Unique Name	Descriptor	Wide Peak Limits	Peak Limits	Region Limits	q values	Residual q values after removing segments shared with higher peaks	Broad or Focal	Amplitude Threshold	TCGA-BI-A0VR-01A-11D-A10T-01	TCGA-BI-A0VS-01A-11D-A10T-01	TCGA-BI-A20A-01A-11D-A14V-01	TCGA-C5-A0TN-01A-21D-A14V-01	TCGA-C5-A1BE-01B-11D-A13V-01	TCGA-C5-A1BF-01B-11D-A13V-01	TCGA-C5-A1BI-01B-11D-A13V-01	TCGA-C5-A1BJ-01A-11D-A13V-01	TCGA-C5-A1BK-01B-11D-A13V-01	TCGA-C5-A1BL-01A-11D-A13V-01	TCGA-C5-A1BM-01A-11D-A13V-01	TCGA-C5-A1BN-01B-11D-A14V-01	TCGA-C5-A1M5-01A-11D-A13V-01	TCGA-C5-A1M6-01A-11D-A13V-01	TCGA-C5-A1M7-01A-11D-A13V-01	TCGA-C5-A1M8-01A-21D-A13V-01	TCGA-C5-A1M9-01A-11D-A13V-01	TCGA-C5-A1ME-01A-11D-A13V-01	TCGA-C5-A1MF-01A-11D-A13V-01	TCGA-C5-A1MH-01A-11D-A14V-01	TCGA-C5-A1MI-01A-11D-A14V-01	TCGA-C5-A1MJ-01A-11D-A14V-01	TCGA-C5-A1MK-01A-11D-A14V-01	TCGA-C5-A1ML-01A-11D-A14V-01	TCGA-C5-A1MN-01A-11D-A14V-01	TCGA-C5-A1MP-01A-11D-A14V-01	TCGA-C5-A2LT-01A-11D-A18H-01	TCGA-C5-A2LV-01A-11D-A18H-01	TCGA-C5-A2LX-01A-11D-A18H-01	TCGA-C5-A2LY-01A-31D-A18H-01	TCGA-C5-A2M1-01A-11D-A18H-01	TCGA-C5-A2M2-01A-21D-A18H-01	TCGA-DG-A2KJ-01A-11D-A18H-01	TCGA-DG-A2KK-01A-11D-A17U-01	TCGA-DG-A2KL-01A-11D-A17U-01	TCGA-DG-A2KM-01A-11D-A17U-01	TCGA-DR-A0ZL-01A-11D-A10T-01	TCGA-DR-A0ZM-01A-12D-A10T-01	TCGA-DS-A0VK-01A-21D-A10T-01	TCGA-DS-A0VL-01A-21D-A10T-01	TCGA-DS-A0VM-01A-11D-A10T-01	TCGA-DS-A0VN-01A-21D-A10T-01	TCGA-EA-A1QT-01A-11D-A14V-01	TCGA-EK-A2GZ-01A-11D-A17U-01	TCGA-EK-A2H0-01A-11D-A17U-01	TCGA-EK-A2H1-01A-11D-A17U-01	TCGA-EK-A2IP-01A-11D-A17U-01	TCGA-EK-A2PG-01A-11D-A18H-01	TCGA-EK-A2PI-01A-11D-A18H-01	TCGA-EK-A2PK-01A-11D-A18H-01	TCGA-EK-A2PL-01A-11D-A18H-01	TCGA-EK-A2PM-01A-11D-A18H-01	TCGA-EK-A2R7-01A-11D-A18H-01	TCGA-EK-A2R8-01A-21D-A18H-01	TCGA-EK-A2R9-01A-11D-A18H-01	TCGA-EK-A2RA-01A-11D-A18H-01	TCGA-EK-A2RB-01A-11D-A18H-01	TCGA-EK-A2RC-01A-11D-A18H-01	TCGA-EK-A2RE-01A-11D-A18H-01	TCGA-EK-A2RJ-01A-11D-A18H-01	TCGA-EK-A2RK-01A-11D-A18H-01	TCGA-EK-A2RL-01A-11D-A18H-01	TCGA-EK-A2RM-01A-21D-A18H-01	TCGA-EK-A2RO-01A-11D-A18H-01	TCGA-EX-A1H5-01A-31D-A13V-01	TCGA-FU-A23K-01A-11D-A16M-01	TCGA-FU-A23L-01A-11D-A16M-01	TCGA-FU-A2QG-01A-11D-A18H-01	
Amplification Peak  1	3q26.31 	chr3:168026373-172485872(probes 351697:354279)    	chr3:172149749-172377147(probes 354053:354210)    	chr3:160933729-198022430(probes 348676:366989)  	0.00085442	 0.00085442		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	2	2	2	0	2	0	1	1	1	2	1	0	2	2	1	2	0	1	2	1	0	0	1	2	1	2	2	1	2	2	0	2	1	2	1	0	2	0	1	2	1	1	2	2	0	1	0	1	1	0	0	1	1	1	2	1	1	1	0	0	0	2	2	2	1	0	2	0	
Amplification Peak  2	4q12    	chr4:55996856-56404264(probes 397436:397667)        	chr4:56028846-56403716(probes 397453:397666)        	chr4:55996904-56409114(probes 397437:397669)      	0.12056	    0.12056		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Amplification Peak  3	6q12    	chr6:65937375-66550265(probes 605969:606336)        	chr6:66160754-66211039(probes 606109:606129)        	chr6:66160754-66217127(probes 606109:606132)      	0.20149	    0.20149		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	2	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Amplification Peak  4	7p11.2  	chr7:55051332-57919731(probes 699260:700269)        	chr7:55052265-55132079(probes 699261:699351)        	chr7:55052265-55133032(probes 699261:699354)      	0.10034	    0.10034		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	
Amplification Peak  5	8q24.21 	chr8:1-146364022(probes 748239:829819)               	chr8:128292001-128337418(probes 819511:819532)    	chr8:128292001-128340907(probes 819511:819535)  	0.061034	    0.86847		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	2	0	0	0	0	0	0	0	0	1	0	2	1	0	0	0	0	1	0	0	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	1	2	0	1	0	1	0	0	2	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	1	0	2	2	0	
Amplification Peak  6	8q24.21 	chr8:129029315-129031733(probes 820018:820022)    	chr8:129029405-129031616(probes 820019:820021)    	chr8:128972722-129032616(probes 819993:820024)  	0.077266	    0.12921		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	2	0	0	0	0	0	0	0	0	1	0	2	1	0	0	2	0	1	0	0	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	2	1	2	0	1	0	1	0	0	2	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	1	0	1	1	0	
Amplification Peak  7	9p24.1  	chr9:5722416-5791681(probes 833166:833199)            	chr9:5722793-5789983(probes 833167:833198)            	chr9:5603335-5792155(probes 833119:833201)          	0.011561	   0.011561		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	1	0	0	1	0	0	1	0	0	0	0	0	2	0	2	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	
Amplification Peak  8	11p13   	chr11:31516674-41301981(probes 998558:1004637)     	chr11:35671708-35896931(probes 1001501:1001623)    	chr11:35671708-35900321(probes 1001501:1001626)  	0.12921	    0.12921		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Amplification Peak  9	11q13.3 	chr11:69699947-70747182(probes 1015402:1015959)    	chr11:69874018-70401153(probes 1015462:1015737)    	chr11:67960094-70808759(probes 1014475:1015997)  	0.0048924	   0.014393		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	1	2	0	0	1	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Amplification Peak 10	11q22.1 	chr11:101751242-102266642(probes 1034772:1034891)	chr11:101752254-102263272(probes 1034773:1034890)	chr11:99642993-104839099(probes 1033067:1036394)	6.9519e-09	 4.9314e-08		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	1	2	0	0	0	2	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	2	0	0	0	0	0	0	2	0	1	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	
Amplification Peak 11	13q22.1 	chr13:74197347-74221764(probes 1161127:1161140)    	chr13:74197478-74221657(probes 1161128:1161139)    	chr13:74177851-74224059(probes 1161113:1161142)  	0.079443	   0.079443		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	2	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	
Amplification Peak 12	16p13.13	chr16:11883519-11927917(probes 1286815:1286838)    	chr16:11885655-11922718(probes 1286816:1286837)    	chr16:11878293-12039683(probes 1286813:1286879)  	0.015199	   0.015199		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	
Amplification Peak 13	17q12   	chr17:37848534-37869191(probes 1336786:1336815)    	chr17:37848546-37869176(probes 1336787:1336814)    	chr17:37848546-37917511(probes 1336787:1336849)  	0.042078	   0.042078		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	
Amplification Peak 14	17q25.1 	chr17:73185658-74083947(probes 1355404:1355746)    	chr17:73951716-74082402(probes 1355695:1355745)    	chr17:73951716-74087966(probes 1355695:1355748)  	0.11657	    0.11657		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	
Amplification Peak 15	20q11.21	chr20:26196264-30356590(probes 1442056:1442301)    	chr20:30294560-30352329(probes 1442277:1442300)    	chr20:26197900-32158582(probes 1442057:1443250)  	0.00014192	 0.00014192		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	1	2	2	0	1	0	0	0	0	1	0	0	0	2	0	0	0	1	0	0	1	0	2	0	1	1	1	0	0	0	0	0	0	2	2	0	0	0	2	0	0	0	1	1	0	0	0	1	2	0	0	1	2	0	1	1	0	0	0	0	0	0	0	0	0	2	0	0	
Amplification Peak 16	21q22.2 	chr21:39788697-40688364(probes 1478192:1478944)    	chr21:39788805-40680922(probes 1478193:1478943)    	chr21:39788805-40693622(probes 1478193:1478946)  	0.20149	    0.20149		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	1	0	1	0	0	0	0	0	
Deletion Peak  1	1p36.22 	chr1:1-224351022(probes 1:114359)                   	chr1:8919395-12257702(probes 3449:5025)              	chr1:6743817-24540227(probes 2172:11596)             	0.026322	   0.026322		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	
Deletion Peak  2	2q22.1  	chr2:139655617-143637838(probes 201417:203847)    	chr2:140976294-142894275(probes 202139:203410)    	chr2:142042799-142047443(probes 202775:202776)    	0.0011282	   0.028481		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	
Deletion Peak  3	2q37.2  	chr2:214143901-243199373(probes 243389:260562)    	chr2:237070083-237079520(probes 257421:257422)    	chr2:199685934-243199373(probes 234944:260562)    	4.1866e-08	 2.6917e-07		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	1	1	1	0	1	0	0	1	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	1	0	0	1	1	0	1	1	1	1	0	0	1	0	0	0	0	0	0	0	1	0	0	1	0	0	1	0	0	0	0	1	
Deletion Peak  4	3p22.1  	chr3:40578683-42218893(probes 283542:284375)        	chr3:41286244-42218893(probes 284116:284375)        	chr3:41611229-41613346(probes 284246:284247)        	0.093532	   0.096338		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	1	1	0	1	1	0	0	1	1	1	0	0	0	1	0	0	0	0	1	0	0	1	1	0	0	1	1	0	0	0	0	0	0	0	1	0	1	0	1	1	0	0	0	0	1	0	1	0	1	0	1	0	0	0	1	1	1	0	0	0	0	0	1	0	1	0	
Deletion Peak  5	3p14.1  	chr3:53917346-93784545(probes 290110:311515)        	chr3:65334739-66048418(probes 297393:297941)        	chr3:65686268-65686672(probes 297668:297669)        	0.10416	    0.09954		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	1	1	0	1	1	1	0	1	1	1	0	0	0	1	0	0	1	0	1	0	0	1	1	0	0	0	1	0	0	0	0	0	0	0	1	0	1	0	1	1	1	1	1	0	1	1	1	0	1	0	1	0	0	0	1	1	1	0	0	0	1	0	1	0	1	0	
Deletion Peak  6	4q35.2  	chr4:187133825-188227950(probes 468841:469463)    	chr4:187383866-187480925(probes 469028:469034)    	chr4:186983343-188520112(probes 468769:469637)    	3.7215e-06	 3.7933e-06		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	1	1	1	0	0	0	0	0	0	0	1	1	1	0	0	0	1	0	0	1	0	0	1	1	0	1	1	1	0	0	0	1	0	0	0	1	0	0	0	0	0	0	1	1	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	1	0	1	0	1	0	0	2	
Deletion Peak  7	5q35.3  	chr5:146936521-180915260(probes 549547:570336)    	chr5:179110851-179207921(probes 569767:569800)    	chr5:179143958-179151339(probes 569773:569774)    	0.12679	    0.12766		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	1	0	1	1	1	0	1	0	0	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	1	0	1	0	1	0	1	2	
Deletion Peak  8	6q26    	chr6:136658259-171115067(probes 646686:666875)    	chr6:163730532-163841899(probes 663528:663616)    	chr6:155719548-165457647(probes 658683:664536)    	0.013595	   0.013595		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	1	0	0	0	1	0	0	1	1	0	1	0	0	1	1	1	0	0	0	0	0	0	0	0	0	1	0	0	2	0	1	0	1	0	0	0	0	0	1	0	1	0	0	0	0	1	0	1	1	1	0	0	0	0	1	1	0	0	1	0	1	0	0	0	0	0	
Deletion Peak  9	7q36.2  	chr7:109598162-159138663(probes 722579:748238)    	chr7:153999874-154686956(probes 745599:746119)    	chr7:154381784-154382956(probes 745860:745861)    	0.14999	      0.147		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	1	0	1	0	0	1	
Deletion Peak 10	10q23.31	chr10:89313008-90034038(probes 949870:950514)      	chr10:89577212-89611620(probes 950058:950078)      	chr10:89380318-89998943(probes 949916:950483)      	0.0012981	  0.0011828		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	1	1	0	0	0	1	0	1	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	1	1	1	1	0	2	0	0	1	
Deletion Peak 11	11q14.2 	chr11:83165646-87846595(probes 1023197:1026009)    	chr11:85950262-85992174(probes 1024752:1024768)    	chr11:85641632-86003044(probes 1024523:1024777)    	0.068567	   0.067207		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	1	1	0	0	0	0	1	0	1	1	0	1	0	1	1	0	1	1	1	1	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	1	0	0	0	0	1	0	0	1	0	0	2	1	0	0	0	0	1	0	0	1	1	0	0	0	
Deletion Peak 12	11q25   	chr11:125028108-135006516(probes 1049881:1056073)	chr11:134022024-134097225(probes 1056011:1056043)	chr11:104518766-135006516(probes 1036299:1056073)	2.0491e-07	 2.0455e-07		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	1	1	1	1	1	0	1	1	1	1	1	1	1	0	1	0	1	1	0	1	1	1	1	0	0	0	1	1	1	0	1	0	1	0	0	1	0	1	1	0	0	1	1	0	0	1	1	1	0	0	1	0	0	1	1	0	0	0	0	1	1	0	1	1	0	0	0	
Deletion Peak 13	13q12.12	chr13:1-40185910(probes 1130052:1143233)           	chr13:25451994-25499842(probes 1132968:1132991)    	chr13:1-62943883(probes 1130052:1155412)           	1.0813e-05	  0.0050991		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	1	0	0	1	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	1	0	0	0	1	0	0	0	1	1	1	0	1	0	0	0	1	1	1	1	1	1	0	1	0	1	1	0	1	1	1	0	1	0	1	0	
Deletion Peak 14	13q13.2 	chr13:1-60590549(probes 1130052:1154053)           	chr13:34386735-34413119(probes 1139249:1139263)    	chr13:1-62943883(probes 1130052:1155412)           	2.5035e-06	   0.002036		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	1	0	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	0	1	0	0	0	1	0	0	0	1	1	1	0	1	0	0	1	1	1	1	0	1	1	0	1	0	1	1	0	1	0	0	0	1	0	1	0	
Deletion Peak 15	14q32.31	chr14:74511911-103982877(probes 1216888:1235597)  	chr14:102969926-103014332(probes 1235099:1235114)	chr14:102882025-103034506(probes 1235048:1235120)	0.12432	    0.12766		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak 16	16q24.2 	chr16:1-90354753(probes 1280751:1321565)             	chr16:87333133-90354753(probes 1321027:1321565)    	chr16:86347359-90354753(probes 1320050:1321565)    	0.11524	    0.11631		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	1	1	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak 17	18q21.2 	chr18:48255169-51678342(probes 1385007:1387292)    	chr18:48552482-48616860(probes 1385196:1385321)    	chr18:48582210-48582416(probes 1385259:1385260)    	0.018499	   0.018184		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	1	0	1	0	0	1	1	0	1	1	2	0	0	0	0	1	0	0	0	0	0	1	0	1	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	
Deletion Peak 18	19p13.3 	chr19:1-55824633(probes 1401256:1423645)             	chr19:1-1537245(probes 1401256:1401494)               	chr19:1-1726232(probes 1401256:1401531)               	0.070634	   0.070634		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	1	0	1	1	1	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	1	0	
Deletion Peak 19	21q21.1 	chr21:1-23095995(probes 1462519:1467479)           	chr21:22104880-22177088(probes 1466770:1466823)    	chr21:21419613-22348249(probes 1466339:1466956)    	0.022633	   0.021885		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	1	0	0	0	1	0	0	1	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	
Amplification Peak  1 - CN values	3q26.31 	chr3:168026373-172485872(probes 351697:354279)    	chr3:172149749-172377147(probes 354053:354210)    	chr3:160933729-198022430(probes 348676:366989)  	0.00085442	 0.00085442		Actual Copy Change Given	1.0568	1.2357	0.98266	0.17586	4.7235	0.049966	0.49185	0.42716	0.81747	1.539	0.6802	0.094668	1.5903	1.5853	0.40407	0.92457	0.22228	0.36577	2.9917	0.60268	0.20364	0.20595	0.47133	5.0756	0.66092	0.93205	2.2752	0.50217	0.95345	1.8787	0.0081959	2.9905	0.85047	0.95527	0.83019	0.24934	1.0964	0.0033714	0.82694	2.3232	0.75178	0.36169	0.98423	2.0787	0.041758	0.67307	0.058081	0.75433	0.88951	0.015185	0.13617	0.31154	0.73965	0.53889	6	0.87707	0.74292	0.60401	0.027681	-0.175	0.044574	1.4653	1.719	1.1863	0.76083	0.082476	1.1516	0.030351	
Amplification Peak  2 - CN values	4q12    	chr4:55996856-56404264(probes 397436:397667)        	chr4:56028846-56403716(probes 397453:397666)        	chr4:55996904-56409114(probes 397437:397669)      	0.12056	    0.12056		Actual Copy Change Given	-0.15495	-0.03054	0.030732	-0.77521	0.0069435	0.002022	0.014308	0.0051359	0.0043021	0.0085527	0.020203	-0.70456	-0.0016629	-0.030985	-0.0039422	0.024586	0.19664	-0.024472	2.5814	-0.0094046	-0.34004	0	0.016688	-0.39016	0.13931	0.4582	-0.34916	-0.42127	-0.40511	-0.013677	0	-0.0027718	-0.41564	-0.043781	0.0012423	-0.17158	-0.46324	-0.00065157	0.0078684	0.0063871	-0.047509	-0.29438	-0.17027	6	0.016146	-0.15091	-0.069064	-0.57457	0.10376	-0.31587	0.0093464	-0.44695	-0.61276	-0.26588	-0.0043495	-0.3527	0.019783	-0.00050804	0.0050722	-0.14678	-0.66694	-0.01744	-0.13199	-0.0099891	-0.66827	0.1592	0.0282	0.006421	
Amplification Peak  3 - CN values	6q12    	chr6:65937375-66550265(probes 605969:606336)        	chr6:66160754-66211039(probes 606109:606129)        	chr6:66160754-66217127(probes 606109:606132)      	0.20149	    0.20149		Actual Copy Change Given	-0.21997	1.0214	-0.57021	0.071499	0.0012481	0.09856	0.038194	0.0063871	0.010703	-0.59745	-0.62623	-0.69248	0.0038854	0.53287	0.38706	-0.81661	0.22006	0	-0.022058	0.14013	0.50807	0.0070826	-0.011249	0.39539	0.068481	-0.0084385	-0.0076101	-0.418	0.018837	-0.022469	-0.0083005	-0.010731	0.45397	-0.907	-0.40937	-0.13755	0.042028	0.00080951	0.011909	0.00027728	-0.72904	0.0064463	6	-0.081605	0.92189	-0.024905	0.017404	-0.29272	-0.21788	-0.30651	0.012584	0.36491	0.013816	0.011772	-0.010521	0.27379	-0.73697	-0.54347	0.0028512	0.085166	0.036452	-0.014751	0.27663	-0.0069522	0.058818	-0.012358	-0.26404	0.027713	
Amplification Peak  4 - CN values	7p11.2  	chr7:55051332-57919731(probes 699260:700269)        	chr7:55052265-55132079(probes 699261:699351)        	chr7:55052265-55133032(probes 699261:699354)      	0.10034	    0.10034		Actual Copy Change Given	0.0077783	-0.018216	0.037043	0.8323	0.0026357	-0.0020336	0.0036076	0.013353	0	0.35745	0.00033391	0.0023965	-0.00097017	-0.037802	-0.00574	0.025522	-0.25624	0.13368	-0.50318	-0.13574	-0.40519	0.006831	0.20272	0.04524	0.090472	-0.015329	0.2839	0.016565	-0.35692	0.53872	0.00032639	-0.0072221	0.2216	-0.013642	-0.0096308	0.06431	6	0.0022608	3.2309	0	-0.04514	0.025194	-0.02407	0.1649	-0.011611	0.0015668	0.061794	0.98473	0.072971	0.018523	0.00086841	-0.028147	0.023137	0.027991	0.00096069	-0.016638	0.64352	0.0040073	0.75605	0.23117	0.02785	-0.015583	0.23349	-0.0069522	-0.68819	-0.00069303	0.20188	0.011056	
Amplification Peak  5 - CN values	8q24.21 	chr8:1-146364022(probes 748239:829819)               	chr8:128292001-128337418(probes 819511:819532)    	chr8:128292001-128340907(probes 819511:819535)  	0.061034	    0.86847		Actual Copy Change Given	0.0079175	2.3304	0.015612	0.029149	0.015447	-0.028901	0.02806	0.040751	0.096961	0.046355	0.38244	0.027817	1.5252	0.51821	0.0018772	0.052705	0.20396	-0.41377	0.41761	0.18328	0.11021	-0.025386	0.45426	-0.40868	0.0030896	0.41412	-0.0040162	0.43885	0.031718	-0.0069195	-0.0036011	0	0.23631	-0.0036101	0	0.026241	0.33105	-0.0030061	0.01149	0.69933	1.4059	-0.28644	0.471	0.13184	0.70662	-0.022469	0.10599	1.7184	-0.011591	0.65535	0.042078	0.75653	0.040786	0.010285	-0.00088832	-0.081738	0.012516	0.029794	-0.0034394	0	0.65792	-0.0078863	-0.11757	0.62602	0.067805	6	1.5933	-0.024999	
Amplification Peak  6 - CN values	8q24.21 	chr8:129029315-129031733(probes 820018:820022)    	chr8:129029405-129031616(probes 820019:820021)    	chr8:128972722-129032616(probes 819993:820024)  	0.077266	    0.12921		Actual Copy Change Given	0.0079175	1.1514	0.011278	0.029149	0.015447	-0.028901	0.02806	0.040751	0.096961	0.046355	0.38244	0.027817	1.5252	0.51821	0.0018772	0.052705	6	-0.41377	0.41761	0.18328	0.049362	-0.025386	0.45426	-0.40868	0.0030896	0.41412	-0.0040162	0.43885	0.031718	-0.0069195	-0.011473	0	0.23631	0.0070662	0	0.026241	0.012903	-0.0030061	1.3373	0.69933	1.4059	-0.28644	0.471	0.13184	0.70662	-0.022469	0.10599	1.7184	-0.011591	0.65535	0.042078	0.75653	0.040786	0.010285	-0.00088832	-0.081738	0.012516	0.029794	-0.0034394	0	0.65792	-0.0078863	-0.11757	0.62602	0.067805	0.53362	0.42553	-0.024999	
Amplification Peak  7 - CN values	9p24.1  	chr9:5722416-5791681(probes 833166:833199)            	chr9:5722793-5789983(probes 833167:833198)            	chr9:5603335-5792155(probes 833119:833201)          	0.011561	   0.011561		Actual Copy Change Given	0.037576	0.015866	-0.28125	0.0075414	0.0048175	0.006109	-0.00013862	-0.2714	0.036653	0	0.012294	-0.0020764	-0.0031859	-0.023292	-0.00089604	0.022946	-0.27993	-0.10822	0.017684	-0.012438	-0.42245	-0.31213	-0.011076	0.046367	-0.3411	0.19338	0.93874	0.41195	0.70438	0.010771	0.031014	0.82819	-0.41113	0.0464	0.38413	0.20473	0.034223	-0.00674	-0.010084	0.0043021	6	0.042874	6	-0.59867	0.03214	0.59314	-0.040616	0.64396	0.016845	0.34243	-0.64428	-0.43767	-0.027127	0.040929	-0.0041796	0	-0.0026322	-0.019817	-0.79439	0.089127	0.020623	0.020063	0.23705	0.031825	0.027224	5.8446	0.16205	-0.032378	
Amplification Peak  8 - CN values	11p13   	chr11:31516674-41301981(probes 998558:1004637)     	chr11:35671708-35896931(probes 1001501:1001623)    	chr11:35671708-35900321(probes 1001501:1001626)  	0.12921	    0.12921		Actual Copy Change Given	0.11536	-0.018353	-0.0035344	-0.033439	0.0093098	-0.11796	0	-0.015329	-0.41498	-0.015526	-0.0087951	4.0916	0.029747	0.53046	-0.26671	-0.84817	0.20741	-0.091891	0.0054139	-0.15384	-0.33001	-0.33017	-0.028557	-0.40577	-0.0090891	-0.037082	0.35311	-0.41474	0.049256	0.00068139	0.0033299	0.0053873	-0.0087146	0.010547	-0.013815	3.3465	-0.45685	0	-0.16997	-0.0063668	-0.09543	-0.28555	-0.0055364	0.1625	0.6792	0.11949	-0.020549	-0.27214	0.12344	-0.0056437	-0.62887	0.36158	-0.024189	-0.010646	0.0029653	-0.3933	-0.008794	-0.012335	-0.0060893	0.072593	-0.67131	0.0041632	-0.52634	-0.0022496	-0.68965	-0.0023553	-0.37921	-0.0024788	
Amplification Peak  9 - CN values	11q13.3 	chr11:69699947-70747182(probes 1015402:1015959)    	chr11:69874018-70401153(probes 1015462:1015737)    	chr11:67960094-70808759(probes 1014475:1015997)  	0.0048924	   0.014393		Actual Copy Change Given	-0.16186	-0.018353	-0.0035344	0.5885	2.7946	-0.68524	0	0.38419	-0.0016629	-0.015526	-0.0087951	0.56157	-0.0088346	-0.67288	-0.26671	-0.88258	0.22576	-0.091891	0.87109	-0.15384	-0.38729	-0.33017	-0.00070991	-0.40577	-0.0090891	-0.037082	0.35311	0.41299	0.019352	0.0090312	0.0033299	0.0053873	0.23452	-0.89817	-0.011799	-0.00012476	-0.11054	0	-0.16997	-0.0063668	-0.052714	-0.28555	6	0.1625	0.01447	0.11949	1.6384	-0.27214	2.2147	-0.0056437	0.014925	-0.022261	-0.02686	-0.010646	-0.012907	-0.3933	-0.008794	-0.012335	-0.0060893	0.072593	-0.67131	0.0041632	-0.12382	-0.65599	-0.67949	-0.012498	-0.032723	-0.0024788	
Amplification Peak 10 - CN values	11q22.1 	chr11:101751242-102266642(probes 1034772:1034891)	chr11:101752254-102263272(probes 1034773:1034890)	chr11:99642993-104839099(probes 1033067:1036394)	6.9519e-09	 4.9314e-08		Actual Copy Change Given	-0.16186	-0.018353	0.59728	6	-0.52369	-0.66281	0	2.2041	1.2125	-0.61445	-0.60647	3.2185	-0.76064	-0.62398	-0.26671	-0.83752	0.21293	-0.50511	-0.72541	-0.14438	-0.32368	-0.33017	-0.34137	-0.40577	0.015208	-0.037082	0.35311	6	-0.82464	6	0.0033299	-0.82718	0.26012	-0.88109	-0.0095426	0.017023	1.3654	0	0.54535	6	-0.099668	-0.28406	-0.87128	-0.34559	-0.0038779	0.12759	0.75414	-0.21775	-0.67937	-0.0070576	0.014925	-0.40257	-0.02686	-0.010646	-0.71599	-0.35761	-0.017116	-0.026121	-0.0026956	0.36756	-0.67297	-0.81614	-0.12382	0.4896	-0.67949	-0.012498	-0.032723	-0.0024788	
Amplification Peak 11 - CN values	13q22.1 	chr13:74197347-74221764(probes 1161127:1161140)    	chr13:74197478-74221657(probes 1161128:1161139)    	chr13:74177851-74224059(probes 1161113:1161142)  	0.079443	   0.079443		Actual Copy Change Given	-0.1092	-0.020549	-0.02421	0.020592	0.00049367	-0.27615	0.006109	-0.4141	-0.017781	6	0.43638	1.7224	-0.016979	-0.019177	-0.013741	0.040081	0.20671	-0.33486	-0.029311	-0.13691	-0.13899	0.2974	-0.0050013	-0.013864	-0.061652	-0.0095426	-0.028218	0.022862	-0.38459	-0.01409	0.59782	0.00011215	-0.37549	-0.0033407	-0.005814	-0.03504	-0.43652	-0.0039748	0.0039301	-0.013116	1.1792	-0.30795	-0.81626	-0.089839	0.69615	-0.18345	0.0051359	0.59476	-0.65445	-0.30956	0.088441	-0.0061566	-0.22575	-0.47342	-0.00047257	-0.39742	-0.016567	0.0079641	0.76553	0.20748	-0.68031	-0.013953	0.3928	-0.031137	-0.66263	-0.046647	-0.38201	0.002571	
Amplification Peak 12 - CN values	16p13.13	chr16:11883519-11927917(probes 1286815:1286838)    	chr16:11885655-11922718(probes 1286816:1286837)    	chr16:11878293-12039683(probes 1286813:1286879)  	0.015199	   0.015199		Actual Copy Change Given	-0.017391	0.18707	-0.21985	-0.055667	-0.0016629	-0.028491	-0.020275	-0.013923	-0.0013858	-0.042169	-0.011693	-0.059636	-0.0012473	6	0.36617	-0.10821	-0.25914	-0.35025	0.02525	0.14935	0.050762	6	-0.0055543	-0.31118	-0.010055	0.0027745	-0.032041	-0.0123	0.07254	0.012097	0.028903	0.0085563	1.5281	0.015291	1.4885	0.00060725	-0.033299	0.001567	-0.00088048	-0.010045	0.090235	0.022444	-0.056311	0.060396	-0.012989	0.66845	-0.033549	-0.60245	1.0825	-0.032174	-0.070501	-0.38688	-0.052106	-0.0049844	-0.027044	0.033226	-0.03504	0.46132	-0.021623	-0.19024	-0.0029587	0.75378	-0.39542	-0.012746	0	-0.064289	0.24809	-0.02582	
Amplification Peak 13 - CN values	17q12   	chr17:37848534-37869191(probes 1336786:1336815)    	chr17:37848546-37869176(probes 1336787:1336814)    	chr17:37848546-37917511(probes 1336787:1336849)  	0.042078	   0.042078		Actual Copy Change Given	-0.020001	-0.027671	0.30314	-0.070971	-0.021647	-0.0038779	-0.018902	-0.021235	-0.017116	-0.032265	-0.029964	-0.013173	0.026514	0.93841	-0.0025582	-0.070902	0.91986	0.019843	-0.013815	-0.14335	0.11773	-0.045048	-0.033742	0.052831	-0.14627	0.47135	-0.024251	0	-0.39025	-0.00083076	0.027585	0.0052483	0.18692	0.014313	-0.070916	0	-0.020855	-0.0050814	-0.013175	0.00013863	3.7656	-0.2812	-0.077774	0.084065	-0.0067775	-0.043251	-0.071472	-0.20448	0.096089	-0.01849	-0.0021804	-0.40146	-0.064258	-0.10959	0.4921	0.1901	0	-0.01487	-0.011919	-0.11706	-0.67113	-0.0033243	6	-0.00062349	-0.039937	0.084643	-0.0071958	-0.018466	
Amplification Peak 14 - CN values	17q25.1 	chr17:73185658-74083947(probes 1355404:1355746)    	chr17:73951716-74082402(probes 1355695:1355745)    	chr17:73951716-74087966(probes 1355695:1355748)  	0.11657	    0.11657		Actual Copy Change Given	-0.020001	-0.027671	0.30314	-0.070971	-0.021647	0.0093098	-0.018902	-0.016704	0.0051624	-0.015802	-0.029964	-0.15857	0.026514	0.93841	-0.0025582	-0.070902	0.25308	0.019843	0.096089	-0.14335	0.1951	-0.062226	-0.025226	0.045204	-0.13013	0.47135	-0.016704	0	-0.0017731	-0.00083076	0.033549	-0.01289	0.17589	0.014313	-0.054016	0	-0.020855	-0.0050814	5.8564	0.00013863	0.024897	-0.2812	-0.47237	0.084065	-0.0059522	-0.039394	3.3487	-0.18626	0.12933	-0.01849	-0.0021804	0.37422	-0.064258	-0.18144	0.46849	0.31425	0	-0.01487	-0.011919	-0.11706	-0.69254	0.016286	0.24047	-0.00062349	-0.039937	0.080744	-0.0071958	-0.018466	
Amplification Peak 15 - CN values	20q11.21	chr20:26196264-30356590(probes 1442056:1442301)    	chr20:30294560-30352329(probes 1442277:1442300)    	chr20:26197900-32158582(probes 1442057:1443250)  	0.00014192	 0.00014192		Actual Copy Change Given	0.83531	2.0784	6	-0.065481	0.52398	0.010146	-0.013953	0.11374	0.0011093	0.33927	-0.033461	-0.098777	-0.016979	0.95304	0.013148	-0.060175	0.204	0.57138	0.033127	0.0072217	0.78685	0.28861	1.2074	0.047991	0.53644	0.53204	0.43834	-0.0023553	0.074991	0.033267	0.10074	0.020456	0.21299	0.94137	1.3959	0.1643	-0.017062	0.00087344	6	0.00097064	0.056748	0.023286	0.63189	0.45706	0.1592	0.1786	-0.0189	0.76331	3.2927	-0.018107	-0.021885	0.3045	0.98989	-0.16521	0.78287	0.5701	-0.026714	-0.030221	-0.029647	0.29931	-0.018902	0.028903	0.12429	0.011465	-0.047291	1.1161	0.24825	-0.02185	
Amplification Peak 16 - CN values	21q22.2 	chr21:39788697-40688364(probes 1478192:1478944)    	chr21:39788805-40680922(probes 1478193:1478943)    	chr21:39788805-40693622(probes 1478193:1478946)  	0.20149	    0.20149		Actual Copy Change Given	-0.048176	-0.29804	-0.29367	-0.82995	0	0.010146	0.00055459	-0.03504	0.014051	0.011051	0.0085312	1.8661	0.025812	0.5102	0.009245	0.0028115	-0.23826	0.026575	0.016985	0.34827	0.539	-0.15439	0.15142	0.038657	0.049438	0.49597	-0.32867	-0.42811	0.061794	0.021332	0.016425	0.012768	-0.42276	0.0087363	0.39662	-0.062167	-0.0018324	0.00010449	0.014001	-0.12043	0.023798	0.043865	6	-0.048478	-0.0012694	0.020343	-0.012162	-0.26552	0.1252	-0.32681	-0.05398	0.32874	0.00082316	-0.26243	-0.0093231	0.40029	0.024268	0.023333	-0.0010336	-0.18207	0.65001	-0.76595	0.50012	0.005798	0.055373	-0.0012473	-0.38908	-0.0039424	
Deletion Peak  1 - CN values	1p36.22 	chr1:1-224351022(probes 1:114359)                   	chr1:8919395-12257702(probes 3449:5025)              	chr1:6743817-24540227(probes 2172:11596)             	0.026322	   0.026322		Actual Copy Change Given	0.30697	0.052668	0.047126	-0.81905	-0.0012473	0.012097	-0.023554	0.0019418	-0.0062726	0.0028527	0.53215	-0.082064	0.018212	0.59775	0.75526	-0.023761	-0.015054	-0.076053	-0.7302	0.27868	-0.48629	-0.57358	0.3813	0.45431	0.042489	0.0062481	-0.022306	0.019119	-0.35088	-0.0042929	0.029606	-0.0015179	0.18903	0.021447	0.3679	-0.025756	-0.041298	0.00039867	0.0039124	-0.011499	-0.67181	0.37545	-0.077759	-0.035993	-0.020687	0	-0.010899	-0.21154	-0.19875	-0.035176	0.0035052	-0.38688	0.385	0.023987	-0.0011654	0.94592	-0.0030473	0	-0.024724	-0.33283	0.020903	-0.0048461	-0.55447	1.155	-0.030031	0.00597	0.037924	0.0059051	
Deletion Peak  2 - CN values	2q22.1  	chr2:139655617-143637838(probes 201417:203847)    	chr2:140976294-142894275(probes 202139:203410)    	chr2:142042799-142047443(probes 202775:202776)    	0.0011282	   0.028481		Actual Copy Change Given	-0.058235	0.20499	0.29756	0.072599	0.003191	0.0087208	-0.18156	-0.0050996	0.016705	-0.029995	0	-0.72833	-0.0044312	0.51751	0.0068788	-0.82258	-0.022376	-0.019118	-0.040562	-0.13363	0.050164	0.096613	-0.010663	-0.039698	0.053847	-0.0067773	-0.034086	-0.9421	-0.0696	-0.046718	-0.015054	0.7402	0.20427	-0.015537	-0.39975	-0.0036768	0.042005	-0.0012058	-0.018951	0.0036076	-0.00088011	-0.25515	0.10409	0.28485	0.015114	0.23752	-0.83009	-0.29147	0.1478	0	0	0.36092	0.032169	-0.25358	0.0062822	-0.06543	0.038206	0.014735	0	-0.30322	0	0.00097064	0.24187	0.005798	0.0063871	0.010651	-0.038986	0.015801	
Deletion Peak  3 - CN values	2q37.2  	chr2:214143901-243199373(probes 243389:260562)    	chr2:237070083-237079520(probes 257421:257422)    	chr2:199685934-243199373(probes 234944:260562)    	4.1866e-08	 2.6917e-07		Actual Copy Change Given	-0.058235	-0.33248	-0.62118	-0.84262	0.0049969	-0.67386	-0.18156	-0.013698	-0.41511	-0.029995	-0.016388	-0.8059	0.0024969	0.50481	-0.0053426	-0.82604	-0.0077482	-0.015638	-0.031905	-0.14644	0.0097959	0.10264	-0.010663	-0.037192	0.015954	-0.033132	-0.063838	-0.0031859	-0.088109	-0.57605	-0.014228	-0.033703	0.2014	0.0036074	-0.39975	-0.19275	-0.47346	-0.0012058	-0.10399	-0.71844	-0.73673	-0.27416	-0.91508	-0.3797	-0.70729	-0.41959	0	-0.26047	-0.67641	0	-0.019631	-0.014432	0.03002	-0.25653	0.017067	-0.047124	-0.70487	0.0058775	-0.011123	-0.30322	0	0.017599	-0.54058	0.014018	-0.0028083	0.010564	-0.056758	-0.73112	
Deletion Peak  4 - CN values	3p22.1  	chr3:40578683-42218893(probes 283542:284375)        	chr3:41286244-42218893(probes 284116:284375)        	chr3:41611229-41613346(probes 284246:284247)        	0.093532	   0.096338		Actual Copy Change Given	-0.22638	0.068952	-0.5712	-0.73882	-0.0083379	-0.648	-0.32542	-0.0092666	-0.010508	-0.61026	-0.62461	-0.71151	-0.010094	-0.049919	0.37768	-0.86588	0.21616	0.00089191	-0.019501	0.1492	-0.39128	0.24747	0.011182	-0.79384	-0.66094	0	0.29867	-0.4108	-0.40385	-0.019314	0.007724	-0.0081888	-0.2105	-0.029663	-0.015329	-0.17698	-0.48739	0.0033714	-0.58993	-0.0077482	-0.76024	-0.63211	0.022669	-0.11208	0.0052231	0.00597	-0.74994	-0.20672	-0.67039	-0.02997	-0.54822	0.42511	-0.6098	-0.054845	-0.021977	0.8119	-0.74333	-0.54982	-0.79465	-0.050641	0.029606	-0.034868	0.25183	-0.02442	-0.66654	0.071137	-0.37954	0.011056	
Deletion Peak  5 - CN values	3p14.1  	chr3:53917346-93784545(probes 290110:311515)        	chr3:65334739-66048418(probes 297393:297941)        	chr3:65686268-65686672(probes 297668:297669)        	0.10416	    0.09954		Actual Copy Change Given	-0.22638	0.068952	-0.5712	-0.75303	-0.0083379	-0.648	-0.32542	-0.42981	-0.010508	-0.61026	-0.6378	-0.71151	-0.010094	-0.049919	0.37768	-0.86985	0.18141	0.00089191	-0.73722	0.13676	-0.39128	0.21355	0.011182	-0.79455	-0.68411	0	0.28026	0.03214	-0.40385	-0.019314	0.007724	-0.0081888	-0.20523	-0.029663	-0.015329	-0.17698	-0.48739	0.0033714	-0.6046	-0.020001	-0.82756	-0.63975	-0.85274	-0.3562	-0.71761	0.00597	-0.76047	-0.47934	-0.67039	0.019231	-0.54822	0.3665	-0.6098	-0.04428	-0.021977	0.8119	-0.76137	-0.55922	-0.81606	-0.050641	0.026128	-0.034868	-0.53317	-0.02442	-0.64029	0.082476	-0.37504	0.011056	
Deletion Peak  6 - CN values	4q35.2  	chr4:187133825-188227950(probes 468841:469463)    	chr4:187383866-187480925(probes 469028:469034)    	chr4:186983343-188520112(probes 468769:469637)    	3.7215e-06	 3.7933e-06		Actual Copy Change Given	-0.0013858	-0.35341	-0.57026	-0.78373	-0.0060904	0.0062481	0.015447	0.010789	-0.0032434	-0.030054	0.017116	-0.73069	-0.75115	-0.64405	-0.012915	0.060974	0.27957	-0.40645	0.047103	-0.0094046	-0.32914	-0.0092238	0.016688	-0.38502	-0.64947	0.4582	-1.0698	-0.40351	-0.41025	-0.025278	0.013492	-0.01783	-1.1046	-0.013694	0.020063	-0.17074	-0.44678	0.00023782	0.0055772	0.0282	0.58178	0.049398	-0.14929	-0.35265	-0.70647	-0.13729	-0.11185	-0.21441	0.10376	-0.3031	0.0039341	-0.89323	-0.57299	-0.22552	0.011482	-0.005814	-0.0035142	0.02877	0.64253	-0.13432	-0.68362	-0.021311	-0.50532	-0.013377	-0.70313	0.15598	-0.053446	-1.5	
Deletion Peak  7 - CN values	5q35.3  	chr5:146936521-180915260(probes 549547:570336)    	chr5:179110851-179207921(probes 569767:569800)    	chr5:179143958-179151339(probes 569773:569774)    	0.12679	    0.12766		Actual Copy Change Given	-0.00017525	-0.042924	0.029888	-0.81646	-0.030404	0.56658	-0.013662	-0.301	-0.013953	-0.46465	-0.0083822	-0.82574	0.010006	-0.034603	-0.027738	0.0091304	-0.27173	0.28397	-0.014697	-0.14611	-0.47248	-0.0096806	-0.0096974	0.40296	-0.70849	-0.036194	0.15502	-0.024437	0	-0.018122	-0.010094	-0.008741	-0.47236	-0.0095702	0.41463	0.0282	-0.46102	0.0010121	-0.58651	-0.37917	-0.50332	0.035383	-0.86372	-0.062764	-0.070536	0.062256	-0.74812	0.43024	-0.10263	0.027357	-0.65377	-0.55091	-0.085338	0.0068262	0.0041064	0.019783	0.0039393	-0.0106	-0.017918	-0.11939	-0.68709	-0.013555	-0.53764	-0.00031004	-0.70297	-0.025026	-0.3867	-1.5	
Deletion Peak  8 - CN values	6q26    	chr6:136658259-171115067(probes 646686:666875)    	chr6:163730532-163841899(probes 663528:663616)    	chr6:155719548-165457647(probes 658683:664536)    	0.013595	   0.013595		Actual Copy Change Given	-0.22479	-0.017529	-0.57021	0.071499	-0.0081572	0.008287	-0.31471	0.0063871	0.010703	-0.60219	-0.64335	0.0547	-0.77456	0.53995	0.39488	-0.80573	-0.77431	-0.39488	-0.022058	0.14087	0.45069	0.0070826	0.01222	0.39539	0.066181	-0.0084385	0	-0.41568	-0.0012473	-0.019452	-1.329	-0.010731	-0.38145	-0.009145	-0.40584	-0.13755	0.038528	0.0032326	0.011909	0.0081959	-0.76698	0	-0.82148	-0.10465	-0.0088526	-0.021098	0.017404	-0.33416	-0.21812	-0.33382	-0.56721	-0.4561	-0.044499	0.010746	0.0097394	0.25668	-0.72526	-0.5672	0.010046	-0.12966	-0.66587	-0.030721	-0.52798	-0.056878	0.068665	-0.027562	-0.29497	0.027713	
Deletion Peak  9 - CN values	7q36.2  	chr7:109598162-159138663(probes 722579:748238)    	chr7:153999874-154686956(probes 745599:746119)    	chr7:154381784-154382956(probes 745860:745861)    	0.14999	      0.147		Actual Copy Change Given	0.0026357	-0.018216	-0.012905	-0.82912	-0.0066432	-0.0020336	-0.00071159	-0.0044312	-0.0047079	0.38486	0.00033391	-0.76193	-0.013264	-0.037789	-0.00574	0.025522	-0.29781	-0.0072381	0.72452	-0.13574	-0.4278	0.038347	0.20272	0	-0.35496	-0.027724	0.2839	-0.42353	-0.37718	-0.6008	0.0012481	-0.0072221	-0.26576	-0.0087809	-0.017698	0.084732	0.55616	0.0042048	0.017494	-0.0027352	-0.049336	0.025194	0.036791	0.1649	-0.53864	-0.39238	0.061794	0.09827	0.076279	0.018523	0.0017007	0.41204	-0.045991	0.011377	-0.00010733	-0.40451	0.70031	0.0040073	-0.81355	0.73956	0.0079313	-0.0098185	-0.50017	-0.0069522	-0.60552	-0.00069303	0.20188	-0.72945	
Deletion Peak 10 - CN values	10q23.31	chr10:89313008-90034038(probes 949870:950514)      	chr10:89577212-89611620(probes 950058:950078)      	chr10:89380318-89998943(probes 949916:950483)      	0.0012981	  0.0011828		Actual Copy Change Given	-0.0078863	-0.22392	-0.22625	-0.77823	0.0015255	-0.0096806	-0.0021601	-0.090168	-0.0023553	-0.021844	-0.61524	0.016464	0	-0.030813	-0.0065692	0.016043	0.44884	0.27559	0.020483	-0.12095	-0.40629	-0.29128	0.0031741	-0.78259	0.046741	0.0011093	-0.0077482	-0.41573	-0.37936	3.7457e-05	-0.0081451	0.002054	-1.1053	0	-0.42287	-0.0069195	-0.023854	-0.0023139	-0.58073	-0.013932	0.0074513	0.018104	0.05922	0	0.023759	-0.15694	-0.73784	0.1382	-0.18735	0.013074	-0.0136	-0.41249	-0.034231	-0.098682	-0.0028924	0.034395	0.0036076	-0.0016165	-0.0040103	-0.32716	-0.67807	-0.82871	-0.52788	-0.0089215	-1.4582	-0.0041546	-0.037762	-0.40735	
Deletion Peak 11 - CN values	11q14.2 	chr11:83165646-87846595(probes 1023197:1026009)    	chr11:85950262-85992174(probes 1024752:1024768)    	chr11:85641632-86003044(probes 1024523:1024777)    	0.068567	   0.067207		Actual Copy Change Given	-0.16186	-0.018353	-0.0035344	0.71391	-0.52369	-1.1389	0	0.38419	0.012237	-0.015526	-0.60647	0.70425	-0.74341	-0.62245	-0.26671	-0.82836	0.22576	-0.4945	-0.7226	-0.14438	-0.32368	-0.33017	-0.34137	-0.40577	0.015208	-0.037082	0.35311	0.44206	0.019352	0.0090312	0.0033299	-0.83905	0.23452	-0.88109	-0.011799	0.017023	-0.25376	0	0.53813	-0.0013977	-0.11045	-0.28555	-0.83369	-0.34559	0.01447	0.12865	0.72505	-0.26877	-0.67678	-0.0056437	0.014925	-0.40257	-0.02686	-0.010646	-1.3927	-0.35761	-0.0062286	-0.012335	-0.0026956	0.072593	-0.67297	0.0038854	-0.12382	-0.62467	-0.67949	-0.012498	-0.032723	-0.0024788	
Deletion Peak 12 - CN values	11q25   	chr11:125028108-135006516(probes 1049881:1056073)	chr11:134022024-134097225(probes 1056011:1056043)	chr11:104518766-135006516(probes 1036299:1056073)	2.0491e-07	 2.0455e-07		Actual Copy Change Given	-0.16186	-0.34297	-0.63761	-0.8303	-0.54996	-0.66281	0	-0.43496	-0.41531	-0.61445	-0.63114	-0.79475	-0.78286	-0.64619	-0.26671	-0.91958	0.21745	-0.50511	-0.71951	-0.14438	-0.32368	-0.33669	-0.34137	-0.37051	0.001668	-0.047215	0.54418	-0.47884	-0.86255	-0.61621	0.00083195	-0.85553	0.3161	-0.88898	-0.0095426	0.017023	-0.48641	-0.0017599	-0.57555	-0.75689	-0.092863	-0.2905	-0.87128	-0.34389	-0.0038779	0.11262	-0.74168	-1.0521	-0.6956	-0.0070576	0.014925	-0.86212	-0.02686	-0.010646	-0.71599	-0.39875	-0.017116	-0.026121	-0.0026956	0.34876	-0.67297	-0.87604	-0.12655	-0.65344	-0.70424	-0.012498	-0.1092	-0.0024788	
Deletion Peak 13 - CN values	13q12.12	chr13:1-40185910(probes 1130052:1143233)           	chr13:25451994-25499842(probes 1132968:1132991)    	chr13:1-62943883(probes 1130052:1155412)           	1.0813e-05	  0.0050991		Actual Copy Change Given	-0.1178	-0.32716	-0.042548	-0.010447	-0.53338	-0.27615	0.00011257	-0.4141	-0.012162	-0.4585	-0.20791	-0.77895	-0.018199	-0.019177	-0.013741	0.040081	0.1971	0.011181	-0.024661	-0.17356	-0.13899	0.28422	-0.047868	-0.013864	-0.099938	-0.038034	-0.02228	-0.42898	-0.38795	-0.01409	-0.63339	0.00011215	-0.43506	-0.0033407	-0.005814	-0.03504	-0.48335	-0.0039748	0.0035586	-0.0030475	-0.75399	-0.30416	-0.89632	-0.089839	-0.70325	-0.21047	0.0051359	0.56739	-0.66531	-0.30956	-0.62424	-0.8742	-0.32763	-0.48703	-0.00047257	-0.44591	-0.016567	-0.56968	-0.78626	0.18637	-0.68031	-0.83664	-0.54804	-0.020068	-0.67638	-0.046647	-0.38201	0.002571	
Deletion Peak 14 - CN values	13q13.2 	chr13:1-60590549(probes 1130052:1154053)           	chr13:34386735-34413119(probes 1139249:1139263)    	chr13:1-62943883(probes 1130052:1155412)           	2.5035e-06	   0.002036		Actual Copy Change Given	-0.1178	-0.32716	-0.02421	-0.010447	-0.53338	-0.27615	0.00011257	-0.4141	-0.012162	-0.45198	-0.20791	-0.75665	-0.018199	-0.019177	-0.013741	0.040081	0.1971	-0.35605	-0.024661	-0.13691	-0.13899	0.28422	-0.047868	-0.013864	-0.099938	-0.038034	-0.02228	-0.42898	-0.81524	-0.01409	-0.61643	0.00011215	-0.43506	-0.0033407	-0.005814	-0.03504	-0.48335	-0.0039748	0.0039301	-0.027024	-0.74455	-0.30416	-0.87767	-0.089839	-0.70325	-0.2011	0.0051359	-1.0704	-0.66531	-0.30956	-0.62424	0.010358	-0.32763	-0.48703	-0.00047257	-0.41959	-0.016567	-0.56968	-0.78626	0.37891	-0.68031	0.00027728	0.3928	0	-0.67638	-0.046647	-0.38201	0.002571	
Deletion Peak 15 - CN values	14q32.31	chr14:74511911-103982877(probes 1216888:1235597)  	chr14:102969926-103014332(probes 1235099:1235114)	chr14:102882025-103034506(probes 1235048:1235120)	0.12432	    0.12766		Actual Copy Change Given	0.0013868	0.73777	-0.25213	0.014993	-0.022881	0	0.0016642	-0.0010594	-0.011805	0.54781	-0.00035924	0.01395	0.032281	1.1717	0.0040986	0.036831	-0.054841	-0.48119	-0.7422	0.12759	0.4533	-0.29969	-0.0094214	0.068405	0.053542	0.0013868	0.32179	0.41431	-1.2436	0.0049366	-0.62169	0.0033034	-0.45262	0.0019096	-0.018078	0.065226	0.009038	-0.0025908	0.078532	0.013866	0.017075	0.049114	0.0087496	0.13281	0.0083351	0.084498	1.2479	-0.22244	0.14875	-0.33029	-0.022433	-0.41149	-0.33549	-0.075211	-0.011116	-0.0042929	0.0047751	0.0057384	-0.011674	-0.18873	0.023207	0.74955	-0.22515	0.034926	-0.038413	0.0090312	-0.15276	0.049474	
Deletion Peak 16 - CN values	16q24.2 	chr16:1-90354753(probes 1280751:1321565)             	chr16:87333133-90354753(probes 1321027:1321565)    	chr16:86347359-90354753(probes 1320050:1321565)    	0.11524	    0.11631		Actual Copy Change Given	-0.017391	0.18707	-0.58098	-0.019658	-0.0016629	-0.028491	-0.020275	-0.0041546	-0.018028	-0.17704	-0.011693	0.61231	-0.0027279	0.50325	0.36617	-0.030913	-0.2913	-0.39707	0.02525	0.14935	0.04265	-0.0092666	-0.0055543	-0.31118	-0.010055	0.0027745	-0.032041	-0.46568	-0.83465	0.04259	-0.62224	-0.87355	-0.44964	0.036918	-0.027535	0.0066653	0.0074688	-0.0019406	-0.00088048	0.0041632	0.0502	0.020763	0	0.060396	0	0.35974	-0.012679	-0.49277	-0.28797	-0.035312	-0.064364	-0.41602	-0.10147	0.027497	-0.027044	0.043251	-0.017391	-0.025437	-0.0073971	-0.18194	-0.0073192	0.0020805	0.61045	-0.012746	0	-0.068797	0.17893	-0.02582	
Deletion Peak 17 - CN values	18q21.2 	chr18:48255169-51678342(probes 1385007:1387292)    	chr18:48552482-48616860(probes 1385196:1385321)    	chr18:48582210-48582416(probes 1385259:1385260)    	0.018499	   0.018184		Actual Copy Change Given	0.054091	0.012097	0.049824	0.076962	0.0058669	0.0026357	0.0013868	-0.00374	-0.0077482	-0.0050448	0.0071394	0.062977	0.0033299	-0.0299	-0.0031119	0.004617	-0.7456	-0.37677	0.022304	0.14637	-0.38027	-0.30075	0.013475	-0.3512	-0.274	-0.0098185	-0.34171	-0.46206	0.046133	-0.57279	-0.61949	-1.3018	0.0054139	0.010826	-0.010925	-0.17664	-0.44148	-0.0014829	-0.0051715	0.003705	-0.02484	-0.28845	-0.80901	-0.10933	-0.70603	-0.1567	-0.75849	-0.21515	0.66863	-0.3233	-0.003288	-0.44172	0.034527	0.014748	0.6481	-0.013953	0.00458	-0.0068531	-0.0078114	0.0052749	0.01447	-0.77211	-0.55432	1.1246	0.013492	0.056655	0.096816	-0.015806	
Deletion Peak 18 - CN values	19p13.3 	chr19:1-55824633(probes 1401256:1423645)             	chr19:1-1537245(probes 1401256:1401494)               	chr19:1-1726232(probes 1401256:1401531)               	0.070634	   0.070634		Actual Copy Change Given	-0.017667	0.028895	-0.30579	-0.20663	0.40794	-0.67288	-0.041838	-0.070001	0.34518	-0.043308	-0.07115	-0.16685	-0.0051227	-0.12121	-0.024862	-0.32037	-0.21824	-0.44702	-0.73862	0.10293	-0.52605	-0.23753	-0.03873	-0.35729	-0.69285	0.00055459	0.23365	-0.032178	0.021603	-0.088904	-0.019928	-0.031112	0.13179	-0.010495	0.38287	-0.029584	-0.083193	-0.010062	-0.04518	-0.0064474	-0.62906	-0.6095	-0.17576	0.060597	-0.010646	-0.057654	-0.99286	0.048335	-0.6983	-0.35795	-0.63785	0.27513	-0.23693	-0.28168	0.61074	-0.37211	-0.064911	-0.045812	-0.0291	-0.13368	-0.016154	-0.036538	-0.55374	-0.031756	-0.084395	0.027579	-0.35631	-0.051496	
Deletion Peak 19 - CN values	21q21.1 	chr21:1-23095995(probes 1462519:1467479)           	chr21:22104880-22177088(probes 1466770:1466823)    	chr21:21419613-22348249(probes 1466339:1466956)    	0.022633	   0.021885		Actual Copy Change Given	-0.010094	-0.20535	-0.29367	-0.80345	0	0.010146	0.00055459	-0.056473	0.014051	0.011051	0.017427	-0.0067431	0.025812	0.5102	0.007172	0.0028115	-0.23826	0.026575	0.016985	0.34827	0.64907	-0.18956	0.15142	0.038657	0.049438	0.49597	-0.32867	-0.90442	0.061794	-0.012576	0.016425	0.012768	-0.42276	0.0087363	0.39662	-0.028218	-0.89233	0.0043437	0.014001	-0.59273	-0.017027	0.043865	-1.5	-0.048478	-0.018353	0.020343	-0.012162	-0.26552	0.1252	-0.32681	-0.047901	0.32874	0.00082316	-0.26949	-0.0080809	0.41647	0.018477	0.023333	-0.0010336	-0.18207	0.67567	-0.77568	0.50047	0.005798	0.055373	-0.0012473	-0.36771	-0.0039424	
