
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.32.3479/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.32.3479/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/COADREAD/1592195/1.GDAC_mergedClustering.Finished/COADREAD.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/COADREAD/1551751/1.GDAC_clinicalDataPicker.Finished/COADREAD.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=1", "-MF=ALL", "-oT=", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  

nPatients in clinical file=591, in cluster file=585, common to both=585
[1]   7 585
[1] "MRNA_CNMF"
[1] 3
 1  2  3  4 
63 48 73 40 
 1  2  3  4 
63 48 73 40 
[1] "MRNA_CHIERARCHICAL"
[1] 3
  1   2   3 
 47  64 113 
  1   2   3 
 47  64 113 
[1] "METHLYATION_CNMF"
[1] 3
  1   2   3 
142  97 110 
  1   2   3 
142  97 110 
[1] "MRNASEQ_CNMF"
[1] 3
 1  2  3  4 
17 17 27 22 
 1  2  3  4 
17 17 27 22 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
 1  2  3  4 
17 16 28 22 
 1  2  3  4 
17 16 28 22 
[1] "MIRSEQ_CNMF"
[1] 3
  1   2   3 
 54 114  87 
  1   2   3 
 54 114  87 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
  1   2 
 80 175 
  1   2 
 80 175 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "HISTOLOGICALTYPE"                      
[11] "PATHOLOGICSPREAD(PT)"                  
[12] "PATHOLOGICSPREAD(PN)"                  
[13] "PATHOLOGICSPREAD(M)"                   
[14] "RADIATIONS.RADIATION.REGIMENINDICATION"
[15] "NEOADJUVANTTHERAPY"                    
[16] "BATCHNUMBER"                           

Input Data has 16 rows and 585 columns.

[1] "Batch" "16"   
[1] "Last Follow UP"
TCGA-A6-2670 TCGA-A6-2671 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2675 TCGA-A6-2676 
         423          648          503          523          515          447 
TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2679 TCGA-A6-2680 TCGA-A6-2681 TCGA-A6-2682 
         541          437          595          522          552          424 
TCGA-A6-2683 TCGA-A6-2684 TCGA-A6-2685 TCGA-A6-2686 TCGA-A6-3807 TCGA-A6-3808 
         472          387          464          488          332          278 
TCGA-A6-3809 TCGA-A6-3810 TCGA-A6-4105 TCGA-A6-4107 TCGA-A6-5656 TCGA-A6-5657 
         313          246          441          231          462          367 
TCGA-A6-5659 TCGA-A6-5660 TCGA-A6-5661 TCGA-A6-5662 TCGA-A6-5664 TCGA-A6-5665 
         286          342          306          297          362          286 
TCGA-A6-5666 TCGA-A6-5667 TCGA-A6-6137 TCGA-A6-6138 TCGA-A6-6140 TCGA-A6-6141 
         244          320          195          181          124          129 
TCGA-A6-6142 TCGA-A6-6648 TCGA-A6-6649 TCGA-A6-6650 TCGA-A6-6651 TCGA-A6-6652 
         133          253          146          172          248          134 
TCGA-A6-6653 TCGA-A6-6654 TCGA-A6-6780 TCGA-A6-6781 TCGA-A6-6782 TCGA-AA-3488 
          90          177           86          158          164           91 
TCGA-AA-3489 TCGA-AA-3492 TCGA-AA-3494 TCGA-AA-3495 TCGA-AA-3496 TCGA-AA-3502 
          31           NA           31           31           31           31 
TCGA-AA-3506 TCGA-AA-3509 TCGA-AA-3510 TCGA-AA-3511 TCGA-AA-3514 TCGA-AA-3516 
          NA           NA           31           NA           NA           NA 
TCGA-AA-3517 TCGA-AA-3518 TCGA-AA-3519 TCGA-AA-3520 TCGA-AA-3521 TCGA-AA-3522 
          NA           31           NA           NA           NA           NA 
TCGA-AA-3524 TCGA-AA-3525 TCGA-AA-3526 TCGA-AA-3527 TCGA-AA-3529 TCGA-AA-3530 
          NA           NA           30           NA           NA           NA 
TCGA-AA-3531 TCGA-AA-3532 TCGA-AA-3534 TCGA-AA-3538 TCGA-AA-3542 TCGA-AA-3543 
          NA           NA           NA           NA           NA           NA 
TCGA-AA-3544 TCGA-AA-3548 TCGA-AA-3549 TCGA-AA-3552 TCGA-AA-3553 TCGA-AA-3554 
          NA           NA           NA           NA           NA           NA 
TCGA-AA-3555 TCGA-AA-3556 TCGA-AA-3558 TCGA-AA-3560 TCGA-AA-3561 TCGA-AA-3562 
          30           NA           NA           NA           NA           31 
TCGA-AA-3655 TCGA-AA-3660 TCGA-AA-3662 TCGA-AA-3663 TCGA-AA-3664 TCGA-AA-3666 
          NA           31           NA           31           NA           31 
TCGA-AA-3667 TCGA-AA-3672 TCGA-AA-3673 TCGA-AA-3675 TCGA-AA-3678 TCGA-AA-3679 
          NA           NA           NA           31           NA           30 
TCGA-AA-3680 TCGA-AA-3681 TCGA-AA-3684 TCGA-AA-3685 TCGA-AA-3688 TCGA-AA-3692 
          NA           NA           NA           30           NA           NA 
TCGA-AA-3693 TCGA-AA-3695 TCGA-AA-3696 TCGA-AA-3697 TCGA-AA-3710 TCGA-AA-3712 
          NA           NA           NA           29           31           NA 
TCGA-AA-3713 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3812 TCGA-AA-3814 TCGA-AA-3815 
          29           30           30           NA           NA           NA 
TCGA-AA-3818 TCGA-AA-3819 TCGA-AA-3821 TCGA-AA-3831 TCGA-AA-3833 TCGA-AA-3837 
          NA           NA           NA           NA           NA           31 
TCGA-AA-3841 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3845 TCGA-AA-3846 TCGA-AA-3848 
          NA           31           28           NA           30           30 
TCGA-AA-3850 TCGA-AA-3851 TCGA-AA-3852 TCGA-AA-3854 TCGA-AA-3855 TCGA-AA-3856 
          NA           NA           NA           31           NA           NA 
TCGA-AA-3858 TCGA-AA-3860 TCGA-AA-3861 TCGA-AA-3862 TCGA-AA-3864 TCGA-AA-3866 
          NA           NA           NA           31           NA           NA 
TCGA-AA-3867 TCGA-AA-3869 TCGA-AA-3870 TCGA-AA-3872 TCGA-AA-3875 TCGA-AA-3877 
          NA           NA           NA           NA           NA           30 
TCGA-AA-3930 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3950 
          NA           30           31           30           30           31 
TCGA-AA-3952 TCGA-AA-3955 TCGA-AA-3956 TCGA-AA-3966 TCGA-AA-3968 TCGA-AA-3970 
          31           NA           NA           31           NA           NA 
TCGA-AA-3971 TCGA-AA-3972 TCGA-AA-3973 TCGA-AA-3975 TCGA-AA-3976 TCGA-AA-3977 
          NA           NA           NA           30           NA           31 
TCGA-AA-3979 TCGA-AA-3980 TCGA-AA-3982 TCGA-AA-3984 TCGA-AA-3986 TCGA-AA-3989 
          NA           NA           NA           NA           30           NA 
TCGA-AA-3994 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
          NA          424          548          578          913         1035 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
         548          548          517          122          822          822 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 
          30          517          456          669          638          457 
TCGA-AA-A01C TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
         457           30          396          365          365          396 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
        1158           31         1065           31         1005         1065 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A022 TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02E 
         791          638           NA         1188         1580           89 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02K TCGA-AA-A02O TCGA-AA-A02R 
        1215           61          153          425           28          670 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AD-5900 TCGA-AD-6548 
        1246         1215          548         1245            2            3 
TCGA-AD-6888 TCGA-AD-6889 TCGA-AD-6890 TCGA-AD-6895 TCGA-AD-6899 TCGA-AD-6901 
         128         1719           24           22           47           31 
TCGA-AD-6963 TCGA-AD-6964 TCGA-AD-6965 TCGA-AM-5820 TCGA-AM-5821 TCGA-AU-3779 
           3           30            6           14           28           NA 
TCGA-AU-6004 TCGA-AY-4070 TCGA-AY-4071 TCGA-AY-5543 TCGA-AY-6196 TCGA-AY-6197 
          40          496           29          230            6          112 
TCGA-AY-6386 TCGA-AZ-4308 TCGA-AZ-4313 TCGA-AZ-4315 TCGA-AZ-4323 TCGA-AZ-4614 
         162         1714          957         1334           NA          172 
TCGA-AZ-4615 TCGA-AZ-4616 TCGA-AZ-4681 TCGA-AZ-4682 TCGA-AZ-4684 TCGA-AZ-5403 
         505           NA         2180          680         1705           NA 
TCGA-AZ-5407 TCGA-AZ-6598 TCGA-AZ-6599 TCGA-AZ-6600 TCGA-AZ-6601 TCGA-AZ-6603 
        1395           NA           NA           NA           NA           NA 
TCGA-AZ-6605 TCGA-AZ-6606 TCGA-AZ-6607 TCGA-AZ-6608 TCGA-CA-5254 TCGA-CA-5255 
          NA           NA           NA           NA            5            2 
TCGA-CA-5256 TCGA-CA-5796 TCGA-CA-5797 TCGA-CA-6715 TCGA-CA-6716 TCGA-CA-6717 
          NA           12            8            2            8           10 
TCGA-CA-6718 TCGA-CA-6719 TCGA-CK-4947 TCGA-CK-4948 TCGA-CK-4950 TCGA-CK-4951 
           3           41          533         3116         1226         1491 
TCGA-CK-4952 TCGA-CK-5912 TCGA-CK-5913 TCGA-CK-5914 TCGA-CK-5915 TCGA-CK-5916 
         474         1461          853          669           NA           NA 
TCGA-CK-6746 TCGA-CK-6747 TCGA-CK-6748 TCGA-CK-6751 TCGA-CM-4743 TCGA-CM-4744 
          NA           89           61         3134          184          214 
TCGA-CM-4746 TCGA-CM-4747 TCGA-CM-4748 TCGA-CM-4750 TCGA-CM-4751 TCGA-CM-4752 
         699          244          214          244          607          123 
TCGA-CM-5341 TCGA-CM-5344 TCGA-CM-5348 TCGA-CM-5349 TCGA-CM-5860 TCGA-CM-5861 
         183          304          393          335          304          335 
TCGA-CM-5862 TCGA-CM-5863 TCGA-CM-5864 TCGA-CM-5868 TCGA-CM-6161 TCGA-CM-6162 
          NA          304           61          304          212          212 
TCGA-CM-6163 TCGA-CM-6164 TCGA-CM-6165 TCGA-CM-6166 TCGA-CM-6167 TCGA-CM-6168 
          90          487          212          424          122          181 
TCGA-CM-6169 TCGA-CM-6170 TCGA-CM-6171 TCGA-CM-6172 TCGA-CM-6674 TCGA-CM-6675 
         243          242          181          211          149          152 
TCGA-CM-6676 TCGA-CM-6677 TCGA-CM-6678 TCGA-CM-6679 TCGA-CM-6680 TCGA-D5-5537 
         152          152          122          122           91          456 
TCGA-D5-5538 TCGA-D5-5539 TCGA-D5-5540 TCGA-D5-5541 TCGA-D5-6529 TCGA-D5-6530 
         204           30          198          202          260          271 
TCGA-D5-6531 TCGA-D5-6532 TCGA-D5-6533 TCGA-D5-6534 TCGA-D5-6535 TCGA-D5-6536 
          17          107           40          241           10          287 
TCGA-D5-6537 TCGA-D5-6538 TCGA-D5-6539 TCGA-D5-6540 TCGA-D5-6541 TCGA-D5-6898 
         136          246          144          186          108           45 
TCGA-D5-6920 TCGA-D5-6922 TCGA-D5-6923 TCGA-D5-6924 TCGA-D5-6926 TCGA-D5-6927 
         111          133           42           88           95           67 
TCGA-D5-6928 TCGA-D5-6929 TCGA-D5-6930 TCGA-D5-6931 TCGA-D5-6932 TCGA-D5-7000 
          20          145           45           43           19           41 
TCGA-DM-A0X9 TCGA-DM-A0XD TCGA-DM-A0XF TCGA-DM-A1D0 TCGA-DM-A1D4 TCGA-DM-A1D6 
        3429          743         1162         3621         2821         1518 
TCGA-DM-A1D7 TCGA-DM-A1D8 TCGA-DM-A1D9 TCGA-DM-A1DA TCGA-DM-A1DB TCGA-DM-A1HA 
          NA          383         3927          227         1348         3927 
TCGA-DM-A1HB TCGA-DM-A280 TCGA-DM-A282 TCGA-DM-A285 TCGA-DM-A288 TCGA-DM-A28A 
        3774          235         4122          185          426          805 
TCGA-DM-A28C TCGA-DM-A28E TCGA-DM-A28F TCGA-DM-A28G TCGA-DM-A28H TCGA-DM-A28K 
        2475         3529         1094         1849         3422         2835 
TCGA-DM-A28M TCGA-F4-6459 TCGA-F4-6460 TCGA-F4-6461 TCGA-F4-6463 TCGA-F4-6569 
        2774           NA           NA           NA           NA           NA 
TCGA-F4-6570 TCGA-F4-6703 TCGA-F4-6704 TCGA-F4-6805 TCGA-F4-6806 TCGA-F4-6807 
          NA           56           46           16           20           16 
TCGA-F4-6808 TCGA-F4-6809 TCGA-F4-6854 TCGA-F4-6855 TCGA-F4-6856 TCGA-G4-6293 
          14           38           16           42           20         3203 
TCGA-G4-6294 TCGA-G4-6295 TCGA-G4-6297 TCGA-G4-6298 TCGA-G4-6299 TCGA-G4-6302 
         858          254         2288           NA         2077         1309 
TCGA-G4-6303 TCGA-G4-6304 TCGA-G4-6306 TCGA-G4-6307 TCGA-G4-6309 TCGA-G4-6310 
        1882         1631         1358         1485         1386         1204 
TCGA-G4-6311 TCGA-G4-6314 TCGA-G4-6315 TCGA-G4-6317 TCGA-G4-6320 TCGA-G4-6321 
        1112         1031          937          893          678          571 
TCGA-G4-6322 TCGA-G4-6323 TCGA-G4-6586 TCGA-G4-6588 TCGA-G4-6625 TCGA-G4-6626 
         546          201          741          644         2672           NA 
TCGA-G4-6627 TCGA-G4-6628 TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 
        1434         1611          594          482          358          323 
TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 
         412          581          387          536          316          441 
TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3574 TCGA-AG-3575 TCGA-AG-3578 
         231          193          223           NA           NA           NA 
TCGA-AG-3580 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3584 TCGA-AG-3586 
          NA           31           31           61           NA           NA 
TCGA-AG-3587 TCGA-AG-3591 TCGA-AG-3592 TCGA-AG-3593 TCGA-AG-3594 TCGA-AG-3598 
          31           NA           NA           NA           NA           NA 
TCGA-AG-3599 TCGA-AG-3600 TCGA-AG-3601 TCGA-AG-3602 TCGA-AG-3605 TCGA-AG-3608 
          30           NA           NA           NA           NA           NA 
TCGA-AG-3609 TCGA-AG-3611 TCGA-AG-3612 TCGA-AG-3725 TCGA-AG-3726 TCGA-AG-3727 
          NA           NA           NA           NA           31           29 
TCGA-AG-3728 TCGA-AG-3731 TCGA-AG-3732 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3881 
          NA           31           NA           30           30           NA 
TCGA-AG-3882 TCGA-AG-3883 TCGA-AG-3885 TCGA-AG-3887 TCGA-AG-3890 TCGA-AG-3892 
          NA           NA           NA           28           NA           31 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3898 TCGA-AG-3901 TCGA-AG-3902 
          30           30           NA           NA           NA           NA 
TCGA-AG-3909 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4005 TCGA-AG-4007 TCGA-AG-4008 
          NA           31           31           NA           31           31 
TCGA-AG-4015 TCGA-AG-4021 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
          NA           NA           30          637          423          183 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
         789          700          518          484          396           31 
TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
          31          365          365         2130         1946          334 
TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
        1581         1519           59         1184         1884         1246 
TCGA-AG-A032 TCGA-AG-A036 TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6549 TCGA-AH-6643 
        1156         2192           15           44            6           21 
TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 
          22          140           55          310          183          183 
TCGA-CI-6621 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 
          NA          211          285          143          425         1825 
TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 
         243          334          335          304          153          273 
TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 
         224          212          849          212          608          180 
TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD 
         121          152            8         3635         1257         1741 
TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 
        3683          734         1566          991           15           73 
TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 
         232            5           66          250           14          121 
TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 
          20          210          216          187          108          121 
TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6464 
          83          159          237           84           62           NA 
TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 
         103           26           66           12           31           20 
TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 
          21           16           33           23           14           NA 
TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
        1451           NA          636 
Variable 1:'AGE':	nDistinctValues=59,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=58,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=270,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=14,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=139,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'HISTOLOGICAL.TYPE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'PATHOLOGY.T':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGY.N':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'PATHOLOGICSPREAD(M)':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'NEOADJUVANT.THERAPY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'BATCH.NUMBER':	nDistinctValues=26,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                                   
[2] "PRIMARY.SITE.OF.DISEASE"               
[3] "GENDER"                                
[4] "HISTOLOGICAL.TYPE"                     
[5] "PATHOLOGY.T"                           
[6] "PATHOLOGY.N"                           
[7] "PATHOLOGICSPREAD(M)"                   
[8] "RADIATIONS.RADIATION.REGIMENINDICATION"
[9] "NEOADJUVANT.THERAPY"                   
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "5"          
[1] "PATHOLOGY.N" "6"          
Output Data has 585 columns, 1 survival variables, and 9 non-survival variables.
AGE, nv=59, binary=FALSE, numeric=TRUE
PRIMARY.SITE.OF.DISEASE, nv=2, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=4, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=5, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T0  T1  T2  T3  T4 
  1  19 101 400  60 
[1] "table(vv)"
vv
T0+T1    T2    T3    T4 
   20   101   400    60 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
 T0  T1  T2  T3  T4 
  1  19 101 400  60 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


T0+T1    T2    T3    T4 
   20   101   400    60 
PATHOLOGY.N, nv=3, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2 
335 140 105 
[1] "table(vv)"
vv
 N0  N1  N2 
335 140 105 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
 N0  N1  N2 
335 140 105 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


 N0  N1  N2 
335 140 105 
PATHOLOGICSPREAD(M), nv=5, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NEOADJUVANT.THERAPY, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = MRNA_CNMF
D1V1, survival
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
  [7] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype4"
 [13] "subtype4" "subtype4" "subtype3" "subtype1" "subtype4" "subtype3"
 [19] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [25] "subtype2" "subtype3" "subtype3" "subtype3" "subtype4" "subtype3"
 [31] "subtype2" "subtype3" "subtype4" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype4"
 [43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype4" "subtype4"
 [49] "subtype1" "subtype4" "subtype1" "subtype1" "subtype2" "subtype4"
 [55] "subtype3" "subtype1" "subtype4" "subtype1" "subtype1" "subtype2"
 [61] "subtype1" "subtype4" "subtype4" "subtype1" "subtype4" "subtype4"
 [67] "subtype4" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [73] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [79] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [85] "subtype3" "subtype1" "subtype3" "subtype2" "subtype4" "subtype4"
 [91] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype4" "subtype4" "subtype3" "subtype4" "subtype3" "subtype3"
[103] "subtype1" "subtype4" "subtype1" "subtype1" "subtype3" "subtype1"
[109] "subtype1" "subtype3" "subtype1" "subtype1" "subtype4" "subtype1"
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
  [7] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype4"
 [13] "subtype4" "subtype4" "subtype3" "subtype1" "subtype4" "subtype3"
 [19] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [25] "subtype2" "subtype3" "subtype3" "subtype3" "subtype4" "subtype3"
 [31] "subtype2" "subtype3" "subtype4" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype4"
 [43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype4" "subtype4"
 [49] "subtype1" "subtype4" "subtype1" "subtype1" "subtype2" "subtype4"
 [55] "subtype3" "subtype1" "subtype4" "subtype1" "subtype1" "subtype2"
 [61] "subtype1" "subtype4" "subtype4" "subtype1" "subtype4" "subtype4"
 [67] "subtype4" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [73] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [79] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [85] "subtype3" "subtype1" "subtype3" "subtype2" "subtype4" "subtype4"
 [91] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype4" "subtype4" "subtype3" "subtype4" "subtype3" "subtype3"
[103] "subtype1" "subtype4" "subtype1" "subtype1" "subtype3" "subtype1"
[109] "subtype1" "subtype3" "subtype1" "subtype1" "subtype4" "subtype1"
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
  [7] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype4"
 [13] "subtype4" "subtype4" "subtype3" "subtype1" "subtype4" "subtype3"
 [19] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [25] "subtype2" "subtype3" "subtype3" "subtype3" "subtype4" "subtype3"
 [31] "subtype2" "subtype3" "subtype4" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype4"
 [43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype4" "subtype4"
 [49] "subtype1" "subtype4" "subtype1" "subtype1" "subtype2" "subtype4"
 [55] "subtype3" "subtype1" "subtype4" "subtype1" "subtype1" "subtype2"
 [61] "subtype1" "subtype4" "subtype4" "subtype1" "subtype4" "subtype4"
 [67] "subtype4" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [73] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [79] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [85] "subtype3" "subtype1" "subtype3" "subtype2" "subtype4" "subtype4"
 [91] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype4" "subtype4" "subtype3" "subtype4" "subtype3" "subtype3"
[103] "subtype1" "subtype4" "subtype1" "subtype1" "subtype3" "subtype1"
[109] "subtype1" "subtype3" "subtype1" "subtype1" "subtype4" "subtype1"
D1V2, continuous
D1V3, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   37   26
  subtype2   41    7
  subtype3   46   25
  subtype4   30   10
        clus
vv       subtype1 subtype2 subtype3 subtype4
  COLON        37       41       46       30
  RECTUM       26        7       25       10
D1V4, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   30   33
  subtype2   19   29
  subtype3   42   31
  subtype4   26   14
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       33       29       31       14
  MALE         30       19       42       26
D1V5, multiclass
D1V6, multiclass
D1V7, multiclass
D1V8, multiclass
D1V9, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   63    0
  subtype2   47    1
  subtype3   73    0
  subtype4   40    0
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         0        1        0        0
  YES       63       47       73       40
D1V10, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   60    3
  subtype2   44    4
  subtype3   72    1
  subtype4   40    0
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         3        4        1        0
  YES       60       44       72       40

Clustering(2) Variable = MRNA_CHIERARCHICAL
D2V1, survival
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
  [7] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [13] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [25] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [31] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [37] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [49] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [55] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [73] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [79] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
 [85] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [91] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [97] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[103] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
  [7] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [13] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [25] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [31] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [37] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [49] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [55] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [73] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [79] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
 [85] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [91] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [97] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[103] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
  [7] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [13] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [25] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [31] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [37] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [49] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [55] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [73] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [79] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
 [85] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [91] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [97] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[103] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
D2V2, continuous
D2V3, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   34   12
  subtype2   51   13
  subtype3   69   43
        clus
vv       subtype1 subtype2 subtype3
  COLON        34       51       69
  RECTUM       12       13       43
D2V4, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   25   22
  subtype2   31   33
  subtype3   61   52
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       22       33       52
  MALE         25       31       61
D2V5, multiclass
D2V6, multiclass
D2V7, multiclass
D2V8, multiclass
D2V9, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   47    0
  subtype2   63    1
  subtype3  113    0
     clus
vv    subtype1 subtype2 subtype3
  NO         0        1        0
  YES       47       63      113
D2V10, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   45    2
  subtype2   61    3
  subtype3  110    3
     clus
vv    subtype1 subtype2 subtype3
  NO         2        3        3
  YES       45       61      110

Clustering(3) Variable = METHLYATION_CNMF
D3V1, survival
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
  [7] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [13] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
 [19] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [25] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
 [31] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [37] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [49] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [55] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [61] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
 [67] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [73] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
 [85] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
 [91] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[103] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[109] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[115] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[121] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[127] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[133] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[139] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[145] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[151] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[157] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[163] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[169] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[175] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[181] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[187] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[193] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[199] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[205] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[211] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[217] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[223] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[229] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[235] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[241] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[247] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[253] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[259] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[265] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[271] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[277] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[283] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[289] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[295] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[301] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[307] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[313] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[319] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
  [7] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [13] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
 [19] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [25] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
 [31] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [37] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [49] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [55] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [61] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
 [67] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [73] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
 [85] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
 [91] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[103] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[109] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[115] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[121] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[127] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[133] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[139] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[145] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[151] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[157] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[163] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[169] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[175] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[181] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[187] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[193] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[199] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[205] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[211] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[217] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[223] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[229] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[235] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[241] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[247] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[253] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[259] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[265] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[271] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[277] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[283] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[289] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[295] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[301] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[307] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[313] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[319] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
  [7] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [13] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
 [19] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [25] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
 [31] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [37] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [49] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [55] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [61] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
 [67] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [73] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
 [85] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
 [91] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[103] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[109] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[115] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[121] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[127] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[133] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[139] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[145] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[151] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[157] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[163] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[169] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[175] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[181] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[187] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[193] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[199] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[205] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[211] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[217] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[223] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[229] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[235] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[241] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[247] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[253] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[259] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[265] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[271] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[277] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[283] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[289] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[295] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[301] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[307] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[313] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[319] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
D3V2, continuous
D3V3, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   92   50
  subtype2   66   29
  subtype3   96   14
        clus
vv       subtype1 subtype2 subtype3
  COLON        92       66       96
  RECTUM       50       29       14
D3V4, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   81   61
  subtype2   59   38
  subtype3   53   57
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       61       38       57
  MALE         81       59       53
D3V5, multiclass
D3V6, multiclass
D3V7, multiclass
D3V8, multiclass
D3V9, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  138    4
  subtype2   93    4
  subtype3  110    0
     clus
vv    subtype1 subtype2 subtype3
  NO         4        4        0
  YES      138       93      110
D3V10, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  113   29
  subtype2   73   24
  subtype3   89   21
     clus
vv    subtype1 subtype2 subtype3
  NO        29       24       21
  YES      113       73       89

Clustering(4) Variable = MRNASEQ_CNMF
D4V1, survival
 [1] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
 [7] "subtype1" "subtype2" "subtype4" "subtype3" "subtype4" "subtype3"
[13] "subtype4" "subtype4" "subtype2" "subtype3" "subtype3" "subtype2"
[19] "subtype4" "subtype1" "subtype1" "subtype4" "subtype2" "subtype3"
[25] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype4"
[31] "subtype3" "subtype4" "subtype2" "subtype3" "subtype4" "subtype4"
[37] "subtype1" "subtype3" "subtype4" "subtype4" "subtype4" "subtype4"
[43] "subtype3" "subtype3" "subtype4" "subtype4"
 [1] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
 [7] "subtype1" "subtype2" "subtype4" "subtype3" "subtype4" "subtype3"
[13] "subtype4" "subtype4" "subtype2" "subtype3" "subtype3" "subtype2"
[19] "subtype4" "subtype1" "subtype1" "subtype4" "subtype2" "subtype3"
[25] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype4"
[31] "subtype3" "subtype4" "subtype2" "subtype3" "subtype4" "subtype4"
[37] "subtype1" "subtype3" "subtype4" "subtype4" "subtype4" "subtype4"
[43] "subtype3" "subtype3" "subtype4" "subtype4"
 [1] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
 [7] "subtype1" "subtype2" "subtype4" "subtype3" "subtype4" "subtype3"
[13] "subtype4" "subtype4" "subtype2" "subtype3" "subtype3" "subtype2"
[19] "subtype4" "subtype1" "subtype1" "subtype4" "subtype2" "subtype3"
[25] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype4"
[31] "subtype3" "subtype4" "subtype2" "subtype3" "subtype4" "subtype4"
[37] "subtype1" "subtype3" "subtype4" "subtype4" "subtype4" "subtype4"
[43] "subtype3" "subtype3" "subtype4" "subtype4"
D4V2, continuous
D4V3, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    3   14
  subtype2    3   13
  subtype3    5   22
  subtype4    0   22
        clus
vv       subtype1 subtype2 subtype3 subtype4
  COLON         3        3        5        0
  RECTUM       14       13       22       22
D4V4, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    9    8
  subtype2    8    9
  subtype3   11   16
  subtype4   11   11
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE        9        8       11       11
  MALE          8        9       16       11
D4V5, multiclass
D4V6, multiclass
D4V7, multiclass
D4V8, multiclass
D4V9, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   16    1
  subtype2   17    0
  subtype3   27    0
  subtype4   22    0
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         1        0        0        0
  YES       16       17       27       22
D4V10, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   16    1
  subtype2   17    0
  subtype3   27    0
  subtype4   22    0
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         1        0        0        0
  YES       16       17       27       22

Clustering(5) Variable = MRNASEQ_CHIERARCHICAL
D5V1, survival
 [1] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
 [7] "subtype4" "subtype2" "subtype4" "subtype1" "subtype4" "subtype3"
[13] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[19] "subtype1" "subtype4" "subtype4" "subtype4" "subtype4" "subtype3"
[25] "subtype3" "subtype3" "subtype4" "subtype1" "subtype2" "subtype1"
[31] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype4"
[37] "subtype4" "subtype3" "subtype2" "subtype2" "subtype4" "subtype1"
[43] "subtype3" "subtype3" "subtype2" "subtype4"
 [1] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
 [7] "subtype4" "subtype2" "subtype4" "subtype1" "subtype4" "subtype3"
[13] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[19] "subtype1" "subtype4" "subtype4" "subtype4" "subtype4" "subtype3"
[25] "subtype3" "subtype3" "subtype4" "subtype1" "subtype2" "subtype1"
[31] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype4"
[37] "subtype4" "subtype3" "subtype2" "subtype2" "subtype4" "subtype1"
[43] "subtype3" "subtype3" "subtype2" "subtype4"
 [1] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
 [7] "subtype4" "subtype2" "subtype4" "subtype1" "subtype4" "subtype3"
[13] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[19] "subtype1" "subtype4" "subtype4" "subtype4" "subtype4" "subtype3"
[25] "subtype3" "subtype3" "subtype4" "subtype1" "subtype2" "subtype1"
[31] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype4"
[37] "subtype4" "subtype3" "subtype2" "subtype2" "subtype4" "subtype1"
[43] "subtype3" "subtype3" "subtype2" "subtype4"
D5V2, continuous
D5V3, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1   15
  subtype2    1   15
  subtype3    7   21
  subtype4    2   20
        clus
vv       subtype1 subtype2 subtype3 subtype4
  COLON         1        1        7        2
  RECTUM       15       15       21       20
D5V4, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    8    9
  subtype2    8    8
  subtype3   14   14
  subtype4    9   13
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE        8        8       14        9
  MALE          9        8       14       13
D5V5, multiclass
D5V6, multiclass
D5V7, multiclass
D5V8, multiclass
D5V9, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   17    0
  subtype2   16    0
  subtype3   27    1
  subtype4   22    0
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         0        0        1        0
  YES       17       16       27       22
D5V10, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   17    0
  subtype2   16    0
  subtype3   27    1
  subtype4   22    0
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         0        0        1        0
  YES       17       16       27       22

Clustering(6) Variable = MIRSEQ_CNMF
D6V1, survival
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
  [7] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [19] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [37] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [49] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [55] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [67] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [73] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [79] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [91] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[103] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[109] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[121] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[127] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype2" "subtype2" "subtype2"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
  [7] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [19] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [37] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [49] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [55] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [67] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [73] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [79] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [91] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[103] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[109] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[121] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[127] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype2" "subtype2" "subtype2"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
  [7] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [19] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [37] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [49] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [55] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [67] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [73] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [79] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [91] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[103] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[109] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[121] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[127] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype2" "subtype2" "subtype2"
D6V2, continuous
D6V3, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   40   13
  subtype2   83   31
  subtype3   63   23
        clus
vv       subtype1 subtype2 subtype3
  COLON        40       83       63
  RECTUM       13       31       23
D6V4, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   24   30
  subtype2   59   55
  subtype3   45   42
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       30       55       42
  MALE         24       59       45
D6V5, multiclass
D6V6, multiclass
D6V7, multiclass
D6V8, multiclass
D6V9, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   54    0
  subtype2  113    1
  subtype3   86    1
     clus
vv    subtype1 subtype2 subtype3
  NO         0        1        1
  YES       54      113       86
D6V10, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   46    8
  subtype2  107    7
  subtype3   86    1
     clus
vv    subtype1 subtype2 subtype3
  NO         8        7        1
  YES       46      107       86

Clustering(7) Variable = MIRSEQ_CHIERARCHICAL
D7V1, survival
  [1] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [37] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [43] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [55] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [67] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[103] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[109] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[115] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[121] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype2"
  [1] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [37] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [43] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [55] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [67] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[103] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[109] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[115] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[121] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype2"
  [1] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [37] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [43] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [55] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [67] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[103] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[109] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[115] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[121] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype2"
[1] "hr=" "1.3"
D7V2, continuous
D7V3, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   57   22
  subtype2  129   45
        clus
vv       subtype1 subtype2
  COLON        57      129
  RECTUM       22       45
D7V4, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   37   43
  subtype2   91   84
        clus
vv       subtype1 subtype2
  FEMALE       43       84
  MALE         37       91
D7V5, multiclass
D7V6, multiclass
D7V7, multiclass
D7V8, multiclass
D7V9, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   79    1
  subtype2  174    1
     clus
vv    subtype1 subtype2
  NO         1        1
  YES       79      174
D7V10, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   78    2
  subtype2  161   14
     clus
vv    subtype1 subtype2
  NO         2       14
  YES       78      161
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
               "PRIMARY.SITE.OF.DISEASE" 
                                      V4 
                                "GENDER" 
                                      V5 
                     "HISTOLOGICAL.TYPE" 
                                      V6 
                           "PATHOLOGY.T" 
                                      V7 
                           "PATHOLOGY.N" 
                                      V8 
                   "PATHOLOGICSPREAD(M)" 
                                      V9 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                     V10 
                   "NEOADJUVANT.THERAPY" 
> q(save="no")
