
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.32.3479/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.32.3479/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/143184/COADREAD.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/COADREAD/1551751/1.GDAC_clinicalDataPicker.Finished/COADREAD.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=591, in cluster file=122, common to both=122
[1] "Reduce the number of clustering variables from 111 to 100."
[1] 100 122
[1] "APC MUTATION ANALYSIS"
[1] 3
  APC MUTATED APC WILD-TYPE 
           88            34 
  APC MUTATED APC WILD-TYPE 
           88            34 
[1] "SMAD4 MUTATION ANALYSIS"
[1] 3
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             15             107 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             15             107 
[1] "FAM123B MUTATION ANALYSIS"
[1] 3
  FAM123B MUTATED FAM123B WILD-TYPE 
               12               110 
  FAM123B MUTATED FAM123B WILD-TYPE 
               12               110 
[1] "FBXW7 MUTATION ANALYSIS"
[1] 3
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             19             103 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             19             103 
[1] "KRAS MUTATION ANALYSIS"
[1] 3
  KRAS MUTATED KRAS WILD-TYPE 
            55             67 
  KRAS MUTATED KRAS WILD-TYPE 
            55             67 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
            72             50 
  TP53 MUTATED TP53 WILD-TYPE 
            72             50 
[1] "NRAS MUTATION ANALYSIS"
[1] 3
  NRAS MUTATED NRAS WILD-TYPE 
             9            113 
  NRAS MUTATED NRAS WILD-TYPE 
             9            113 
[1] "BRAF MUTATION ANALYSIS"
[1] 3
  BRAF MUTATED BRAF WILD-TYPE 
            10            112 
  BRAF MUTATED BRAF WILD-TYPE 
            10            112 
[1] "ARID1A MUTATION ANALYSIS"
[1] 3
  ARID1A MUTATED ARID1A WILD-TYPE 
              14              108 
  ARID1A MUTATED ARID1A WILD-TYPE 
              14              108 
[1] "KRTAP5-5 MUTATION ANALYSIS"
[1] 3
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
                 4                118 
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
                 4                118 
[1] "ZC3H13 MUTATION ANALYSIS"
[1] 3
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
              14              108 
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
              14              108 
[1] "TCF7L2 MUTATION ANALYSIS"
[1] 3
  TCF7L2 MUTATED TCF7L2 WILD-TYPE 
               8              114 
  TCF7L2 MUTATED TCF7L2 WILD-TYPE 
               8              114 
[1] "LRP1B MUTATION ANALYSIS"
[1] 3
  LRP1B MUTATED LRP1B WILD-TYPE 
             19             103 
  LRP1B MUTATED LRP1B WILD-TYPE 
             19             103 
[1] "KIAA1804 MUTATION ANALYSIS"
[1] 3
  KIAA1804 MUTATED KIAA1804 WILD-TYPE 
                10                112 
  KIAA1804 MUTATED KIAA1804 WILD-TYPE 
                10                112 
[1] "KLK2 MUTATION ANALYSIS"
[1] 3
  KLK2 MUTATED KLK2 WILD-TYPE 
             3            119 
  KLK2 MUTATED KLK2 WILD-TYPE 
             3            119 
[1] "SMAD2 MUTATION ANALYSIS"
[1] 3
  SMAD2 MUTATED SMAD2 WILD-TYPE 
              6             116 
  SMAD2 MUTATED SMAD2 WILD-TYPE 
              6             116 
[1] "DMD MUTATION ANALYSIS"
[1] 3
  DMD MUTATED DMD WILD-TYPE 
           16           106 
  DMD MUTATED DMD WILD-TYPE 
           16           106 
[1] "CSMD3 MUTATION ANALYSIS"
[1] 3
  CSMD3 MUTATED CSMD3 WILD-TYPE 
             17             105 
  CSMD3 MUTATED CSMD3 WILD-TYPE 
             17             105 
[1] "BAI3 MUTATION ANALYSIS"
[1] 3
  BAI3 MUTATED BAI3 WILD-TYPE 
            11            111 
  BAI3 MUTATED BAI3 WILD-TYPE 
            11            111 
[1] "WBSCR17 MUTATION ANALYSIS"
[1] 3
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
                8               114 
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
                8               114 
[1] "EVC2 MUTATION ANALYSIS"
[1] 3
  EVC2 MUTATED EVC2 WILD-TYPE 
            11            111 
  EVC2 MUTATED EVC2 WILD-TYPE 
            11            111 
[1] "LIFR MUTATION ANALYSIS"
[1] 3
  LIFR MUTATED LIFR WILD-TYPE 
            10            112 
  LIFR MUTATED LIFR WILD-TYPE 
            10            112 
[1] "OPCML MUTATION ANALYSIS"
[1] 3
  OPCML MUTATED OPCML WILD-TYPE 
              6             116 
  OPCML MUTATED OPCML WILD-TYPE 
              6             116 
[1] "CDC27 MUTATION ANALYSIS"
[1] 3
  CDC27 MUTATED CDC27 WILD-TYPE 
              6             116 
  CDC27 MUTATED CDC27 WILD-TYPE 
              6             116 
[1] "TUSC3 MUTATION ANALYSIS"
[1] 3
  TUSC3 MUTATED TUSC3 WILD-TYPE 
              5             117 
  TUSC3 MUTATED TUSC3 WILD-TYPE 
              5             117 
[1] "ATP10A MUTATION ANALYSIS"
[1] 3
  ATP10A MUTATED ATP10A WILD-TYPE 
               9              113 
  ATP10A MUTATED ATP10A WILD-TYPE 
               9              113 
[1] "FAT4 MUTATION ANALYSIS"
[1] 3
  FAT4 MUTATED FAT4 WILD-TYPE 
            15            107 
  FAT4 MUTATED FAT4 WILD-TYPE 
            15            107 
[1] "MAPK10 MUTATION ANALYSIS"
[1] 3
  MAPK10 MUTATED MAPK10 WILD-TYPE 
               6              116 
  MAPK10 MUTATED MAPK10 WILD-TYPE 
               6              116 
[1] "SYNE1 MUTATION ANALYSIS"
[1] 3
  SYNE1 MUTATED SYNE1 WILD-TYPE 
             25              97 
  SYNE1 MUTATED SYNE1 WILD-TYPE 
             25              97 
[1] "GPC6 MUTATION ANALYSIS"
[1] 3
  GPC6 MUTATED GPC6 WILD-TYPE 
             7            115 
  GPC6 MUTATED GPC6 WILD-TYPE 
             7            115 
[1] "FAT2 MUTATION ANALYSIS"
[1] 3
  FAT2 MUTATED FAT2 WILD-TYPE 
            13            109 
  FAT2 MUTATED FAT2 WILD-TYPE 
            13            109 
[1] "CDH9 MUTATION ANALYSIS"
[1] 3
  CDH9 MUTATED CDH9 WILD-TYPE 
             8            114 
  CDH9 MUTATED CDH9 WILD-TYPE 
             8            114 
[1] "PIK3R1 MUTATION ANALYSIS"
[1] 3
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
               5              117 
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
               5              117 
[1] "C3ORF30 MUTATION ANALYSIS"
[1] 3
  C3ORF30 MUTATED C3ORF30 WILD-TYPE 
                3               119 
  C3ORF30 MUTATED C3ORF30 WILD-TYPE 
                3               119 
[1] "HCLS1 MUTATION ANALYSIS"
[1] 3
  HCLS1 MUTATED HCLS1 WILD-TYPE 
              6             116 
  HCLS1 MUTATED HCLS1 WILD-TYPE 
              6             116 
[1] "IL1RAPL2 MUTATION ANALYSIS"
[1] 3
  IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE 
                 6                116 
  IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE 
                 6                116 
[1] "DPF2 MUTATION ANALYSIS"
[1] 3
  DPF2 MUTATED DPF2 WILD-TYPE 
             4            118 
  DPF2 MUTATED DPF2 WILD-TYPE 
             4            118 
[1] "ELF3 MUTATION ANALYSIS"
[1] 3
  ELF3 MUTATED ELF3 WILD-TYPE 
             4            118 
  ELF3 MUTATED ELF3 WILD-TYPE 
             4            118 
[1] "NRXN3 MUTATION ANALYSIS"
[1] 3
  NRXN3 MUTATED NRXN3 WILD-TYPE 
             11             111 
  NRXN3 MUTATED NRXN3 WILD-TYPE 
             11             111 
[1] "TRIM44 MUTATION ANALYSIS"
[1] 3
  TRIM44 MUTATED TRIM44 WILD-TYPE 
               5              117 
  TRIM44 MUTATED TRIM44 WILD-TYPE 
               5              117 
[1] "SESTD1 MUTATION ANALYSIS"
[1] 3
  SESTD1 MUTATED SESTD1 WILD-TYPE 
               7              115 
  SESTD1 MUTATED SESTD1 WILD-TYPE 
               7              115 
[1] "CD180 MUTATION ANALYSIS"
[1] 3
  CD180 MUTATED CD180 WILD-TYPE 
              6             116 
  CD180 MUTATED CD180 WILD-TYPE 
              6             116 
[1] "CTNNB1 MUTATION ANALYSIS"
[1] 3
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
               7              115 
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
               7              115 
[1] "CDH8 MUTATION ANALYSIS"
[1] 3
  CDH8 MUTATED CDH8 WILD-TYPE 
             8            114 
  CDH8 MUTATED CDH8 WILD-TYPE 
             8            114 
[1] "NALCN MUTATION ANALYSIS"
[1] 3
  NALCN MUTATED NALCN WILD-TYPE 
             12             110 
  NALCN MUTATED NALCN WILD-TYPE 
             12             110 
[1] "PCDH9 MUTATION ANALYSIS"
[1] 3
  PCDH9 MUTATED PCDH9 WILD-TYPE 
             10             112 
  PCDH9 MUTATED PCDH9 WILD-TYPE 
             10             112 
[1] "ZCWPW2 MUTATION ANALYSIS"
[1] 3
  ZCWPW2 MUTATED ZCWPW2 WILD-TYPE 
               5              117 
  ZCWPW2 MUTATED ZCWPW2 WILD-TYPE 
               5              117 
[1] "CDH12 MUTATION ANALYSIS"
[1] 3
  CDH12 MUTATED CDH12 WILD-TYPE 
              9             113 
  CDH12 MUTATED CDH12 WILD-TYPE 
              9             113 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
               7              115 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
               7              115 
[1] "FZD3 MUTATION ANALYSIS"
[1] 3
  FZD3 MUTATED FZD3 WILD-TYPE 
             5            117 
  FZD3 MUTATED FZD3 WILD-TYPE 
             5            117 
[1] "DACH2 MUTATION ANALYSIS"
[1] 3
  DACH2 MUTATED DACH2 WILD-TYPE 
              8             114 
  DACH2 MUTATED DACH2 WILD-TYPE 
              8             114 
[1] "TXNDC3 MUTATION ANALYSIS"
[1] 3
  TXNDC3 MUTATED TXNDC3 WILD-TYPE 
               6              116 
  TXNDC3 MUTATED TXNDC3 WILD-TYPE 
               6              116 
[1] "BCHE MUTATION ANALYSIS"
[1] 3
  BCHE MUTATED BCHE WILD-TYPE 
             6            116 
  BCHE MUTATED BCHE WILD-TYPE 
             6            116 
[1] "ERBB2 MUTATION ANALYSIS"
[1] 3
  ERBB2 MUTATED ERBB2 WILD-TYPE 
              4             118 
  ERBB2 MUTATED ERBB2 WILD-TYPE 
              4             118 
[1] "ZSWIM3 MUTATION ANALYSIS"
[1] 3
  ZSWIM3 MUTATED ZSWIM3 WILD-TYPE 
               5              117 
  ZSWIM3 MUTATED ZSWIM3 WILD-TYPE 
               5              117 
[1] "TASP1 MUTATION ANALYSIS"
[1] 3
  TASP1 MUTATED TASP1 WILD-TYPE 
              4             118 
  TASP1 MUTATED TASP1 WILD-TYPE 
              4             118 
[1] "DNAH2 MUTATION ANALYSIS"
[1] 3
  DNAH2 MUTATED DNAH2 WILD-TYPE 
             17             105 
  DNAH2 MUTATED DNAH2 WILD-TYPE 
             17             105 
[1] "BANK1 MUTATION ANALYSIS"
[1] 3
  BANK1 MUTATED BANK1 WILD-TYPE 
              6             116 
  BANK1 MUTATED BANK1 WILD-TYPE 
              6             116 
[1] "CASP14 MUTATION ANALYSIS"
[1] 3
  CASP14 MUTATED CASP14 WILD-TYPE 
               5              117 
  CASP14 MUTATED CASP14 WILD-TYPE 
               5              117 
[1] "CPXCR1 MUTATION ANALYSIS"
[1] 3
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               5              117 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               5              117 
[1] "P2RY10 MUTATION ANALYSIS"
[1] 3
  P2RY10 MUTATED P2RY10 WILD-TYPE 
               4              118 
  P2RY10 MUTATED P2RY10 WILD-TYPE 
               4              118 
[1] "SPATA8 MUTATION ANALYSIS"
[1] 3
  SPATA8 MUTATED SPATA8 WILD-TYPE 
               3              119 
  SPATA8 MUTATED SPATA8 WILD-TYPE 
               3              119 
[1] "GAS2L2 MUTATION ANALYSIS"
[1] 3
  GAS2L2 MUTATED GAS2L2 WILD-TYPE 
               3              119 
  GAS2L2 MUTATED GAS2L2 WILD-TYPE 
               3              119 
[1] "GAB3 MUTATION ANALYSIS"
[1] 3
  GAB3 MUTATED GAB3 WILD-TYPE 
             5            117 
  GAB3 MUTATED GAB3 WILD-TYPE 
             5            117 
[1] "MCF2 MUTATION ANALYSIS"
[1] 3
  MCF2 MUTATED MCF2 WILD-TYPE 
             7            115 
  MCF2 MUTATED MCF2 WILD-TYPE 
             7            115 
[1] "NRG1 MUTATION ANALYSIS"
[1] 3
  NRG1 MUTATED NRG1 WILD-TYPE 
             8            114 
  NRG1 MUTATED NRG1 WILD-TYPE 
             8            114 
[1] "MAP7 MUTATION ANALYSIS"
[1] 3
  MAP7 MUTATED MAP7 WILD-TYPE 
             6            116 
  MAP7 MUTATED MAP7 WILD-TYPE 
             6            116 
[1] "SORCS1 MUTATION ANALYSIS"
[1] 3
  SORCS1 MUTATED SORCS1 WILD-TYPE 
               8              114 
  SORCS1 MUTATED SORCS1 WILD-TYPE 
               8              114 
[1] "DOCK2 MUTATION ANALYSIS"
[1] 3
  DOCK2 MUTATED DOCK2 WILD-TYPE 
             11             111 
  DOCK2 MUTATED DOCK2 WILD-TYPE 
             11             111 
[1] "HMCN1 MUTATION ANALYSIS"
[1] 3
  HMCN1 MUTATED HMCN1 WILD-TYPE 
             15             107 
  HMCN1 MUTATED HMCN1 WILD-TYPE 
             15             107 
[1] "VCAN MUTATION ANALYSIS"
[1] 3
  VCAN MUTATED VCAN WILD-TYPE 
            10            112 
  VCAN MUTATED VCAN WILD-TYPE 
            10            112 
[1] "IFT80 MUTATION ANALYSIS"
[1] 3
  IFT80 MUTATED IFT80 WILD-TYPE 
              6             116 
  IFT80 MUTATED IFT80 WILD-TYPE 
              6             116 
[1] "ZIM3 MUTATION ANALYSIS"
[1] 3
  ZIM3 MUTATED ZIM3 WILD-TYPE 
             5            117 
  ZIM3 MUTATED ZIM3 WILD-TYPE 
             5            117 
[1] "CCBP2 MUTATION ANALYSIS"
[1] 3
  CCBP2 MUTATED CCBP2 WILD-TYPE 
              6             116 
  CCBP2 MUTATED CCBP2 WILD-TYPE 
              6             116 
[1] "LUZP2 MUTATION ANALYSIS"
[1] 3
  LUZP2 MUTATED LUZP2 WILD-TYPE 
              3             119 
  LUZP2 MUTATED LUZP2 WILD-TYPE 
              3             119 
[1] "CYP19A1 MUTATION ANALYSIS"
[1] 3
  CYP19A1 MUTATED CYP19A1 WILD-TYPE 
                6               116 
  CYP19A1 MUTATED CYP19A1 WILD-TYPE 
                6               116 
[1] "GFRA1 MUTATION ANALYSIS"
[1] 3
  GFRA1 MUTATED GFRA1 WILD-TYPE 
              6             116 
  GFRA1 MUTATED GFRA1 WILD-TYPE 
              6             116 
[1] "CTSO MUTATION ANALYSIS"
[1] 3
  CTSO MUTATED CTSO WILD-TYPE 
             5            117 
  CTSO MUTATED CTSO WILD-TYPE 
             5            117 
[1] "KCNB2 MUTATION ANALYSIS"
[1] 3
  KCNB2 MUTATED KCNB2 WILD-TYPE 
              7             115 
  KCNB2 MUTATED KCNB2 WILD-TYPE 
              7             115 
[1] "MGC42105 MUTATION ANALYSIS"
[1] 3
  MGC42105 MUTATED MGC42105 WILD-TYPE 
                 5                117 
  MGC42105 MUTATED MGC42105 WILD-TYPE 
                 5                117 
[1] "CFHR5 MUTATION ANALYSIS"
[1] 3
  CFHR5 MUTATED CFHR5 WILD-TYPE 
              4             118 
  CFHR5 MUTATED CFHR5 WILD-TYPE 
              4             118 
[1] "ADAM18 MUTATION ANALYSIS"
[1] 3
  ADAM18 MUTATED ADAM18 WILD-TYPE 
               4              118 
  ADAM18 MUTATED ADAM18 WILD-TYPE 
               4              118 
[1] "FAM133A MUTATION ANALYSIS"
[1] 3
  FAM133A MUTATED FAM133A WILD-TYPE 
                3               119 
  FAM133A MUTATED FAM133A WILD-TYPE 
                3               119 
[1] "RAD21 MUTATION ANALYSIS"
[1] 3
  RAD21 MUTATED RAD21 WILD-TYPE 
              5             117 
  RAD21 MUTATED RAD21 WILD-TYPE 
              5             117 
[1] "BMPR2 MUTATION ANALYSIS"
[1] 3
  BMPR2 MUTATED BMPR2 WILD-TYPE 
              6             116 
  BMPR2 MUTATED BMPR2 WILD-TYPE 
              6             116 
[1] "DPYD MUTATION ANALYSIS"
[1] 3
  DPYD MUTATED DPYD WILD-TYPE 
             7            115 
  DPYD MUTATED DPYD WILD-TYPE 
             7            115 
[1] "C4BPA MUTATION ANALYSIS"
[1] 3
  C4BPA MUTATED C4BPA WILD-TYPE 
              6             116 
  C4BPA MUTATED C4BPA WILD-TYPE 
              6             116 
[1] "F13A1 MUTATION ANALYSIS"
[1] 3
  F13A1 MUTATED F13A1 WILD-TYPE 
              5             117 
  F13A1 MUTATED F13A1 WILD-TYPE 
              5             117 
[1] "FREM2 MUTATION ANALYSIS"
[1] 3
  FREM2 MUTATED FREM2 WILD-TYPE 
             10             112 
  FREM2 MUTATED FREM2 WILD-TYPE 
             10             112 
[1] "CDCP2 MUTATION ANALYSIS"
[1] 3
  CDCP2 MUTATED CDCP2 WILD-TYPE 
              5             117 
  CDCP2 MUTATED CDCP2 WILD-TYPE 
              5             117 
[1] "RNF219 MUTATION ANALYSIS"
[1] 3
  RNF219 MUTATED RNF219 WILD-TYPE 
               5              117 
  RNF219 MUTATED RNF219 WILD-TYPE 
               5              117 
[1] "OR5B12 MUTATION ANALYSIS"
[1] 3
  OR5B12 MUTATED OR5B12 WILD-TYPE 
               4              118 
  OR5B12 MUTATED OR5B12 WILD-TYPE 
               4              118 
[1] "FLRT2 MUTATION ANALYSIS"
[1] 3
  FLRT2 MUTATED FLRT2 WILD-TYPE 
              7             115 
  FLRT2 MUTATED FLRT2 WILD-TYPE 
              7             115 
[1] "EPHA5 MUTATION ANALYSIS"
[1] 3
  EPHA5 MUTATED EPHA5 WILD-TYPE 
              7             115 
  EPHA5 MUTATED EPHA5 WILD-TYPE 
              7             115 
[1] "ODZ1 MUTATION ANALYSIS"
[1] 3
  ODZ1 MUTATED ODZ1 WILD-TYPE 
            10            112 
  ODZ1 MUTATED ODZ1 WILD-TYPE 
            10            112 
[1] "SLC45A2 MUTATION ANALYSIS"
[1] 3
  SLC45A2 MUTATED SLC45A2 WILD-TYPE 
                4               118 
  SLC45A2 MUTATED SLC45A2 WILD-TYPE 
                4               118 
[1] "C14ORF106 MUTATION ANALYSIS"
[1] 3
  C14ORF106 MUTATED C14ORF106 WILD-TYPE 
                  6                 116 
  C14ORF106 MUTATED C14ORF106 WILD-TYPE 
                  6                 116 
[1] "KCNT2 MUTATION ANALYSIS"
[1] 3
  KCNT2 MUTATED KCNT2 WILD-TYPE 
              7             115 
  KCNT2 MUTATED KCNT2 WILD-TYPE 
              7             115 
[1] "MAGEC2 MUTATION ANALYSIS"
[1] 3
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
               5              117 
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
               5              117 
[1] "CWF19L2 MUTATION ANALYSIS"
[1] 3
  CWF19L2 MUTATED CWF19L2 WILD-TYPE 
                5               117 
  CWF19L2 MUTATED CWF19L2 WILD-TYPE 
                5               117 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "HISTOLOGICALTYPE"                      
[11] "PATHOLOGICSPREAD(PT)"                  
[12] "PATHOLOGICSPREAD(PN)"                  
[13] "PATHOLOGICSPREAD(M)"                   
[14] "RADIATIONS.RADIATION.REGIMENINDICATION"
[15] "NEOADJUVANTTHERAPY"                    
[16] "BATCHNUMBER"                           

Input Data has 16 rows and 122 columns.

[1] "Batch" "16"   
[1] "Last Follow UP"
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
         423          503          523          447          541          437 
TCGA-A6-2683 TCGA-AA-3514 TCGA-AA-3516 TCGA-AA-3517 TCGA-AA-3518 TCGA-AA-3519 
         472           NA           NA           NA           31           NA 
TCGA-AA-3520 TCGA-AA-3521 TCGA-AA-3522 TCGA-AA-3524 TCGA-AA-3525 TCGA-AA-3526 
          NA           NA           NA           NA           NA           30 
TCGA-AA-3527 TCGA-AA-3529 TCGA-AA-3531 TCGA-AA-3532 TCGA-AA-3534 TCGA-AA-3538 
          NA           NA           NA           NA           NA           NA 
TCGA-AA-3542 TCGA-AA-3543 TCGA-AA-3544 TCGA-AA-3548 TCGA-AA-3549 TCGA-AA-3552 
          NA           NA           NA           NA           NA           NA 
TCGA-AA-3553 TCGA-AA-3554 TCGA-AA-3555 TCGA-AA-3556 TCGA-AA-3558 TCGA-AA-3560 
          NA           NA           30           NA           NA           NA 
TCGA-AA-3561 TCGA-AA-3562 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
          NA           31          548          578          913         1035 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
         548          548          517          822           30          517 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01Q TCGA-AF-2689 
         456          669          396          365           31          482 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3574 TCGA-AG-3575 
         323          412          387          316           NA           NA 
TCGA-AG-3578 TCGA-AG-3580 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3584 
          NA           NA           31           31           61           NA 
TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3593 TCGA-AG-3594 TCGA-AG-3598 TCGA-AG-3599 
          NA           31           NA           NA           NA           30 
TCGA-AG-3600 TCGA-AG-3601 TCGA-AG-3602 TCGA-AG-3605 TCGA-AG-3608 TCGA-AG-3609 
          NA           NA           NA           NA           NA           NA 
TCGA-AG-3611 TCGA-AG-3612 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3881 
          NA           NA           31           29           30           NA 
TCGA-AG-3882 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3890 TCGA-AG-3892 TCGA-AG-3893 
          NA           NA           28           NA           31           30 
TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3898 TCGA-AG-3901 TCGA-AG-3902 TCGA-AG-3909 
          30           NA           NA           NA           NA           NA 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4005 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4015 
          31           31           NA           31           31           NA 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
         637          423          183          789          700          518 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
         484          396           31          365         2130         1946 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
         334         1519           59         1184         1884         1246 
TCGA-AG-A032 TCGA-AG-A036 
        1156         2192 
Variable 1:'AGE':	nDistinctValues=41,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=4,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=44,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=8,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=44,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'HISTOLOGICAL.TYPE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'PATHOLOGY.T':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGY.N':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'PATHOLOGICSPREAD(M)':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 15:'NEOADJUVANT.THERAPY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'BATCH.NUMBER':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                     "PRIMARY.SITE.OF.DISEASE"
[3] "GENDER"                  "HISTOLOGICAL.TYPE"      
[5] "PATHOLOGY.T"             "PATHOLOGY.N"            
[7] "PATHOLOGICSPREAD(M)"     "NEOADJUVANT.THERAPY"    
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "5"          
[1] "PATHOLOGY.N" "6"          
Output Data has 122 columns, 1 survival variables, and 8 non-survival variables.
AGE, nv=41, binary=FALSE, numeric=TRUE
PRIMARY.SITE.OF.DISEASE, nv=2, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=4, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
T1 T2 T3 T4 
 6 25 84  6 
[1] "table(vv)"
vv
T1 T2 T3 T4 
 6 25 84  6 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
T1 T2 T3 T4 
 6 25 84  6 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


T1 T2 T3 T4 
 6 25 84  6 
PATHOLOGY.N, nv=3, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
N0 N1 N2 
78 22 22 
[1] "table(vv)"
vv
N0 N1 N2 
78 22 22 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
N0 N1 N2 
78 22 22 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


N0 N1 N2 
78 22 22 
PATHOLOGICSPREAD(M), nv=2, binary=FALSE, numeric=FALSE
NEOADJUVANT.THERAPY, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = APC MUTATION ANALYSIS
D1V1, survival
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-3562    TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00Q    TCGA-AA-A00R 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A01F    TCGA-AA-A01G 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AF-2689    TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400 
  "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AF-3913    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-3599    TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-3892    TCGA-AG-3893    TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C 
  "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020 
"APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-A025    TCGA-AG-A026    TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-A032    TCGA-AG-A036 
  "APC MUTATED"   "APC MUTATED" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-3562    TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00Q    TCGA-AA-A00R 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A01F    TCGA-AA-A01G 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AF-2689    TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400 
  "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AF-3913    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-3599    TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-3892    TCGA-AG-3893    TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C 
  "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020 
"APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-A025    TCGA-AG-A026    TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-A032    TCGA-AG-A036 
  "APC MUTATED"   "APC MUTATED" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-3562    TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00Q    TCGA-AA-A00R 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A01F    TCGA-AA-A01G 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AF-2689    TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400 
  "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AF-3913    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-3599    TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-3892    TCGA-AG-3893    TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C 
  "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020 
"APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-A025    TCGA-AG-A026    TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-A032    TCGA-AG-A036 
  "APC MUTATED"   "APC MUTATED" 
[1] "hr="   "3e+08"
D1V2, continuous
D1V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  APC MUTATED     31   56
  APC WILD-TYPE   22   12
        clus
vv       APC MUTATED APC WILD-TYPE
  COLON           31            22
  RECTUM          56            12
D1V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  APC MUTATED     54   34
  APC WILD-TYPE   16   18
        clus
vv       APC MUTATED APC WILD-TYPE
  FEMALE          34            18
  MALE            54            16
D1V5, multiclass
                                clus
vv                               APC MUTATED APC WILD-TYPE
  COLON ADENOCARCINOMA                    27            18
  COLON MUCINOUS ADENOCARCINOMA            3             4
  RECTAL ADENOCARCINOMA                   47            10
  RECTAL MUCINOUS ADENOCARCINOMA           6             2
D1V6, multiclass
    clus
vv   APC MUTATED APC WILD-TYPE
  T1           6             0
  T2          21             4
  T3          57            27
  T4           4             2
D1V7, multiclass
    clus
vv   APC MUTATED APC WILD-TYPE
  N0          57            21
  N1          16             6
  N2          15             7
D1V8, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  APC MUTATED     79    8
  APC WILD-TYPE   30    4
    clus
vv   APC MUTATED APC WILD-TYPE
  M0          79            30
  M1           8             4
D1V9, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  APC MUTATED     85    3
  APC WILD-TYPE   31    3
     clus
vv    APC MUTATED APC WILD-TYPE
  NO            3             3
  YES          85            31

Clustering(2) Variable = SMAD4 MUTATION ANALYSIS
D2V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
[1] "hr="     "2.3e+08"
D2V2, continuous
D2V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD4 MUTATED      7    8
  SMAD4 WILD-TYPE   46   60
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  COLON              7              46
  RECTUM             8              60
D2V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD4 MUTATED      8    7
  SMAD4 WILD-TYPE   62   45
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  FEMALE             7              45
  MALE               8              62
D2V5, multiclass
                                clus
vv                               SMAD4 MUTATED SMAD4 WILD-TYPE
  COLON ADENOCARCINOMA                       5              40
  COLON MUCINOUS ADENOCARCINOMA              2               5
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             4               4
D2V6, multiclass
    clus
vv   SMAD4 MUTATED SMAD4 WILD-TYPE
  T1             0               6
  T2             3              22
  T3            11              73
  T4             0               6
D2V7, multiclass
    clus
vv   SMAD4 MUTATED SMAD4 WILD-TYPE
  N0            10              68
  N1             3              19
  N2             2              20
D2V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD4 MUTATED     12    2
  SMAD4 WILD-TYPE   97   10
    clus
vv   SMAD4 MUTATED SMAD4 WILD-TYPE
  M0            12              97
  M1             2              10
D2V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD4 MUTATED     13    2
  SMAD4 WILD-TYPE  103    4
     clus
vv    SMAD4 MUTATED SMAD4 WILD-TYPE
  NO              2               4
  YES            13             103

Clustering(3) Variable = FAM123B MUTATION ANALYSIS
D3V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-AA-3518 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-A00A 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00Q        TCGA-AA-A00R 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A01F 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01Q        TCGA-AF-2689        TCGA-AF-2691 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3581 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587        TCGA-AG-3599 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3887 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3999 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-A002 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" 
       TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H        TCGA-AG-A00Y 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015        TCGA-AG-A016 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02N 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED"   "FAM123B MUTATED" 
       TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-AA-3518 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-A00A 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00Q        TCGA-AA-A00R 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A01F 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01Q        TCGA-AF-2689        TCGA-AF-2691 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3581 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587        TCGA-AG-3599 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3887 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3999 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-A002 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" 
       TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H        TCGA-AG-A00Y 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015        TCGA-AG-A016 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02N 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED"   "FAM123B MUTATED" 
       TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-AA-3518 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-A00A 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00Q        TCGA-AA-A00R 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A01F 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01Q        TCGA-AF-2689        TCGA-AF-2691 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3581 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587        TCGA-AG-3599 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3887 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3999 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-A002 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" 
       TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H        TCGA-AG-A00Y 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015        TCGA-AG-A016 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02N 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED"   "FAM123B MUTATED" 
       TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
[1] "hr=" "2.9"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM123B MUTATED      6    6
  FAM123B WILD-TYPE   47   62
        clus
vv       FAM123B MUTATED FAM123B WILD-TYPE
  COLON                6                47
  RECTUM               6                62
D3V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM123B MUTATED      6    6
  FAM123B WILD-TYPE   64   46
        clus
vv       FAM123B MUTATED FAM123B WILD-TYPE
  FEMALE               6                46
  MALE                 6                64
D3V5, multiclass
                                clus
vv                               FAM123B MUTATED FAM123B WILD-TYPE
  COLON ADENOCARCINOMA                         5                40
  COLON MUCINOUS ADENOCARCINOMA                1                 6
  RECTAL ADENOCARCINOMA                        6                51
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D3V6, multiclass
    clus
vv   FAM123B MUTATED FAM123B WILD-TYPE
  T1               1                 5
  T2               3                22
  T3               8                76
  T4               0                 6
D3V7, multiclass
    clus
vv   FAM123B MUTATED FAM123B WILD-TYPE
  N0               8                70
  N1               1                21
  N2               3                19
D3V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM123B MUTATED     10    2
  FAM123B WILD-TYPE   99   10
    clus
vv   FAM123B MUTATED FAM123B WILD-TYPE
  M0              10                99
  M1               2                10
D3V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM123B MUTATED     12    0
  FAM123B WILD-TYPE  104    6
     clus
vv    FAM123B MUTATED FAM123B WILD-TYPE
  NO                0                 6
  YES              12               104

Clustering(4) Variable = FBXW7 MUTATION ANALYSIS
D4V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
[1] "hr="     "2.3e+08"
D4V2, continuous
D4V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FBXW7 MUTATED     10    9
  FBXW7 WILD-TYPE   43   59
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  COLON             10              43
  RECTUM             9              59
D4V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FBXW7 MUTATED      9   10
  FBXW7 WILD-TYPE   61   42
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  FEMALE            10              42
  MALE               9              61
D4V5, multiclass
                                clus
vv                               FBXW7 MUTATED FBXW7 WILD-TYPE
  COLON ADENOCARCINOMA                       6              39
  COLON MUCINOUS ADENOCARCINOMA              4               3
  RECTAL ADENOCARCINOMA                      7              50
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D4V6, multiclass
    clus
vv   FBXW7 MUTATED FBXW7 WILD-TYPE
  T1             1               5
  T2             2              23
  T3            14              70
  T4             1               5
D4V7, multiclass
    clus
vv   FBXW7 MUTATED FBXW7 WILD-TYPE
  N0            13              65
  N1             2              20
  N2             4              18
D4V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FBXW7 MUTATED     19    0
  FBXW7 WILD-TYPE   90   12
    clus
vv   FBXW7 MUTATED FBXW7 WILD-TYPE
  M0            19              90
  M1             0              12
D4V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FBXW7 MUTATED     17    2
  FBXW7 WILD-TYPE   99    4
     clus
vv    FBXW7 MUTATED FBXW7 WILD-TYPE
  NO              2               4
  YES            17              99

Clustering(5) Variable = KRAS MUTATION ANALYSIS
D5V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
[1] "hr="     "1.8e+09"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED     17   37
  KRAS WILD-TYPE   36   31
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  COLON            17             36
  RECTUM           37             31
D5V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED     30   25
  KRAS WILD-TYPE   40   27
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  FEMALE           25             27
  MALE             30             40
D5V5, multiclass
                                clus
vv                               KRAS MUTATED KRAS WILD-TYPE
  COLON ADENOCARCINOMA                     14             31
  COLON MUCINOUS ADENOCARCINOMA             2              5
  RECTAL ADENOCARCINOMA                    29             28
  RECTAL MUCINOUS ADENOCARCINOMA            6              2
D5V6, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  T1            6              0
  T2           10             15
  T3           37             47
  T4            2              4
D5V7, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  N0           38             40
  N1            9             13
  N2            8             14
D5V8, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED     49    5
  KRAS WILD-TYPE   60    7
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  M0           49             60
  M1            5              7
D5V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED     54    1
  KRAS WILD-TYPE   62    5
     clus
vv    KRAS MUTATED KRAS WILD-TYPE
  NO             1              5
  YES           54             62

Clustering(6) Variable = TP53 MUTATION ANALYSIS
D6V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
[1] "hr=" "1"  
D6V2, continuous
D6V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     27   45
  TP53 WILD-TYPE   26   23
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  COLON            27             26
  RECTUM           45             23
D6V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     46   26
  TP53 WILD-TYPE   24   26
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  FEMALE           26             26
  MALE             46             24
D6V5, multiclass
                                clus
vv                               TP53 MUTATED TP53 WILD-TYPE
  COLON ADENOCARCINOMA                     23             22
  COLON MUCINOUS ADENOCARCINOMA             3              4
  RECTAL ADENOCARCINOMA                    41             16
  RECTAL MUCINOUS ADENOCARCINOMA            4              4
D6V6, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  T1            2              4
  T2           14             11
  T3           51             33
  T4            4              2
D6V7, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  N0           45             33
  N1           13              9
  N2           14              8
D6V8, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     63    8
  TP53 WILD-TYPE   46    4
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  M0           63             46
  M1            8              4
D6V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     67    5
  TP53 WILD-TYPE   49    1
     clus
vv    TP53 MUTATED TP53 WILD-TYPE
  NO             5              1
  YES           67             49

Clustering(7) Variable = NRAS MUTATION ANALYSIS
D7V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
  "NRAS MUTATED" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
  "NRAS MUTATED" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
  "NRAS MUTATED" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
[1] "hr=" "7.7"
D7V2, continuous
D7V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRAS MUTATED      4    5
  NRAS WILD-TYPE   49   63
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  COLON             4             49
  RECTUM            5             63
D7V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRAS MUTATED      6    3
  NRAS WILD-TYPE   64   49
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  FEMALE            3             49
  MALE              6             64
D7V5, multiclass
                                clus
vv                               NRAS MUTATED NRAS WILD-TYPE
  COLON ADENOCARCINOMA                      4             41
  COLON MUCINOUS ADENOCARCINOMA             0              7
  RECTAL ADENOCARCINOMA                     5             52
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D7V6, multiclass
    clus
vv   NRAS MUTATED NRAS WILD-TYPE
  T1            2              4
  T2            2             23
  T3            5             79
  T4            0              6
D7V7, multiclass
    clus
vv   NRAS MUTATED NRAS WILD-TYPE
  N0            5             73
  N1            3             19
  N2            1             21
D7V8, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRAS MUTATED      7    1
  NRAS WILD-TYPE  102   11
    clus
vv   NRAS MUTATED NRAS WILD-TYPE
  M0            7            102
  M1            1             11
D7V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRAS MUTATED      8    1
  NRAS WILD-TYPE  108    5
     clus
vv    NRAS MUTATED NRAS WILD-TYPE
  NO             1              5
  YES            8            108

Clustering(8) Variable = BRAF MUTATION ANALYSIS
D8V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
[1] "hr="   "8e+07"
D8V2, continuous
D8V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED      8    2
  BRAF WILD-TYPE   45   66
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  COLON             8             45
  RECTUM            2             66
D8V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED      6    4
  BRAF WILD-TYPE   64   48
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  FEMALE            4             48
  MALE              6             64
D8V5, multiclass
                                clus
vv                               BRAF MUTATED BRAF WILD-TYPE
  COLON ADENOCARCINOMA                      4             41
  COLON MUCINOUS ADENOCARCINOMA             4              3
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            1              7
D8V6, multiclass
    clus
vv   BRAF MUTATED BRAF WILD-TYPE
  T1            0              6
  T2            3             22
  T3            5             79
  T4            1              5
D8V7, multiclass
    clus
vv   BRAF MUTATED BRAF WILD-TYPE
  N0            5             73
  N1            3             19
  N2            2             20
D8V8, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED     10    0
  BRAF WILD-TYPE   99   12
    clus
vv   BRAF MUTATED BRAF WILD-TYPE
  M0           10             99
  M1            0             12
D8V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED      9    1
  BRAF WILD-TYPE  107    5
     clus
vv    BRAF MUTATED BRAF WILD-TYPE
  NO             1              5
  YES            9            107

Clustering(9) Variable = ARID1A MUTATION ANALYSIS
D9V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
[1] "hr="     "2.3e+08"
D9V2, continuous
D9V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARID1A MUTATED      9    5
  ARID1A WILD-TYPE   44   63
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  COLON               9               44
  RECTUM              5               63
D9V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARID1A MUTATED      6    8
  ARID1A WILD-TYPE   64   44
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  FEMALE              8               44
  MALE                6               64
D9V5, multiclass
                                clus
vv                               ARID1A MUTATED ARID1A WILD-TYPE
  COLON ADENOCARCINOMA                        5               40
  COLON MUCINOUS ADENOCARCINOMA               4                3
  RECTAL ADENOCARCINOMA                       5               52
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D9V6, multiclass
    clus
vv   ARID1A MUTATED ARID1A WILD-TYPE
  T1              2                4
  T2              2               23
  T3              8               76
  T4              1                5
D9V7, multiclass
    clus
vv   ARID1A MUTATED ARID1A WILD-TYPE
  N0             12               66
  N1              1               21
  N2              1               21
D9V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARID1A MUTATED     14    0
  ARID1A WILD-TYPE   95   12
    clus
vv   ARID1A MUTATED ARID1A WILD-TYPE
  M0             14               95
  M1              0               12
D9V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARID1A MUTATED     13    1
  ARID1A WILD-TYPE  103    5
     clus
vv    ARID1A MUTATED ARID1A WILD-TYPE
  NO               1                5
  YES             13              103

Clustering(10) Variable = KRTAP5-5 MUTATION ANALYSIS
D10V1, survival
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-2683         TCGA-AA-3518         TCGA-AA-3526 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-A00A 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00Q         TCGA-AA-A00R         TCGA-AA-A00U 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00W         TCGA-AA-A00Z         TCGA-AA-A01F 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01G         TCGA-AA-A01Q         TCGA-AF-2689 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-3400 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3581         TCGA-AG-3582 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3587         TCGA-AG-3599 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3726         TCGA-AG-3727         TCGA-AG-3878 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3892         TCGA-AG-3893 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3999         TCGA-AG-4001 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-A002 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A008         TCGA-AG-A00C         TCGA-AG-A00H 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A00Y         TCGA-AG-A011         TCGA-AG-A014 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A015         TCGA-AG-A016         TCGA-AG-A01L 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A01W         TCGA-AG-A01Y         TCGA-AG-A020 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A025         TCGA-AG-A026         TCGA-AG-A02G 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A02N         TCGA-AG-A02X         TCGA-AG-A032 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A036 
"KRTAP5-5 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-2683         TCGA-AA-3518         TCGA-AA-3526 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-A00A 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00Q         TCGA-AA-A00R         TCGA-AA-A00U 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00W         TCGA-AA-A00Z         TCGA-AA-A01F 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01G         TCGA-AA-A01Q         TCGA-AF-2689 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-3400 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3581         TCGA-AG-3582 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3587         TCGA-AG-3599 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3726         TCGA-AG-3727         TCGA-AG-3878 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3892         TCGA-AG-3893 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3999         TCGA-AG-4001 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-A002 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A008         TCGA-AG-A00C         TCGA-AG-A00H 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A00Y         TCGA-AG-A011         TCGA-AG-A014 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A015         TCGA-AG-A016         TCGA-AG-A01L 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A01W         TCGA-AG-A01Y         TCGA-AG-A020 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A025         TCGA-AG-A026         TCGA-AG-A02G 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A02N         TCGA-AG-A02X         TCGA-AG-A032 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A036 
"KRTAP5-5 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-2683         TCGA-AA-3518         TCGA-AA-3526 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-A00A 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00Q         TCGA-AA-A00R         TCGA-AA-A00U 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00W         TCGA-AA-A00Z         TCGA-AA-A01F 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01G         TCGA-AA-A01Q         TCGA-AF-2689 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-3400 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3581         TCGA-AG-3582 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3587         TCGA-AG-3599 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3726         TCGA-AG-3727         TCGA-AG-3878 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3892         TCGA-AG-3893 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3999         TCGA-AG-4001 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-A002 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A008         TCGA-AG-A00C         TCGA-AG-A00H 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A00Y         TCGA-AG-A011         TCGA-AG-A014 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A015         TCGA-AG-A016         TCGA-AG-A01L 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A01W         TCGA-AG-A01Y         TCGA-AG-A020 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A025         TCGA-AG-A026         TCGA-AG-A02G 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A02N         TCGA-AG-A02X         TCGA-AG-A032 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A036 
"KRTAP5-5 WILD-TYPE" 
[1] "Remove cluster labels:" "KRTAP5-5 MUTATED"      
clus
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
                 2                 65 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3518         TCGA-AA-3526         TCGA-AA-3555 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3562         TCGA-AA-A00A         TCGA-AA-A00D 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00Q 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A01F         TCGA-AA-A01G 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AF-2689         TCGA-AF-2691 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A011 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A01W         TCGA-AG-A01Y 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A020         TCGA-AG-A025         TCGA-AG-A026 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02N         TCGA-AG-A02X 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A032         TCGA-AG-A036 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
D10V2, continuous
D10V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KRTAP5-5 MUTATED      2    2
  KRTAP5-5 WILD-TYPE   51   66
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  COLON                 2                 51
  RECTUM                2                 66
D10V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KRTAP5-5 MUTATED      2    2
  KRTAP5-5 WILD-TYPE   68   50
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  FEMALE                2                 50
  MALE                  2                 68
D10V5, multiclass
                                clus
vv                               KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  COLON ADENOCARCINOMA                          1                 44
  COLON MUCINOUS ADENOCARCINOMA                 1                  6
  RECTAL ADENOCARCINOMA                         2                 55
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
D10V6, multiclass
    clus
vv   KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  T1                0                  6
  T2                0                 25
  T3                3                 81
  T4                0                  6
D10V7, multiclass
    clus
vv   KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  N0                4                 74
  N1                0                 22
  N2                0                 22
D10V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KRTAP5-5 MUTATED      4    0
  KRTAP5-5 WILD-TYPE  105   12
    clus
vv   KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  M0                4                105
  M1                0                 12
D10V9, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KRTAP5-5 MUTATED      3    1
  KRTAP5-5 WILD-TYPE  113    5
     clus
vv    KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  NO                 1                  5
  YES                3                113

Clustering(11) Variable = ZC3H13 MUTATION ANALYSIS
D11V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
[1] "hr="     "2.3e+08"
D11V2, continuous
D11V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZC3H13 MUTATED     10    4
  ZC3H13 WILD-TYPE   43   64
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  COLON              10               43
  RECTUM              4               64
D11V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZC3H13 MUTATED      6    8
  ZC3H13 WILD-TYPE   64   44
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  FEMALE              8               44
  MALE                6               64
D11V5, multiclass
                                clus
vv                               ZC3H13 MUTATED ZC3H13 WILD-TYPE
  COLON ADENOCARCINOMA                        6               39
  COLON MUCINOUS ADENOCARCINOMA               3                4
  RECTAL ADENOCARCINOMA                       4               53
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D11V6, multiclass
    clus
vv   ZC3H13 MUTATED ZC3H13 WILD-TYPE
  T1              2                4
  T2              3               22
  T3              8               76
  T4              1                5
D11V7, multiclass
    clus
vv   ZC3H13 MUTATED ZC3H13 WILD-TYPE
  N0              9               69
  N1              3               19
  N2              2               20
D11V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZC3H13 MUTATED     14    0
  ZC3H13 WILD-TYPE   95   12
    clus
vv   ZC3H13 MUTATED ZC3H13 WILD-TYPE
  M0             14               95
  M1              0               12
D11V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZC3H13 MUTATED     13    1
  ZC3H13 WILD-TYPE  103    5
     clus
vv    ZC3H13 MUTATED ZC3H13 WILD-TYPE
  NO               1                5
  YES             13              103

Clustering(12) Variable = TCF7L2 MUTATION ANALYSIS
D12V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
  "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
  "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
  "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
  "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
  "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
  "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
  "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
  "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
  "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
  "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
  "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
  "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" 
[1] "hr="     "7.4e+07"
D12V2, continuous
D12V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TCF7L2 MUTATED      1    6
  TCF7L2 WILD-TYPE   52   62
        clus
vv       TCF7L2 MUTATED TCF7L2 WILD-TYPE
  COLON               1               52
  RECTUM              6               62
D12V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TCF7L2 MUTATED      5    3
  TCF7L2 WILD-TYPE   65   49
        clus
vv       TCF7L2 MUTATED TCF7L2 WILD-TYPE
  FEMALE              3               49
  MALE                5               65
D12V5, multiclass
                                clus
vv                               TCF7L2 MUTATED TCF7L2 WILD-TYPE
  COLON ADENOCARCINOMA                        1               44
  COLON MUCINOUS ADENOCARCINOMA               0                7
  RECTAL ADENOCARCINOMA                       6               51
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D12V6, multiclass
    clus
vv   TCF7L2 MUTATED TCF7L2 WILD-TYPE
  T1              0                6
  T2              2               23
  T3              5               79
  T4              1                5
D12V7, multiclass
    clus
vv   TCF7L2 MUTATED TCF7L2 WILD-TYPE
  N0              5               73
  N1              2               20
  N2              1               21
D12V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TCF7L2 MUTATED      6    2
  TCF7L2 WILD-TYPE  103   10
    clus
vv   TCF7L2 MUTATED TCF7L2 WILD-TYPE
  M0              6              103
  M1              2               10
D12V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TCF7L2 MUTATED      8    0
  TCF7L2 WILD-TYPE  108    6
     clus
vv    TCF7L2 MUTATED TCF7L2 WILD-TYPE
  NO               0                6
  YES              8              108

Clustering(13) Variable = LRP1B MUTATION ANALYSIS
D13V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
[1] "hr="     "8.1e+07"
D13V2, continuous
D13V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRP1B MUTATED     10    9
  LRP1B WILD-TYPE   43   59
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  COLON             10              43
  RECTUM             9              59
D13V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRP1B MUTATED      8   11
  LRP1B WILD-TYPE   62   41
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  FEMALE            11              41
  MALE               8              62
D13V5, multiclass
                                clus
vv                               LRP1B MUTATED LRP1B WILD-TYPE
  COLON ADENOCARCINOMA                       6              39
  COLON MUCINOUS ADENOCARCINOMA              4               3
  RECTAL ADENOCARCINOMA                      9              48
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D13V6, multiclass
    clus
vv   LRP1B MUTATED LRP1B WILD-TYPE
  T1             1               5
  T2             3              22
  T3            13              71
  T4             2               4
D13V7, multiclass
    clus
vv   LRP1B MUTATED LRP1B WILD-TYPE
  N0            11              67
  N1             4              18
  N2             4              18
D13V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRP1B MUTATED     18    1
  LRP1B WILD-TYPE   91   11
    clus
vv   LRP1B MUTATED LRP1B WILD-TYPE
  M0            18              91
  M1             1              11
D13V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRP1B MUTATED     19    0
  LRP1B WILD-TYPE   97    6
     clus
vv    LRP1B MUTATED LRP1B WILD-TYPE
  NO              0               6
  YES            19              97

Clustering(14) Variable = KIAA1804 MUTATION ANALYSIS
D14V1, survival
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-A6-2683         TCGA-AA-3518         TCGA-AA-3526 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-A00A 
  "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00Q         TCGA-AA-A00R         TCGA-AA-A00U 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00W         TCGA-AA-A00Z         TCGA-AA-A01F 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01G         TCGA-AA-A01Q         TCGA-AF-2689 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-3400 
  "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3581         TCGA-AG-3582 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" 
        TCGA-AG-3583         TCGA-AG-3587         TCGA-AG-3599 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3726         TCGA-AG-3727         TCGA-AG-3878 
"KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3892         TCGA-AG-3893 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3999         TCGA-AG-4001 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-A002 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" 
        TCGA-AG-A008         TCGA-AG-A00C         TCGA-AG-A00H 
  "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A00Y         TCGA-AG-A011         TCGA-AG-A014 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A015         TCGA-AG-A016         TCGA-AG-A01L 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A01W         TCGA-AG-A01Y         TCGA-AG-A020 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A025         TCGA-AG-A026         TCGA-AG-A02G 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A02N         TCGA-AG-A02X         TCGA-AG-A032 
  "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A036 
"KIAA1804 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-A6-2683         TCGA-AA-3518         TCGA-AA-3526 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-A00A 
  "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00Q         TCGA-AA-A00R         TCGA-AA-A00U 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00W         TCGA-AA-A00Z         TCGA-AA-A01F 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01G         TCGA-AA-A01Q         TCGA-AF-2689 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-3400 
  "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3581         TCGA-AG-3582 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" 
        TCGA-AG-3583         TCGA-AG-3587         TCGA-AG-3599 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3726         TCGA-AG-3727         TCGA-AG-3878 
"KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3892         TCGA-AG-3893 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3999         TCGA-AG-4001 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-A002 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" 
        TCGA-AG-A008         TCGA-AG-A00C         TCGA-AG-A00H 
  "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A00Y         TCGA-AG-A011         TCGA-AG-A014 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A015         TCGA-AG-A016         TCGA-AG-A01L 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A01W         TCGA-AG-A01Y         TCGA-AG-A020 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A025         TCGA-AG-A026         TCGA-AG-A02G 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A02N         TCGA-AG-A02X         TCGA-AG-A032 
  "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A036 
"KIAA1804 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-A6-2683         TCGA-AA-3518         TCGA-AA-3526 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-A00A 
  "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00Q         TCGA-AA-A00R         TCGA-AA-A00U 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00W         TCGA-AA-A00Z         TCGA-AA-A01F 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01G         TCGA-AA-A01Q         TCGA-AF-2689 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-3400 
  "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3581         TCGA-AG-3582 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" 
        TCGA-AG-3583         TCGA-AG-3587         TCGA-AG-3599 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3726         TCGA-AG-3727         TCGA-AG-3878 
"KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3892         TCGA-AG-3893 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3999         TCGA-AG-4001 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-A002 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" 
        TCGA-AG-A008         TCGA-AG-A00C         TCGA-AG-A00H 
  "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A00Y         TCGA-AG-A011         TCGA-AG-A014 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A015         TCGA-AG-A016         TCGA-AG-A01L 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A01W         TCGA-AG-A01Y         TCGA-AG-A020 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A025         TCGA-AG-A026         TCGA-AG-A02G 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A02N         TCGA-AG-A02X         TCGA-AG-A032 
  "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A036 
"KIAA1804 WILD-TYPE" 
[1] "hr="   "8e+07"
D14V2, continuous
D14V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA1804 MUTATED      1    9
  KIAA1804 WILD-TYPE   52   59
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  COLON                 1                 52
  RECTUM                9                 59
D14V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA1804 MUTATED      5    5
  KIAA1804 WILD-TYPE   65   47
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  FEMALE                5                 47
  MALE                  5                 65
D14V5, multiclass
                                clus
vv                               KIAA1804 MUTATED KIAA1804 WILD-TYPE
  COLON ADENOCARCINOMA                          0                 45
  COLON MUCINOUS ADENOCARCINOMA                 1                  6
  RECTAL ADENOCARCINOMA                         8                 49
  RECTAL MUCINOUS ADENOCARCINOMA                1                  7
D14V6, multiclass
    clus
vv   KIAA1804 MUTATED KIAA1804 WILD-TYPE
  T1                1                  5
  T2                2                 23
  T3                7                 77
  T4                0                  6
D14V7, multiclass
    clus
vv   KIAA1804 MUTATED KIAA1804 WILD-TYPE
  N0                7                 71
  N1                2                 20
  N2                1                 21
D14V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA1804 MUTATED      9    1
  KIAA1804 WILD-TYPE  100   11
    clus
vv   KIAA1804 MUTATED KIAA1804 WILD-TYPE
  M0                9                100
  M1                1                 11
D14V9, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA1804 MUTATED     10    0
  KIAA1804 WILD-TYPE  106    6
     clus
vv    KIAA1804 MUTATED KIAA1804 WILD-TYPE
  NO                 0                  6
  YES               10                106

Clustering(15) Variable = KLK2 MUTATION ANALYSIS
D15V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"KLK2 WILD-TYPE"   "KLK2 MUTATED" "KLK2 WILD-TYPE"   "KLK2 MUTATED" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"KLK2 WILD-TYPE"   "KLK2 MUTATED" "KLK2 WILD-TYPE"   "KLK2 MUTATED" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"KLK2 WILD-TYPE"   "KLK2 MUTATED" "KLK2 WILD-TYPE"   "KLK2 MUTATED" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
[1] "Remove cluster labels:" "KLK2 MUTATED"          
clus
  KLK2 MUTATED KLK2 WILD-TYPE 
             2             65 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3562     TCGA-AA-A00D     TCGA-AA-A00E 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00Z     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01Q 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AF-3913     TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3587     TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3894     TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-4008     TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A01Y     TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A02G     TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A036 
"KLK2 WILD-TYPE" 
D15V2, continuous
D15V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  KLK2 MUTATED      3    0
  KLK2 WILD-TYPE   50   68
        clus
vv       KLK2 MUTATED KLK2 WILD-TYPE
  COLON             3             50
  RECTUM            0             68
D15V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  KLK2 MUTATED      2    1
  KLK2 WILD-TYPE   68   51
        clus
vv       KLK2 MUTATED KLK2 WILD-TYPE
  FEMALE            1             51
  MALE              2             68
D15V5, multiclass
                                clus
vv                               KLK2 MUTATED KLK2 WILD-TYPE
  COLON ADENOCARCINOMA                      2             43
  COLON MUCINOUS ADENOCARCINOMA             1              6
  RECTAL ADENOCARCINOMA                     0             57
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D15V6, multiclass
    clus
vv   KLK2 MUTATED KLK2 WILD-TYPE
  T1            0              6
  T2            0             25
  T3            3             81
  T4            0              6
D15V7, multiclass
    clus
vv   KLK2 MUTATED KLK2 WILD-TYPE
  N0            2             76
  N1            0             22
  N2            1             21
D15V8, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  KLK2 MUTATED      3    0
  KLK2 WILD-TYPE  106   12
    clus
vv   KLK2 MUTATED KLK2 WILD-TYPE
  M0            3            106
  M1            0             12
D15V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  KLK2 MUTATED      3    0
  KLK2 WILD-TYPE  113    6
     clus
vv    KLK2 MUTATED KLK2 WILD-TYPE
  NO             0              6
  YES            3            113

Clustering(16) Variable = SMAD2 MUTATION ANALYSIS
D16V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
[1] "hr="     "7.9e+07"
D16V2, continuous
D16V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD2 MUTATED      1    5
  SMAD2 WILD-TYPE   52   63
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  COLON              1              52
  RECTUM             5              63
D16V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD2 MUTATED      3    3
  SMAD2 WILD-TYPE   67   49
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  FEMALE             3              49
  MALE               3              67
D16V5, multiclass
                                clus
vv                               SMAD2 MUTATED SMAD2 WILD-TYPE
  COLON ADENOCARCINOMA                       1              44
  COLON MUCINOUS ADENOCARCINOMA              0               7
  RECTAL ADENOCARCINOMA                      5              52
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D16V6, multiclass
    clus
vv   SMAD2 MUTATED SMAD2 WILD-TYPE
  T1             0               6
  T2             2              23
  T3             4              80
  T4             0               6
D16V7, multiclass
    clus
vv   SMAD2 MUTATED SMAD2 WILD-TYPE
  N0             6              72
  N1             0              22
  N2             0              22
D16V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD2 MUTATED      6    0
  SMAD2 WILD-TYPE  103   12
    clus
vv   SMAD2 MUTATED SMAD2 WILD-TYPE
  M0             6             103
  M1             0              12
D16V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD2 MUTATED      6    0
  SMAD2 WILD-TYPE  110    6
     clus
vv    SMAD2 MUTATED SMAD2 WILD-TYPE
  NO              0               6
  YES             6             110

Clustering(17) Variable = DMD MUTATION ANALYSIS
D17V1, survival
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3562    TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00Q    TCGA-AA-A00R 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A01F    TCGA-AA-A01G 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AF-2689    TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AF-3913    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-3599    TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-3892    TCGA-AG-3893    TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A025    TCGA-AG-A026    TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A032    TCGA-AG-A036 
  "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3562    TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00Q    TCGA-AA-A00R 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A01F    TCGA-AA-A01G 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AF-2689    TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AF-3913    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-3599    TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-3892    TCGA-AG-3893    TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A025    TCGA-AG-A026    TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A032    TCGA-AG-A036 
  "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3562    TCGA-AA-A00A    TCGA-AA-A00D    TCGA-AA-A00E    TCGA-AA-A00F 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L    TCGA-AA-A00Q    TCGA-AA-A00R 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00U    TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A01F    TCGA-AA-A01G 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AF-2689    TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AF-3913    TCGA-AG-3581    TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-3599    TCGA-AG-3726    TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-3892    TCGA-AG-3893    TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A025    TCGA-AG-A026    TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A032    TCGA-AG-A036 
  "DMD MUTATED" "DMD WILD-TYPE" 
[1] "hr=" "2.7"
D17V2, continuous
D17V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  DMD MUTATED     10    6
  DMD WILD-TYPE   43   62
        clus
vv       DMD MUTATED DMD WILD-TYPE
  COLON           10            43
  RECTUM           6            62
D17V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  DMD MUTATED      7    9
  DMD WILD-TYPE   63   43
        clus
vv       DMD MUTATED DMD WILD-TYPE
  FEMALE           9            43
  MALE             7            63
D17V5, multiclass
                                clus
vv                               DMD MUTATED DMD WILD-TYPE
  COLON ADENOCARCINOMA                     7            38
  COLON MUCINOUS ADENOCARCINOMA            3             4
  RECTAL ADENOCARCINOMA                    6            51
  RECTAL MUCINOUS ADENOCARCINOMA           0             8
D17V6, multiclass
    clus
vv   DMD MUTATED DMD WILD-TYPE
  T1           1             5
  T2           2            23
  T3          11            73
  T4           1             5
D17V7, multiclass
    clus
vv   DMD MUTATED DMD WILD-TYPE
  N0           7            71
  N1           6            16
  N2           3            19
D17V8, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  DMD MUTATED     14    2
  DMD WILD-TYPE   95   10
    clus
vv   DMD MUTATED DMD WILD-TYPE
  M0          14            95
  M1           2            10
D17V9, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  DMD MUTATED     15    1
  DMD WILD-TYPE  101    5
     clus
vv    DMD MUTATED DMD WILD-TYPE
  NO            1             5
  YES          15           101

Clustering(18) Variable = CSMD3 MUTATION ANALYSIS
D18V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
[1] "hr="     "2.7e+08"
D18V2, continuous
D18V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CSMD3 MUTATED      8    9
  CSMD3 WILD-TYPE   45   59
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  COLON              8              45
  RECTUM             9              59
D18V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CSMD3 MUTATED      9    8
  CSMD3 WILD-TYPE   61   44
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  FEMALE             8              44
  MALE               9              61
D18V5, multiclass
                                clus
vv                               CSMD3 MUTATED CSMD3 WILD-TYPE
  COLON ADENOCARCINOMA                       4              41
  COLON MUCINOUS ADENOCARCINOMA              4               3
  RECTAL ADENOCARCINOMA                      9              48
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D18V6, multiclass
    clus
vv   CSMD3 MUTATED CSMD3 WILD-TYPE
  T1             1               5
  T2             1              24
  T3            12              72
  T4             2               4
D18V7, multiclass
    clus
vv   CSMD3 MUTATED CSMD3 WILD-TYPE
  N0            12              66
  N1             3              19
  N2             2              20
D18V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CSMD3 MUTATED     16    1
  CSMD3 WILD-TYPE   93   11
    clus
vv   CSMD3 MUTATED CSMD3 WILD-TYPE
  M0            16              93
  M1             1              11
D18V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CSMD3 MUTATED     16    1
  CSMD3 WILD-TYPE  100    5
     clus
vv    CSMD3 MUTATED CSMD3 WILD-TYPE
  NO              1               5
  YES            16             100

Clustering(19) Variable = BAI3 MUTATION ANALYSIS
D19V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
  "BAI3 MUTATED"   "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
  "BAI3 MUTATED"   "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
  "BAI3 MUTATED"   "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
[1] "hr="   "8e+07"
D19V2, continuous
D19V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BAI3 MUTATED      5    6
  BAI3 WILD-TYPE   48   62
        clus
vv       BAI3 MUTATED BAI3 WILD-TYPE
  COLON             5             48
  RECTUM            6             62
D19V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BAI3 MUTATED      6    5
  BAI3 WILD-TYPE   64   47
        clus
vv       BAI3 MUTATED BAI3 WILD-TYPE
  FEMALE            5             47
  MALE              6             64
D19V5, multiclass
                                clus
vv                               BAI3 MUTATED BAI3 WILD-TYPE
  COLON ADENOCARCINOMA                      3             42
  COLON MUCINOUS ADENOCARCINOMA             2              5
  RECTAL ADENOCARCINOMA                     6             51
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D19V6, multiclass
    clus
vv   BAI3 MUTATED BAI3 WILD-TYPE
  T1            1              5
  T2            3             22
  T3            7             77
  T4            0              6
D19V7, multiclass
    clus
vv   BAI3 MUTATED BAI3 WILD-TYPE
  N0           10             68
  N1            1             21
  N2            0             22
D19V8, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BAI3 MUTATED     11    0
  BAI3 WILD-TYPE   98   12
    clus
vv   BAI3 MUTATED BAI3 WILD-TYPE
  M0           11             98
  M1            0             12
D19V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BAI3 MUTATED     11    0
  BAI3 WILD-TYPE  105    6
     clus
vv    BAI3 MUTATED BAI3 WILD-TYPE
  NO             0              6
  YES           11            105

Clustering(20) Variable = WBSCR17 MUTATION ANALYSIS
D20V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-AA-3518 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-A00A 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00Q        TCGA-AA-A00R 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A01F 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01Q        TCGA-AF-2689        TCGA-AF-2691 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3581 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587        TCGA-AG-3599 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3887 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3999 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-A002 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" 
       TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H        TCGA-AG-A00Y 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015        TCGA-AG-A016 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02N 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-AA-3518 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-A00A 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00Q        TCGA-AA-A00R 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A01F 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01Q        TCGA-AF-2689        TCGA-AF-2691 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3581 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587        TCGA-AG-3599 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3887 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3999 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-A002 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" 
       TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H        TCGA-AG-A00Y 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015        TCGA-AG-A016 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02N 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-AA-3518 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-A00A 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00Q        TCGA-AA-A00R 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A01F 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01Q        TCGA-AF-2689        TCGA-AF-2691 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3581 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587        TCGA-AG-3599 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3887 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3999 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-A002 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" 
       TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H        TCGA-AG-A00Y 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015        TCGA-AG-A016 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02N 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
[1] "hr="     "9200000"
D20V2, continuous
D20V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  WBSCR17 MUTATED      6    2
  WBSCR17 WILD-TYPE   47   66
        clus
vv       WBSCR17 MUTATED WBSCR17 WILD-TYPE
  COLON                6                47
  RECTUM               2                66
D20V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  WBSCR17 MUTATED      6    2
  WBSCR17 WILD-TYPE   64   50
        clus
vv       WBSCR17 MUTATED WBSCR17 WILD-TYPE
  FEMALE               2                50
  MALE                 6                64
D20V5, multiclass
                                clus
vv                               WBSCR17 MUTATED WBSCR17 WILD-TYPE
  COLON ADENOCARCINOMA                         6                39
  COLON MUCINOUS ADENOCARCINOMA                0                 7
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D20V6, multiclass
    clus
vv   WBSCR17 MUTATED WBSCR17 WILD-TYPE
  T1               0                 6
  T2               1                24
  T3               7                77
  T4               0                 6
D20V7, multiclass
    clus
vv   WBSCR17 MUTATED WBSCR17 WILD-TYPE
  N0               5                73
  N1               1                21
  N2               2                20
D20V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  WBSCR17 MUTATED      8    0
  WBSCR17 WILD-TYPE  101   12
    clus
vv   WBSCR17 MUTATED WBSCR17 WILD-TYPE
  M0               8               101
  M1               0                12
D20V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  WBSCR17 MUTATED      8    0
  WBSCR17 WILD-TYPE  108    6
     clus
vv    WBSCR17 MUTATED WBSCR17 WILD-TYPE
  NO                0                 6
  YES               8               108

Clustering(21) Variable = EVC2 MUTATION ANALYSIS
D21V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
[1] "hr="     "7.4e+07"
D21V2, continuous
D21V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  EVC2 MUTATED      7    4
  EVC2 WILD-TYPE   46   64
        clus
vv       EVC2 MUTATED EVC2 WILD-TYPE
  COLON             7             46
  RECTUM            4             64
D21V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  EVC2 MUTATED      6    5
  EVC2 WILD-TYPE   64   47
        clus
vv       EVC2 MUTATED EVC2 WILD-TYPE
  FEMALE            5             47
  MALE              6             64
D21V5, multiclass
                                clus
vv                               EVC2 MUTATED EVC2 WILD-TYPE
  COLON ADENOCARCINOMA                      6             39
  COLON MUCINOUS ADENOCARCINOMA             1              6
  RECTAL ADENOCARCINOMA                     3             54
  RECTAL MUCINOUS ADENOCARCINOMA            1              7
D21V6, multiclass
    clus
vv   EVC2 MUTATED EVC2 WILD-TYPE
  T1            0              6
  T2            1             24
  T3            9             75
  T4            1              5
D21V7, multiclass
    clus
vv   EVC2 MUTATED EVC2 WILD-TYPE
  N0            9             69
  N1            1             21
  N2            1             21
D21V8, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  EVC2 MUTATED     10    1
  EVC2 WILD-TYPE   99   11
    clus
vv   EVC2 MUTATED EVC2 WILD-TYPE
  M0           10             99
  M1            1             11
D21V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  EVC2 MUTATED     10    1
  EVC2 WILD-TYPE  106    5
     clus
vv    EVC2 MUTATED EVC2 WILD-TYPE
  NO             1              5
  YES           10            106

Clustering(22) Variable = LIFR MUTATION ANALYSIS
D22V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
  "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
  "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
  "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
[1] "hr=" "9.9"
D22V2, continuous
D22V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  LIFR MUTATED      5    5
  LIFR WILD-TYPE   48   63
        clus
vv       LIFR MUTATED LIFR WILD-TYPE
  COLON             5             48
  RECTUM            5             63
D22V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  LIFR MUTATED      7    3
  LIFR WILD-TYPE   63   49
        clus
vv       LIFR MUTATED LIFR WILD-TYPE
  FEMALE            3             49
  MALE              7             63
D22V5, multiclass
                                clus
vv                               LIFR MUTATED LIFR WILD-TYPE
  COLON ADENOCARCINOMA                      3             42
  COLON MUCINOUS ADENOCARCINOMA             2              5
  RECTAL ADENOCARCINOMA                     5             52
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D22V6, multiclass
    clus
vv   LIFR MUTATED LIFR WILD-TYPE
  T1            0              6
  T2            2             23
  T3            7             77
  T4            1              5
D22V7, multiclass
    clus
vv   LIFR MUTATED LIFR WILD-TYPE
  N0            5             73
  N1            3             19
  N2            2             20
D22V8, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  LIFR MUTATED      8    1
  LIFR WILD-TYPE  101   11
    clus
vv   LIFR MUTATED LIFR WILD-TYPE
  M0            8            101
  M1            1             11
D22V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  LIFR MUTATED     10    0
  LIFR WILD-TYPE  106    6
     clus
vv    LIFR MUTATED LIFR WILD-TYPE
  NO             0              6
  YES           10            106

Clustering(23) Variable = OPCML MUTATION ANALYSIS
D23V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
  "OPCML MUTATED" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE"   "OPCML MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "OPCML MUTATED"   "OPCML MUTATED" "OPCML WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
  "OPCML MUTATED" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE"   "OPCML MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "OPCML MUTATED"   "OPCML MUTATED" "OPCML WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
  "OPCML MUTATED" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE"   "OPCML MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "OPCML MUTATED"   "OPCML MUTATED" "OPCML WILD-TYPE" 
[1] "hr="     "7.9e+07"
D23V2, continuous
D23V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OPCML MUTATED      0    6
  OPCML WILD-TYPE   53   62
        clus
vv       OPCML MUTATED OPCML WILD-TYPE
  COLON              0              53
  RECTUM             6              62
D23V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OPCML MUTATED      4    2
  OPCML WILD-TYPE   66   50
        clus
vv       OPCML MUTATED OPCML WILD-TYPE
  FEMALE             2              50
  MALE               4              66
D23V5, multiclass
                                clus
vv                               OPCML MUTATED OPCML WILD-TYPE
  COLON ADENOCARCINOMA                       0              45
  COLON MUCINOUS ADENOCARCINOMA              0               7
  RECTAL ADENOCARCINOMA                      6              51
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D23V6, multiclass
    clus
vv   OPCML MUTATED OPCML WILD-TYPE
  T1             0               6
  T2             3              22
  T3             3              81
  T4             0               6
D23V7, multiclass
    clus
vv   OPCML MUTATED OPCML WILD-TYPE
  N0             4              74
  N1             1              21
  N2             1              21
D23V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OPCML MUTATED      5    1
  OPCML WILD-TYPE  104   11
    clus
vv   OPCML MUTATED OPCML WILD-TYPE
  M0             5             104
  M1             1              11
D23V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OPCML MUTATED      6    0
  OPCML WILD-TYPE  110    6
     clus
vv    OPCML MUTATED OPCML WILD-TYPE
  NO              0               6
  YES             6             110

Clustering(24) Variable = CDC27 MUTATION ANALYSIS
D24V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE"   "CDC27 MUTATED" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"CDC27 WILD-TYPE"   "CDC27 MUTATED" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"CDC27 WILD-TYPE"   "CDC27 MUTATED" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"CDC27 WILD-TYPE"   "CDC27 MUTATED" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "CDC27 MUTATED" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE"   "CDC27 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE"   "CDC27 MUTATED" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"CDC27 WILD-TYPE"   "CDC27 MUTATED" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"CDC27 WILD-TYPE"   "CDC27 MUTATED" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"CDC27 WILD-TYPE"   "CDC27 MUTATED" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "CDC27 MUTATED" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE"   "CDC27 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE"   "CDC27 MUTATED" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"CDC27 WILD-TYPE"   "CDC27 MUTATED" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"CDC27 WILD-TYPE"   "CDC27 MUTATED" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"CDC27 WILD-TYPE"   "CDC27 MUTATED" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "CDC27 MUTATED" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE"   "CDC27 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D24V2, continuous
D24V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDC27 MUTATED      4    2
  CDC27 WILD-TYPE   49   66
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  COLON              4              49
  RECTUM             2              66
D24V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDC27 MUTATED      2    4
  CDC27 WILD-TYPE   68   48
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  FEMALE             4              48
  MALE               2              68
D24V5, multiclass
                                clus
vv                               CDC27 MUTATED CDC27 WILD-TYPE
  COLON ADENOCARCINOMA                       3              42
  COLON MUCINOUS ADENOCARCINOMA              1               6
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D24V6, multiclass
    clus
vv   CDC27 MUTATED CDC27 WILD-TYPE
  T1             1               5
  T2             1              24
  T3             4              80
  T4             0               6
D24V7, multiclass
    clus
vv   CDC27 MUTATED CDC27 WILD-TYPE
  N0             6              72
  N1             0              22
  N2             0              22
D24V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDC27 MUTATED      6    0
  CDC27 WILD-TYPE  103   12
    clus
vv   CDC27 MUTATED CDC27 WILD-TYPE
  M0             6             103
  M1             0              12
D24V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDC27 MUTATED      6    0
  CDC27 WILD-TYPE  110    6
     clus
vv    CDC27 MUTATED CDC27 WILD-TYPE
  NO              0               6
  YES             6             110

Clustering(25) Variable = TUSC3 MUTATION ANALYSIS
D25V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
[1] "hr="     "7.4e+07"
D25V2, continuous
D25V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TUSC3 MUTATED      3    2
  TUSC3 WILD-TYPE   50   66
        clus
vv       TUSC3 MUTATED TUSC3 WILD-TYPE
  COLON              3              50
  RECTUM             2              66
D25V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TUSC3 MUTATED      3    2
  TUSC3 WILD-TYPE   67   50
        clus
vv       TUSC3 MUTATED TUSC3 WILD-TYPE
  FEMALE             2              50
  MALE               3              67
D25V5, multiclass
                                clus
vv                               TUSC3 MUTATED TUSC3 WILD-TYPE
  COLON ADENOCARCINOMA                       2              43
  COLON MUCINOUS ADENOCARCINOMA              1               6
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D25V6, multiclass
    clus
vv   TUSC3 MUTATED TUSC3 WILD-TYPE
  T1             0               6
  T2             2              23
  T3             2              82
  T4             0               6
D25V7, multiclass
    clus
vv   TUSC3 MUTATED TUSC3 WILD-TYPE
  N0             4              74
  N1             0              22
  N2             1              21
D25V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TUSC3 MUTATED      5    0
  TUSC3 WILD-TYPE  104   12
    clus
vv   TUSC3 MUTATED TUSC3 WILD-TYPE
  M0             5             104
  M1             0              12
D25V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TUSC3 MUTATED      4    1
  TUSC3 WILD-TYPE  112    5
     clus
vv    TUSC3 MUTATED TUSC3 WILD-TYPE
  NO              1               5
  YES             4             112

Clustering(26) Variable = ATP10A MUTATION ANALYSIS
D26V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE"   "ATP10A MUTATED" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE"   "ATP10A MUTATED" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE"   "ATP10A MUTATED" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE"   "ATP10A MUTATED" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE"   "ATP10A MUTATED" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE"   "ATP10A MUTATED" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE"   "ATP10A MUTATED" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE"   "ATP10A MUTATED" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE"   "ATP10A MUTATED" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
[1] "hr="   "8e+07"
D26V2, continuous
D26V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ATP10A MUTATED      3    6
  ATP10A WILD-TYPE   50   62
        clus
vv       ATP10A MUTATED ATP10A WILD-TYPE
  COLON               3               50
  RECTUM              6               62
D26V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ATP10A MUTATED      5    4
  ATP10A WILD-TYPE   65   48
        clus
vv       ATP10A MUTATED ATP10A WILD-TYPE
  FEMALE              4               48
  MALE                5               65
D26V5, multiclass
                                clus
vv                               ATP10A MUTATED ATP10A WILD-TYPE
  COLON ADENOCARCINOMA                        2               43
  COLON MUCINOUS ADENOCARCINOMA               1                6
  RECTAL ADENOCARCINOMA                       5               52
  RECTAL MUCINOUS ADENOCARCINOMA              1                7
D26V6, multiclass
    clus
vv   ATP10A MUTATED ATP10A WILD-TYPE
  T1              0                6
  T2              1               24
  T3              7               77
  T4              1                5
D26V7, multiclass
    clus
vv   ATP10A MUTATED ATP10A WILD-TYPE
  N0              8               70
  N1              1               21
  N2              0               22
D26V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ATP10A MUTATED      9    0
  ATP10A WILD-TYPE  100   12
    clus
vv   ATP10A MUTATED ATP10A WILD-TYPE
  M0              9              100
  M1              0               12
D26V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ATP10A MUTATED      9    0
  ATP10A WILD-TYPE  107    6
     clus
vv    ATP10A MUTATED ATP10A WILD-TYPE
  NO               0                6
  YES              9              107

Clustering(27) Variable = FAT4 MUTATION ANALYSIS
D27V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED"   "FAT4 MUTATED" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
  "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED"   "FAT4 MUTATED" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
  "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED"   "FAT4 MUTATED" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
  "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
[1] "hr="     "7.4e+07"
D27V2, continuous
D27V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FAT4 MUTATED      5   10
  FAT4 WILD-TYPE   48   58
        clus
vv       FAT4 MUTATED FAT4 WILD-TYPE
  COLON             5             48
  RECTUM           10             58
D27V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FAT4 MUTATED      9    6
  FAT4 WILD-TYPE   61   46
        clus
vv       FAT4 MUTATED FAT4 WILD-TYPE
  FEMALE            6             46
  MALE              9             61
D27V5, multiclass
                                clus
vv                               FAT4 MUTATED FAT4 WILD-TYPE
  COLON ADENOCARCINOMA                      4             41
  COLON MUCINOUS ADENOCARCINOMA             1              6
  RECTAL ADENOCARCINOMA                     9             48
  RECTAL MUCINOUS ADENOCARCINOMA            1              7
D27V6, multiclass
    clus
vv   FAT4 MUTATED FAT4 WILD-TYPE
  T1            2              4
  T2            4             21
  T3            8             76
  T4            0              6
D27V7, multiclass
    clus
vv   FAT4 MUTATED FAT4 WILD-TYPE
  N0           12             66
  N1            2             20
  N2            1             21
D27V8, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FAT4 MUTATED     15    0
  FAT4 WILD-TYPE   94   12
    clus
vv   FAT4 MUTATED FAT4 WILD-TYPE
  M0           15             94
  M1            0             12
D27V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FAT4 MUTATED     14    1
  FAT4 WILD-TYPE  102    5
     clus
vv    FAT4 MUTATED FAT4 WILD-TYPE
  NO             1              5
  YES           14            102

Clustering(28) Variable = MAPK10 MUTATION ANALYSIS
D28V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE"   "MAPK10 MUTATED" "MAPK10 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
  "MAPK10 MUTATED" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
  "MAPK10 MUTATED" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE"   "MAPK10 MUTATED" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE"   "MAPK10 MUTATED" "MAPK10 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
  "MAPK10 MUTATED" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
  "MAPK10 MUTATED" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE"   "MAPK10 MUTATED" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE"   "MAPK10 MUTATED" "MAPK10 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
  "MAPK10 MUTATED" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
  "MAPK10 MUTATED" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE"   "MAPK10 MUTATED" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
[1] "hr="     "7.4e+07"
D28V2, continuous
D28V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAPK10 MUTATED      2    4
  MAPK10 WILD-TYPE   51   64
        clus
vv       MAPK10 MUTATED MAPK10 WILD-TYPE
  COLON               2               51
  RECTUM              4               64
D28V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAPK10 MUTATED      4    2
  MAPK10 WILD-TYPE   66   50
        clus
vv       MAPK10 MUTATED MAPK10 WILD-TYPE
  FEMALE              2               50
  MALE                4               66
D28V5, multiclass
                                clus
vv                               MAPK10 MUTATED MAPK10 WILD-TYPE
  COLON ADENOCARCINOMA                        2               43
  COLON MUCINOUS ADENOCARCINOMA               0                7
  RECTAL ADENOCARCINOMA                       4               53
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D28V6, multiclass
    clus
vv   MAPK10 MUTATED MAPK10 WILD-TYPE
  T1              1                5
  T2              2               23
  T3              2               82
  T4              1                5
D28V7, multiclass
    clus
vv   MAPK10 MUTATED MAPK10 WILD-TYPE
  N0              4               74
  N1              0               22
  N2              2               20
D28V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAPK10 MUTATED      3    3
  MAPK10 WILD-TYPE  106    9
    clus
vv   MAPK10 MUTATED MAPK10 WILD-TYPE
  M0              3              106
  M1              3                9
D28V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAPK10 MUTATED      5    1
  MAPK10 WILD-TYPE  111    5
     clus
vv    MAPK10 MUTATED MAPK10 WILD-TYPE
  NO               1                5
  YES              5              111

Clustering(29) Variable = SYNE1 MUTATION ANALYSIS
D29V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED"   "SYNE1 MUTATED" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED"   "SYNE1 MUTATED" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED"   "SYNE1 MUTATED" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
[1] "hr="     "3.6e+08"
D29V2, continuous
D29V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SYNE1 MUTATED     15   10
  SYNE1 WILD-TYPE   38   58
        clus
vv       SYNE1 MUTATED SYNE1 WILD-TYPE
  COLON             15              38
  RECTUM            10              58
D29V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SYNE1 MUTATED     13   12
  SYNE1 WILD-TYPE   57   40
        clus
vv       SYNE1 MUTATED SYNE1 WILD-TYPE
  FEMALE            12              40
  MALE              13              57
D29V5, multiclass
                                clus
vv                               SYNE1 MUTATED SYNE1 WILD-TYPE
  COLON ADENOCARCINOMA                      11              34
  COLON MUCINOUS ADENOCARCINOMA              4               3
  RECTAL ADENOCARCINOMA                      9              48
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D29V6, multiclass
    clus
vv   SYNE1 MUTATED SYNE1 WILD-TYPE
  T1             4               2
  T2             3              22
  T3            15              69
  T4             2               4
D29V7, multiclass
    clus
vv   SYNE1 MUTATED SYNE1 WILD-TYPE
  N0            17              61
  N1             4              18
  N2             4              18
D29V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SYNE1 MUTATED     23    1
  SYNE1 WILD-TYPE   86   11
    clus
vv   SYNE1 MUTATED SYNE1 WILD-TYPE
  M0            23              86
  M1             1              11
D29V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SYNE1 MUTATED     22    3
  SYNE1 WILD-TYPE   94    3
     clus
vv    SYNE1 MUTATED SYNE1 WILD-TYPE
  NO              3               3
  YES            22              94

Clustering(30) Variable = GPC6 MUTATION ANALYSIS
D30V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE"   "GPC6 MUTATED" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
  "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE"   "GPC6 MUTATED" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE"   "GPC6 MUTATED" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
  "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE"   "GPC6 MUTATED" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE"   "GPC6 MUTATED" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
  "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE"   "GPC6 MUTATED" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GPC6 MUTATED      4    3
  GPC6 WILD-TYPE   49   65
        clus
vv       GPC6 MUTATED GPC6 WILD-TYPE
  COLON             4             49
  RECTUM            3             65
D30V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GPC6 MUTATED      4    3
  GPC6 WILD-TYPE   66   49
        clus
vv       GPC6 MUTATED GPC6 WILD-TYPE
  FEMALE            3             49
  MALE              4             66
D30V5, multiclass
                                clus
vv                               GPC6 MUTATED GPC6 WILD-TYPE
  COLON ADENOCARCINOMA                      3             42
  COLON MUCINOUS ADENOCARCINOMA             1              6
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D30V6, multiclass
    clus
vv   GPC6 MUTATED GPC6 WILD-TYPE
  T1            0              6
  T2            1             24
  T3            4             80
  T4            2              4
D30V7, multiclass
    clus
vv   GPC6 MUTATED GPC6 WILD-TYPE
  N0            4             74
  N1            2             20
  N2            1             21
D30V8, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GPC6 MUTATED      6    1
  GPC6 WILD-TYPE  103   11
    clus
vv   GPC6 MUTATED GPC6 WILD-TYPE
  M0            6            103
  M1            1             11
D30V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GPC6 MUTATED      7    0
  GPC6 WILD-TYPE  109    6
     clus
vv    GPC6 MUTATED GPC6 WILD-TYPE
  NO             0              6
  YES            7            109

Clustering(31) Variable = FAT2 MUTATION ANALYSIS
D31V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
[1] "hr="   "8e+07"
D31V2, continuous
D31V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FAT2 MUTATED      6    7
  FAT2 WILD-TYPE   47   61
        clus
vv       FAT2 MUTATED FAT2 WILD-TYPE
  COLON             6             47
  RECTUM            7             61
D31V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FAT2 MUTATED      5    8
  FAT2 WILD-TYPE   65   44
        clus
vv       FAT2 MUTATED FAT2 WILD-TYPE
  FEMALE            8             44
  MALE              5             65
D31V5, multiclass
                                clus
vv                               FAT2 MUTATED FAT2 WILD-TYPE
  COLON ADENOCARCINOMA                      3             42
  COLON MUCINOUS ADENOCARCINOMA             3              4
  RECTAL ADENOCARCINOMA                     7             50
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D31V6, multiclass
    clus
vv   FAT2 MUTATED FAT2 WILD-TYPE
  T1            1              5
  T2            2             23
  T3            9             75
  T4            0              6
D31V7, multiclass
    clus
vv   FAT2 MUTATED FAT2 WILD-TYPE
  N0            9             69
  N1            2             20
  N2            2             20
D31V8, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FAT2 MUTATED     13    0
  FAT2 WILD-TYPE   96   12
    clus
vv   FAT2 MUTATED FAT2 WILD-TYPE
  M0           13             96
  M1            0             12
D31V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FAT2 MUTATED     12    1
  FAT2 WILD-TYPE  104    5
     clus
vv    FAT2 MUTATED FAT2 WILD-TYPE
  NO             1              5
  YES           12            104

Clustering(32) Variable = CDH9 MUTATION ANALYSIS
D32V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
[1] "hr=" "9.9"
D32V2, continuous
D32V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH9 MUTATED      3    5
  CDH9 WILD-TYPE   50   63
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  COLON             3             50
  RECTUM            5             63
D32V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH9 MUTATED      6    2
  CDH9 WILD-TYPE   64   50
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  FEMALE            2             50
  MALE              6             64
D32V5, multiclass
                                clus
vv                               CDH9 MUTATED CDH9 WILD-TYPE
  COLON ADENOCARCINOMA                      3             42
  COLON MUCINOUS ADENOCARCINOMA             0              7
  RECTAL ADENOCARCINOMA                     5             52
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D32V6, multiclass
    clus
vv   CDH9 MUTATED CDH9 WILD-TYPE
  T1            1              5
  T2            1             24
  T3            6             78
  T4            0              6
D32V7, multiclass
    clus
vv   CDH9 MUTATED CDH9 WILD-TYPE
  N0            7             71
  N1            1             21
  N2            0             22
D32V8, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH9 MUTATED      7    1
  CDH9 WILD-TYPE  102   11
    clus
vv   CDH9 MUTATED CDH9 WILD-TYPE
  M0            7            102
  M1            1             11
D32V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH9 MUTATED      8    0
  CDH9 WILD-TYPE  108    6
     clus
vv    CDH9 MUTATED CDH9 WILD-TYPE
  NO             0              6
  YES            8            108

Clustering(33) Variable = PIK3R1 MUTATION ANALYSIS
D33V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
[1] "hr="     "7.9e+07"
D33V2, continuous
D33V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3R1 MUTATED      1    4
  PIK3R1 WILD-TYPE   52   64
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  COLON               1               52
  RECTUM              4               64
D33V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3R1 MUTATED      2    3
  PIK3R1 WILD-TYPE   68   49
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  FEMALE              3               49
  MALE                2               68
D33V5, multiclass
                                clus
vv                               PIK3R1 MUTATED PIK3R1 WILD-TYPE
  COLON ADENOCARCINOMA                        1               44
  COLON MUCINOUS ADENOCARCINOMA               0                7
  RECTAL ADENOCARCINOMA                       4               53
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D33V6, multiclass
    clus
vv   PIK3R1 MUTATED PIK3R1 WILD-TYPE
  T1              2                4
  T2              2               23
  T3              1               83
  T4              0                6
D33V7, multiclass
    clus
vv   PIK3R1 MUTATED PIK3R1 WILD-TYPE
  N0              4               74
  N1              0               22
  N2              1               21
D33V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3R1 MUTATED      5    0
  PIK3R1 WILD-TYPE  104   12
    clus
vv   PIK3R1 MUTATED PIK3R1 WILD-TYPE
  M0              5              104
  M1              0               12
D33V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3R1 MUTATED      5    0
  PIK3R1 WILD-TYPE  111    6
     clus
vv    PIK3R1 MUTATED PIK3R1 WILD-TYPE
  NO               0                6
  YES              5              111

Clustering(34) Variable = C3ORF30 MUTATION ANALYSIS
D34V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-AA-3518 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-A00A 
  "C3ORF30 MUTATED" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00Q        TCGA-AA-A00R 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A01F 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01Q        TCGA-AF-2689        TCGA-AF-2691 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3581 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587        TCGA-AG-3599 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3887 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3999 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-A002 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H        TCGA-AG-A00Y 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015        TCGA-AG-A016 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02N 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-AA-3518 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-A00A 
  "C3ORF30 MUTATED" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00Q        TCGA-AA-A00R 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A01F 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01Q        TCGA-AF-2689        TCGA-AF-2691 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3581 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587        TCGA-AG-3599 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3887 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3999 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-A002 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H        TCGA-AG-A00Y 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015        TCGA-AG-A016 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02N 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-AA-3518 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-A00A 
  "C3ORF30 MUTATED" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00Q        TCGA-AA-A00R 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A01F 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01Q        TCGA-AF-2689        TCGA-AF-2691 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3581 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587        TCGA-AG-3599 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3887 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3999 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-A002 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H        TCGA-AG-A00Y 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015        TCGA-AG-A016 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02N 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
[1] "Remove cluster labels:" "C3ORF30 MUTATED"       
clus
  C3ORF30 MUTATED C3ORF30 WILD-TYPE 
                1                66 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-AA-3518 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-A00A        TCGA-AA-A00D 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A01F        TCGA-AA-A01G 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AF-2689        TCGA-AF-2691        TCGA-AF-2692 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3581        TCGA-AG-3582 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AG-3583        TCGA-AG-3587        TCGA-AG-3599        TCGA-AG-3726 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3887        TCGA-AG-3892 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3999        TCGA-AG-4001 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-A002        TCGA-AG-A008 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AG-A00C        TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AG-A014        TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020        TCGA-AG-A025 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02N        TCGA-AG-A02X 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
       TCGA-AG-A032        TCGA-AG-A036 
"C3ORF30 WILD-TYPE" "C3ORF30 WILD-TYPE" 
D34V2, continuous
D34V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C3ORF30 MUTATED      2    1
  C3ORF30 WILD-TYPE   51   67
        clus
vv       C3ORF30 MUTATED C3ORF30 WILD-TYPE
  COLON                2                51
  RECTUM               1                67
D34V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C3ORF30 MUTATED      2    1
  C3ORF30 WILD-TYPE   68   51
        clus
vv       C3ORF30 MUTATED C3ORF30 WILD-TYPE
  FEMALE               1                51
  MALE                 2                68
D34V5, multiclass
                                clus
vv                               C3ORF30 MUTATED C3ORF30 WILD-TYPE
  COLON ADENOCARCINOMA                         2                43
  COLON MUCINOUS ADENOCARCINOMA                0                 7
  RECTAL ADENOCARCINOMA                        1                56
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D34V6, multiclass
    clus
vv   C3ORF30 MUTATED C3ORF30 WILD-TYPE
  T1               0                 6
  T2               1                24
  T3               2                82
  T4               0                 6
D34V7, multiclass
    clus
vv   C3ORF30 MUTATED C3ORF30 WILD-TYPE
  N0               3                75
  N1               0                22
  N2               0                22
D34V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C3ORF30 MUTATED      3    0
  C3ORF30 WILD-TYPE  106   12
    clus
vv   C3ORF30 MUTATED C3ORF30 WILD-TYPE
  M0               3               106
  M1               0                12
D34V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C3ORF30 MUTATED      3    0
  C3ORF30 WILD-TYPE  113    6
     clus
vv    C3ORF30 MUTATED C3ORF30 WILD-TYPE
  NO                0                 6
  YES               3               113

Clustering(35) Variable = HCLS1 MUTATION ANALYSIS
D35V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE"   "HCLS1 MUTATED" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE"   "HCLS1 MUTATED" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
  "HCLS1 MUTATED" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE"   "HCLS1 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE"   "HCLS1 MUTATED" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE"   "HCLS1 MUTATED" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
  "HCLS1 MUTATED" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE"   "HCLS1 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE"   "HCLS1 MUTATED" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE"   "HCLS1 MUTATED" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
  "HCLS1 MUTATED" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE"   "HCLS1 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" "HCLS1 WILD-TYPE" 
[1] "hr="     "7.4e+07"
D35V2, continuous
D35V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HCLS1 MUTATED      5    1
  HCLS1 WILD-TYPE   48   67
        clus
vv       HCLS1 MUTATED HCLS1 WILD-TYPE
  COLON              5              48
  RECTUM             1              67
D35V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HCLS1 MUTATED      3    3
  HCLS1 WILD-TYPE   67   49
        clus
vv       HCLS1 MUTATED HCLS1 WILD-TYPE
  FEMALE             3              49
  MALE               3              67
D35V5, multiclass
                                clus
vv                               HCLS1 MUTATED HCLS1 WILD-TYPE
  COLON ADENOCARCINOMA                       3              42
  COLON MUCINOUS ADENOCARCINOMA              2               5
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D35V6, multiclass
    clus
vv   HCLS1 MUTATED HCLS1 WILD-TYPE
  T1             0               6
  T2             1              24
  T3             4              80
  T4             1               5
D35V7, multiclass
    clus
vv   HCLS1 MUTATED HCLS1 WILD-TYPE
  N0             3              75
  N1             1              21
  N2             2              20
D35V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HCLS1 MUTATED      6    0
  HCLS1 WILD-TYPE  103   12
    clus
vv   HCLS1 MUTATED HCLS1 WILD-TYPE
  M0             6             103
  M1             0              12
D35V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HCLS1 MUTATED      6    0
  HCLS1 WILD-TYPE  110    6
     clus
vv    HCLS1 MUTATED HCLS1 WILD-TYPE
  NO              0               6
  YES             6             110

Clustering(36) Variable = IL1RAPL2 MUTATION ANALYSIS
D36V1, survival
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-A6-2683         TCGA-AA-3518         TCGA-AA-3526 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-A00A 
  "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00Q         TCGA-AA-A00R         TCGA-AA-A00U 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00W         TCGA-AA-A00Z         TCGA-AA-A01F 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01G         TCGA-AA-A01Q         TCGA-AF-2689 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-3400 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3581         TCGA-AG-3582 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3587         TCGA-AG-3599 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-3726         TCGA-AG-3727         TCGA-AG-3878 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3892         TCGA-AG-3893 
  "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3999         TCGA-AG-4001 
  "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-A002 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" 
        TCGA-AG-A008         TCGA-AG-A00C         TCGA-AG-A00H 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A00Y         TCGA-AG-A011         TCGA-AG-A014 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A015         TCGA-AG-A016         TCGA-AG-A01L 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A01W         TCGA-AG-A01Y         TCGA-AG-A020 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A025         TCGA-AG-A026         TCGA-AG-A02G 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A02N         TCGA-AG-A02X         TCGA-AG-A032 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A036 
"IL1RAPL2 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-A6-2683         TCGA-AA-3518         TCGA-AA-3526 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-A00A 
  "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00Q         TCGA-AA-A00R         TCGA-AA-A00U 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00W         TCGA-AA-A00Z         TCGA-AA-A01F 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01G         TCGA-AA-A01Q         TCGA-AF-2689 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-3400 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3581         TCGA-AG-3582 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3587         TCGA-AG-3599 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-3726         TCGA-AG-3727         TCGA-AG-3878 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3892         TCGA-AG-3893 
  "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3999         TCGA-AG-4001 
  "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-A002 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" 
        TCGA-AG-A008         TCGA-AG-A00C         TCGA-AG-A00H 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A00Y         TCGA-AG-A011         TCGA-AG-A014 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A015         TCGA-AG-A016         TCGA-AG-A01L 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A01W         TCGA-AG-A01Y         TCGA-AG-A020 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A025         TCGA-AG-A026         TCGA-AG-A02G 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A02N         TCGA-AG-A02X         TCGA-AG-A032 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A036 
"IL1RAPL2 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-A6-2683         TCGA-AA-3518         TCGA-AA-3526 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-A00A 
  "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00Q         TCGA-AA-A00R         TCGA-AA-A00U 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00W         TCGA-AA-A00Z         TCGA-AA-A01F 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01G         TCGA-AA-A01Q         TCGA-AF-2689 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-3400 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3581         TCGA-AG-3582 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3587         TCGA-AG-3599 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-3726         TCGA-AG-3727         TCGA-AG-3878 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3892         TCGA-AG-3893 
  "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3999         TCGA-AG-4001 
  "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-A002 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" 
        TCGA-AG-A008         TCGA-AG-A00C         TCGA-AG-A00H 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A00Y         TCGA-AG-A011         TCGA-AG-A014 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A015         TCGA-AG-A016         TCGA-AG-A01L 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A01W         TCGA-AG-A01Y         TCGA-AG-A020 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A025         TCGA-AG-A026         TCGA-AG-A02G 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A02N         TCGA-AG-A02X         TCGA-AG-A032 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A036 
"IL1RAPL2 WILD-TYPE" 
[1] "hr="     "9200000"
D36V2, continuous
D36V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  IL1RAPL2 MUTATED      1    5
  IL1RAPL2 WILD-TYPE   52   63
        clus
vv       IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE
  COLON                 1                 52
  RECTUM                5                 63
D36V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  IL1RAPL2 MUTATED      3    3
  IL1RAPL2 WILD-TYPE   67   49
        clus
vv       IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE
  FEMALE                3                 49
  MALE                  3                 67
D36V5, multiclass
                                clus
vv                               IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE
  COLON ADENOCARCINOMA                          0                 45
  COLON MUCINOUS ADENOCARCINOMA                 1                  6
  RECTAL ADENOCARCINOMA                         3                 54
  RECTAL MUCINOUS ADENOCARCINOMA                2                  6
D36V6, multiclass
    clus
vv   IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE
  T1                0                  6
  T2                1                 24
  T3                5                 79
  T4                0                  6
D36V7, multiclass
    clus
vv   IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE
  N0                5                 73
  N1                1                 21
  N2                0                 22
D36V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  IL1RAPL2 MUTATED      6    0
  IL1RAPL2 WILD-TYPE  103   12
    clus
vv   IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE
  M0                6                103
  M1                0                 12
D36V9, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  IL1RAPL2 MUTATED      6    0
  IL1RAPL2 WILD-TYPE  110    6
     clus
vv    IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE
  NO                 0                  6
  YES                6                110

Clustering(37) Variable = DPF2 MUTATION ANALYSIS
D37V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE"   "DPF2 MUTATED" "DPF2 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE"   "DPF2 MUTATED" "DPF2 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE"   "DPF2 MUTATED" "DPF2 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
[1] "Remove cluster labels:" "DPF2 MUTATED"          
clus
  DPF2 MUTATED DPF2 WILD-TYPE 
             1             66 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A020     TCGA-AG-A025 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N     TCGA-AG-A02X 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A032     TCGA-AG-A036 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
D37V2, continuous
D37V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DPF2 MUTATED      2    2
  DPF2 WILD-TYPE   51   66
        clus
vv       DPF2 MUTATED DPF2 WILD-TYPE
  COLON             2             51
  RECTUM            2             66
D37V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DPF2 MUTATED      1    3
  DPF2 WILD-TYPE   69   49
        clus
vv       DPF2 MUTATED DPF2 WILD-TYPE
  FEMALE            3             49
  MALE              1             69
D37V5, multiclass
                                clus
vv                               DPF2 MUTATED DPF2 WILD-TYPE
  COLON ADENOCARCINOMA                      1             44
  COLON MUCINOUS ADENOCARCINOMA             1              6
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D37V6, multiclass
    clus
vv   DPF2 MUTATED DPF2 WILD-TYPE
  T1            0              6
  T2            0             25
  T3            4             80
  T4            0              6
D37V7, multiclass
    clus
vv   DPF2 MUTATED DPF2 WILD-TYPE
  N0            3             75
  N1            0             22
  N2            1             21
D37V8, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DPF2 MUTATED      4    0
  DPF2 WILD-TYPE  105   12
    clus
vv   DPF2 MUTATED DPF2 WILD-TYPE
  M0            4            105
  M1            0             12
D37V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DPF2 MUTATED      4    0
  DPF2 WILD-TYPE  112    6
     clus
vv    DPF2 MUTATED DPF2 WILD-TYPE
  NO             0              6
  YES            4            112

Clustering(38) Variable = ELF3 MUTATION ANALYSIS
D38V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"ELF3 WILD-TYPE"   "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE"   "ELF3 MUTATED" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
  "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"ELF3 WILD-TYPE"   "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE"   "ELF3 MUTATED" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
  "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"ELF3 WILD-TYPE"   "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE"   "ELF3 MUTATED" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
  "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
[1] "hr="     "9200000"
D38V2, continuous
D38V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ELF3 MUTATED      1    3
  ELF3 WILD-TYPE   52   65
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  COLON             1             52
  RECTUM            3             65
D38V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ELF3 MUTATED      2    2
  ELF3 WILD-TYPE   68   50
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  FEMALE            2             50
  MALE              2             68
D38V5, multiclass
                                clus
vv                               ELF3 MUTATED ELF3 WILD-TYPE
  COLON ADENOCARCINOMA                      1             44
  COLON MUCINOUS ADENOCARCINOMA             0              7
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D38V6, multiclass
    clus
vv   ELF3 MUTATED ELF3 WILD-TYPE
  T1            1              5
  T2            1             24
  T3            2             82
  T4            0              6
D38V7, multiclass
    clus
vv   ELF3 MUTATED ELF3 WILD-TYPE
  N0            3             75
  N1            1             21
  N2            0             22
D38V8, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ELF3 MUTATED      4    0
  ELF3 WILD-TYPE  105   12
    clus
vv   ELF3 MUTATED ELF3 WILD-TYPE
  M0            4            105
  M1            0             12
D38V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ELF3 MUTATED      3    1
  ELF3 WILD-TYPE  113    5
     clus
vv    ELF3 MUTATED ELF3 WILD-TYPE
  NO             1              5
  YES            3            113

Clustering(39) Variable = NRXN3 MUTATION ANALYSIS
D39V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE"   "NRXN3 MUTATED" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE"   "NRXN3 MUTATED" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE"   "NRXN3 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE"   "NRXN3 MUTATED" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE"   "NRXN3 MUTATED" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE"   "NRXN3 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE"   "NRXN3 MUTATED" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE"   "NRXN3 MUTATED" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE"   "NRXN3 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
[1] "hr="     "7.7e+07"
D39V2, continuous
D39V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NRXN3 MUTATED      9    2
  NRXN3 WILD-TYPE   44   66
        clus
vv       NRXN3 MUTATED NRXN3 WILD-TYPE
  COLON              9              44
  RECTUM             2              66
D39V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NRXN3 MUTATED      7    4
  NRXN3 WILD-TYPE   63   48
        clus
vv       NRXN3 MUTATED NRXN3 WILD-TYPE
  FEMALE             4              48
  MALE               7              63
D39V5, multiclass
                                clus
vv                               NRXN3 MUTATED NRXN3 WILD-TYPE
  COLON ADENOCARCINOMA                       7              38
  COLON MUCINOUS ADENOCARCINOMA              2               5
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D39V6, multiclass
    clus
vv   NRXN3 MUTATED NRXN3 WILD-TYPE
  T1             0               6
  T2             5              20
  T3             6              78
  T4             0               6
D39V7, multiclass
    clus
vv   NRXN3 MUTATED NRXN3 WILD-TYPE
  N0             7              71
  N1             3              19
  N2             1              21
D39V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NRXN3 MUTATED     10    0
  NRXN3 WILD-TYPE   99   12
    clus
vv   NRXN3 MUTATED NRXN3 WILD-TYPE
  M0            10              99
  M1             0              12
D39V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NRXN3 MUTATED     10    1
  NRXN3 WILD-TYPE  106    5
     clus
vv    NRXN3 MUTATED NRXN3 WILD-TYPE
  NO              1               5
  YES            10             106

Clustering(40) Variable = TRIM44 MUTATION ANALYSIS
D40V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE"   "TRIM44 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE"   "TRIM44 MUTATED" "TRIM44 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"TRIM44 WILD-TYPE"   "TRIM44 MUTATED" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE"   "TRIM44 MUTATED" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
  "TRIM44 MUTATED" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE"   "TRIM44 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE"   "TRIM44 MUTATED" "TRIM44 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"TRIM44 WILD-TYPE"   "TRIM44 MUTATED" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE"   "TRIM44 MUTATED" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
  "TRIM44 MUTATED" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE"   "TRIM44 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE"   "TRIM44 MUTATED" "TRIM44 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"TRIM44 WILD-TYPE"   "TRIM44 MUTATED" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE"   "TRIM44 MUTATED" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
  "TRIM44 MUTATED" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
[1] "hr="     "7.4e+07"
D40V2, continuous
D40V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM44 MUTATED      4    1
  TRIM44 WILD-TYPE   49   67
        clus
vv       TRIM44 MUTATED TRIM44 WILD-TYPE
  COLON               4               49
  RECTUM              1               67
D40V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM44 MUTATED      1    4
  TRIM44 WILD-TYPE   69   48
        clus
vv       TRIM44 MUTATED TRIM44 WILD-TYPE
  FEMALE              4               48
  MALE                1               69
D40V5, multiclass
                                clus
vv                               TRIM44 MUTATED TRIM44 WILD-TYPE
  COLON ADENOCARCINOMA                        1               44
  COLON MUCINOUS ADENOCARCINOMA               3                4
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D40V6, multiclass
    clus
vv   TRIM44 MUTATED TRIM44 WILD-TYPE
  T1              1                5
  T2              0               25
  T3              1               83
  T4              2                4
D40V7, multiclass
    clus
vv   TRIM44 MUTATED TRIM44 WILD-TYPE
  N0              4               74
  N1              1               21
  N2              0               22
D40V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM44 MUTATED      4    1
  TRIM44 WILD-TYPE  105   11
    clus
vv   TRIM44 MUTATED TRIM44 WILD-TYPE
  M0              4              105
  M1              1               11
D40V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM44 MUTATED      3    2
  TRIM44 WILD-TYPE  113    4
     clus
vv    TRIM44 MUTATED TRIM44 WILD-TYPE
  NO               2                4
  YES              3              113

Clustering(41) Variable = SESTD1 MUTATION ANALYSIS
D41V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"SESTD1 WILD-TYPE"   "SESTD1 MUTATED" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE"   "SESTD1 MUTATED" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"SESTD1 WILD-TYPE"   "SESTD1 MUTATED" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE"   "SESTD1 MUTATED" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
  "SESTD1 MUTATED" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"SESTD1 WILD-TYPE"   "SESTD1 MUTATED" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE"   "SESTD1 MUTATED" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"SESTD1 WILD-TYPE"   "SESTD1 MUTATED" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE"   "SESTD1 MUTATED" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
  "SESTD1 MUTATED" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"SESTD1 WILD-TYPE"   "SESTD1 MUTATED" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE"   "SESTD1 MUTATED" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"SESTD1 WILD-TYPE"   "SESTD1 MUTATED" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE"   "SESTD1 MUTATED" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
  "SESTD1 MUTATED" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" "SESTD1 WILD-TYPE" 
[1] "hr="   "8e+07"
D41V2, continuous
D41V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SESTD1 MUTATED      5    2
  SESTD1 WILD-TYPE   48   66
        clus
vv       SESTD1 MUTATED SESTD1 WILD-TYPE
  COLON               5               48
  RECTUM              2               66
D41V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SESTD1 MUTATED      2    5
  SESTD1 WILD-TYPE   68   47
        clus
vv       SESTD1 MUTATED SESTD1 WILD-TYPE
  FEMALE              5               47
  MALE                2               68
D41V5, multiclass
                                clus
vv                               SESTD1 MUTATED SESTD1 WILD-TYPE
  COLON ADENOCARCINOMA                        4               41
  COLON MUCINOUS ADENOCARCINOMA               1                6
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D41V6, multiclass
    clus
vv   SESTD1 MUTATED SESTD1 WILD-TYPE
  T1              1                5
  T2              1               24
  T3              4               80
  T4              1                5
D41V7, multiclass
    clus
vv   SESTD1 MUTATED SESTD1 WILD-TYPE
  N0              4               74
  N1              2               20
  N2              1               21
D41V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SESTD1 MUTATED      7    0
  SESTD1 WILD-TYPE  102   12
    clus
vv   SESTD1 MUTATED SESTD1 WILD-TYPE
  M0              7              102
  M1              0               12
D41V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SESTD1 MUTATED      6    1
  SESTD1 WILD-TYPE  110    5
     clus
vv    SESTD1 MUTATED SESTD1 WILD-TYPE
  NO               1                5
  YES              6              110

Clustering(42) Variable = CD180 MUTATION ANALYSIS
D42V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CD180 WILD-TYPE"   "CD180 MUTATED" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE"   "CD180 MUTATED" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE"   "CD180 MUTATED" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE"   "CD180 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CD180 WILD-TYPE"   "CD180 MUTATED" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE"   "CD180 MUTATED" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE"   "CD180 MUTATED" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE"   "CD180 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CD180 WILD-TYPE"   "CD180 MUTATED" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE"   "CD180 MUTATED" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE"   "CD180 MUTATED" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE"   "CD180 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
[1] "hr="     "7.4e+07"
D42V2, continuous
D42V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CD180 MUTATED      5    1
  CD180 WILD-TYPE   48   67
        clus
vv       CD180 MUTATED CD180 WILD-TYPE
  COLON              5              48
  RECTUM             1              67
D42V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CD180 MUTATED      4    2
  CD180 WILD-TYPE   66   50
        clus
vv       CD180 MUTATED CD180 WILD-TYPE
  FEMALE             2              50
  MALE               4              66
D42V5, multiclass
                                clus
vv                               CD180 MUTATED CD180 WILD-TYPE
  COLON ADENOCARCINOMA                       5              40
  COLON MUCINOUS ADENOCARCINOMA              0               7
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D42V6, multiclass
    clus
vv   CD180 MUTATED CD180 WILD-TYPE
  T1             0               6
  T2             3              22
  T3             3              81
  T4             0               6
D42V7, multiclass
    clus
vv   CD180 MUTATED CD180 WILD-TYPE
  N0             5              73
  N1             1              21
  N2             0              22
D42V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CD180 MUTATED      5    0
  CD180 WILD-TYPE  104   12
    clus
vv   CD180 MUTATED CD180 WILD-TYPE
  M0             5             104
  M1             0              12
D42V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CD180 MUTATED      6    0
  CD180 WILD-TYPE  110    6
     clus
vv    CD180 MUTATED CD180 WILD-TYPE
  NO              0               6
  YES             6             110

Clustering(43) Variable = CTNNB1 MUTATION ANALYSIS
D43V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
  "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
  "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
  "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
  "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
  "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
  "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
[1] "hr="     "7.4e+07"
D43V2, continuous
D43V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CTNNB1 MUTATED      3    4
  CTNNB1 WILD-TYPE   50   64
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  COLON               3               50
  RECTUM              4               64
D43V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CTNNB1 MUTATED      2    5
  CTNNB1 WILD-TYPE   68   47
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  FEMALE              5               47
  MALE                2               68
D43V5, multiclass
                                clus
vv                               CTNNB1 MUTATED CTNNB1 WILD-TYPE
  COLON ADENOCARCINOMA                        3               42
  COLON MUCINOUS ADENOCARCINOMA               0                7
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              1                7
D43V6, multiclass
    clus
vv   CTNNB1 MUTATED CTNNB1 WILD-TYPE
  T1              1                5
  T2              0               25
  T3              6               78
  T4              0                6
D43V7, multiclass
    clus
vv   CTNNB1 MUTATED CTNNB1 WILD-TYPE
  N0              4               74
  N1              3               19
  N2              0               22
D43V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CTNNB1 MUTATED      7    0
  CTNNB1 WILD-TYPE  102   12
    clus
vv   CTNNB1 MUTATED CTNNB1 WILD-TYPE
  M0              7              102
  M1              0               12
D43V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CTNNB1 MUTATED      6    1
  CTNNB1 WILD-TYPE  110    5
     clus
vv    CTNNB1 MUTATED CTNNB1 WILD-TYPE
  NO               1                5
  YES              6              110

Clustering(44) Variable = CDH8 MUTATION ANALYSIS
D44V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE"   "CDH8 MUTATED" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"CDH8 WILD-TYPE"   "CDH8 MUTATED"   "CDH8 MUTATED" "CDH8 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE"   "CDH8 MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE"   "CDH8 MUTATED" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE"   "CDH8 MUTATED" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"CDH8 WILD-TYPE"   "CDH8 MUTATED"   "CDH8 MUTATED" "CDH8 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE"   "CDH8 MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE"   "CDH8 MUTATED" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE"   "CDH8 MUTATED" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"CDH8 WILD-TYPE"   "CDH8 MUTATED"   "CDH8 MUTATED" "CDH8 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE"   "CDH8 MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE"   "CDH8 MUTATED" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D44V2, continuous
D44V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH8 MUTATED      4    4
  CDH8 WILD-TYPE   49   64
        clus
vv       CDH8 MUTATED CDH8 WILD-TYPE
  COLON             4             49
  RECTUM            4             64
D44V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH8 MUTATED      4    4
  CDH8 WILD-TYPE   66   48
        clus
vv       CDH8 MUTATED CDH8 WILD-TYPE
  FEMALE            4             48
  MALE              4             66
D44V5, multiclass
                                clus
vv                               CDH8 MUTATED CDH8 WILD-TYPE
  COLON ADENOCARCINOMA                      4             41
  COLON MUCINOUS ADENOCARCINOMA             0              7
  RECTAL ADENOCARCINOMA                     4             53
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D44V6, multiclass
    clus
vv   CDH8 MUTATED CDH8 WILD-TYPE
  T1            0              6
  T2            3             22
  T3            5             79
  T4            0              6
D44V7, multiclass
    clus
vv   CDH8 MUTATED CDH8 WILD-TYPE
  N0            5             73
  N1            1             21
  N2            2             20
D44V8, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH8 MUTATED      6    2
  CDH8 WILD-TYPE  103   10
    clus
vv   CDH8 MUTATED CDH8 WILD-TYPE
  M0            6            103
  M1            2             10
D44V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH8 MUTATED      8    0
  CDH8 WILD-TYPE  108    6
     clus
vv    CDH8 MUTATED CDH8 WILD-TYPE
  NO             0              6
  YES            8            108

Clustering(45) Variable = NALCN MUTATION ANALYSIS
D45V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
[1] "hr=" "2.5"
D45V2, continuous
D45V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NALCN MUTATED      6    6
  NALCN WILD-TYPE   47   62
        clus
vv       NALCN MUTATED NALCN WILD-TYPE
  COLON              6              47
  RECTUM             6              62
D45V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NALCN MUTATED      7    5
  NALCN WILD-TYPE   63   47
        clus
vv       NALCN MUTATED NALCN WILD-TYPE
  FEMALE             5              47
  MALE               7              63
D45V5, multiclass
                                clus
vv                               NALCN MUTATED NALCN WILD-TYPE
  COLON ADENOCARCINOMA                       5              40
  COLON MUCINOUS ADENOCARCINOMA              1               6
  RECTAL ADENOCARCINOMA                      6              51
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D45V6, multiclass
    clus
vv   NALCN MUTATED NALCN WILD-TYPE
  T1             1               5
  T2             3              22
  T3             8              76
  T4             0               6
D45V7, multiclass
    clus
vv   NALCN MUTATED NALCN WILD-TYPE
  N0             8              70
  N1             2              20
  N2             2              20
D45V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NALCN MUTATED     10    1
  NALCN WILD-TYPE   99   11
    clus
vv   NALCN MUTATED NALCN WILD-TYPE
  M0            10              99
  M1             1              11
D45V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NALCN MUTATED     12    0
  NALCN WILD-TYPE  104    6
     clus
vv    NALCN MUTATED NALCN WILD-TYPE
  NO              0               6
  YES            12             104

Clustering(46) Variable = PCDH9 MUTATION ANALYSIS
D46V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
[1] "hr=" "4.6"
D46V2, continuous
D46V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PCDH9 MUTATED      4    6
  PCDH9 WILD-TYPE   49   62
        clus
vv       PCDH9 MUTATED PCDH9 WILD-TYPE
  COLON              4              49
  RECTUM             6              62
D46V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PCDH9 MUTATED      7    3
  PCDH9 WILD-TYPE   63   49
        clus
vv       PCDH9 MUTATED PCDH9 WILD-TYPE
  FEMALE             3              49
  MALE               7              63
D46V5, multiclass
                                clus
vv                               PCDH9 MUTATED PCDH9 WILD-TYPE
  COLON ADENOCARCINOMA                       3              42
  COLON MUCINOUS ADENOCARCINOMA              1               6
  RECTAL ADENOCARCINOMA                      6              51
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D46V6, multiclass
    clus
vv   PCDH9 MUTATED PCDH9 WILD-TYPE
  T1             0               6
  T2             1              24
  T3             8              76
  T4             1               5
D46V7, multiclass
    clus
vv   PCDH9 MUTATED PCDH9 WILD-TYPE
  N0             6              72
  N1             2              20
  N2             2              20
D46V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PCDH9 MUTATED     10    0
  PCDH9 WILD-TYPE   99   12
    clus
vv   PCDH9 MUTATED PCDH9 WILD-TYPE
  M0            10              99
  M1             0              12
D46V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PCDH9 MUTATED     10    0
  PCDH9 WILD-TYPE  106    6
     clus
vv    PCDH9 MUTATED PCDH9 WILD-TYPE
  NO              0               6
  YES            10             106

Clustering(47) Variable = ZCWPW2 MUTATION ANALYSIS
D47V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
  "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
  "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
  "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D47V2, continuous
D47V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZCWPW2 MUTATED      2    3
  ZCWPW2 WILD-TYPE   51   65
        clus
vv       ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  COLON               2               51
  RECTUM              3               65
D47V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZCWPW2 MUTATED      3    2
  ZCWPW2 WILD-TYPE   67   50
        clus
vv       ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  FEMALE              2               50
  MALE                3               67
D47V5, multiclass
                                clus
vv                               ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  COLON ADENOCARCINOMA                        2               43
  COLON MUCINOUS ADENOCARCINOMA               0                7
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D47V6, multiclass
    clus
vv   ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  T1              0                6
  T2              3               22
  T3              1               83
  T4              1                5
D47V7, multiclass
    clus
vv   ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  N0              5               73
  N1              0               22
  N2              0               22
D47V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZCWPW2 MUTATED      3    1
  ZCWPW2 WILD-TYPE  106   11
    clus
vv   ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  M0              3              106
  M1              1               11
D47V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZCWPW2 MUTATED      4    1
  ZCWPW2 WILD-TYPE  112    5
     clus
vv    ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  NO               1                5
  YES              4              112

Clustering(48) Variable = CDH12 MUTATION ANALYSIS
D48V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "CDH12 MUTATED" "CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "CDH12 MUTATED" "CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "CDH12 MUTATED" "CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D48V2, continuous
D48V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH12 MUTATED      4    5
  CDH12 WILD-TYPE   49   63
        clus
vv       CDH12 MUTATED CDH12 WILD-TYPE
  COLON              4              49
  RECTUM             5              63
D48V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH12 MUTATED      4    5
  CDH12 WILD-TYPE   66   47
        clus
vv       CDH12 MUTATED CDH12 WILD-TYPE
  FEMALE             5              47
  MALE               4              66
D48V5, multiclass
                                clus
vv                               CDH12 MUTATED CDH12 WILD-TYPE
  COLON ADENOCARCINOMA                       3              42
  COLON MUCINOUS ADENOCARCINOMA              1               6
  RECTAL ADENOCARCINOMA                      5              52
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D48V6, multiclass
    clus
vv   CDH12 MUTATED CDH12 WILD-TYPE
  T1             1               5
  T2             3              22
  T3             5              79
  T4             0               6
D48V7, multiclass
    clus
vv   CDH12 MUTATED CDH12 WILD-TYPE
  N0             9              69
  N1             0              22
  N2             0              22
D48V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH12 MUTATED      9    0
  CDH12 WILD-TYPE  100   12
    clus
vv   CDH12 MUTATED CDH12 WILD-TYPE
  M0             9             100
  M1             0              12
D48V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH12 MUTATED      9    0
  CDH12 WILD-TYPE  107    6
     clus
vv    CDH12 MUTATED CDH12 WILD-TYPE
  NO              0               6
  YES             9             107

Clustering(49) Variable = PIK3CA MUTATION ANALYSIS
D49V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
[1] "hr="     "7.9e+07"
D49V2, continuous
D49V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED      0    7
  PIK3CA WILD-TYPE   53   61
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  COLON               0               53
  RECTUM              7               61
D49V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED      4    3
  PIK3CA WILD-TYPE   66   49
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  FEMALE              3               49
  MALE                4               66
D49V5, multiclass
                                clus
vv                               PIK3CA MUTATED PIK3CA WILD-TYPE
  COLON ADENOCARCINOMA                        0               45
  COLON MUCINOUS ADENOCARCINOMA               0                7
  RECTAL ADENOCARCINOMA                       4               53
  RECTAL MUCINOUS ADENOCARCINOMA              3                5
D49V6, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  T1              0                6
  T2              1               24
  T3              6               78
  T4              0                6
D49V7, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  N0              5               73
  N1              2               20
  N2              0               22
D49V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED      7    0
  PIK3CA WILD-TYPE  102   12
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  M0              7              102
  M1              0               12
D49V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED      7    0
  PIK3CA WILD-TYPE  109    6
     clus
vv    PIK3CA MUTATED PIK3CA WILD-TYPE
  NO               0                6
  YES              7              109

Clustering(50) Variable = FZD3 MUTATION ANALYSIS
D50V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE"   "FZD3 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"FZD3 WILD-TYPE"   "FZD3 MUTATED" "FZD3 WILD-TYPE"   "FZD3 MUTATED" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"FZD3 WILD-TYPE"   "FZD3 MUTATED" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE"   "FZD3 MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE"   "FZD3 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"FZD3 WILD-TYPE"   "FZD3 MUTATED" "FZD3 WILD-TYPE"   "FZD3 MUTATED" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"FZD3 WILD-TYPE"   "FZD3 MUTATED" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE"   "FZD3 MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE"   "FZD3 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"FZD3 WILD-TYPE"   "FZD3 MUTATED" "FZD3 WILD-TYPE"   "FZD3 MUTATED" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"FZD3 WILD-TYPE"   "FZD3 MUTATED" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE"   "FZD3 MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"FZD3 WILD-TYPE" "FZD3 WILD-TYPE" "FZD3 WILD-TYPE" 
[1] "hr="     "7.7e+07"
D50V2, continuous
D50V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FZD3 MUTATED      4    1
  FZD3 WILD-TYPE   49   67
        clus
vv       FZD3 MUTATED FZD3 WILD-TYPE
  COLON             4             49
  RECTUM            1             67
D50V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FZD3 MUTATED      3    2
  FZD3 WILD-TYPE   67   50
        clus
vv       FZD3 MUTATED FZD3 WILD-TYPE
  FEMALE            2             50
  MALE              3             67
D50V5, multiclass
                                clus
vv                               FZD3 MUTATED FZD3 WILD-TYPE
  COLON ADENOCARCINOMA                      2             43
  COLON MUCINOUS ADENOCARCINOMA             2              5
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D50V6, multiclass
    clus
vv   FZD3 MUTATED FZD3 WILD-TYPE
  T1            0              6
  T2            1             24
  T3            2             82
  T4            1              5
D50V7, multiclass
    clus
vv   FZD3 MUTATED FZD3 WILD-TYPE
  N0            4             74
  N1            1             21
  N2            0             22
D50V8, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FZD3 MUTATED      5    0
  FZD3 WILD-TYPE  104   12
    clus
vv   FZD3 MUTATED FZD3 WILD-TYPE
  M0            5            104
  M1            0             12
D50V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FZD3 MUTATED      4    1
  FZD3 WILD-TYPE  112    5
     clus
vv    FZD3 MUTATED FZD3 WILD-TYPE
  NO             1              5
  YES            4            112

Clustering(51) Variable = DACH2 MUTATION ANALYSIS
D51V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
[1] "hr="     "7.4e+07"
D51V2, continuous
D51V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DACH2 MUTATED      4    4
  DACH2 WILD-TYPE   49   64
        clus
vv       DACH2 MUTATED DACH2 WILD-TYPE
  COLON              4              49
  RECTUM             4              64
D51V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DACH2 MUTATED      4    4
  DACH2 WILD-TYPE   66   48
        clus
vv       DACH2 MUTATED DACH2 WILD-TYPE
  FEMALE             4              48
  MALE               4              66
D51V5, multiclass
                                clus
vv                               DACH2 MUTATED DACH2 WILD-TYPE
  COLON ADENOCARCINOMA                       3              42
  COLON MUCINOUS ADENOCARCINOMA              1               6
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D51V6, multiclass
    clus
vv   DACH2 MUTATED DACH2 WILD-TYPE
  T1             0               6
  T2             3              22
  T3             4              80
  T4             1               5
D51V7, multiclass
    clus
vv   DACH2 MUTATED DACH2 WILD-TYPE
  N0             6              72
  N1             2              20
  N2             0              22
D51V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DACH2 MUTATED      8    0
  DACH2 WILD-TYPE  101   12
    clus
vv   DACH2 MUTATED DACH2 WILD-TYPE
  M0             8             101
  M1             0              12
D51V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DACH2 MUTATED      8    0
  DACH2 WILD-TYPE  108    6
     clus
vv    DACH2 MUTATED DACH2 WILD-TYPE
  NO              0               6
  YES             8             108

Clustering(52) Variable = TXNDC3 MUTATION ANALYSIS
D52V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
  "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
  "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
  "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
  "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
  "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
  "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D52V2, continuous
D52V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TXNDC3 MUTATED      5    1
  TXNDC3 WILD-TYPE   48   67
        clus
vv       TXNDC3 MUTATED TXNDC3 WILD-TYPE
  COLON               5               48
  RECTUM              1               67
D52V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TXNDC3 MUTATED      3    3
  TXNDC3 WILD-TYPE   67   49
        clus
vv       TXNDC3 MUTATED TXNDC3 WILD-TYPE
  FEMALE              3               49
  MALE                3               67
D52V5, multiclass
                                clus
vv                               TXNDC3 MUTATED TXNDC3 WILD-TYPE
  COLON ADENOCARCINOMA                        4               41
  COLON MUCINOUS ADENOCARCINOMA               1                6
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D52V6, multiclass
    clus
vv   TXNDC3 MUTATED TXNDC3 WILD-TYPE
  T1              1                5
  T2              1               24
  T3              4               80
  T4              0                6
D52V7, multiclass
    clus
vv   TXNDC3 MUTATED TXNDC3 WILD-TYPE
  N0              4               74
  N1              1               21
  N2              1               21
D52V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TXNDC3 MUTATED      6    0
  TXNDC3 WILD-TYPE  103   12
    clus
vv   TXNDC3 MUTATED TXNDC3 WILD-TYPE
  M0              6              103
  M1              0               12
D52V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TXNDC3 MUTATED      6    0
  TXNDC3 WILD-TYPE  110    6
     clus
vv    TXNDC3 MUTATED TXNDC3 WILD-TYPE
  NO               0                6
  YES              6              110

Clustering(53) Variable = BCHE MUTATION ANALYSIS
D53V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"BCHE WILD-TYPE"   "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"BCHE WILD-TYPE"   "BCHE MUTATED" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"BCHE WILD-TYPE"   "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"BCHE WILD-TYPE"   "BCHE MUTATED" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"BCHE WILD-TYPE"   "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"BCHE WILD-TYPE"   "BCHE MUTATED" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
[1] "hr="     "2.6e+07"
D53V2, continuous
D53V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BCHE MUTATED      4    2
  BCHE WILD-TYPE   49   66
        clus
vv       BCHE MUTATED BCHE WILD-TYPE
  COLON             4             49
  RECTUM            2             66
D53V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BCHE MUTATED      5    1
  BCHE WILD-TYPE   65   51
        clus
vv       BCHE MUTATED BCHE WILD-TYPE
  FEMALE            1             51
  MALE              5             65
D53V5, multiclass
                                clus
vv                               BCHE MUTATED BCHE WILD-TYPE
  COLON ADENOCARCINOMA                      3             42
  COLON MUCINOUS ADENOCARCINOMA             1              6
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D53V6, multiclass
    clus
vv   BCHE MUTATED BCHE WILD-TYPE
  T1            0              6
  T2            2             23
  T3            3             81
  T4            1              5
D53V7, multiclass
    clus
vv   BCHE MUTATED BCHE WILD-TYPE
  N0            4             74
  N1            0             22
  N2            2             20
D53V8, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BCHE MUTATED      5    1
  BCHE WILD-TYPE  104   11
    clus
vv   BCHE MUTATED BCHE WILD-TYPE
  M0            5            104
  M1            1             11
D53V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BCHE MUTATED      6    0
  BCHE WILD-TYPE  110    6
     clus
vv    BCHE MUTATED BCHE WILD-TYPE
  NO             0              6
  YES            6            110

Clustering(54) Variable = ERBB2 MUTATION ANALYSIS
D54V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE"   "ERBB2 MUTATED" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE"   "ERBB2 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE"   "ERBB2 MUTATED" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE"   "ERBB2 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE"   "ERBB2 MUTATED" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE"   "ERBB2 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
[1] "Remove cluster labels:" "ERBB2 MUTATED"         
clus
  ERBB2 MUTATED ERBB2 WILD-TYPE 
              2              65 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3726 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887      TCGA-AG-3892 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999      TCGA-AG-4001 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A008      TCGA-AG-A00C 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-A02G      TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032 
"ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" "ERBB2 WILD-TYPE" 
     TCGA-AG-A036 
"ERBB2 WILD-TYPE" 
D54V2, continuous
D54V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ERBB2 MUTATED      0    4
  ERBB2 WILD-TYPE   53   64
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  COLON              0              53
  RECTUM             4              64
D54V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ERBB2 MUTATED      4    0
  ERBB2 WILD-TYPE   66   52
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  FEMALE             0              52
  MALE               4              66
D54V5, multiclass
                                clus
vv                               ERBB2 MUTATED ERBB2 WILD-TYPE
  COLON ADENOCARCINOMA                       0              45
  COLON MUCINOUS ADENOCARCINOMA              0               7
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D54V6, multiclass
    clus
vv   ERBB2 MUTATED ERBB2 WILD-TYPE
  T1             0               6
  T2             2              23
  T3             2              82
  T4             0               6
D54V7, multiclass
    clus
vv   ERBB2 MUTATED ERBB2 WILD-TYPE
  N0             4              74
  N1             0              22
  N2             0              22
D54V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ERBB2 MUTATED      4    0
  ERBB2 WILD-TYPE  105   12
    clus
vv   ERBB2 MUTATED ERBB2 WILD-TYPE
  M0             4             105
  M1             0              12
D54V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ERBB2 MUTATED      4    0
  ERBB2 WILD-TYPE  112    6
     clus
vv    ERBB2 MUTATED ERBB2 WILD-TYPE
  NO              0               6
  YES             4             112

Clustering(55) Variable = ZSWIM3 MUTATION ANALYSIS
D55V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE"   "ZSWIM3 MUTATED" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE"   "ZSWIM3 MUTATED" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"ZSWIM3 WILD-TYPE"   "ZSWIM3 MUTATED" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE"   "ZSWIM3 MUTATED" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE"   "ZSWIM3 MUTATED" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"ZSWIM3 WILD-TYPE"   "ZSWIM3 MUTATED" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE"   "ZSWIM3 MUTATED" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE"   "ZSWIM3 MUTATED" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"ZSWIM3 WILD-TYPE"   "ZSWIM3 MUTATED" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" "ZSWIM3 WILD-TYPE" 
[1] "hr="     "9200000"
D55V2, continuous
D55V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZSWIM3 MUTATED      4    1
  ZSWIM3 WILD-TYPE   49   67
        clus
vv       ZSWIM3 MUTATED ZSWIM3 WILD-TYPE
  COLON               4               49
  RECTUM              1               67
D55V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZSWIM3 MUTATED      3    2
  ZSWIM3 WILD-TYPE   67   50
        clus
vv       ZSWIM3 MUTATED ZSWIM3 WILD-TYPE
  FEMALE              2               50
  MALE                3               67
D55V5, multiclass
                                clus
vv                               ZSWIM3 MUTATED ZSWIM3 WILD-TYPE
  COLON ADENOCARCINOMA                        4               41
  COLON MUCINOUS ADENOCARCINOMA               0                7
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D55V6, multiclass
    clus
vv   ZSWIM3 MUTATED ZSWIM3 WILD-TYPE
  T1              0                6
  T2              0               25
  T3              4               80
  T4              1                5
D55V7, multiclass
    clus
vv   ZSWIM3 MUTATED ZSWIM3 WILD-TYPE
  N0              3               75
  N1              0               22
  N2              2               20
D55V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZSWIM3 MUTATED      4    1
  ZSWIM3 WILD-TYPE  105   11
    clus
vv   ZSWIM3 MUTATED ZSWIM3 WILD-TYPE
  M0              4              105
  M1              1               11
D55V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZSWIM3 MUTATED      5    0
  ZSWIM3 WILD-TYPE  111    6
     clus
vv    ZSWIM3 MUTATED ZSWIM3 WILD-TYPE
  NO               0                6
  YES              5              111

Clustering(56) Variable = TASP1 MUTATION ANALYSIS
D56V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE"   "TASP1 MUTATED" "TASP1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"TASP1 WILD-TYPE"   "TASP1 MUTATED" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "TASP1 MUTATED" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE"   "TASP1 MUTATED" "TASP1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"TASP1 WILD-TYPE"   "TASP1 MUTATED" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "TASP1 MUTATED" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE"   "TASP1 MUTATED" "TASP1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"TASP1 WILD-TYPE"   "TASP1 MUTATED" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "TASP1 MUTATED" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TASP1 WILD-TYPE" "TASP1 WILD-TYPE" "TASP1 WILD-TYPE" 
[1] "hr="     "9200000"
D56V2, continuous
D56V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TASP1 MUTATED      3    1
  TASP1 WILD-TYPE   50   67
        clus
vv       TASP1 MUTATED TASP1 WILD-TYPE
  COLON              3              50
  RECTUM             1              67
D56V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TASP1 MUTATED      1    3
  TASP1 WILD-TYPE   69   49
        clus
vv       TASP1 MUTATED TASP1 WILD-TYPE
  FEMALE             3              49
  MALE               1              69
D56V5, multiclass
                                clus
vv                               TASP1 MUTATED TASP1 WILD-TYPE
  COLON ADENOCARCINOMA                       2              43
  COLON MUCINOUS ADENOCARCINOMA              1               6
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D56V6, multiclass
    clus
vv   TASP1 MUTATED TASP1 WILD-TYPE
  T1             1               5
  T2             1              24
  T3             1              83
  T4             1               5
D56V7, multiclass
    clus
vv   TASP1 MUTATED TASP1 WILD-TYPE
  N0             4              74
  N1             0              22
  N2             0              22
D56V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TASP1 MUTATED      2    1
  TASP1 WILD-TYPE  107   11
    clus
vv   TASP1 MUTATED TASP1 WILD-TYPE
  M0             2             107
  M1             1              11
D56V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TASP1 MUTATED      3    1
  TASP1 WILD-TYPE  113    5
     clus
vv    TASP1 MUTATED TASP1 WILD-TYPE
  NO              1               5
  YES             3             113

Clustering(57) Variable = DNAH2 MUTATION ANALYSIS
D57V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DNAH2 WILD-TYPE"   "DNAH2 MUTATED" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"DNAH2 WILD-TYPE"   "DNAH2 MUTATED" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"DNAH2 WILD-TYPE"   "DNAH2 MUTATED" "DNAH2 WILD-TYPE"   "DNAH2 MUTATED" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE"   "DNAH2 MUTATED" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE"   "DNAH2 MUTATED"   "DNAH2 MUTATED" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE"   "DNAH2 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE"   "DNAH2 MUTATED" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE"   "DNAH2 MUTATED" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "DNAH2 MUTATED" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DNAH2 WILD-TYPE"   "DNAH2 MUTATED" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"DNAH2 WILD-TYPE"   "DNAH2 MUTATED" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"DNAH2 WILD-TYPE"   "DNAH2 MUTATED" "DNAH2 WILD-TYPE"   "DNAH2 MUTATED" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE"   "DNAH2 MUTATED" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE"   "DNAH2 MUTATED"   "DNAH2 MUTATED" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE"   "DNAH2 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE"   "DNAH2 MUTATED" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE"   "DNAH2 MUTATED" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "DNAH2 MUTATED" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DNAH2 WILD-TYPE"   "DNAH2 MUTATED" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"DNAH2 WILD-TYPE"   "DNAH2 MUTATED" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"DNAH2 WILD-TYPE"   "DNAH2 MUTATED" "DNAH2 WILD-TYPE"   "DNAH2 MUTATED" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE"   "DNAH2 MUTATED" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE"   "DNAH2 MUTATED"   "DNAH2 MUTATED" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE"   "DNAH2 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE"   "DNAH2 MUTATED" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE"   "DNAH2 MUTATED" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "DNAH2 MUTATED" "DNAH2 WILD-TYPE" "DNAH2 WILD-TYPE" 
[1] "hr="     "2.7e+08"
D57V2, continuous
D57V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DNAH2 MUTATED     12    5
  DNAH2 WILD-TYPE   41   63
        clus
vv       DNAH2 MUTATED DNAH2 WILD-TYPE
  COLON             12              41
  RECTUM             5              63
D57V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DNAH2 MUTATED     10    7
  DNAH2 WILD-TYPE   60   45
        clus
vv       DNAH2 MUTATED DNAH2 WILD-TYPE
  FEMALE             7              45
  MALE              10              60
D57V5, multiclass
                                clus
vv                               DNAH2 MUTATED DNAH2 WILD-TYPE
  COLON ADENOCARCINOMA                       8              37
  COLON MUCINOUS ADENOCARCINOMA              4               3
  RECTAL ADENOCARCINOMA                      5              52
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D57V6, multiclass
    clus
vv   DNAH2 MUTATED DNAH2 WILD-TYPE
  T1             0               6
  T2             4              21
  T3            12              72
  T4             1               5
D57V7, multiclass
    clus
vv   DNAH2 MUTATED DNAH2 WILD-TYPE
  N0            10              68
  N1             4              18
  N2             3              19
D57V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DNAH2 MUTATED     16    1
  DNAH2 WILD-TYPE   93   11
    clus
vv   DNAH2 MUTATED DNAH2 WILD-TYPE
  M0            16              93
  M1             1              11
D57V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DNAH2 MUTATED     17    0
  DNAH2 WILD-TYPE   99    6
     clus
vv    DNAH2 MUTATED DNAH2 WILD-TYPE
  NO              0               6
  YES            17              99

Clustering(58) Variable = BANK1 MUTATION ANALYSIS
D58V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"BANK1 WILD-TYPE"   "BANK1 MUTATED" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"BANK1 WILD-TYPE"   "BANK1 MUTATED" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "BANK1 MUTATED" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE"   "BANK1 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"BANK1 WILD-TYPE"   "BANK1 MUTATED" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"BANK1 WILD-TYPE"   "BANK1 MUTATED" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "BANK1 MUTATED" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE"   "BANK1 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"BANK1 WILD-TYPE"   "BANK1 MUTATED" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"BANK1 WILD-TYPE"   "BANK1 MUTATED" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "BANK1 MUTATED" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE"   "BANK1 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"BANK1 WILD-TYPE" "BANK1 WILD-TYPE" "BANK1 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D58V2, continuous
D58V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BANK1 MUTATED      3    3
  BANK1 WILD-TYPE   50   65
        clus
vv       BANK1 MUTATED BANK1 WILD-TYPE
  COLON              3              50
  RECTUM             3              65
D58V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BANK1 MUTATED      3    3
  BANK1 WILD-TYPE   67   49
        clus
vv       BANK1 MUTATED BANK1 WILD-TYPE
  FEMALE             3              49
  MALE               3              67
D58V5, multiclass
                                clus
vv                               BANK1 MUTATED BANK1 WILD-TYPE
  COLON ADENOCARCINOMA                       3              42
  COLON MUCINOUS ADENOCARCINOMA              0               7
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D58V6, multiclass
    clus
vv   BANK1 MUTATED BANK1 WILD-TYPE
  T1             1               5
  T2             1              24
  T3             4              80
  T4             0               6
D58V7, multiclass
    clus
vv   BANK1 MUTATED BANK1 WILD-TYPE
  N0             5              73
  N1             1              21
  N2             0              22
D58V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BANK1 MUTATED      6    0
  BANK1 WILD-TYPE  103   12
    clus
vv   BANK1 MUTATED BANK1 WILD-TYPE
  M0             6             103
  M1             0              12
D58V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BANK1 MUTATED      6    0
  BANK1 WILD-TYPE  110    6
     clus
vv    BANK1 MUTATED BANK1 WILD-TYPE
  NO              0               6
  YES             6             110

Clustering(59) Variable = CASP14 MUTATION ANALYSIS
D59V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"CASP14 WILD-TYPE"   "CASP14 MUTATED" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"CASP14 WILD-TYPE"   "CASP14 MUTATED" "CASP14 WILD-TYPE"   "CASP14 MUTATED" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"CASP14 WILD-TYPE"   "CASP14 MUTATED" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"CASP14 WILD-TYPE"   "CASP14 MUTATED" "CASP14 WILD-TYPE"   "CASP14 MUTATED" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"CASP14 WILD-TYPE"   "CASP14 MUTATED" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"CASP14 WILD-TYPE"   "CASP14 MUTATED" "CASP14 WILD-TYPE"   "CASP14 MUTATED" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
[1] "hr="     "9200000"
D59V2, continuous
D59V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CASP14 MUTATED      1    4
  CASP14 WILD-TYPE   52   64
        clus
vv       CASP14 MUTATED CASP14 WILD-TYPE
  COLON               1               52
  RECTUM              4               64
D59V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CASP14 MUTATED      2    3
  CASP14 WILD-TYPE   68   49
        clus
vv       CASP14 MUTATED CASP14 WILD-TYPE
  FEMALE              3               49
  MALE                2               68
D59V5, multiclass
                                clus
vv                               CASP14 MUTATED CASP14 WILD-TYPE
  COLON ADENOCARCINOMA                        1               44
  COLON MUCINOUS ADENOCARCINOMA               0                7
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D59V6, multiclass
    clus
vv   CASP14 MUTATED CASP14 WILD-TYPE
  T1              0                6
  T2              1               24
  T3              3               81
  T4              1                5
D59V7, multiclass
    clus
vv   CASP14 MUTATED CASP14 WILD-TYPE
  N0              1               77
  N1              1               21
  N2              3               19
D59V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CASP14 MUTATED      4    1
  CASP14 WILD-TYPE  105   11
    clus
vv   CASP14 MUTATED CASP14 WILD-TYPE
  M0              4              105
  M1              1               11
D59V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CASP14 MUTATED      5    0
  CASP14 WILD-TYPE  111    6
     clus
vv    CASP14 MUTATED CASP14 WILD-TYPE
  NO               0                6
  YES              5              111

Clustering(60) Variable = CPXCR1 MUTATION ANALYSIS
D60V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
[1] "hr="     "7.9e+07"
D60V2, continuous
D60V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CPXCR1 MUTATED      2    3
  CPXCR1 WILD-TYPE   51   65
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  COLON               2               51
  RECTUM              3               65
D60V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CPXCR1 MUTATED      1    4
  CPXCR1 WILD-TYPE   69   48
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  FEMALE              4               48
  MALE                1               69
D60V5, multiclass
                                clus
vv                               CPXCR1 MUTATED CPXCR1 WILD-TYPE
  COLON ADENOCARCINOMA                        1               44
  COLON MUCINOUS ADENOCARCINOMA               1                6
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              1                7
D60V6, multiclass
    clus
vv   CPXCR1 MUTATED CPXCR1 WILD-TYPE
  T1              1                5
  T2              1               24
  T3              3               81
  T4              0                6
D60V7, multiclass
    clus
vv   CPXCR1 MUTATED CPXCR1 WILD-TYPE
  N0              4               74
  N1              1               21
  N2              0               22
D60V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CPXCR1 MUTATED      5    0
  CPXCR1 WILD-TYPE  104   12
    clus
vv   CPXCR1 MUTATED CPXCR1 WILD-TYPE
  M0              5              104
  M1              0               12
D60V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CPXCR1 MUTATED      5    0
  CPXCR1 WILD-TYPE  111    6
     clus
vv    CPXCR1 MUTATED CPXCR1 WILD-TYPE
  NO               0                6
  YES              5              111

Clustering(61) Variable = P2RY10 MUTATION ANALYSIS
D61V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
[1] "hr=" "17" 
D61V2, continuous
D61V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  P2RY10 MUTATED      3    1
  P2RY10 WILD-TYPE   50   67
        clus
vv       P2RY10 MUTATED P2RY10 WILD-TYPE
  COLON               3               50
  RECTUM              1               67
D61V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  P2RY10 MUTATED      2    2
  P2RY10 WILD-TYPE   68   50
        clus
vv       P2RY10 MUTATED P2RY10 WILD-TYPE
  FEMALE              2               50
  MALE                2               68
D61V5, multiclass
                                clus
vv                               P2RY10 MUTATED P2RY10 WILD-TYPE
  COLON ADENOCARCINOMA                        2               43
  COLON MUCINOUS ADENOCARCINOMA               1                6
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D61V6, multiclass
    clus
vv   P2RY10 MUTATED P2RY10 WILD-TYPE
  T1              0                6
  T2              0               25
  T3              3               81
  T4              1                5
D61V7, multiclass
    clus
vv   P2RY10 MUTATED P2RY10 WILD-TYPE
  N0              2               76
  N1              2               20
  N2              0               22
D61V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  P2RY10 MUTATED      4    0
  P2RY10 WILD-TYPE  105   12
    clus
vv   P2RY10 MUTATED P2RY10 WILD-TYPE
  M0              4              105
  M1              0               12
D61V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  P2RY10 MUTATED      3    1
  P2RY10 WILD-TYPE  113    5
     clus
vv    P2RY10 MUTATED P2RY10 WILD-TYPE
  NO               1                5
  YES              3              113

Clustering(62) Variable = SPATA8 MUTATION ANALYSIS
D62V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
  "SPATA8 MUTATED" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"SPATA8 WILD-TYPE"   "SPATA8 MUTATED" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
  "SPATA8 MUTATED" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"SPATA8 WILD-TYPE"   "SPATA8 MUTATED" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
  "SPATA8 MUTATED" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"SPATA8 WILD-TYPE"   "SPATA8 MUTATED" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
[1] "Remove cluster labels:" "SPATA8 MUTATED"        
clus
  SPATA8 MUTATED SPATA8 WILD-TYPE 
               2               65 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002       TCGA-AG-A008 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A036 
"SPATA8 WILD-TYPE" 
D62V2, continuous
D62V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPATA8 MUTATED      0    3
  SPATA8 WILD-TYPE   53   65
        clus
vv       SPATA8 MUTATED SPATA8 WILD-TYPE
  COLON               0               53
  RECTUM              3               65
D62V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPATA8 MUTATED      0    3
  SPATA8 WILD-TYPE   70   49
        clus
vv       SPATA8 MUTATED SPATA8 WILD-TYPE
  FEMALE              3               49
  MALE                0               70
D62V5, multiclass
                                clus
vv                               SPATA8 MUTATED SPATA8 WILD-TYPE
  COLON ADENOCARCINOMA                        0               45
  COLON MUCINOUS ADENOCARCINOMA               0                7
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D62V6, multiclass
    clus
vv   SPATA8 MUTATED SPATA8 WILD-TYPE
  T1              0                6
  T2              0               25
  T3              3               81
  T4              0                6
D62V7, multiclass
    clus
vv   SPATA8 MUTATED SPATA8 WILD-TYPE
  N0              2               76
  N1              1               21
  N2              0               22
D62V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPATA8 MUTATED      3    0
  SPATA8 WILD-TYPE  106   12
    clus
vv   SPATA8 MUTATED SPATA8 WILD-TYPE
  M0              3              106
  M1              0               12
D62V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPATA8 MUTATED      3    0
  SPATA8 WILD-TYPE  113    6
     clus
vv    SPATA8 MUTATED SPATA8 WILD-TYPE
  NO               0                6
  YES              3              113

Clustering(63) Variable = GAS2L2 MUTATION ANALYSIS
D63V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
  "GAS2L2 MUTATED" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
  "GAS2L2 MUTATED" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
  "GAS2L2 MUTATED" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D63V2, continuous
D63V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GAS2L2 MUTATED      1    2
  GAS2L2 WILD-TYPE   52   66
        clus
vv       GAS2L2 MUTATED GAS2L2 WILD-TYPE
  COLON               1               52
  RECTUM              2               66
D63V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GAS2L2 MUTATED      2    1
  GAS2L2 WILD-TYPE   68   51
        clus
vv       GAS2L2 MUTATED GAS2L2 WILD-TYPE
  FEMALE              1               51
  MALE                2               68
D63V5, multiclass
                                clus
vv                               GAS2L2 MUTATED GAS2L2 WILD-TYPE
  COLON ADENOCARCINOMA                        1               44
  COLON MUCINOUS ADENOCARCINOMA               0                7
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D63V6, multiclass
    clus
vv   GAS2L2 MUTATED GAS2L2 WILD-TYPE
  T1              1                5
  T2              1               24
  T3              1               83
  T4              0                6
D63V7, multiclass
    clus
vv   GAS2L2 MUTATED GAS2L2 WILD-TYPE
  N0              3               75
  N1              0               22
  N2              0               22
D63V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GAS2L2 MUTATED      3    0
  GAS2L2 WILD-TYPE  106   12
    clus
vv   GAS2L2 MUTATED GAS2L2 WILD-TYPE
  M0              3              106
  M1              0               12
D63V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GAS2L2 MUTATED      3    0
  GAS2L2 WILD-TYPE  113    6
     clus
vv    GAS2L2 MUTATED GAS2L2 WILD-TYPE
  NO               0                6
  YES              3              113

Clustering(64) Variable = GAB3 MUTATION ANALYSIS
D64V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE"   "GAB3 MUTATED" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"GAB3 WILD-TYPE"   "GAB3 MUTATED" "GAB3 WILD-TYPE"   "GAB3 MUTATED" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE"   "GAB3 MUTATED" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"GAB3 WILD-TYPE"   "GAB3 MUTATED" "GAB3 WILD-TYPE"   "GAB3 MUTATED" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE"   "GAB3 MUTATED" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"GAB3 WILD-TYPE"   "GAB3 MUTATED" "GAB3 WILD-TYPE"   "GAB3 MUTATED" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GAB3 WILD-TYPE" "GAB3 WILD-TYPE" "GAB3 WILD-TYPE" 
[1] "hr="     "9200000"
D64V2, continuous
D64V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GAB3 MUTATED      4    1
  GAB3 WILD-TYPE   49   67
        clus
vv       GAB3 MUTATED GAB3 WILD-TYPE
  COLON             4             49
  RECTUM            1             67
D64V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GAB3 MUTATED      0    5
  GAB3 WILD-TYPE   70   47
        clus
vv       GAB3 MUTATED GAB3 WILD-TYPE
  FEMALE            5             47
  MALE              0             70
D64V5, multiclass
                                clus
vv                               GAB3 MUTATED GAB3 WILD-TYPE
  COLON ADENOCARCINOMA                      4             41
  COLON MUCINOUS ADENOCARCINOMA             0              7
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D64V6, multiclass
    clus
vv   GAB3 MUTATED GAB3 WILD-TYPE
  T1            1              5
  T2            2             23
  T3            2             82
  T4            0              6
D64V7, multiclass
    clus
vv   GAB3 MUTATED GAB3 WILD-TYPE
  N0            5             73
  N1            0             22
  N2            0             22
D64V8, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GAB3 MUTATED      5    0
  GAB3 WILD-TYPE  104   12
    clus
vv   GAB3 MUTATED GAB3 WILD-TYPE
  M0            5            104
  M1            0             12
D64V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GAB3 MUTATED      5    0
  GAB3 WILD-TYPE  111    6
     clus
vv    GAB3 MUTATED GAB3 WILD-TYPE
  NO             0              6
  YES            5            111

Clustering(65) Variable = MCF2 MUTATION ANALYSIS
D65V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"MCF2 WILD-TYPE"   "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE"   "MCF2 MUTATED" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
  "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"MCF2 WILD-TYPE"   "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE"   "MCF2 MUTATED" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
  "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"MCF2 WILD-TYPE"   "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE"   "MCF2 MUTATED" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
  "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
[1] "hr="     "9200000"
D65V2, continuous
D65V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MCF2 MUTATED      3    4
  MCF2 WILD-TYPE   50   64
        clus
vv       MCF2 MUTATED MCF2 WILD-TYPE
  COLON             3             50
  RECTUM            4             64
D65V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MCF2 MUTATED      2    5
  MCF2 WILD-TYPE   68   47
        clus
vv       MCF2 MUTATED MCF2 WILD-TYPE
  FEMALE            5             47
  MALE              2             68
D65V5, multiclass
                                clus
vv                               MCF2 MUTATED MCF2 WILD-TYPE
  COLON ADENOCARCINOMA                      1             44
  COLON MUCINOUS ADENOCARCINOMA             2              5
  RECTAL ADENOCARCINOMA                     4             53
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D65V6, multiclass
    clus
vv   MCF2 MUTATED MCF2 WILD-TYPE
  T1            1              5
  T2            3             22
  T3            2             82
  T4            1              5
D65V7, multiclass
    clus
vv   MCF2 MUTATED MCF2 WILD-TYPE
  N0            5             73
  N1            2             20
  N2            0             22
D65V8, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MCF2 MUTATED      7    0
  MCF2 WILD-TYPE  102   12
    clus
vv   MCF2 MUTATED MCF2 WILD-TYPE
  M0            7            102
  M1            0             12
D65V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MCF2 MUTATED      7    0
  MCF2 WILD-TYPE  109    6
     clus
vv    MCF2 MUTATED MCF2 WILD-TYPE
  NO             0              6
  YES            7            109

Clustering(66) Variable = NRG1 MUTATION ANALYSIS
D66V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"NRG1 WILD-TYPE"   "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"NRG1 WILD-TYPE"   "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
  "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE"   "NRG1 MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE"   "NRG1 MUTATED" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"NRG1 WILD-TYPE"   "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"NRG1 WILD-TYPE"   "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
  "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE"   "NRG1 MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE"   "NRG1 MUTATED" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"NRG1 WILD-TYPE"   "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"NRG1 WILD-TYPE"   "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
  "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE"   "NRG1 MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE"   "NRG1 MUTATED" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
[1] "hr="     "7.4e+07"
D66V2, continuous
D66V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRG1 MUTATED      3    5
  NRG1 WILD-TYPE   50   63
        clus
vv       NRG1 MUTATED NRG1 WILD-TYPE
  COLON             3             50
  RECTUM            5             63
D66V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRG1 MUTATED      6    2
  NRG1 WILD-TYPE   64   50
        clus
vv       NRG1 MUTATED NRG1 WILD-TYPE
  FEMALE            2             50
  MALE              6             64
D66V5, multiclass
                                clus
vv                               NRG1 MUTATED NRG1 WILD-TYPE
  COLON ADENOCARCINOMA                      3             42
  COLON MUCINOUS ADENOCARCINOMA             0              7
  RECTAL ADENOCARCINOMA                     5             52
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D66V6, multiclass
    clus
vv   NRG1 MUTATED NRG1 WILD-TYPE
  T1            1              5
  T2            2             23
  T3            5             79
  T4            0              6
D66V7, multiclass
    clus
vv   NRG1 MUTATED NRG1 WILD-TYPE
  N0            6             72
  N1            1             21
  N2            1             21
D66V8, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRG1 MUTATED      8    0
  NRG1 WILD-TYPE  101   12
    clus
vv   NRG1 MUTATED NRG1 WILD-TYPE
  M0            8            101
  M1            0             12
D66V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRG1 MUTATED      8    0
  NRG1 WILD-TYPE  108    6
     clus
vv    NRG1 MUTATED NRG1 WILD-TYPE
  NO             0              6
  YES            8            108

Clustering(67) Variable = MAP7 MUTATION ANALYSIS
D67V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"MAP7 WILD-TYPE"   "MAP7 MUTATED" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"MAP7 WILD-TYPE"   "MAP7 MUTATED" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"MAP7 WILD-TYPE"   "MAP7 MUTATED" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
  "MAP7 MUTATED" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE"   "MAP7 MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"MAP7 WILD-TYPE"   "MAP7 MUTATED" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"MAP7 WILD-TYPE"   "MAP7 MUTATED" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"MAP7 WILD-TYPE"   "MAP7 MUTATED" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
  "MAP7 MUTATED" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE"   "MAP7 MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"MAP7 WILD-TYPE"   "MAP7 MUTATED" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"MAP7 WILD-TYPE"   "MAP7 MUTATED" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"MAP7 WILD-TYPE"   "MAP7 MUTATED" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
  "MAP7 MUTATED" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE"   "MAP7 MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"MAP7 WILD-TYPE" "MAP7 WILD-TYPE" "MAP7 WILD-TYPE" 
[1] "hr="     "9200000"
D67V2, continuous
D67V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MAP7 MUTATED      3    3
  MAP7 WILD-TYPE   50   65
        clus
vv       MAP7 MUTATED MAP7 WILD-TYPE
  COLON             3             50
  RECTUM            3             65
D67V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MAP7 MUTATED      2    4
  MAP7 WILD-TYPE   68   48
        clus
vv       MAP7 MUTATED MAP7 WILD-TYPE
  FEMALE            4             48
  MALE              2             68
D67V5, multiclass
                                clus
vv                               MAP7 MUTATED MAP7 WILD-TYPE
  COLON ADENOCARCINOMA                      1             44
  COLON MUCINOUS ADENOCARCINOMA             2              5
  RECTAL ADENOCARCINOMA                     3             54
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D67V6, multiclass
    clus
vv   MAP7 MUTATED MAP7 WILD-TYPE
  T1            1              5
  T2            2             23
  T3            3             81
  T4            0              6
D67V7, multiclass
    clus
vv   MAP7 MUTATED MAP7 WILD-TYPE
  N0            5             73
  N1            1             21
  N2            0             22
D67V8, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MAP7 MUTATED      6    0
  MAP7 WILD-TYPE  103   12
    clus
vv   MAP7 MUTATED MAP7 WILD-TYPE
  M0            6            103
  M1            0             12
D67V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MAP7 MUTATED      6    0
  MAP7 WILD-TYPE  110    6
     clus
vv    MAP7 MUTATED MAP7 WILD-TYPE
  NO             0              6
  YES            6            110

Clustering(68) Variable = SORCS1 MUTATION ANALYSIS
D68V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
[1] "hr=" NA   
D68V2, continuous
D68V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SORCS1 MUTATED      4    4
  SORCS1 WILD-TYPE   49   64
        clus
vv       SORCS1 MUTATED SORCS1 WILD-TYPE
  COLON               4               49
  RECTUM              4               64
D68V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SORCS1 MUTATED      5    3
  SORCS1 WILD-TYPE   65   49
        clus
vv       SORCS1 MUTATED SORCS1 WILD-TYPE
  FEMALE              3               49
  MALE                5               65
D68V5, multiclass
                                clus
vv                               SORCS1 MUTATED SORCS1 WILD-TYPE
  COLON ADENOCARCINOMA                        3               42
  COLON MUCINOUS ADENOCARCINOMA               1                6
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D68V6, multiclass
    clus
vv   SORCS1 MUTATED SORCS1 WILD-TYPE
  T1              0                6
  T2              1               24
  T3              5               79
  T4              2                4
D68V7, multiclass
    clus
vv   SORCS1 MUTATED SORCS1 WILD-TYPE
  N0              5               73
  N1              2               20
  N2              1               21
D68V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SORCS1 MUTATED      7    1
  SORCS1 WILD-TYPE  102   11
    clus
vv   SORCS1 MUTATED SORCS1 WILD-TYPE
  M0              7              102
  M1              1               11
D68V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SORCS1 MUTATED      8    0
  SORCS1 WILD-TYPE  108    6
     clus
vv    SORCS1 MUTATED SORCS1 WILD-TYPE
  NO               0                6
  YES              8              108

Clustering(69) Variable = DOCK2 MUTATION ANALYSIS
D69V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
[1] "hr="     "8.1e+07"
D69V2, continuous
D69V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DOCK2 MUTATED      6    5
  DOCK2 WILD-TYPE   47   63
        clus
vv       DOCK2 MUTATED DOCK2 WILD-TYPE
  COLON              6              47
  RECTUM             5              63
D69V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DOCK2 MUTATED      6    5
  DOCK2 WILD-TYPE   64   47
        clus
vv       DOCK2 MUTATED DOCK2 WILD-TYPE
  FEMALE             5              47
  MALE               6              64
D69V5, multiclass
                                clus
vv                               DOCK2 MUTATED DOCK2 WILD-TYPE
  COLON ADENOCARCINOMA                       4              41
  COLON MUCINOUS ADENOCARCINOMA              2               5
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D69V6, multiclass
    clus
vv   DOCK2 MUTATED DOCK2 WILD-TYPE
  T1             1               5
  T2             2              23
  T3             7              77
  T4             1               5
D69V7, multiclass
    clus
vv   DOCK2 MUTATED DOCK2 WILD-TYPE
  N0             6              72
  N1             2              20
  N2             3              19
D69V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DOCK2 MUTATED     11    0
  DOCK2 WILD-TYPE   98   12
    clus
vv   DOCK2 MUTATED DOCK2 WILD-TYPE
  M0            11              98
  M1             0              12
D69V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DOCK2 MUTATED     11    0
  DOCK2 WILD-TYPE  105    6
     clus
vv    DOCK2 MUTATED DOCK2 WILD-TYPE
  NO              0               6
  YES            11             105

Clustering(70) Variable = HMCN1 MUTATION ANALYSIS
D70V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
[1] "hr="     "2.7e+08"
D70V2, continuous
D70V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HMCN1 MUTATED      7    8
  HMCN1 WILD-TYPE   46   60
        clus
vv       HMCN1 MUTATED HMCN1 WILD-TYPE
  COLON              7              46
  RECTUM             8              60
D70V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HMCN1 MUTATED     12    3
  HMCN1 WILD-TYPE   58   49
        clus
vv       HMCN1 MUTATED HMCN1 WILD-TYPE
  FEMALE             3              49
  MALE              12              58
D70V5, multiclass
                                clus
vv                               HMCN1 MUTATED HMCN1 WILD-TYPE
  COLON ADENOCARCINOMA                       5              40
  COLON MUCINOUS ADENOCARCINOMA              2               5
  RECTAL ADENOCARCINOMA                      7              50
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D70V6, multiclass
    clus
vv   HMCN1 MUTATED HMCN1 WILD-TYPE
  T1             1               5
  T2             3              22
  T3            10              74
  T4             1               5
D70V7, multiclass
    clus
vv   HMCN1 MUTATED HMCN1 WILD-TYPE
  N0             9              69
  N1             2              20
  N2             4              18
D70V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HMCN1 MUTATED     13    2
  HMCN1 WILD-TYPE   96   10
    clus
vv   HMCN1 MUTATED HMCN1 WILD-TYPE
  M0            13              96
  M1             2              10
D70V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HMCN1 MUTATED     14    1
  HMCN1 WILD-TYPE  102    5
     clus
vv    HMCN1 MUTATED HMCN1 WILD-TYPE
  NO              1               5
  YES            14             102

Clustering(71) Variable = VCAN MUTATION ANALYSIS
D71V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE"   "VCAN MUTATED" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"VCAN WILD-TYPE"   "VCAN MUTATED" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"VCAN WILD-TYPE"   "VCAN MUTATED" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
  "VCAN MUTATED" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE"   "VCAN MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE"   "VCAN MUTATED" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"VCAN WILD-TYPE"   "VCAN MUTATED" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"VCAN WILD-TYPE"   "VCAN MUTATED" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
  "VCAN MUTATED" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE"   "VCAN MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE"   "VCAN MUTATED" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"VCAN WILD-TYPE"   "VCAN MUTATED" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"VCAN WILD-TYPE"   "VCAN MUTATED" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
  "VCAN MUTATED" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE"   "VCAN MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"VCAN WILD-TYPE" "VCAN WILD-TYPE" "VCAN WILD-TYPE" 
[1] "hr="     "2.6e+07"
D71V2, continuous
D71V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  VCAN MUTATED      5    5
  VCAN WILD-TYPE   48   63
        clus
vv       VCAN MUTATED VCAN WILD-TYPE
  COLON             5             48
  RECTUM            5             63
D71V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  VCAN MUTATED      5    5
  VCAN WILD-TYPE   65   47
        clus
vv       VCAN MUTATED VCAN WILD-TYPE
  FEMALE            5             47
  MALE              5             65
D71V5, multiclass
                                clus
vv                               VCAN MUTATED VCAN WILD-TYPE
  COLON ADENOCARCINOMA                      4             41
  COLON MUCINOUS ADENOCARCINOMA             1              6
  RECTAL ADENOCARCINOMA                     5             52
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D71V6, multiclass
    clus
vv   VCAN MUTATED VCAN WILD-TYPE
  T1            1              5
  T2            2             23
  T3            6             78
  T4            1              5
D71V7, multiclass
    clus
vv   VCAN MUTATED VCAN WILD-TYPE
  N0            8             70
  N1            2             20
  N2            0             22
D71V8, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  VCAN MUTATED     10    0
  VCAN WILD-TYPE   99   12
    clus
vv   VCAN MUTATED VCAN WILD-TYPE
  M0           10             99
  M1            0             12
D71V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  VCAN MUTATED     10    0
  VCAN WILD-TYPE  106    6
     clus
vv    VCAN MUTATED VCAN WILD-TYPE
  NO             0              6
  YES           10            106

Clustering(72) Variable = IFT80 MUTATION ANALYSIS
D72V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE"   "IFT80 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE"   "IFT80 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE"   "IFT80 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D72V2, continuous
D72V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  IFT80 MUTATED      3    3
  IFT80 WILD-TYPE   50   65
        clus
vv       IFT80 MUTATED IFT80 WILD-TYPE
  COLON              3              50
  RECTUM             3              65
D72V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  IFT80 MUTATED      3    3
  IFT80 WILD-TYPE   67   49
        clus
vv       IFT80 MUTATED IFT80 WILD-TYPE
  FEMALE             3              49
  MALE               3              67
D72V5, multiclass
                                clus
vv                               IFT80 MUTATED IFT80 WILD-TYPE
  COLON ADENOCARCINOMA                       2              43
  COLON MUCINOUS ADENOCARCINOMA              1               6
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D72V6, multiclass
    clus
vv   IFT80 MUTATED IFT80 WILD-TYPE
  T1             1               5
  T2             2              23
  T3             3              81
  T4             0               6
D72V7, multiclass
    clus
vv   IFT80 MUTATED IFT80 WILD-TYPE
  N0             6              72
  N1             0              22
  N2             0              22
D72V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  IFT80 MUTATED      6    0
  IFT80 WILD-TYPE  103   12
    clus
vv   IFT80 MUTATED IFT80 WILD-TYPE
  M0             6             103
  M1             0              12
D72V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  IFT80 MUTATED      6    0
  IFT80 WILD-TYPE  110    6
     clus
vv    IFT80 MUTATED IFT80 WILD-TYPE
  NO              0               6
  YES             6             110

Clustering(73) Variable = ZIM3 MUTATION ANALYSIS
D73V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
  "ZIM3 MUTATED"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"ZIM3 WILD-TYPE"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
  "ZIM3 MUTATED"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"ZIM3 WILD-TYPE"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
  "ZIM3 MUTATED"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"ZIM3 WILD-TYPE"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
[1] "hr=" "17" 
D73V2, continuous
D73V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZIM3 MUTATED      0    5
  ZIM3 WILD-TYPE   53   63
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  COLON             0             53
  RECTUM            5             63
D73V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZIM3 MUTATED      3    2
  ZIM3 WILD-TYPE   67   50
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  FEMALE            2             50
  MALE              3             67
D73V5, multiclass
                                clus
vv                               ZIM3 MUTATED ZIM3 WILD-TYPE
  COLON ADENOCARCINOMA                      0             45
  COLON MUCINOUS ADENOCARCINOMA             0              7
  RECTAL ADENOCARCINOMA                     4             53
  RECTAL MUCINOUS ADENOCARCINOMA            1              7
D73V6, multiclass
    clus
vv   ZIM3 MUTATED ZIM3 WILD-TYPE
  T1            1              5
  T2            1             24
  T3            2             82
  T4            1              5
D73V7, multiclass
    clus
vv   ZIM3 MUTATED ZIM3 WILD-TYPE
  N0            3             75
  N1            2             20
  N2            0             22
D73V8, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZIM3 MUTATED      5    0
  ZIM3 WILD-TYPE  104   12
    clus
vv   ZIM3 MUTATED ZIM3 WILD-TYPE
  M0            5            104
  M1            0             12
D73V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZIM3 MUTATED      5    0
  ZIM3 WILD-TYPE  111    6
     clus
vv    ZIM3 MUTATED ZIM3 WILD-TYPE
  NO             0              6
  YES            5            111

Clustering(74) Variable = CCBP2 MUTATION ANALYSIS
D74V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "CCBP2 MUTATED" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE"   "CCBP2 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
  "CCBP2 MUTATED" "CCBP2 WILD-TYPE"   "CCBP2 MUTATED" "CCBP2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "CCBP2 MUTATED" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE"   "CCBP2 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
  "CCBP2 MUTATED" "CCBP2 WILD-TYPE"   "CCBP2 MUTATED" "CCBP2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "CCBP2 MUTATED" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE"   "CCBP2 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
  "CCBP2 MUTATED" "CCBP2 WILD-TYPE"   "CCBP2 MUTATED" "CCBP2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
[1] "hr="     "7.4e+07"
D74V2, continuous
D74V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CCBP2 MUTATED      1    5
  CCBP2 WILD-TYPE   52   63
        clus
vv       CCBP2 MUTATED CCBP2 WILD-TYPE
  COLON              1              52
  RECTUM             5              63
D74V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CCBP2 MUTATED      3    3
  CCBP2 WILD-TYPE   67   49
        clus
vv       CCBP2 MUTATED CCBP2 WILD-TYPE
  FEMALE             3              49
  MALE               3              67
D74V5, multiclass
                                clus
vv                               CCBP2 MUTATED CCBP2 WILD-TYPE
  COLON ADENOCARCINOMA                       0              45
  COLON MUCINOUS ADENOCARCINOMA              1               6
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D74V6, multiclass
    clus
vv   CCBP2 MUTATED CCBP2 WILD-TYPE
  T1             1               5
  T2             3              22
  T3             2              82
  T4             0               6
D74V7, multiclass
    clus
vv   CCBP2 MUTATED CCBP2 WILD-TYPE
  N0             6              72
  N1             0              22
  N2             0              22
D74V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CCBP2 MUTATED      6    0
  CCBP2 WILD-TYPE  103   12
    clus
vv   CCBP2 MUTATED CCBP2 WILD-TYPE
  M0             6             103
  M1             0              12
D74V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CCBP2 MUTATED      6    0
  CCBP2 WILD-TYPE  110    6
     clus
vv    CCBP2 MUTATED CCBP2 WILD-TYPE
  NO              0               6
  YES             6             110

Clustering(75) Variable = LUZP2 MUTATION ANALYSIS
D75V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE"   "LUZP2 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE"   "LUZP2 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE"   "LUZP2 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
[1] "Remove cluster labels:" "LUZP2 MUTATED"         
clus
  LUZP2 MUTATED LUZP2 WILD-TYPE 
              1              66 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A008 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A025 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N      TCGA-AG-A02X 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A032      TCGA-AG-A036 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
D75V2, continuous
D75V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LUZP2 MUTATED      1    2
  LUZP2 WILD-TYPE   52   66
        clus
vv       LUZP2 MUTATED LUZP2 WILD-TYPE
  COLON              1              52
  RECTUM             2              66
D75V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LUZP2 MUTATED      2    1
  LUZP2 WILD-TYPE   68   51
        clus
vv       LUZP2 MUTATED LUZP2 WILD-TYPE
  FEMALE             1              51
  MALE               2              68
D75V5, multiclass
                                clus
vv                               LUZP2 MUTATED LUZP2 WILD-TYPE
  COLON ADENOCARCINOMA                       1              44
  COLON MUCINOUS ADENOCARCINOMA              0               7
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D75V6, multiclass
    clus
vv   LUZP2 MUTATED LUZP2 WILD-TYPE
  T1             0               6
  T2             1              24
  T3             2              82
  T4             0               6
D75V7, multiclass
    clus
vv   LUZP2 MUTATED LUZP2 WILD-TYPE
  N0             3              75
  N1             0              22
  N2             0              22
D75V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LUZP2 MUTATED      3    0
  LUZP2 WILD-TYPE  106   12
    clus
vv   LUZP2 MUTATED LUZP2 WILD-TYPE
  M0             3             106
  M1             0              12
D75V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LUZP2 MUTATED      3    0
  LUZP2 WILD-TYPE  113    6
     clus
vv    LUZP2 MUTATED LUZP2 WILD-TYPE
  NO              0               6
  YES             3             113

Clustering(76) Variable = CYP19A1 MUTATION ANALYSIS
D76V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CYP19A1 WILD-TYPE"   "CYP19A1 MUTATED" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-AA-3518 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-A00A 
"CYP19A1 WILD-TYPE"   "CYP19A1 MUTATED" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00Q        TCGA-AA-A00R 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A01F 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01Q        TCGA-AF-2689        TCGA-AF-2691 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3581 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587        TCGA-AG-3599 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3887 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3999 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-A002 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE"   "CYP19A1 MUTATED" 
       TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H        TCGA-AG-A00Y 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE"   "CYP19A1 MUTATED" 
       TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015        TCGA-AG-A016 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02N 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CYP19A1 WILD-TYPE"   "CYP19A1 MUTATED" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-AA-3518 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-A00A 
"CYP19A1 WILD-TYPE"   "CYP19A1 MUTATED" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00Q        TCGA-AA-A00R 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A01F 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01Q        TCGA-AF-2689        TCGA-AF-2691 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3581 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587        TCGA-AG-3599 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3887 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3999 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-A002 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE"   "CYP19A1 MUTATED" 
       TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H        TCGA-AG-A00Y 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE"   "CYP19A1 MUTATED" 
       TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015        TCGA-AG-A016 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02N 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CYP19A1 WILD-TYPE"   "CYP19A1 MUTATED" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-AA-3518 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-A00A 
"CYP19A1 WILD-TYPE"   "CYP19A1 MUTATED" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00Q        TCGA-AA-A00R 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A01F 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01Q        TCGA-AF-2689        TCGA-AF-2691 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3581 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587        TCGA-AG-3599 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3887 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3999 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-A002 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE"   "CYP19A1 MUTATED" 
       TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H        TCGA-AG-A00Y 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE"   "CYP19A1 MUTATED" 
       TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015        TCGA-AG-A016 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02N 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
[1] "hr="     "7.4e+07"
D76V2, continuous
D76V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CYP19A1 MUTATED      3    3
  CYP19A1 WILD-TYPE   50   65
        clus
vv       CYP19A1 MUTATED CYP19A1 WILD-TYPE
  COLON                3                50
  RECTUM               3                65
D76V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CYP19A1 MUTATED      3    3
  CYP19A1 WILD-TYPE   67   49
        clus
vv       CYP19A1 MUTATED CYP19A1 WILD-TYPE
  FEMALE               3                49
  MALE                 3                67
D76V5, multiclass
                                clus
vv                               CYP19A1 MUTATED CYP19A1 WILD-TYPE
  COLON ADENOCARCINOMA                         1                44
  COLON MUCINOUS ADENOCARCINOMA                2                 5
  RECTAL ADENOCARCINOMA                        3                54
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D76V6, multiclass
    clus
vv   CYP19A1 MUTATED CYP19A1 WILD-TYPE
  T1               0                 6
  T2               1                24
  T3               4                80
  T4               1                 5
D76V7, multiclass
    clus
vv   CYP19A1 MUTATED CYP19A1 WILD-TYPE
  N0               3                75
  N1               2                20
  N2               1                21
D76V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CYP19A1 MUTATED      6    0
  CYP19A1 WILD-TYPE  103   12
    clus
vv   CYP19A1 MUTATED CYP19A1 WILD-TYPE
  M0               6               103
  M1               0                12
D76V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CYP19A1 MUTATED      6    0
  CYP19A1 WILD-TYPE  110    6
     clus
vv    CYP19A1 MUTATED CYP19A1 WILD-TYPE
  NO                0                 6
  YES               6               110

Clustering(77) Variable = GFRA1 MUTATION ANALYSIS
D77V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE"   "GFRA1 MUTATED" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "GFRA1 MUTATED" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE"   "GFRA1 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
  "GFRA1 MUTATED" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"GFRA1 WILD-TYPE"   "GFRA1 MUTATED" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE"   "GFRA1 MUTATED" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "GFRA1 MUTATED" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE"   "GFRA1 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
  "GFRA1 MUTATED" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"GFRA1 WILD-TYPE"   "GFRA1 MUTATED" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE"   "GFRA1 MUTATED" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "GFRA1 MUTATED" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE"   "GFRA1 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
  "GFRA1 MUTATED" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"GFRA1 WILD-TYPE"   "GFRA1 MUTATED" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
[1] "hr="     "7.4e+07"
D77V2, continuous
D77V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GFRA1 MUTATED      1    5
  GFRA1 WILD-TYPE   52   63
        clus
vv       GFRA1 MUTATED GFRA1 WILD-TYPE
  COLON              1              52
  RECTUM             5              63
D77V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GFRA1 MUTATED      2    4
  GFRA1 WILD-TYPE   68   48
        clus
vv       GFRA1 MUTATED GFRA1 WILD-TYPE
  FEMALE             4              48
  MALE               2              68
D77V5, multiclass
                                clus
vv                               GFRA1 MUTATED GFRA1 WILD-TYPE
  COLON ADENOCARCINOMA                       1              44
  COLON MUCINOUS ADENOCARCINOMA              0               7
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             2               6
D77V6, multiclass
    clus
vv   GFRA1 MUTATED GFRA1 WILD-TYPE
  T1             1               5
  T2             3              22
  T3             2              82
  T4             0               6
D77V7, multiclass
    clus
vv   GFRA1 MUTATED GFRA1 WILD-TYPE
  N0             5              73
  N1             1              21
  N2             0              22
D77V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GFRA1 MUTATED      6    0
  GFRA1 WILD-TYPE  103   12
    clus
vv   GFRA1 MUTATED GFRA1 WILD-TYPE
  M0             6             103
  M1             0              12
D77V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GFRA1 MUTATED      6    0
  GFRA1 WILD-TYPE  110    6
     clus
vv    GFRA1 MUTATED GFRA1 WILD-TYPE
  NO              0               6
  YES             6             110

Clustering(78) Variable = CTSO MUTATION ANALYSIS
D78V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"CTSO WILD-TYPE"   "CTSO MUTATED" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
  "CTSO MUTATED" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"CTSO WILD-TYPE"   "CTSO MUTATED" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE"   "CTSO MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"CTSO WILD-TYPE"   "CTSO MUTATED" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
  "CTSO MUTATED" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"CTSO WILD-TYPE"   "CTSO MUTATED" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE"   "CTSO MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"CTSO WILD-TYPE"   "CTSO MUTATED" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
  "CTSO MUTATED" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"CTSO WILD-TYPE"   "CTSO MUTATED" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE"   "CTSO MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
[1] "hr="     "7.4e+07"
D78V2, continuous
D78V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CTSO MUTATED      3    2
  CTSO WILD-TYPE   50   66
        clus
vv       CTSO MUTATED CTSO WILD-TYPE
  COLON             3             50
  RECTUM            2             66
D78V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CTSO MUTATED      4    1
  CTSO WILD-TYPE   66   51
        clus
vv       CTSO MUTATED CTSO WILD-TYPE
  FEMALE            1             51
  MALE              4             66
D78V5, multiclass
                                clus
vv                               CTSO MUTATED CTSO WILD-TYPE
  COLON ADENOCARCINOMA                      3             42
  COLON MUCINOUS ADENOCARCINOMA             0              7
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D78V6, multiclass
    clus
vv   CTSO MUTATED CTSO WILD-TYPE
  T1            0              6
  T2            1             24
  T3            4             80
  T4            0              6
D78V7, multiclass
    clus
vv   CTSO MUTATED CTSO WILD-TYPE
  N0            4             74
  N1            1             21
  N2            0             22
D78V8, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CTSO MUTATED      5    0
  CTSO WILD-TYPE  104   12
    clus
vv   CTSO MUTATED CTSO WILD-TYPE
  M0            5            104
  M1            0             12
D78V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CTSO MUTATED      5    0
  CTSO WILD-TYPE  111    6
     clus
vv    CTSO MUTATED CTSO WILD-TYPE
  NO             0              6
  YES            5            111

Clustering(79) Variable = KCNB2 MUTATION ANALYSIS
D79V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"KCNB2 WILD-TYPE"   "KCNB2 MUTATED"   "KCNB2 MUTATED" "KCNB2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE"   "KCNB2 MUTATED" "KCNB2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE"   "KCNB2 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE"   "KCNB2 MUTATED" "KCNB2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"KCNB2 WILD-TYPE"   "KCNB2 MUTATED" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"KCNB2 WILD-TYPE"   "KCNB2 MUTATED"   "KCNB2 MUTATED" "KCNB2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE"   "KCNB2 MUTATED" "KCNB2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE"   "KCNB2 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE"   "KCNB2 MUTATED" "KCNB2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"KCNB2 WILD-TYPE"   "KCNB2 MUTATED" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"KCNB2 WILD-TYPE"   "KCNB2 MUTATED"   "KCNB2 MUTATED" "KCNB2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE"   "KCNB2 MUTATED" "KCNB2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE"   "KCNB2 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE"   "KCNB2 MUTATED" "KCNB2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"KCNB2 WILD-TYPE"   "KCNB2 MUTATED" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
[1] "hr=" "17" 
D79V2, continuous
D79V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNB2 MUTATED      2    5
  KCNB2 WILD-TYPE   51   63
        clus
vv       KCNB2 MUTATED KCNB2 WILD-TYPE
  COLON              2              51
  RECTUM             5              63
D79V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNB2 MUTATED      6    1
  KCNB2 WILD-TYPE   64   51
        clus
vv       KCNB2 MUTATED KCNB2 WILD-TYPE
  FEMALE             1              51
  MALE               6              64
D79V5, multiclass
                                clus
vv                               KCNB2 MUTATED KCNB2 WILD-TYPE
  COLON ADENOCARCINOMA                       1              44
  COLON MUCINOUS ADENOCARCINOMA              1               6
  RECTAL ADENOCARCINOMA                      5              52
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D79V6, multiclass
    clus
vv   KCNB2 MUTATED KCNB2 WILD-TYPE
  T1             0               6
  T2             3              22
  T3             3              81
  T4             1               5
D79V7, multiclass
    clus
vv   KCNB2 MUTATED KCNB2 WILD-TYPE
  N0             6              72
  N1             0              22
  N2             1              21
D79V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNB2 MUTATED      7    0
  KCNB2 WILD-TYPE  102   12
    clus
vv   KCNB2 MUTATED KCNB2 WILD-TYPE
  M0             7             102
  M1             0              12
D79V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNB2 MUTATED      7    0
  KCNB2 WILD-TYPE  109    6
     clus
vv    KCNB2 MUTATED KCNB2 WILD-TYPE
  NO              0               6
  YES             7             109

Clustering(80) Variable = MGC42105 MUTATION ANALYSIS
D80V1, survival
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2683         TCGA-AA-3518         TCGA-AA-3526 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-A00A 
  "MGC42105 MUTATED" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00Q         TCGA-AA-A00R         TCGA-AA-A00U 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00W         TCGA-AA-A00Z         TCGA-AA-A01F 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01G         TCGA-AA-A01Q         TCGA-AF-2689 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-3400 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3581         TCGA-AG-3582 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3587         TCGA-AG-3599 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3726         TCGA-AG-3727         TCGA-AG-3878 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3892         TCGA-AG-3893 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3999         TCGA-AG-4001 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-A002 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE"   "MGC42105 MUTATED" 
        TCGA-AG-A008         TCGA-AG-A00C         TCGA-AG-A00H 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A00Y         TCGA-AG-A011         TCGA-AG-A014 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A015         TCGA-AG-A016         TCGA-AG-A01L 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A01W         TCGA-AG-A01Y         TCGA-AG-A020 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A025         TCGA-AG-A026         TCGA-AG-A02G 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A02N         TCGA-AG-A02X         TCGA-AG-A032 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A036 
"MGC42105 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2683         TCGA-AA-3518         TCGA-AA-3526 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-A00A 
  "MGC42105 MUTATED" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00Q         TCGA-AA-A00R         TCGA-AA-A00U 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00W         TCGA-AA-A00Z         TCGA-AA-A01F 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01G         TCGA-AA-A01Q         TCGA-AF-2689 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-3400 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3581         TCGA-AG-3582 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3587         TCGA-AG-3599 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3726         TCGA-AG-3727         TCGA-AG-3878 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3892         TCGA-AG-3893 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3999         TCGA-AG-4001 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-A002 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE"   "MGC42105 MUTATED" 
        TCGA-AG-A008         TCGA-AG-A00C         TCGA-AG-A00H 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A00Y         TCGA-AG-A011         TCGA-AG-A014 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A015         TCGA-AG-A016         TCGA-AG-A01L 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A01W         TCGA-AG-A01Y         TCGA-AG-A020 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A025         TCGA-AG-A026         TCGA-AG-A02G 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A02N         TCGA-AG-A02X         TCGA-AG-A032 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A036 
"MGC42105 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2683         TCGA-AA-3518         TCGA-AA-3526 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-A00A 
  "MGC42105 MUTATED" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00Q         TCGA-AA-A00R         TCGA-AA-A00U 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00W         TCGA-AA-A00Z         TCGA-AA-A01F 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01G         TCGA-AA-A01Q         TCGA-AF-2689 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-3400 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3581         TCGA-AG-3582 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3583         TCGA-AG-3587         TCGA-AG-3599 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3726         TCGA-AG-3727         TCGA-AG-3878 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3887         TCGA-AG-3892         TCGA-AG-3893 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3999         TCGA-AG-4001 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-A002 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE"   "MGC42105 MUTATED" 
        TCGA-AG-A008         TCGA-AG-A00C         TCGA-AG-A00H 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A00Y         TCGA-AG-A011         TCGA-AG-A014 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A015         TCGA-AG-A016         TCGA-AG-A01L 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A01W         TCGA-AG-A01Y         TCGA-AG-A020 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A025         TCGA-AG-A026         TCGA-AG-A02G 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A02N         TCGA-AG-A02X         TCGA-AG-A032 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A036 
"MGC42105 WILD-TYPE" 
[1] "Remove cluster labels:" "MGC42105 MUTATED"      
clus
  MGC42105 MUTATED MGC42105 WILD-TYPE 
                 2                 65 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2683         TCGA-AA-3518         TCGA-AA-3526 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3562         TCGA-AA-A00A         TCGA-AA-A00D 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00Q 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A01F         TCGA-AA-A01G 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AF-2689         TCGA-AF-2691 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A008         TCGA-AG-A00C 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A01W         TCGA-AG-A01Y 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A020         TCGA-AG-A025         TCGA-AG-A026 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02N         TCGA-AG-A02X 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A032         TCGA-AG-A036 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
D80V2, continuous
D80V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  MGC42105 MUTATED      4    1
  MGC42105 WILD-TYPE   49   67
        clus
vv       MGC42105 MUTATED MGC42105 WILD-TYPE
  COLON                 4                 49
  RECTUM                1                 67
D80V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  MGC42105 MUTATED      3    2
  MGC42105 WILD-TYPE   67   50
        clus
vv       MGC42105 MUTATED MGC42105 WILD-TYPE
  FEMALE                2                 50
  MALE                  3                 67
D80V5, multiclass
                                clus
vv                               MGC42105 MUTATED MGC42105 WILD-TYPE
  COLON ADENOCARCINOMA                          3                 42
  COLON MUCINOUS ADENOCARCINOMA                 1                  6
  RECTAL ADENOCARCINOMA                         1                 56
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
D80V6, multiclass
    clus
vv   MGC42105 MUTATED MGC42105 WILD-TYPE
  T1                0                  6
  T2                2                 23
  T3                3                 81
  T4                0                  6
D80V7, multiclass
    clus
vv   MGC42105 MUTATED MGC42105 WILD-TYPE
  N0                5                 73
  N1                0                 22
  N2                0                 22
D80V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  MGC42105 MUTATED      4    0
  MGC42105 WILD-TYPE  105   12
    clus
vv   MGC42105 MUTATED MGC42105 WILD-TYPE
  M0                4                105
  M1                0                 12
D80V9, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  MGC42105 MUTATED      5    0
  MGC42105 WILD-TYPE  111    6
     clus
vv    MGC42105 MUTATED MGC42105 WILD-TYPE
  NO                 0                  6
  YES                5                111

Clustering(81) Variable = CFHR5 MUTATION ANALYSIS
D81V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE"   "CFHR5 MUTATED" "CFHR5 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE"   "CFHR5 MUTATED" "CFHR5 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE"   "CFHR5 MUTATED" "CFHR5 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
[1] "Remove cluster labels:" "CFHR5 MUTATED"         
clus
  CFHR5 MUTATED CFHR5 WILD-TYPE 
              1              66 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A020      TCGA-AG-A025 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N      TCGA-AG-A02X 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A032      TCGA-AG-A036 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
D81V2, continuous
D81V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CFHR5 MUTATED      1    3
  CFHR5 WILD-TYPE   52   65
        clus
vv       CFHR5 MUTATED CFHR5 WILD-TYPE
  COLON              1              52
  RECTUM             3              65
D81V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CFHR5 MUTATED      1    3
  CFHR5 WILD-TYPE   69   49
        clus
vv       CFHR5 MUTATED CFHR5 WILD-TYPE
  FEMALE             3              49
  MALE               1              69
D81V5, multiclass
                                clus
vv                               CFHR5 MUTATED CFHR5 WILD-TYPE
  COLON ADENOCARCINOMA                       1              44
  COLON MUCINOUS ADENOCARCINOMA              0               7
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D81V6, multiclass
    clus
vv   CFHR5 MUTATED CFHR5 WILD-TYPE
  T1             0               6
  T2             0              25
  T3             4              80
  T4             0               6
D81V7, multiclass
    clus
vv   CFHR5 MUTATED CFHR5 WILD-TYPE
  N0             4              74
  N1             0              22
  N2             0              22
D81V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CFHR5 MUTATED      4    0
  CFHR5 WILD-TYPE  105   12
    clus
vv   CFHR5 MUTATED CFHR5 WILD-TYPE
  M0             4             105
  M1             0              12
D81V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CFHR5 MUTATED      4    0
  CFHR5 WILD-TYPE  112    6
     clus
vv    CFHR5 MUTATED CFHR5 WILD-TYPE
  NO              0               6
  YES             4             112

Clustering(82) Variable = ADAM18 MUTATION ANALYSIS
D82V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE"   "ADAM18 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE"   "ADAM18 MUTATED" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE"   "ADAM18 MUTATED" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE"   "ADAM18 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE"   "ADAM18 MUTATED" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE"   "ADAM18 MUTATED" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE"   "ADAM18 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE"   "ADAM18 MUTATED" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE"   "ADAM18 MUTATED" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" "ADAM18 WILD-TYPE" 
[1] "hr="     "7.9e+07"
D82V2, continuous
D82V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ADAM18 MUTATED      1    3
  ADAM18 WILD-TYPE   52   65
        clus
vv       ADAM18 MUTATED ADAM18 WILD-TYPE
  COLON               1               52
  RECTUM              3               65
D82V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ADAM18 MUTATED      2    2
  ADAM18 WILD-TYPE   68   50
        clus
vv       ADAM18 MUTATED ADAM18 WILD-TYPE
  FEMALE              2               50
  MALE                2               68
D82V5, multiclass
                                clus
vv                               ADAM18 MUTATED ADAM18 WILD-TYPE
  COLON ADENOCARCINOMA                        0               45
  COLON MUCINOUS ADENOCARCINOMA               1                6
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D82V6, multiclass
    clus
vv   ADAM18 MUTATED ADAM18 WILD-TYPE
  T1              0                6
  T2              1               24
  T3              2               82
  T4              0                6
D82V7, multiclass
    clus
vv   ADAM18 MUTATED ADAM18 WILD-TYPE
  N0              3               75
  N1              0               22
  N2              1               21
D82V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ADAM18 MUTATED      4    0
  ADAM18 WILD-TYPE  105   12
    clus
vv   ADAM18 MUTATED ADAM18 WILD-TYPE
  M0              4              105
  M1              0               12
D82V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ADAM18 MUTATED      3    1
  ADAM18 WILD-TYPE  113    5
     clus
vv    ADAM18 MUTATED ADAM18 WILD-TYPE
  NO               1                5
  YES              3              113

Clustering(83) Variable = FAM133A MUTATION ANALYSIS
D83V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-AA-3518 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-A00A 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00Q        TCGA-AA-A00R 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A01F 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01Q        TCGA-AF-2689        TCGA-AF-2691 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3581 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587        TCGA-AG-3599 
"FAM133A WILD-TYPE"   "FAM133A MUTATED" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3887 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3999 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-A002 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H        TCGA-AG-A00Y 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015        TCGA-AG-A016 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02N 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
  "FAM133A MUTATED" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-AA-3518 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-A00A 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00Q        TCGA-AA-A00R 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A01F 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01Q        TCGA-AF-2689        TCGA-AF-2691 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3581 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587        TCGA-AG-3599 
"FAM133A WILD-TYPE"   "FAM133A MUTATED" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3887 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3999 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-A002 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H        TCGA-AG-A00Y 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015        TCGA-AG-A016 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02N 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
  "FAM133A MUTATED" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-AA-3518 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-A00A 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00Q        TCGA-AA-A00R 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A01F 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01Q        TCGA-AF-2689        TCGA-AF-2691 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3581 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587        TCGA-AG-3599 
"FAM133A WILD-TYPE"   "FAM133A MUTATED" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3887 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3999 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-A002 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H        TCGA-AG-A00Y 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015        TCGA-AG-A016 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02N 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
  "FAM133A MUTATED" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
[1] "Remove cluster labels:" "FAM133A MUTATED"       
clus
  FAM133A MUTATED FAM133A WILD-TYPE 
                2                65 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-AA-3518 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-A00A 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00Q        TCGA-AA-A00R 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A01F 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01Q        TCGA-AF-2689        TCGA-AF-2691 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3581 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3587        TCGA-AG-3599        TCGA-AG-3726 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3887        TCGA-AG-3892 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3999        TCGA-AG-4001 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-A002        TCGA-AG-A008 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A00C        TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A014        TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020        TCGA-AG-A025 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02N        TCGA-AG-A032 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A036 
"FAM133A WILD-TYPE" 
D83V2, continuous
D83V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM133A MUTATED      1    2
  FAM133A WILD-TYPE   52   66
        clus
vv       FAM133A MUTATED FAM133A WILD-TYPE
  COLON                1                52
  RECTUM               2                66
D83V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM133A MUTATED      2    1
  FAM133A WILD-TYPE   68   51
        clus
vv       FAM133A MUTATED FAM133A WILD-TYPE
  FEMALE               1                51
  MALE                 2                68
D83V5, multiclass
                                clus
vv                               FAM133A MUTATED FAM133A WILD-TYPE
  COLON ADENOCARCINOMA                         1                44
  COLON MUCINOUS ADENOCARCINOMA                0                 7
  RECTAL ADENOCARCINOMA                        1                56
  RECTAL MUCINOUS ADENOCARCINOMA               1                 7
D83V6, multiclass
    clus
vv   FAM133A MUTATED FAM133A WILD-TYPE
  T1               0                 6
  T2               1                24
  T3               2                82
  T4               0                 6
D83V7, multiclass
    clus
vv   FAM133A MUTATED FAM133A WILD-TYPE
  N0               2                76
  N1               0                22
  N2               1                21
D83V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM133A MUTATED      2    1
  FAM133A WILD-TYPE  107   11
    clus
vv   FAM133A MUTATED FAM133A WILD-TYPE
  M0               2               107
  M1               1                11
D83V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM133A MUTATED      3    0
  FAM133A WILD-TYPE  113    6
     clus
vv    FAM133A MUTATED FAM133A WILD-TYPE
  NO                0                 6
  YES               3               113

Clustering(84) Variable = RAD21 MUTATION ANALYSIS
D84V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"RAD21 WILD-TYPE"   "RAD21 MUTATED" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"RAD21 WILD-TYPE"   "RAD21 MUTATED" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
  "RAD21 MUTATED" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"RAD21 WILD-TYPE"   "RAD21 MUTATED" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"RAD21 WILD-TYPE"   "RAD21 MUTATED" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
  "RAD21 MUTATED" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"RAD21 WILD-TYPE"   "RAD21 MUTATED" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"RAD21 WILD-TYPE"   "RAD21 MUTATED" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
  "RAD21 MUTATED" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RAD21 WILD-TYPE" "RAD21 WILD-TYPE" "RAD21 WILD-TYPE" 
[1] "hr="     "9200000"
D84V2, continuous
D84V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RAD21 MUTATED      3    2
  RAD21 WILD-TYPE   50   66
        clus
vv       RAD21 MUTATED RAD21 WILD-TYPE
  COLON              3              50
  RECTUM             2              66
D84V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RAD21 MUTATED      1    4
  RAD21 WILD-TYPE   69   48
        clus
vv       RAD21 MUTATED RAD21 WILD-TYPE
  FEMALE             4              48
  MALE               1              69
D84V5, multiclass
                                clus
vv                               RAD21 MUTATED RAD21 WILD-TYPE
  COLON ADENOCARCINOMA                       1              44
  COLON MUCINOUS ADENOCARCINOMA              2               5
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D84V6, multiclass
    clus
vv   RAD21 MUTATED RAD21 WILD-TYPE
  T1             0               6
  T2             1              24
  T3             4              80
  T4             0               6
D84V7, multiclass
    clus
vv   RAD21 MUTATED RAD21 WILD-TYPE
  N0             4              74
  N1             0              22
  N2             1              21
D84V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RAD21 MUTATED      5    0
  RAD21 WILD-TYPE  104   12
    clus
vv   RAD21 MUTATED RAD21 WILD-TYPE
  M0             5             104
  M1             0              12
D84V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RAD21 MUTATED      5    0
  RAD21 WILD-TYPE  111    6
     clus
vv    RAD21 MUTATED RAD21 WILD-TYPE
  NO              0               6
  YES             5             111

Clustering(85) Variable = BMPR2 MUTATION ANALYSIS
D85V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "BMPR2 MUTATED" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"BMPR2 WILD-TYPE"   "BMPR2 MUTATED" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE"   "BMPR2 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "BMPR2 MUTATED" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"BMPR2 WILD-TYPE"   "BMPR2 MUTATED" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE"   "BMPR2 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "BMPR2 MUTATED" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"BMPR2 WILD-TYPE"   "BMPR2 MUTATED" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE"   "BMPR2 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
[1] "hr="     "7.4e+07"
D85V2, continuous
D85V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BMPR2 MUTATED      5    1
  BMPR2 WILD-TYPE   48   67
        clus
vv       BMPR2 MUTATED BMPR2 WILD-TYPE
  COLON              5              48
  RECTUM             1              67
D85V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BMPR2 MUTATED      4    2
  BMPR2 WILD-TYPE   66   50
        clus
vv       BMPR2 MUTATED BMPR2 WILD-TYPE
  FEMALE             2              50
  MALE               4              66
D85V5, multiclass
                                clus
vv                               BMPR2 MUTATED BMPR2 WILD-TYPE
  COLON ADENOCARCINOMA                       4              41
  COLON MUCINOUS ADENOCARCINOMA              1               6
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D85V6, multiclass
    clus
vv   BMPR2 MUTATED BMPR2 WILD-TYPE
  T1             0               6
  T2             1              24
  T3             5              79
  T4             0               6
D85V7, multiclass
    clus
vv   BMPR2 MUTATED BMPR2 WILD-TYPE
  N0             4              74
  N1             1              21
  N2             1              21
D85V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BMPR2 MUTATED      6    0
  BMPR2 WILD-TYPE  103   12
    clus
vv   BMPR2 MUTATED BMPR2 WILD-TYPE
  M0             6             103
  M1             0              12
D85V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BMPR2 MUTATED      6    0
  BMPR2 WILD-TYPE  110    6
     clus
vv    BMPR2 MUTATED BMPR2 WILD-TYPE
  NO              0               6
  YES             6             110

Clustering(86) Variable = DPYD MUTATION ANALYSIS
D86V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE"   "DPYD MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
  "DPYD MUTATED" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE"   "DPYD MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
  "DPYD MUTATED" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE"   "DPYD MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
  "DPYD MUTATED" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE"   "DPYD MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
  "DPYD MUTATED" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE"   "DPYD MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
  "DPYD MUTATED" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE"   "DPYD MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
  "DPYD MUTATED" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
[1] "hr="   "8e+07"
D86V2, continuous
D86V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DPYD MUTATED      2    4
  DPYD WILD-TYPE   51   64
        clus
vv       DPYD MUTATED DPYD WILD-TYPE
  COLON             2             51
  RECTUM            4             64
D86V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DPYD MUTATED      1    6
  DPYD WILD-TYPE   69   46
        clus
vv       DPYD MUTATED DPYD WILD-TYPE
  FEMALE            6             46
  MALE              1             69
D86V5, multiclass
                                clus
vv                               DPYD MUTATED DPYD WILD-TYPE
  COLON ADENOCARCINOMA                      0             45
  COLON MUCINOUS ADENOCARCINOMA             2              5
  RECTAL ADENOCARCINOMA                     4             53
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D86V6, multiclass
    clus
vv   DPYD MUTATED DPYD WILD-TYPE
  T1            1              5
  T2            1             24
  T3            4             80
  T4            0              6
D86V7, multiclass
    clus
vv   DPYD MUTATED DPYD WILD-TYPE
  N0            4             74
  N1            2             20
  N2            1             21
D86V8, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DPYD MUTATED      7    0
  DPYD WILD-TYPE  102   12
    clus
vv   DPYD MUTATED DPYD WILD-TYPE
  M0            7            102
  M1            0             12
D86V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DPYD MUTATED      6    1
  DPYD WILD-TYPE  110    5
     clus
vv    DPYD MUTATED DPYD WILD-TYPE
  NO             1              5
  YES            6            110

Clustering(87) Variable = C4BPA MUTATION ANALYSIS
D87V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE"   "C4BPA MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
  "C4BPA MUTATED" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "C4BPA MUTATED" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE"   "C4BPA MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE"   "C4BPA MUTATED" "C4BPA WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE"   "C4BPA MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
  "C4BPA MUTATED" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "C4BPA MUTATED" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE"   "C4BPA MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE"   "C4BPA MUTATED" "C4BPA WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE"   "C4BPA MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
  "C4BPA MUTATED" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "C4BPA MUTATED" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE"   "C4BPA MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE"   "C4BPA MUTATED" "C4BPA WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"C4BPA WILD-TYPE" "C4BPA WILD-TYPE" "C4BPA WILD-TYPE" 
[1] "hr="   "8e+07"
D87V2, continuous
D87V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  C4BPA MUTATED      1    4
  C4BPA WILD-TYPE   52   64
        clus
vv       C4BPA MUTATED C4BPA WILD-TYPE
  COLON              1              52
  RECTUM             4              64
D87V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  C4BPA MUTATED      2    4
  C4BPA WILD-TYPE   68   48
        clus
vv       C4BPA MUTATED C4BPA WILD-TYPE
  FEMALE             4              48
  MALE               2              68
D87V5, multiclass
                                clus
vv                               C4BPA MUTATED C4BPA WILD-TYPE
  COLON ADENOCARCINOMA                       0              45
  COLON MUCINOUS ADENOCARCINOMA              1               6
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D87V6, multiclass
    clus
vv   C4BPA MUTATED C4BPA WILD-TYPE
  T1             1               5
  T2             1              24
  T3             3              81
  T4             0               6
D87V7, multiclass
    clus
vv   C4BPA MUTATED C4BPA WILD-TYPE
  N0             6              72
  N1             0              22
  N2             0              22
D87V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  C4BPA MUTATED      6    0
  C4BPA WILD-TYPE  103   12
    clus
vv   C4BPA MUTATED C4BPA WILD-TYPE
  M0             6             103
  M1             0              12
D87V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  C4BPA MUTATED      5    1
  C4BPA WILD-TYPE  111    5
     clus
vv    C4BPA MUTATED C4BPA WILD-TYPE
  NO              1               5
  YES             5             111

Clustering(88) Variable = F13A1 MUTATION ANALYSIS
D88V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE"   "F13A1 MUTATED" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE"   "F13A1 MUTATED" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE"   "F13A1 MUTATED" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
[1] "Remove cluster labels:" "F13A1 MUTATED"         
clus
  F13A1 MUTATED F13A1 WILD-TYPE 
              1              66 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3526 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A      TCGA-AA-A00D 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F      TCGA-AA-A01G 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581      TCGA-AG-3582 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599      TCGA-AG-3726 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887      TCGA-AG-3892 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999      TCGA-AG-4001 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002      TCGA-AG-A008 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A025 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N      TCGA-AG-A02X 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A032      TCGA-AG-A036 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
D88V2, continuous
D88V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  F13A1 MUTATED      3    2
  F13A1 WILD-TYPE   50   66
        clus
vv       F13A1 MUTATED F13A1 WILD-TYPE
  COLON              3              50
  RECTUM             2              66
D88V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  F13A1 MUTATED      3    2
  F13A1 WILD-TYPE   67   50
        clus
vv       F13A1 MUTATED F13A1 WILD-TYPE
  FEMALE             2              50
  MALE               3              67
D88V5, multiclass
                                clus
vv                               F13A1 MUTATED F13A1 WILD-TYPE
  COLON ADENOCARCINOMA                       3              42
  COLON MUCINOUS ADENOCARCINOMA              0               7
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D88V6, multiclass
    clus
vv   F13A1 MUTATED F13A1 WILD-TYPE
  T1             0               6
  T2             0              25
  T3             4              80
  T4             1               5
D88V7, multiclass
    clus
vv   F13A1 MUTATED F13A1 WILD-TYPE
  N0             2              76
  N1             3              19
  N2             0              22
D88V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  F13A1 MUTATED      4    1
  F13A1 WILD-TYPE  105   11
    clus
vv   F13A1 MUTATED F13A1 WILD-TYPE
  M0             4             105
  M1             1              11
D88V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  F13A1 MUTATED      5    0
  F13A1 WILD-TYPE  111    6
     clus
vv    F13A1 MUTATED F13A1 WILD-TYPE
  NO              0               6
  YES             5             111

Clustering(89) Variable = FREM2 MUTATION ANALYSIS
D89V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "FREM2 MUTATED"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "FREM2 MUTATED"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "FREM2 MUTATED"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
[1] "hr="   "8e+07"
D89V2, continuous
D89V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FREM2 MUTATED      5    5
  FREM2 WILD-TYPE   48   63
        clus
vv       FREM2 MUTATED FREM2 WILD-TYPE
  COLON              5              48
  RECTUM             5              63
D89V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FREM2 MUTATED      4    6
  FREM2 WILD-TYPE   66   46
        clus
vv       FREM2 MUTATED FREM2 WILD-TYPE
  FEMALE             6              46
  MALE               4              66
D89V5, multiclass
                                clus
vv                               FREM2 MUTATED FREM2 WILD-TYPE
  COLON ADENOCARCINOMA                       4              41
  COLON MUCINOUS ADENOCARCINOMA              1               6
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D89V6, multiclass
    clus
vv   FREM2 MUTATED FREM2 WILD-TYPE
  T1             1               5
  T2             2              23
  T3             6              78
  T4             1               5
D89V7, multiclass
    clus
vv   FREM2 MUTATED FREM2 WILD-TYPE
  N0             6              72
  N1             3              19
  N2             1              21
D89V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FREM2 MUTATED     10    0
  FREM2 WILD-TYPE   99   12
    clus
vv   FREM2 MUTATED FREM2 WILD-TYPE
  M0            10              99
  M1             0              12
D89V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FREM2 MUTATED     10    0
  FREM2 WILD-TYPE  106    6
     clus
vv    FREM2 MUTATED FREM2 WILD-TYPE
  NO              0               6
  YES            10             106

Clustering(90) Variable = CDCP2 MUTATION ANALYSIS
D90V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"CDCP2 WILD-TYPE"   "CDCP2 MUTATED" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE"   "CDCP2 MUTATED" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE"   "CDCP2 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"CDCP2 WILD-TYPE"   "CDCP2 MUTATED" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE"   "CDCP2 MUTATED" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE"   "CDCP2 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"CDCP2 WILD-TYPE"   "CDCP2 MUTATED" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE"   "CDCP2 MUTATED" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE"   "CDCP2 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" "CDCP2 WILD-TYPE" 
[1] "hr="     "9200000"
D90V2, continuous
D90V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDCP2 MUTATED      3    2
  CDCP2 WILD-TYPE   50   66
        clus
vv       CDCP2 MUTATED CDCP2 WILD-TYPE
  COLON              3              50
  RECTUM             2              66
D90V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDCP2 MUTATED      4    1
  CDCP2 WILD-TYPE   66   51
        clus
vv       CDCP2 MUTATED CDCP2 WILD-TYPE
  FEMALE             1              51
  MALE               4              66
D90V5, multiclass
                                clus
vv                               CDCP2 MUTATED CDCP2 WILD-TYPE
  COLON ADENOCARCINOMA                       3              42
  COLON MUCINOUS ADENOCARCINOMA              0               7
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D90V6, multiclass
    clus
vv   CDCP2 MUTATED CDCP2 WILD-TYPE
  T1             0               6
  T2             2              23
  T3             3              81
  T4             0               6
D90V7, multiclass
    clus
vv   CDCP2 MUTATED CDCP2 WILD-TYPE
  N0             4              74
  N1             1              21
  N2             0              22
D90V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDCP2 MUTATED      5    0
  CDCP2 WILD-TYPE  104   12
    clus
vv   CDCP2 MUTATED CDCP2 WILD-TYPE
  M0             5             104
  M1             0              12
D90V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDCP2 MUTATED      5    0
  CDCP2 WILD-TYPE  111    6
     clus
vv    CDCP2 MUTATED CDCP2 WILD-TYPE
  NO              0               6
  YES             5             111

Clustering(91) Variable = RNF219 MUTATION ANALYSIS
D91V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"RNF219 WILD-TYPE"   "RNF219 MUTATED" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE"   "RNF219 MUTATED" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
  "RNF219 MUTATED" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE"   "RNF219 MUTATED" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"RNF219 WILD-TYPE"   "RNF219 MUTATED" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE"   "RNF219 MUTATED" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
  "RNF219 MUTATED" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE"   "RNF219 MUTATED" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"RNF219 WILD-TYPE"   "RNF219 MUTATED" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE"   "RNF219 MUTATED" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
  "RNF219 MUTATED" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE"   "RNF219 MUTATED" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"RNF219 WILD-TYPE" "RNF219 WILD-TYPE" "RNF219 WILD-TYPE" 
[1] "hr="     "9200000"
D91V2, continuous
D91V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  RNF219 MUTATED      1    4
  RNF219 WILD-TYPE   52   64
        clus
vv       RNF219 MUTATED RNF219 WILD-TYPE
  COLON               1               52
  RECTUM              4               64
D91V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  RNF219 MUTATED      2    3
  RNF219 WILD-TYPE   68   49
        clus
vv       RNF219 MUTATED RNF219 WILD-TYPE
  FEMALE              3               49
  MALE                2               68
D91V5, multiclass
                                clus
vv                               RNF219 MUTATED RNF219 WILD-TYPE
  COLON ADENOCARCINOMA                        1               44
  COLON MUCINOUS ADENOCARCINOMA               0                7
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D91V6, multiclass
    clus
vv   RNF219 MUTATED RNF219 WILD-TYPE
  T1              1                5
  T2              2               23
  T3              2               82
  T4              0                6
D91V7, multiclass
    clus
vv   RNF219 MUTATED RNF219 WILD-TYPE
  N0              4               74
  N1              1               21
  N2              0               22
D91V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  RNF219 MUTATED      5    0
  RNF219 WILD-TYPE  104   12
    clus
vv   RNF219 MUTATED RNF219 WILD-TYPE
  M0              5              104
  M1              0               12
D91V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  RNF219 MUTATED      5    0
  RNF219 WILD-TYPE  111    6
     clus
vv    RNF219 MUTATED RNF219 WILD-TYPE
  NO               0                6
  YES              5              111

Clustering(92) Variable = OR5B12 MUTATION ANALYSIS
D92V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE"   "OR5B12 MUTATED" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE"   "OR5B12 MUTATED" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE"   "OR5B12 MUTATED" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE"   "OR5B12 MUTATED" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE"   "OR5B12 MUTATED" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE"   "OR5B12 MUTATED" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE"   "OR5B12 MUTATED" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE"   "OR5B12 MUTATED" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE"   "OR5B12 MUTATED" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" "OR5B12 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D92V2, continuous
D92V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5B12 MUTATED      2    2
  OR5B12 WILD-TYPE   51   66
        clus
vv       OR5B12 MUTATED OR5B12 WILD-TYPE
  COLON               2               51
  RECTUM              2               66
D92V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5B12 MUTATED      2    2
  OR5B12 WILD-TYPE   68   50
        clus
vv       OR5B12 MUTATED OR5B12 WILD-TYPE
  FEMALE              2               50
  MALE                2               68
D92V5, multiclass
                                clus
vv                               OR5B12 MUTATED OR5B12 WILD-TYPE
  COLON ADENOCARCINOMA                        1               44
  COLON MUCINOUS ADENOCARCINOMA               1                6
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D92V6, multiclass
    clus
vv   OR5B12 MUTATED OR5B12 WILD-TYPE
  T1              0                6
  T2              2               23
  T3              1               83
  T4              1                5
D92V7, multiclass
    clus
vv   OR5B12 MUTATED OR5B12 WILD-TYPE
  N0              2               76
  N1              1               21
  N2              1               21
D92V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5B12 MUTATED      4    0
  OR5B12 WILD-TYPE  105   12
    clus
vv   OR5B12 MUTATED OR5B12 WILD-TYPE
  M0              4              105
  M1              0               12
D92V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5B12 MUTATED      4    0
  OR5B12 WILD-TYPE  112    6
     clus
vv    OR5B12 MUTATED OR5B12 WILD-TYPE
  NO               0                6
  YES              4              112

Clustering(93) Variable = FLRT2 MUTATION ANALYSIS
D93V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE"   "FLRT2 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE"   "FLRT2 MUTATED" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE"   "FLRT2 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE"   "FLRT2 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE"   "FLRT2 MUTATED" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE"   "FLRT2 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE"   "FLRT2 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE"   "FLRT2 MUTATED" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE"   "FLRT2 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
[1] "hr="     "7.4e+07"
D93V2, continuous
D93V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FLRT2 MUTATED      5    2
  FLRT2 WILD-TYPE   48   66
        clus
vv       FLRT2 MUTATED FLRT2 WILD-TYPE
  COLON              5              48
  RECTUM             2              66
D93V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FLRT2 MUTATED      4    3
  FLRT2 WILD-TYPE   66   49
        clus
vv       FLRT2 MUTATED FLRT2 WILD-TYPE
  FEMALE             3              49
  MALE               4              66
D93V5, multiclass
                                clus
vv                               FLRT2 MUTATED FLRT2 WILD-TYPE
  COLON ADENOCARCINOMA                       4              41
  COLON MUCINOUS ADENOCARCINOMA              1               6
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D93V6, multiclass
    clus
vv   FLRT2 MUTATED FLRT2 WILD-TYPE
  T1             1               5
  T2             1              24
  T3             4              80
  T4             0               6
D93V7, multiclass
    clus
vv   FLRT2 MUTATED FLRT2 WILD-TYPE
  N0             5              73
  N1             0              22
  N2             2              20
D93V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FLRT2 MUTATED      7    0
  FLRT2 WILD-TYPE  102   12
    clus
vv   FLRT2 MUTATED FLRT2 WILD-TYPE
  M0             7             102
  M1             0              12
D93V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FLRT2 MUTATED      6    1
  FLRT2 WILD-TYPE  110    5
     clus
vv    FLRT2 MUTATED FLRT2 WILD-TYPE
  NO              1               5
  YES             6             110

Clustering(94) Variable = EPHA5 MUTATION ANALYSIS
D94V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE"   "EPHA5 MUTATED" "EPHA5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE"   "EPHA5 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
  "EPHA5 MUTATED" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "EPHA5 MUTATED" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE"   "EPHA5 MUTATED" "EPHA5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE"   "EPHA5 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
  "EPHA5 MUTATED" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "EPHA5 MUTATED" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE"   "EPHA5 MUTATED" "EPHA5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE"   "EPHA5 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
  "EPHA5 MUTATED" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "EPHA5 MUTATED" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
[1] "hr="   "8e+07"
D94V2, continuous
D94V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA5 MUTATED      3    4
  EPHA5 WILD-TYPE   50   64
        clus
vv       EPHA5 MUTATED EPHA5 WILD-TYPE
  COLON              3              50
  RECTUM             4              64
D94V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA5 MUTATED      4    3
  EPHA5 WILD-TYPE   66   49
        clus
vv       EPHA5 MUTATED EPHA5 WILD-TYPE
  FEMALE             3              49
  MALE               4              66
D94V5, multiclass
                                clus
vv                               EPHA5 MUTATED EPHA5 WILD-TYPE
  COLON ADENOCARCINOMA                       2              43
  COLON MUCINOUS ADENOCARCINOMA              1               6
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D94V6, multiclass
    clus
vv   EPHA5 MUTATED EPHA5 WILD-TYPE
  T1             0               6
  T2             3              22
  T3             4              80
  T4             0               6
D94V7, multiclass
    clus
vv   EPHA5 MUTATED EPHA5 WILD-TYPE
  N0             4              74
  N1             1              21
  N2             2              20
D94V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA5 MUTATED      7    0
  EPHA5 WILD-TYPE  102   12
    clus
vv   EPHA5 MUTATED EPHA5 WILD-TYPE
  M0             7             102
  M1             0              12
D94V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA5 MUTATED      7    0
  EPHA5 WILD-TYPE  109    6
     clus
vv    EPHA5 MUTATED EPHA5 WILD-TYPE
  NO              0               6
  YES             7             109

Clustering(95) Variable = ODZ1 MUTATION ANALYSIS
D95V1, survival
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"ODZ1 WILD-TYPE"   "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" "ODZ1 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" "ODZ1 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"ODZ1 WILD-TYPE"   "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" "ODZ1 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" "ODZ1 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-AA-3518 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-A00A 
"ODZ1 WILD-TYPE"   "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00Q     TCGA-AA-A00R 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" "ODZ1 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A01F 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01Q     TCGA-AF-2689     TCGA-AF-2691 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" "ODZ1 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
[1] "hr="     "7.7e+07"
D95V2, continuous
D95V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ODZ1 MUTATED      5    5
  ODZ1 WILD-TYPE   48   63
        clus
vv       ODZ1 MUTATED ODZ1 WILD-TYPE
  COLON             5             48
  RECTUM            5             63
D95V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ODZ1 MUTATED      1    9
  ODZ1 WILD-TYPE   69   43
        clus
vv       ODZ1 MUTATED ODZ1 WILD-TYPE
  FEMALE            9             43
  MALE              1             69
D95V5, multiclass
                                clus
vv                               ODZ1 MUTATED ODZ1 WILD-TYPE
  COLON ADENOCARCINOMA                      3             42
  COLON MUCINOUS ADENOCARCINOMA             2              5
  RECTAL ADENOCARCINOMA                     3             54
  RECTAL MUCINOUS ADENOCARCINOMA            1              7
D95V6, multiclass
    clus
vv   ODZ1 MUTATED ODZ1 WILD-TYPE
  T1            0              6
  T2            2             23
  T3            7             77
  T4            1              5
D95V7, multiclass
    clus
vv   ODZ1 MUTATED ODZ1 WILD-TYPE
  N0            4             74
  N1            3             19
  N2            3             19
D95V8, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ODZ1 MUTATED      8    2
  ODZ1 WILD-TYPE  101   10
    clus
vv   ODZ1 MUTATED ODZ1 WILD-TYPE
  M0            8            101
  M1            2             10
D95V9, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ODZ1 MUTATED     10    0
  ODZ1 WILD-TYPE  106    6
     clus
vv    ODZ1 MUTATED ODZ1 WILD-TYPE
  NO             0              6
  YES           10            106

Clustering(96) Variable = SLC45A2 MUTATION ANALYSIS
D96V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-AA-3518 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-A00A 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
  "SLC45A2 MUTATED" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00Q        TCGA-AA-A00R 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A01F 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01Q        TCGA-AF-2689        TCGA-AF-2691 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3581 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587        TCGA-AG-3599 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3887 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3999 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-A002 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE"   "SLC45A2 MUTATED" 
       TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H        TCGA-AG-A00Y 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015        TCGA-AG-A016 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02N 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-AA-3518 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-A00A 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
  "SLC45A2 MUTATED" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00Q        TCGA-AA-A00R 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A01F 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01Q        TCGA-AF-2689        TCGA-AF-2691 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3581 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587        TCGA-AG-3599 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3887 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3999 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-A002 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE"   "SLC45A2 MUTATED" 
       TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H        TCGA-AG-A00Y 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015        TCGA-AG-A016 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02N 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-AA-3518 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-A00A 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
  "SLC45A2 MUTATED" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00Q        TCGA-AA-A00R 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A01F 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01Q        TCGA-AF-2689        TCGA-AF-2691 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3581 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587        TCGA-AG-3599 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3887 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3999 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-A002 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE"   "SLC45A2 MUTATED" 
       TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H        TCGA-AG-A00Y 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015        TCGA-AG-A016 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02N 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
[1] "Remove cluster labels:" "SLC45A2 MUTATED"       
clus
  SLC45A2 MUTATED SLC45A2 WILD-TYPE 
                2                65 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-AA-3518 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-A00A 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A01F        TCGA-AA-A01G 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AF-2689        TCGA-AF-2691        TCGA-AF-2692 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3581        TCGA-AG-3582 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AG-3583        TCGA-AG-3587        TCGA-AG-3599        TCGA-AG-3726 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3887        TCGA-AG-3892 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3999        TCGA-AG-4001 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-A008        TCGA-AG-A00C 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AG-A01Y        TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032 
"SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" "SLC45A2 WILD-TYPE" 
       TCGA-AG-A036 
"SLC45A2 WILD-TYPE" 
D96V2, continuous
D96V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC45A2 MUTATED      2    2
  SLC45A2 WILD-TYPE   51   66
        clus
vv       SLC45A2 MUTATED SLC45A2 WILD-TYPE
  COLON                2                51
  RECTUM               2                66
D96V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC45A2 MUTATED      4    0
  SLC45A2 WILD-TYPE   66   52
        clus
vv       SLC45A2 MUTATED SLC45A2 WILD-TYPE
  FEMALE               0                52
  MALE                 4                66
D96V5, multiclass
                                clus
vv                               SLC45A2 MUTATED SLC45A2 WILD-TYPE
  COLON ADENOCARCINOMA                         2                43
  COLON MUCINOUS ADENOCARCINOMA                0                 7
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D96V6, multiclass
    clus
vv   SLC45A2 MUTATED SLC45A2 WILD-TYPE
  T1               0                 6
  T2               3                22
  T3               1                83
  T4               0                 6
D96V7, multiclass
    clus
vv   SLC45A2 MUTATED SLC45A2 WILD-TYPE
  N0               3                75
  N1               0                22
  N2               1                21
D96V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC45A2 MUTATED      3    1
  SLC45A2 WILD-TYPE  106   11
    clus
vv   SLC45A2 MUTATED SLC45A2 WILD-TYPE
  M0               3               106
  M1               1                11
D96V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC45A2 MUTATED      4    0
  SLC45A2 WILD-TYPE  112    6
     clus
vv    SLC45A2 MUTATED SLC45A2 WILD-TYPE
  NO                0                 6
  YES               4               112

Clustering(97) Variable = C14ORF106 MUTATION ANALYSIS
D97V1, survival
         TCGA-A6-2670          TCGA-A6-2672          TCGA-A6-2674 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-A6-2676          TCGA-A6-2677          TCGA-A6-2678 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-A6-2683          TCGA-AA-3518          TCGA-AA-3526 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3562          TCGA-AA-A00A 
  "C14ORF106 MUTATED" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AA-A00D          TCGA-AA-A00E          TCGA-AA-A00F 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AA-A00J          TCGA-AA-A00K          TCGA-AA-A00L 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AA-A00Q          TCGA-AA-A00R          TCGA-AA-A00U 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AA-A00W          TCGA-AA-A00Z          TCGA-AA-A01F 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AA-A01G          TCGA-AA-A01Q          TCGA-AF-2689 
"C14ORF106 WILD-TYPE"   "C14ORF106 MUTATED" "C14ORF106 WILD-TYPE" 
         TCGA-AF-2691          TCGA-AF-2692          TCGA-AF-3400 
"C14ORF106 WILD-TYPE"   "C14ORF106 MUTATED" "C14ORF106 WILD-TYPE" 
         TCGA-AF-3913          TCGA-AG-3581          TCGA-AG-3582 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AG-3583          TCGA-AG-3587          TCGA-AG-3599 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AG-3726          TCGA-AG-3727          TCGA-AG-3878 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AG-3887          TCGA-AG-3892          TCGA-AG-3893 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AG-3894          TCGA-AG-3999          TCGA-AG-4001 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AG-4007          TCGA-AG-4008          TCGA-AG-A002 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE"   "C14ORF106 MUTATED" 
         TCGA-AG-A008          TCGA-AG-A00C          TCGA-AG-A00H 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AG-A00Y          TCGA-AG-A011          TCGA-AG-A014 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AG-A015          TCGA-AG-A016          TCGA-AG-A01L 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AG-A01W          TCGA-AG-A01Y          TCGA-AG-A020 
  "C14ORF106 MUTATED" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AG-A025          TCGA-AG-A026          TCGA-AG-A02G 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AG-A02N          TCGA-AG-A02X          TCGA-AG-A032 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AG-A036 
"C14ORF106 WILD-TYPE" 
         TCGA-A6-2670          TCGA-A6-2672          TCGA-A6-2674 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-A6-2676          TCGA-A6-2677          TCGA-A6-2678 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-A6-2683          TCGA-AA-3518          TCGA-AA-3526 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3562          TCGA-AA-A00A 
  "C14ORF106 MUTATED" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AA-A00D          TCGA-AA-A00E          TCGA-AA-A00F 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AA-A00J          TCGA-AA-A00K          TCGA-AA-A00L 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AA-A00Q          TCGA-AA-A00R          TCGA-AA-A00U 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AA-A00W          TCGA-AA-A00Z          TCGA-AA-A01F 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AA-A01G          TCGA-AA-A01Q          TCGA-AF-2689 
"C14ORF106 WILD-TYPE"   "C14ORF106 MUTATED" "C14ORF106 WILD-TYPE" 
         TCGA-AF-2691          TCGA-AF-2692          TCGA-AF-3400 
"C14ORF106 WILD-TYPE"   "C14ORF106 MUTATED" "C14ORF106 WILD-TYPE" 
         TCGA-AF-3913          TCGA-AG-3581          TCGA-AG-3582 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AG-3583          TCGA-AG-3587          TCGA-AG-3599 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AG-3726          TCGA-AG-3727          TCGA-AG-3878 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AG-3887          TCGA-AG-3892          TCGA-AG-3893 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AG-3894          TCGA-AG-3999          TCGA-AG-4001 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AG-4007          TCGA-AG-4008          TCGA-AG-A002 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE"   "C14ORF106 MUTATED" 
         TCGA-AG-A008          TCGA-AG-A00C          TCGA-AG-A00H 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AG-A00Y          TCGA-AG-A011          TCGA-AG-A014 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AG-A015          TCGA-AG-A016          TCGA-AG-A01L 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AG-A01W          TCGA-AG-A01Y          TCGA-AG-A020 
  "C14ORF106 MUTATED" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AG-A025          TCGA-AG-A026          TCGA-AG-A02G 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AG-A02N          TCGA-AG-A02X          TCGA-AG-A032 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AG-A036 
"C14ORF106 WILD-TYPE" 
         TCGA-A6-2670          TCGA-A6-2672          TCGA-A6-2674 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-A6-2676          TCGA-A6-2677          TCGA-A6-2678 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-A6-2683          TCGA-AA-3518          TCGA-AA-3526 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3562          TCGA-AA-A00A 
  "C14ORF106 MUTATED" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AA-A00D          TCGA-AA-A00E          TCGA-AA-A00F 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AA-A00J          TCGA-AA-A00K          TCGA-AA-A00L 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AA-A00Q          TCGA-AA-A00R          TCGA-AA-A00U 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AA-A00W          TCGA-AA-A00Z          TCGA-AA-A01F 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AA-A01G          TCGA-AA-A01Q          TCGA-AF-2689 
"C14ORF106 WILD-TYPE"   "C14ORF106 MUTATED" "C14ORF106 WILD-TYPE" 
         TCGA-AF-2691          TCGA-AF-2692          TCGA-AF-3400 
"C14ORF106 WILD-TYPE"   "C14ORF106 MUTATED" "C14ORF106 WILD-TYPE" 
         TCGA-AF-3913          TCGA-AG-3581          TCGA-AG-3582 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AG-3583          TCGA-AG-3587          TCGA-AG-3599 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AG-3726          TCGA-AG-3727          TCGA-AG-3878 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AG-3887          TCGA-AG-3892          TCGA-AG-3893 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AG-3894          TCGA-AG-3999          TCGA-AG-4001 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AG-4007          TCGA-AG-4008          TCGA-AG-A002 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE"   "C14ORF106 MUTATED" 
         TCGA-AG-A008          TCGA-AG-A00C          TCGA-AG-A00H 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AG-A00Y          TCGA-AG-A011          TCGA-AG-A014 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AG-A015          TCGA-AG-A016          TCGA-AG-A01L 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AG-A01W          TCGA-AG-A01Y          TCGA-AG-A020 
  "C14ORF106 MUTATED" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AG-A025          TCGA-AG-A026          TCGA-AG-A02G 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AG-A02N          TCGA-AG-A02X          TCGA-AG-A032 
"C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" "C14ORF106 WILD-TYPE" 
         TCGA-AG-A036 
"C14ORF106 WILD-TYPE" 
[1] "hr="     "7.9e+07"
D97V2, continuous
D97V3, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  C14ORF106 MUTATED      3    2
  C14ORF106 WILD-TYPE   50   66
        clus
vv       C14ORF106 MUTATED C14ORF106 WILD-TYPE
  COLON                  3                  50
  RECTUM                 2                  66
D97V4, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  C14ORF106 MUTATED      2    4
  C14ORF106 WILD-TYPE   68   48
        clus
vv       C14ORF106 MUTATED C14ORF106 WILD-TYPE
  FEMALE                 4                  48
  MALE                   2                  68
D97V5, multiclass
                                clus
vv                               C14ORF106 MUTATED C14ORF106 WILD-TYPE
  COLON ADENOCARCINOMA                           2                  43
  COLON MUCINOUS ADENOCARCINOMA                  1                   6
  RECTAL ADENOCARCINOMA                          2                  55
  RECTAL MUCINOUS ADENOCARCINOMA                 0                   8
D97V6, multiclass
    clus
vv   C14ORF106 MUTATED C14ORF106 WILD-TYPE
  T1                 0                   6
  T2                 1                  24
  T3                 5                  79
  T4                 0                   6
D97V7, multiclass
    clus
vv   C14ORF106 MUTATED C14ORF106 WILD-TYPE
  N0                 5                  73
  N1                 0                  22
  N2                 1                  21
D97V8, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  C14ORF106 MUTATED      6    0
  C14ORF106 WILD-TYPE  103   12
    clus
vv   C14ORF106 MUTATED C14ORF106 WILD-TYPE
  M0                 6                 103
  M1                 0                  12
D97V9, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  C14ORF106 MUTATED      6    0
  C14ORF106 WILD-TYPE  110    6
     clus
vv    C14ORF106 MUTATED C14ORF106 WILD-TYPE
  NO                  0                   6
  YES                 6                 110

Clustering(98) Variable = KCNT2 MUTATION ANALYSIS
D98V1, survival
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-AA-3518 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-A00A 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00Q      TCGA-AA-A00R 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A01F 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01Q      TCGA-AF-2689      TCGA-AF-2691 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
  "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
[1] "hr="     "7.9e+07"
D98V2, continuous
D98V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNT2 MUTATED      2    5
  KCNT2 WILD-TYPE   51   63
        clus
vv       KCNT2 MUTATED KCNT2 WILD-TYPE
  COLON              2              51
  RECTUM             5              63
D98V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNT2 MUTATED      1    6
  KCNT2 WILD-TYPE   69   46
        clus
vv       KCNT2 MUTATED KCNT2 WILD-TYPE
  FEMALE             6              46
  MALE               1              69
D98V5, multiclass
                                clus
vv                               KCNT2 MUTATED KCNT2 WILD-TYPE
  COLON ADENOCARCINOMA                       1              44
  COLON MUCINOUS ADENOCARCINOMA              1               6
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D98V6, multiclass
    clus
vv   KCNT2 MUTATED KCNT2 WILD-TYPE
  T1             1               5
  T2             2              23
  T3             4              80
  T4             0               6
D98V7, multiclass
    clus
vv   KCNT2 MUTATED KCNT2 WILD-TYPE
  N0             4              74
  N1             1              21
  N2             2              20
D98V8, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNT2 MUTATED      7    0
  KCNT2 WILD-TYPE  102   12
    clus
vv   KCNT2 MUTATED KCNT2 WILD-TYPE
  M0             7             102
  M1             0              12
D98V9, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNT2 MUTATED      7    0
  KCNT2 WILD-TYPE  109    6
     clus
vv    KCNT2 MUTATED KCNT2 WILD-TYPE
  NO              0               6
  YES             7             109

Clustering(99) Variable = MAGEC2 MUTATION ANALYSIS
D99V1, survival
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3518 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" 
      TCGA-AA-3526       TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
[1] "Remove cluster labels:" "MAGEC2 MUTATED"        
clus
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
               2               65 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-AA-3526 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-A00A       TCGA-AA-A00D 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A01F       TCGA-AA-A01G 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AF-2689       TCGA-AF-2691       TCGA-AF-2692 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581       TCGA-AG-3582 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599       TCGA-AG-3726 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887       TCGA-AG-3892 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999       TCGA-AG-4001 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A008       TCGA-AG-A00C 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A02G       TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A036 
"MAGEC2 WILD-TYPE" 
D99V2, continuous
D99V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEC2 MUTATED      2    3
  MAGEC2 WILD-TYPE   51   65
        clus
vv       MAGEC2 MUTATED MAGEC2 WILD-TYPE
  COLON               2               51
  RECTUM              3               65
D99V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEC2 MUTATED      1    4
  MAGEC2 WILD-TYPE   69   48
        clus
vv       MAGEC2 MUTATED MAGEC2 WILD-TYPE
  FEMALE              4               48
  MALE                1               69
D99V5, multiclass
                                clus
vv                               MAGEC2 MUTATED MAGEC2 WILD-TYPE
  COLON ADENOCARCINOMA                        1               44
  COLON MUCINOUS ADENOCARCINOMA               1                6
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D99V6, multiclass
    clus
vv   MAGEC2 MUTATED MAGEC2 WILD-TYPE
  T1              0                6
  T2              1               24
  T3              4               80
  T4              0                6
D99V7, multiclass
    clus
vv   MAGEC2 MUTATED MAGEC2 WILD-TYPE
  N0              4               74
  N1              0               22
  N2              1               21
D99V8, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEC2 MUTATED      5    0
  MAGEC2 WILD-TYPE  104   12
    clus
vv   MAGEC2 MUTATED MAGEC2 WILD-TYPE
  M0              5              104
  M1              0               12
D99V9, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEC2 MUTATED      5    0
  MAGEC2 WILD-TYPE  111    6
     clus
vv    MAGEC2 MUTATED MAGEC2 WILD-TYPE
  NO               0                6
  YES              5              111

Clustering(100) Variable = CWF19L2 MUTATION ANALYSIS
D100V1, survival
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-AA-3518 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-A00A 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE"   "CWF19L2 MUTATED" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00Q        TCGA-AA-A00R 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A01F 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01Q        TCGA-AF-2689        TCGA-AF-2691 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3581 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587        TCGA-AG-3599 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3887 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3999 
  "CWF19L2 MUTATED" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-A002 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE"   "CWF19L2 MUTATED" 
       TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H        TCGA-AG-A00Y 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015        TCGA-AG-A016 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02N 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-AA-3518 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-A00A 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE"   "CWF19L2 MUTATED" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00Q        TCGA-AA-A00R 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A01F 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01Q        TCGA-AF-2689        TCGA-AF-2691 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3581 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587        TCGA-AG-3599 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3887 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3999 
  "CWF19L2 MUTATED" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-A002 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE"   "CWF19L2 MUTATED" 
       TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H        TCGA-AG-A00Y 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015        TCGA-AG-A016 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02N 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-AA-3518 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-A00A 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE"   "CWF19L2 MUTATED" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00Q        TCGA-AA-A00R 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A01F 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01Q        TCGA-AF-2689        TCGA-AF-2691 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3581 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587        TCGA-AG-3599 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3887 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3999 
  "CWF19L2 MUTATED" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-A002 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE"   "CWF19L2 MUTATED" 
       TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H        TCGA-AG-A00Y 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015        TCGA-AG-A016 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02N 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
       TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" "CWF19L2 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D100V2, continuous
D100V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CWF19L2 MUTATED      2    3
  CWF19L2 WILD-TYPE   51   65
        clus
vv       CWF19L2 MUTATED CWF19L2 WILD-TYPE
  COLON                2                51
  RECTUM               3                65
D100V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CWF19L2 MUTATED      4    1
  CWF19L2 WILD-TYPE   66   51
        clus
vv       CWF19L2 MUTATED CWF19L2 WILD-TYPE
  FEMALE               1                51
  MALE                 4                66
D100V5, multiclass
                                clus
vv                               CWF19L2 MUTATED CWF19L2 WILD-TYPE
  COLON ADENOCARCINOMA                         0                45
  COLON MUCINOUS ADENOCARCINOMA                2                 5
  RECTAL ADENOCARCINOMA                        3                54
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D100V6, multiclass
    clus
vv   CWF19L2 MUTATED CWF19L2 WILD-TYPE
  T1               1                 5
  T2               3                22
  T3               0                84
  T4               1                 5
D100V7, multiclass
    clus
vv   CWF19L2 MUTATED CWF19L2 WILD-TYPE
  N0               4                74
  N1               1                21
  N2               0                22
D100V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CWF19L2 MUTATED      5    0
  CWF19L2 WILD-TYPE  104   12
    clus
vv   CWF19L2 MUTATED CWF19L2 WILD-TYPE
  M0               5               104
  M1               0                12
D100V9, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CWF19L2 MUTATED      5    0
  CWF19L2 WILD-TYPE  111    6
     clus
vv    CWF19L2 MUTATED CWF19L2 WILD-TYPE
  NO                0                 6
  YES               5               111
                     V1.D                        V2                        V3 
          "Time to Death"                     "AGE" "PRIMARY.SITE.OF.DISEASE" 
                       V4                        V5                        V6 
                 "GENDER"       "HISTOLOGICAL.TYPE"             "PATHOLOGY.T" 
                       V7                        V8                        V9 
            "PATHOLOGY.N"     "PATHOLOGICSPREAD(M)"     "NEOADJUVANT.THERAPY" 
> q(save="no")
