     TCGA-GD-A2C5                      TCGA-H4-A2HO 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-H4-A2HQ 
"DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BT-A0S7 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-BT-A0YX                      TCGA-BT-A20J 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-BT-A20N                      TCGA-BT-A20O 
  "DEL PEAK 16(13Q14.11) MUTATED" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-BT-A20P                      TCGA-BT-A20Q 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-BT-A20R                      TCGA-BT-A20T 
  "DEL PEAK 16(13Q14.11) MUTATED"   "DEL PEAK 16(13Q14.11) MUTATED" 
                     TCGA-BT-A20U                      TCGA-BT-A20V 
"DEL PEAK 16(13Q14.11) WILD-TYPE"   "DEL PEAK 16(13Q14.11) MUTATED" 
                     TCGA-BT-A20W                      TCGA-BT-A20X 
"DEL PEAK 16(13Q14.11) WILD-TYPE"   "DEL PEAK 16(13Q14.11) MUTATED" 
                     TCGA-C4-A0EZ                      TCGA-C4-A0F0 
  "DEL PEAK 16(13Q14.11) MUTATED"   "DEL PEAK 16(13Q14.11) MUTATED" 
                     TCGA-C4-A0F6                      TCGA-CF-A1HR 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-CF-A1HS                      TCGA-CF-A27C 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-CU-A0YN                      TCGA-CU-A0YO 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-CU-A0YR                      TCGA-DK-A1A3 
"DEL PEAK 16(13Q14.11) WILD-TYPE"   "DEL PEAK 16(13Q14.11) MUTATED" 
                     TCGA-DK-A1A5                      TCGA-DK-A1A6 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-DK-A1A7                      TCGA-DK-A1AA 
  "DEL PEAK 16(13Q14.11) MUTATED" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-DK-A1AB                      TCGA-DK-A1AC 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-DK-A1AD                      TCGA-DK-A1AE 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-DK-A1AF                      TCGA-DK-A1AG 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-DK-A2HX                      TCGA-DK-A2I1 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-DK-A2I2                      TCGA-DK-A2I6 
"DEL PEAK 16(13Q14.11) WILD-TYPE"   "DEL PEAK 16(13Q14.11) MUTATED" 
                     TCGA-E5-A2PC                      TCGA-FD-A3B3 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-FD-A3B4                      TCGA-FT-A3EE 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
"DEL PEAK 16(13Q14.11) WILD-TYPE"   "DEL PEAK 16(13Q14.11) MUTATED" 
                     TCGA-GD-A2C5                      TCGA-H4-A2HO 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-H4-A2HQ 
"DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BT-A0S7 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-BT-A0YX                      TCGA-BT-A20J 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-BT-A20N                      TCGA-BT-A20O 
  "DEL PEAK 16(13Q14.11) MUTATED" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-BT-A20P                      TCGA-BT-A20Q 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-BT-A20R                      TCGA-BT-A20T 
  "DEL PEAK 16(13Q14.11) MUTATED"   "DEL PEAK 16(13Q14.11) MUTATED" 
                     TCGA-BT-A20U                      TCGA-BT-A20V 
"DEL PEAK 16(13Q14.11) WILD-TYPE"   "DEL PEAK 16(13Q14.11) MUTATED" 
                     TCGA-BT-A20W                      TCGA-BT-A20X 
"DEL PEAK 16(13Q14.11) WILD-TYPE"   "DEL PEAK 16(13Q14.11) MUTATED" 
                     TCGA-C4-A0EZ                      TCGA-C4-A0F0 
  "DEL PEAK 16(13Q14.11) MUTATED"   "DEL PEAK 16(13Q14.11) MUTATED" 
                     TCGA-C4-A0F6                      TCGA-CF-A1HR 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-CF-A1HS                      TCGA-CF-A27C 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-CU-A0YN                      TCGA-CU-A0YO 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-CU-A0YR                      TCGA-DK-A1A3 
"DEL PEAK 16(13Q14.11) WILD-TYPE"   "DEL PEAK 16(13Q14.11) MUTATED" 
                     TCGA-DK-A1A5                      TCGA-DK-A1A6 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-DK-A1A7                      TCGA-DK-A1AA 
  "DEL PEAK 16(13Q14.11) MUTATED" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-DK-A1AB                      TCGA-DK-A1AC 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-DK-A1AD                      TCGA-DK-A1AE 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-DK-A1AF                      TCGA-DK-A1AG 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-DK-A2HX                      TCGA-DK-A2I1 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-DK-A2I2                      TCGA-DK-A2I6 
"DEL PEAK 16(13Q14.11) WILD-TYPE"   "DEL PEAK 16(13Q14.11) MUTATED" 
                     TCGA-E5-A2PC                      TCGA-FD-A3B3 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-FD-A3B4                      TCGA-FT-A3EE 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
"DEL PEAK 16(13Q14.11) WILD-TYPE"   "DEL PEAK 16(13Q14.11) MUTATED" 
                     TCGA-GD-A2C5                      TCGA-H4-A2HO 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-H4-A2HQ 
"DEL PEAK 16(13Q14.11) WILD-TYPE" 
[1] "hr=" "1.6"
D36V2, continuous
D36V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 16(13Q14.11) MUTATED      7    4
  DEL PEAK 16(13Q14.11) WILD-TYPE   24   18
        clus
vv       DEL PEAK 16(13Q14.11) MUTATED DEL PEAK 16(13Q14.11) WILD-TYPE
  FEMALE                             4                              18
  MALE                               7                              24
D36V4, continuous
[1] "Remove cluster labels:"        "DEL PEAK 16(13Q14.11) MUTATED"
clus
  DEL PEAK 16(13Q14.11) MUTATED DEL PEAK 16(13Q14.11) WILD-TYPE 
                              1                               9 
                     TCGA-CF-A1HS                      TCGA-CF-A27C 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-DK-A2HX                      TCGA-E5-A2PC 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
"DEL PEAK 16(13Q14.11) WILD-TYPE" "DEL PEAK 16(13Q14.11) WILD-TYPE" 
                     TCGA-G2-A2EO 
"DEL PEAK 16(13Q14.11) WILD-TYPE" 

Clustering(37) Variable = Del Peak 17(15q13.1) mutation analysis
D37V1, survival
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
  "DEL PEAK 17(15Q13.1) MUTATED" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
"DEL PEAK 17(15Q13.1) WILD-TYPE"   "DEL PEAK 17(15Q13.1) MUTATED" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "DEL PEAK 17(15Q13.1) MUTATED"   "DEL PEAK 17(15Q13.1) MUTATED" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
  "DEL PEAK 17(15Q13.1) MUTATED" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
"DEL PEAK 17(15Q13.1) WILD-TYPE"   "DEL PEAK 17(15Q13.1) MUTATED" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
  "DEL PEAK 17(15Q13.1) MUTATED" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
  "DEL PEAK 17(15Q13.1) MUTATED" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "DEL PEAK 17(15Q13.1) MUTATED" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK 17(15Q13.1) MUTATED" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 17(15Q13.1) WILD-TYPE"   "DEL PEAK 17(15Q13.1) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "DEL PEAK 17(15Q13.1) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
  "DEL PEAK 17(15Q13.1) MUTATED" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
"DEL PEAK 17(15Q13.1) WILD-TYPE"   "DEL PEAK 17(15Q13.1) MUTATED" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "DEL PEAK 17(15Q13.1) MUTATED"   "DEL PEAK 17(15Q13.1) MUTATED" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
  "DEL PEAK 17(15Q13.1) MUTATED" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
"DEL PEAK 17(15Q13.1) WILD-TYPE"   "DEL PEAK 17(15Q13.1) MUTATED" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
  "DEL PEAK 17(15Q13.1) MUTATED" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
  "DEL PEAK 17(15Q13.1) MUTATED" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "DEL PEAK 17(15Q13.1) MUTATED" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK 17(15Q13.1) MUTATED" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 17(15Q13.1) WILD-TYPE"   "DEL PEAK 17(15Q13.1) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "DEL PEAK 17(15Q13.1) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
  "DEL PEAK 17(15Q13.1) MUTATED" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
"DEL PEAK 17(15Q13.1) WILD-TYPE"   "DEL PEAK 17(15Q13.1) MUTATED" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "DEL PEAK 17(15Q13.1) MUTATED"   "DEL PEAK 17(15Q13.1) MUTATED" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
  "DEL PEAK 17(15Q13.1) MUTATED" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
"DEL PEAK 17(15Q13.1) WILD-TYPE"   "DEL PEAK 17(15Q13.1) MUTATED" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
  "DEL PEAK 17(15Q13.1) MUTATED" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
  "DEL PEAK 17(15Q13.1) MUTATED" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
  "DEL PEAK 17(15Q13.1) MUTATED" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK 17(15Q13.1) MUTATED" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 17(15Q13.1) WILD-TYPE"   "DEL PEAK 17(15Q13.1) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
"DEL PEAK 17(15Q13.1) WILD-TYPE" "DEL PEAK 17(15Q13.1) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "DEL PEAK 17(15Q13.1) MUTATED" 
[1] "hr=" "2.6"
D37V2, continuous
D37V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(15Q13.1) MUTATED      8    4
  DEL PEAK 17(15Q13.1) WILD-TYPE   23   18
        clus
vv       DEL PEAK 17(15Q13.1) MUTATED DEL PEAK 17(15Q13.1) WILD-TYPE
  FEMALE                            4                             18
  MALE                              8                             23
D37V4, continuous

Clustering(38) Variable = Del Peak 18(16p13.3) mutation analysis
D38V1, survival
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
  "DEL PEAK 18(16P13.3) MUTATED"   "DEL PEAK 18(16P13.3) MUTATED" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
  "DEL PEAK 18(16P13.3) MUTATED" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "DEL PEAK 18(16P13.3) MUTATED" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "DEL PEAK 18(16P13.3) MUTATED" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
  "DEL PEAK 18(16P13.3) MUTATED" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
"DEL PEAK 18(16P13.3) WILD-TYPE"   "DEL PEAK 18(16P13.3) MUTATED" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
  "DEL PEAK 18(16P13.3) MUTATED" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
  "DEL PEAK 18(16P13.3) MUTATED" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
"DEL PEAK 18(16P13.3) WILD-TYPE"   "DEL PEAK 18(16P13.3) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK 18(16P13.3) MUTATED" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 18(16P13.3) WILD-TYPE"   "DEL PEAK 18(16P13.3) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
  "DEL PEAK 18(16P13.3) MUTATED" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "DEL PEAK 18(16P13.3) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
  "DEL PEAK 18(16P13.3) MUTATED"   "DEL PEAK 18(16P13.3) MUTATED" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
  "DEL PEAK 18(16P13.3) MUTATED" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "DEL PEAK 18(16P13.3) MUTATED" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "DEL PEAK 18(16P13.3) MUTATED" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
  "DEL PEAK 18(16P13.3) MUTATED" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
"DEL PEAK 18(16P13.3) WILD-TYPE"   "DEL PEAK 18(16P13.3) MUTATED" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
  "DEL PEAK 18(16P13.3) MUTATED" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
  "DEL PEAK 18(16P13.3) MUTATED" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
"DEL PEAK 18(16P13.3) WILD-TYPE"   "DEL PEAK 18(16P13.3) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK 18(16P13.3) MUTATED" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 18(16P13.3) WILD-TYPE"   "DEL PEAK 18(16P13.3) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
  "DEL PEAK 18(16P13.3) MUTATED" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "DEL PEAK 18(16P13.3) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
  "DEL PEAK 18(16P13.3) MUTATED"   "DEL PEAK 18(16P13.3) MUTATED" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
  "DEL PEAK 18(16P13.3) MUTATED" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "DEL PEAK 18(16P13.3) MUTATED" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "DEL PEAK 18(16P13.3) MUTATED" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
  "DEL PEAK 18(16P13.3) MUTATED" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
"DEL PEAK 18(16P13.3) WILD-TYPE"   "DEL PEAK 18(16P13.3) MUTATED" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
  "DEL PEAK 18(16P13.3) MUTATED" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
  "DEL PEAK 18(16P13.3) MUTATED" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
"DEL PEAK 18(16P13.3) WILD-TYPE"   "DEL PEAK 18(16P13.3) MUTATED" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK 18(16P13.3) MUTATED" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 18(16P13.3) WILD-TYPE"   "DEL PEAK 18(16P13.3) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 18(16P13.3) WILD-TYPE" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
  "DEL PEAK 18(16P13.3) MUTATED" "DEL PEAK 18(16P13.3) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "DEL PEAK 18(16P13.3) MUTATED" 
[1] "hr=" "1.1"
D38V2, continuous
D38V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(16P13.3) MUTATED      7    7
  DEL PEAK 18(16P13.3) WILD-TYPE   24   15
        clus
vv       DEL PEAK 18(16P13.3) MUTATED DEL PEAK 18(16P13.3) WILD-TYPE
  FEMALE                            7                             15
  MALE                              7                             24
D38V4, continuous

Clustering(39) Variable = Del Peak 19(16q23.1) mutation analysis
D39V1, survival
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
  "DEL PEAK 19(16Q23.1) MUTATED" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
"DEL PEAK 19(16Q23.1) WILD-TYPE"   "DEL PEAK 19(16Q23.1) MUTATED" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
"DEL PEAK 19(16Q23.1) WILD-TYPE"   "DEL PEAK 19(16Q23.1) MUTATED" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
  "DEL PEAK 19(16Q23.1) MUTATED"   "DEL PEAK 19(16Q23.1) MUTATED" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
  "DEL PEAK 19(16Q23.1) MUTATED" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "DEL PEAK 19(16Q23.1) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
  "DEL PEAK 19(16Q23.1) MUTATED" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
"DEL PEAK 19(16Q23.1) WILD-TYPE"   "DEL PEAK 19(16Q23.1) MUTATED" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
"DEL PEAK 19(16Q23.1) WILD-TYPE"   "DEL PEAK 19(16Q23.1) MUTATED" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
  "DEL PEAK 19(16Q23.1) MUTATED"   "DEL PEAK 19(16Q23.1) MUTATED" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
  "DEL PEAK 19(16Q23.1) MUTATED" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "DEL PEAK 19(16Q23.1) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BT-A0S7 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A0YX                     TCGA-BT-A20J 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20N                     TCGA-BT-A20O 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20P                     TCGA-BT-A20Q 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20R                     TCGA-BT-A20T 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20U                     TCGA-BT-A20V 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20W                     TCGA-BT-A20X 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
  "DEL PEAK 19(16Q23.1) MUTATED" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-DK-A1A3 
"DEL PEAK 19(16Q23.1) WILD-TYPE"   "DEL PEAK 19(16Q23.1) MUTATED" 
                    TCGA-DK-A1A5                     TCGA-DK-A1A6 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1A7                     TCGA-DK-A1AA 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1AB                     TCGA-DK-A1AC 
"DEL PEAK 19(16Q23.1) WILD-TYPE"   "DEL PEAK 19(16Q23.1) MUTATED" 
                    TCGA-DK-A1AD                     TCGA-DK-A1AE 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1AF                     TCGA-DK-A1AG 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A2HX                     TCGA-DK-A2I1 
  "DEL PEAK 19(16Q23.1) MUTATED"   "DEL PEAK 19(16Q23.1) MUTATED" 
                    TCGA-DK-A2I2                     TCGA-DK-A2I6 
  "DEL PEAK 19(16Q23.1) MUTATED" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-FD-A3B3 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FT-A3EE 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-GD-A2C5                     TCGA-H4-A2HO 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-H4-A2HQ 
  "DEL PEAK 19(16Q23.1) MUTATED" 
[1] "hr=" "1.2"
D39V2, continuous
D39V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(16Q23.1) MUTATED      3    4
  DEL PEAK 19(16Q23.1) WILD-TYPE   28   18
        clus
vv       DEL PEAK 19(16Q23.1) MUTATED DEL PEAK 19(16Q23.1) WILD-TYPE
  FEMALE                            4                             18
  MALE                              3                             28
D39V4, continuous
[1] "Remove cluster labels:"       "DEL PEAK 19(16Q23.1) MUTATED"
clus
  DEL PEAK 19(16Q23.1) MUTATED DEL PEAK 19(16Q23.1) WILD-TYPE 
                             1                              9 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-E5-A2PC                     TCGA-G2-A2EF 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-G2-A2EJ                     TCGA-G2-A2EK 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-G2-A2EL                     TCGA-G2-A2EO 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-G2-A2ES 
"DEL PEAK 19(16Q23.1) WILD-TYPE" 

Clustering(40) Variable = Del Peak 20(17p12) mutation analysis
D40V1, survival
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BT-A0S7 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-BT-A0YX                   TCGA-BT-A20J 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-BT-A20N                   TCGA-BT-A20O 
  "DEL PEAK 20(17P12) MUTATED" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-BT-A20P                   TCGA-BT-A20Q 
  "DEL PEAK 20(17P12) MUTATED"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-BT-A20R                   TCGA-BT-A20T 
"DEL PEAK 20(17P12) WILD-TYPE"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-BT-A20U                   TCGA-BT-A20V 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-BT-A20W                   TCGA-BT-A20X 
"DEL PEAK 20(17P12) WILD-TYPE"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-C4-A0EZ                   TCGA-C4-A0F0 
"DEL PEAK 20(17P12) WILD-TYPE"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-C4-A0F6                   TCGA-CF-A1HR 
"DEL PEAK 20(17P12) WILD-TYPE"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-CF-A1HS                   TCGA-CF-A27C 
"DEL PEAK 20(17P12) WILD-TYPE"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-CU-A0YN                   TCGA-CU-A0YO 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-CU-A0YR                   TCGA-DK-A1A3 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-DK-A1A5                   TCGA-DK-A1A6 
  "DEL PEAK 20(17P12) MUTATED"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-DK-A1A7                   TCGA-DK-A1AA 
  "DEL PEAK 20(17P12) MUTATED" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-DK-A1AB                   TCGA-DK-A1AC 
  "DEL PEAK 20(17P12) MUTATED"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-DK-A1AD                   TCGA-DK-A1AE 
  "DEL PEAK 20(17P12) MUTATED" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-DK-A1AF                   TCGA-DK-A1AG 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-DK-A2HX                   TCGA-DK-A2I1 
"DEL PEAK 20(17P12) WILD-TYPE"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-DK-A2I2                   TCGA-DK-A2I6 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-E5-A2PC                   TCGA-FD-A3B3 
  "DEL PEAK 20(17P12) MUTATED" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-FD-A3B4                   TCGA-FT-A3EE 
  "DEL PEAK 20(17P12) MUTATED" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
  "DEL PEAK 20(17P12) MUTATED"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
"DEL PEAK 20(17P12) WILD-TYPE"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
  "DEL PEAK 20(17P12) MUTATED" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-GD-A2C5                   TCGA-H4-A2HO 
  "DEL PEAK 20(17P12) MUTATED" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-H4-A2HQ 
  "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BT-A0S7 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-BT-A0YX                   TCGA-BT-A20J 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-BT-A20N                   TCGA-BT-A20O 
  "DEL PEAK 20(17P12) MUTATED" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-BT-A20P                   TCGA-BT-A20Q 
  "DEL PEAK 20(17P12) MUTATED"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-BT-A20R                   TCGA-BT-A20T 
"DEL PEAK 20(17P12) WILD-TYPE"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-BT-A20U                   TCGA-BT-A20V 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-BT-A20W                   TCGA-BT-A20X 
"DEL PEAK 20(17P12) WILD-TYPE"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-C4-A0EZ                   TCGA-C4-A0F0 
"DEL PEAK 20(17P12) WILD-TYPE"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-C4-A0F6                   TCGA-CF-A1HR 
"DEL PEAK 20(17P12) WILD-TYPE"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-CF-A1HS                   TCGA-CF-A27C 
"DEL PEAK 20(17P12) WILD-TYPE"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-CU-A0YN                   TCGA-CU-A0YO 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-CU-A0YR                   TCGA-DK-A1A3 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-DK-A1A5                   TCGA-DK-A1A6 
  "DEL PEAK 20(17P12) MUTATED"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-DK-A1A7                   TCGA-DK-A1AA 
  "DEL PEAK 20(17P12) MUTATED" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-DK-A1AB                   TCGA-DK-A1AC 
  "DEL PEAK 20(17P12) MUTATED"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-DK-A1AD                   TCGA-DK-A1AE 
  "DEL PEAK 20(17P12) MUTATED" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-DK-A1AF                   TCGA-DK-A1AG 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-DK-A2HX                   TCGA-DK-A2I1 
"DEL PEAK 20(17P12) WILD-TYPE"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-DK-A2I2                   TCGA-DK-A2I6 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-E5-A2PC                   TCGA-FD-A3B3 
  "DEL PEAK 20(17P12) MUTATED" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-FD-A3B4                   TCGA-FT-A3EE 
  "DEL PEAK 20(17P12) MUTATED" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
  "DEL PEAK 20(17P12) MUTATED"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
"DEL PEAK 20(17P12) WILD-TYPE"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
  "DEL PEAK 20(17P12) MUTATED" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-GD-A2C5                   TCGA-H4-A2HO 
  "DEL PEAK 20(17P12) MUTATED" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-H4-A2HQ 
  "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BT-A0S7 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-BT-A0YX                   TCGA-BT-A20J 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-BT-A20N                   TCGA-BT-A20O 
  "DEL PEAK 20(17P12) MUTATED" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-BT-A20P                   TCGA-BT-A20Q 
  "DEL PEAK 20(17P12) MUTATED"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-BT-A20R                   TCGA-BT-A20T 
"DEL PEAK 20(17P12) WILD-TYPE"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-BT-A20U                   TCGA-BT-A20V 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-BT-A20W                   TCGA-BT-A20X 
"DEL PEAK 20(17P12) WILD-TYPE"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-C4-A0EZ                   TCGA-C4-A0F0 
"DEL PEAK 20(17P12) WILD-TYPE"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-C4-A0F6                   TCGA-CF-A1HR 
"DEL PEAK 20(17P12) WILD-TYPE"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-CF-A1HS                   TCGA-CF-A27C 
"DEL PEAK 20(17P12) WILD-TYPE"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-CU-A0YN                   TCGA-CU-A0YO 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-CU-A0YR                   TCGA-DK-A1A3 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-DK-A1A5                   TCGA-DK-A1A6 
  "DEL PEAK 20(17P12) MUTATED"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-DK-A1A7                   TCGA-DK-A1AA 
  "DEL PEAK 20(17P12) MUTATED" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-DK-A1AB                   TCGA-DK-A1AC 
  "DEL PEAK 20(17P12) MUTATED"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-DK-A1AD                   TCGA-DK-A1AE 
  "DEL PEAK 20(17P12) MUTATED" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-DK-A1AF                   TCGA-DK-A1AG 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-DK-A2HX                   TCGA-DK-A2I1 
"DEL PEAK 20(17P12) WILD-TYPE"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-DK-A2I2                   TCGA-DK-A2I6 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-E5-A2PC                   TCGA-FD-A3B3 
  "DEL PEAK 20(17P12) MUTATED" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-FD-A3B4                   TCGA-FT-A3EE 
  "DEL PEAK 20(17P12) MUTATED" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
  "DEL PEAK 20(17P12) MUTATED"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
"DEL PEAK 20(17P12) WILD-TYPE"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
  "DEL PEAK 20(17P12) MUTATED" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-GD-A2C5                   TCGA-H4-A2HO 
  "DEL PEAK 20(17P12) MUTATED" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-H4-A2HQ 
  "DEL PEAK 20(17P12) MUTATED" 
[1] "hr=" "4"  
D40V2, continuous
D40V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 20(17P12) MUTATED     14    9
  DEL PEAK 20(17P12) WILD-TYPE   17   13
        clus
vv       DEL PEAK 20(17P12) MUTATED DEL PEAK 20(17P12) WILD-TYPE
  FEMALE                          9                           13
  MALE                           14                           17
D40V4, continuous
                         V1.D                            V2 
              "Time to Death"                         "AGE" 
                           V3                            V4 
                     "GENDER" "KARNOFSKY.PERFORMANCE.SCORE" 
> q(save="no")
