calling:  bsub -r -R select[tmp>1000 && scratch>1] -q cga -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140431/iteration1 -E cd "/xchip/tcga" && cd "/xchip/cga" -e prepare.err -oo prepare.out -K -R rusage[mem=4] -P test python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Prepare.py /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/ 1 0.001 /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140430/clusterFiles.tar /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140430/config.txt /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140430/configEM.txt /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140430/jobs.sh /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140430/templateEM.sh /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140430/params0.txt
Started submitting scatter jobs at Wed Aug  1 18:03:27 2012
calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140431/iteration1/scatter.0000000001 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140431/iteration1/scatter.0000000001/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_140431   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_36_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_36_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_49_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_49_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_61_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_61_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_41_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_41_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_7_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_7_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_79_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_79_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_124_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_124_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_14_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_14_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_100_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_100_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_93_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_93_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_86_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_86_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_46_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_46_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_123_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_123_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_80_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_80_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_15_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_15_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_39_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_39_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_89_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_89_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_127_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_127_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_13_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_13_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_75_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_75_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b0_70_learned_parameters.fa -s 0,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b1_70_learned_parameters.fa -s 1,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b2_70_learned_parameters.fa -s 2,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b3_70_learned_parameters.fa -s 3,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b4_70_learned_parameters.fa -s 4,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b5_70_learned_parameters.fa -s 5,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b6_70_learned_parameters.fa -s 6,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b7_70_learned_parameters.fa -s 7,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b8_70_learned_parameters.fa -s 8,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b9_70_learned_parameters.fa -s 9,70

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140431/iteration1/scatter.0000000002 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140431/iteration1/scatter.0000000002/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_140431   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b10_70_learned_parameters.fa -s 10,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b11_70_learned_parameters.fa -s 11,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b12_70_learned_parameters.fa -s 12,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b13_70_learned_parameters.fa -s 13,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b14_70_learned_parameters.fa -s 14,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b15_70_learned_parameters.fa -s 15,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b16_70_learned_parameters.fa -s 16,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b17_70_learned_parameters.fa -s 17,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b18_70_learned_parameters.fa -s 18,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b19_70_learned_parameters.fa -s 19,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b20_70_learned_parameters.fa -s 20,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b21_70_learned_parameters.fa -s 21,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b22_70_learned_parameters.fa -s 22,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b23_70_learned_parameters.fa -s 23,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b24_70_learned_parameters.fa -s 24,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b25_70_learned_parameters.fa -s 25,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b26_70_learned_parameters.fa -s 26,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b27_70_learned_parameters.fa -s 27,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b28_70_learned_parameters.fa -s 28,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b29_70_learned_parameters.fa -s 29,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b30_70_learned_parameters.fa -s 30,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b31_70_learned_parameters.fa -s 31,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b32_70_learned_parameters.fa -s 32,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b33_70_learned_parameters.fa -s 33,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b34_70_learned_parameters.fa -s 34,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b35_70_learned_parameters.fa -s 35,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b36_70_learned_parameters.fa -s 36,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b37_70_learned_parameters.fa -s 37,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b38_70_learned_parameters.fa -s 38,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b39_70_learned_parameters.fa -s 39,70

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140431/iteration1/scatter.0000000003 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140431/iteration1/scatter.0000000003/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_140431   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b40_70_learned_parameters.fa -s 40,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b41_70_learned_parameters.fa -s 41,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b42_70_learned_parameters.fa -s 42,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b43_70_learned_parameters.fa -s 43,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b44_70_learned_parameters.fa -s 44,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b45_70_learned_parameters.fa -s 45,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b46_70_learned_parameters.fa -s 46,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b47_70_learned_parameters.fa -s 47,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b48_70_learned_parameters.fa -s 48,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b49_70_learned_parameters.fa -s 49,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b50_70_learned_parameters.fa -s 50,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b51_70_learned_parameters.fa -s 51,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b52_70_learned_parameters.fa -s 52,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b53_70_learned_parameters.fa -s 53,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b54_70_learned_parameters.fa -s 54,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b55_70_learned_parameters.fa -s 55,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b56_70_learned_parameters.fa -s 56,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b57_70_learned_parameters.fa -s 57,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b58_70_learned_parameters.fa -s 58,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b59_70_learned_parameters.fa -s 59,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b60_70_learned_parameters.fa -s 60,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b61_70_learned_parameters.fa -s 61,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b62_70_learned_parameters.fa -s 62,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b63_70_learned_parameters.fa -s 63,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b64_70_learned_parameters.fa -s 64,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b65_70_learned_parameters.fa -s 65,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b66_70_learned_parameters.fa -s 66,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b67_70_learned_parameters.fa -s 67,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b68_70_learned_parameters.fa -s 68,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b69_70_learned_parameters.fa -s 69,70

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140431/iteration1/scatter.0000000004 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140431/iteration1/scatter.0000000004/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_140431   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_82_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_82_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_119_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_119_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b0_15_learned_parameters.fa -s 0,15 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b1_15_learned_parameters.fa -s 1,15 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b2_15_learned_parameters.fa -s 2,15 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b3_15_learned_parameters.fa -s 3,15 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b4_15_learned_parameters.fa -s 4,15 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b5_15_learned_parameters.fa -s 5,15 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b6_15_learned_parameters.fa -s 6,15 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b7_15_learned_parameters.fa -s 7,15 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b8_15_learned_parameters.fa -s 8,15 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b9_15_learned_parameters.fa -s 9,15 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b10_15_learned_parameters.fa -s 10,15 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b11_15_learned_parameters.fa -s 11,15 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b12_15_learned_parameters.fa -s 12,15 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b13_15_learned_parameters.fa -s 13,15 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b14_15_learned_parameters.fa -s 14,15 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_52_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_52_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_65_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_65_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_130_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_130_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_85_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_85_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_51_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_51_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_43_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_43_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_110_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_110_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_50_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_50_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_50_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_50_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_106_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_106_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_54_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_54_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_31_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_31_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_74_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_74_learned_parameters.fa

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140431/iteration1/scatter.0000000005 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140431/iteration1/scatter.0000000005/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_140431   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_72_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_72_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_72_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_72_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_18_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_18_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_37_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_37_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_33_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_33_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_122_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_122_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_26_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_26_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_64_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_64_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_66_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_66_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_47_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_47_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_25_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_25_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_73_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_73_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_67_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_67_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_76_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_76_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_11_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_11_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_71_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_71_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_63_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_63_b0_5_learned_parameters.fa -s 0,5 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_63_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_63_b1_5_learned_parameters.fa -s 1,5 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_63_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_63_b2_5_learned_parameters.fa -s 2,5 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_63_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_63_b3_5_learned_parameters.fa -s 3,5 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_63_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_63_b4_5_learned_parameters.fa -s 4,5 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_114_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_114_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_53_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_53_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_38_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_38_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b0_75_learned_parameters.fa -s 0,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b1_75_learned_parameters.fa -s 1,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b2_75_learned_parameters.fa -s 2,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b3_75_learned_parameters.fa -s 3,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b4_75_learned_parameters.fa -s 4,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b5_75_learned_parameters.fa -s 5,75

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140431/iteration1/scatter.0000000006 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140431/iteration1/scatter.0000000006/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_140431   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b6_75_learned_parameters.fa -s 6,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b7_75_learned_parameters.fa -s 7,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b8_75_learned_parameters.fa -s 8,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b9_75_learned_parameters.fa -s 9,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b10_75_learned_parameters.fa -s 10,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b11_75_learned_parameters.fa -s 11,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b12_75_learned_parameters.fa -s 12,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b13_75_learned_parameters.fa -s 13,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b14_75_learned_parameters.fa -s 14,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b15_75_learned_parameters.fa -s 15,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b16_75_learned_parameters.fa -s 16,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b17_75_learned_parameters.fa -s 17,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b18_75_learned_parameters.fa -s 18,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b19_75_learned_parameters.fa -s 19,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b20_75_learned_parameters.fa -s 20,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b21_75_learned_parameters.fa -s 21,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b22_75_learned_parameters.fa -s 22,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b23_75_learned_parameters.fa -s 23,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b24_75_learned_parameters.fa -s 24,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b25_75_learned_parameters.fa -s 25,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b26_75_learned_parameters.fa -s 26,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b27_75_learned_parameters.fa -s 27,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b28_75_learned_parameters.fa -s 28,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b29_75_learned_parameters.fa -s 29,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b30_75_learned_parameters.fa -s 30,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b31_75_learned_parameters.fa -s 31,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b32_75_learned_parameters.fa -s 32,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b33_75_learned_parameters.fa -s 33,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b34_75_learned_parameters.fa -s 34,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b35_75_learned_parameters.fa -s 35,75

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140431/iteration1/scatter.0000000007 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140431/iteration1/scatter.0000000007/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_140431   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b36_75_learned_parameters.fa -s 36,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b37_75_learned_parameters.fa -s 37,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b38_75_learned_parameters.fa -s 38,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b39_75_learned_parameters.fa -s 39,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b40_75_learned_parameters.fa -s 40,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b41_75_learned_parameters.fa -s 41,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b42_75_learned_parameters.fa -s 42,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b43_75_learned_parameters.fa -s 43,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b44_75_learned_parameters.fa -s 44,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b45_75_learned_parameters.fa -s 45,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b46_75_learned_parameters.fa -s 46,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b47_75_learned_parameters.fa -s 47,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b48_75_learned_parameters.fa -s 48,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b49_75_learned_parameters.fa -s 49,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b50_75_learned_parameters.fa -s 50,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b51_75_learned_parameters.fa -s 51,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b52_75_learned_parameters.fa -s 52,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b53_75_learned_parameters.fa -s 53,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b54_75_learned_parameters.fa -s 54,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b55_75_learned_parameters.fa -s 55,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b56_75_learned_parameters.fa -s 56,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b57_75_learned_parameters.fa -s 57,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b58_75_learned_parameters.fa -s 58,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b59_75_learned_parameters.fa -s 59,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b60_75_learned_parameters.fa -s 60,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b61_75_learned_parameters.fa -s 61,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b62_75_learned_parameters.fa -s 62,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b63_75_learned_parameters.fa -s 63,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b64_75_learned_parameters.fa -s 64,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b65_75_learned_parameters.fa -s 65,75

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140431/iteration1/scatter.0000000008 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140431/iteration1/scatter.0000000008/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_140431   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b66_75_learned_parameters.fa -s 66,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b67_75_learned_parameters.fa -s 67,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b68_75_learned_parameters.fa -s 68,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b69_75_learned_parameters.fa -s 69,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b70_75_learned_parameters.fa -s 70,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b71_75_learned_parameters.fa -s 71,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b72_75_learned_parameters.fa -s 72,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b73_75_learned_parameters.fa -s 73,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b74_75_learned_parameters.fa -s 74,75 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_134_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_134_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_94_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_94_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_44_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_44_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_111_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_111_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_115_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_115_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_12_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_12_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b0_178_learned_parameters.fa -s 0,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b1_178_learned_parameters.fa -s 1,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b2_178_learned_parameters.fa -s 2,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b3_178_learned_parameters.fa -s 3,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b4_178_learned_parameters.fa -s 4,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b5_178_learned_parameters.fa -s 5,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b6_178_learned_parameters.fa -s 6,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b7_178_learned_parameters.fa -s 7,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b8_178_learned_parameters.fa -s 8,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b9_178_learned_parameters.fa -s 9,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b10_178_learned_parameters.fa -s 10,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b11_178_learned_parameters.fa -s 11,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b12_178_learned_parameters.fa -s 12,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b13_178_learned_parameters.fa -s 13,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b14_178_learned_parameters.fa -s 14,178

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140431/iteration1/scatter.0000000009 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140431/iteration1/scatter.0000000009/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_140431   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b15_178_learned_parameters.fa -s 15,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b16_178_learned_parameters.fa -s 16,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b17_178_learned_parameters.fa -s 17,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b18_178_learned_parameters.fa -s 18,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b19_178_learned_parameters.fa -s 19,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b20_178_learned_parameters.fa -s 20,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b21_178_learned_parameters.fa -s 21,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b22_178_learned_parameters.fa -s 22,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b23_178_learned_parameters.fa -s 23,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b24_178_learned_parameters.fa -s 24,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b25_178_learned_parameters.fa -s 25,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b26_178_learned_parameters.fa -s 26,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b27_178_learned_parameters.fa -s 27,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b28_178_learned_parameters.fa -s 28,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b29_178_learned_parameters.fa -s 29,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b30_178_learned_parameters.fa -s 30,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b31_178_learned_parameters.fa -s 31,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b32_178_learned_parameters.fa -s 32,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b33_178_learned_parameters.fa -s 33,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b34_178_learned_parameters.fa -s 34,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b35_178_learned_parameters.fa -s 35,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b36_178_learned_parameters.fa -s 36,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b37_178_learned_parameters.fa -s 37,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b38_178_learned_parameters.fa -s 38,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b39_178_learned_parameters.fa -s 39,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b40_178_learned_parameters.fa -s 40,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b41_178_learned_parameters.fa -s 41,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b42_178_learned_parameters.fa -s 42,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b43_178_learned_parameters.fa -s 43,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b44_178_learned_parameters.fa -s 44,178

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140431/iteration1/scatter.0000000010 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140431/iteration1/scatter.0000000010/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_140431   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b45_178_learned_parameters.fa -s 45,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b46_178_learned_parameters.fa -s 46,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b47_178_learned_parameters.fa -s 47,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b48_178_learned_parameters.fa -s 48,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b49_178_learned_parameters.fa -s 49,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b50_178_learned_parameters.fa -s 50,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b51_178_learned_parameters.fa -s 51,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b52_178_learned_parameters.fa -s 52,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b53_178_learned_parameters.fa -s 53,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b54_178_learned_parameters.fa -s 54,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b55_178_learned_parameters.fa -s 55,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b56_178_learned_parameters.fa -s 56,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b57_178_learned_parameters.fa -s 57,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b58_178_learned_parameters.fa -s 58,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b59_178_learned_parameters.fa -s 59,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b60_178_learned_parameters.fa -s 60,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b61_178_learned_parameters.fa -s 61,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b62_178_learned_parameters.fa -s 62,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b63_178_learned_parameters.fa -s 63,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b64_178_learned_parameters.fa -s 64,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b65_178_learned_parameters.fa -s 65,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b66_178_learned_parameters.fa -s 66,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b67_178_learned_parameters.fa -s 67,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b68_178_learned_parameters.fa -s 68,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b69_178_learned_parameters.fa -s 69,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b70_178_learned_parameters.fa -s 70,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b71_178_learned_parameters.fa -s 71,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b72_178_learned_parameters.fa -s 72,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b73_178_learned_parameters.fa -s 73,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b74_178_learned_parameters.fa -s 74,178

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140431/iteration1/scatter.0000000011 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140431/iteration1/scatter.0000000011/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_140431   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b75_178_learned_parameters.fa -s 75,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b76_178_learned_parameters.fa -s 76,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b77_178_learned_parameters.fa -s 77,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b78_178_learned_parameters.fa -s 78,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b79_178_learned_parameters.fa -s 79,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b80_178_learned_parameters.fa -s 80,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b81_178_learned_parameters.fa -s 81,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b82_178_learned_parameters.fa -s 82,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b83_178_learned_parameters.fa -s 83,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b84_178_learned_parameters.fa -s 84,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b85_178_learned_parameters.fa -s 85,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b86_178_learned_parameters.fa -s 86,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b87_178_learned_parameters.fa -s 87,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b88_178_learned_parameters.fa -s 88,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b89_178_learned_parameters.fa -s 89,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b90_178_learned_parameters.fa -s 90,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b91_178_learned_parameters.fa -s 91,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b92_178_learned_parameters.fa -s 92,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b93_178_learned_parameters.fa -s 93,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b94_178_learned_parameters.fa -s 94,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b95_178_learned_parameters.fa -s 95,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b96_178_learned_parameters.fa -s 96,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b97_178_learned_parameters.fa -s 97,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b98_178_learned_parameters.fa -s 98,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b99_178_learned_parameters.fa -s 99,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b100_178_learned_parameters.fa -s 100,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b101_178_learned_parameters.fa -s 101,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b102_178_learned_parameters.fa -s 102,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b103_178_learned_parameters.fa -s 103,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b104_178_learned_parameters.fa -s 104,178

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140431/iteration1/scatter.0000000012 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140431/iteration1/scatter.0000000012/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_140431   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b105_178_learned_parameters.fa -s 105,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b106_178_learned_parameters.fa -s 106,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b107_178_learned_parameters.fa -s 107,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b108_178_learned_parameters.fa -s 108,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b109_178_learned_parameters.fa -s 109,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b110_178_learned_parameters.fa -s 110,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b111_178_learned_parameters.fa -s 111,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b112_178_learned_parameters.fa -s 112,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b113_178_learned_parameters.fa -s 113,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b114_178_learned_parameters.fa -s 114,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b115_178_learned_parameters.fa -s 115,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b116_178_learned_parameters.fa -s 116,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b117_178_learned_parameters.fa -s 117,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b118_178_learned_parameters.fa -s 118,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b119_178_learned_parameters.fa -s 119,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b120_178_learned_parameters.fa -s 120,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b121_178_learned_parameters.fa -s 121,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b122_178_learned_parameters.fa -s 122,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b123_178_learned_parameters.fa -s 123,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b124_178_learned_parameters.fa -s 124,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b125_178_learned_parameters.fa -s 125,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b126_178_learned_parameters.fa -s 126,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b127_178_learned_parameters.fa -s 127,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b128_178_learned_parameters.fa -s 128,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b129_178_learned_parameters.fa -s 129,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b130_178_learned_parameters.fa -s 130,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b131_178_learned_parameters.fa -s 131,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b132_178_learned_parameters.fa -s 132,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b133_178_learned_parameters.fa -s 133,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b134_178_learned_parameters.fa -s 134,178

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140431/iteration1/scatter.0000000013 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140431/iteration1/scatter.0000000013/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_140431   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b135_178_learned_parameters.fa -s 135,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b136_178_learned_parameters.fa -s 136,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b137_178_learned_parameters.fa -s 137,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b138_178_learned_parameters.fa -s 138,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b139_178_learned_parameters.fa -s 139,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b140_178_learned_parameters.fa -s 140,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b141_178_learned_parameters.fa -s 141,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b142_178_learned_parameters.fa -s 142,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b143_178_learned_parameters.fa -s 143,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b144_178_learned_parameters.fa -s 144,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b145_178_learned_parameters.fa -s 145,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b146_178_learned_parameters.fa -s 146,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b147_178_learned_parameters.fa -s 147,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b148_178_learned_parameters.fa -s 148,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b149_178_learned_parameters.fa -s 149,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b150_178_learned_parameters.fa -s 150,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b151_178_learned_parameters.fa -s 151,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b152_178_learned_parameters.fa -s 152,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b153_178_learned_parameters.fa -s 153,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b154_178_learned_parameters.fa -s 154,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b155_178_learned_parameters.fa -s 155,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b156_178_learned_parameters.fa -s 156,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b157_178_learned_parameters.fa -s 157,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b158_178_learned_parameters.fa -s 158,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b159_178_learned_parameters.fa -s 159,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b160_178_learned_parameters.fa -s 160,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b161_178_learned_parameters.fa -s 161,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b162_178_learned_parameters.fa -s 162,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b163_178_learned_parameters.fa -s 163,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b164_178_learned_parameters.fa -s 164,178

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140431/iteration1/scatter.0000000014 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140431/iteration1/scatter.0000000014/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_140431   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b165_178_learned_parameters.fa -s 165,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b166_178_learned_parameters.fa -s 166,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b167_178_learned_parameters.fa -s 167,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b168_178_learned_parameters.fa -s 168,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b169_178_learned_parameters.fa -s 169,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b170_178_learned_parameters.fa -s 170,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b171_178_learned_parameters.fa -s 171,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b172_178_learned_parameters.fa -s 172,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b173_178_learned_parameters.fa -s 173,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b174_178_learned_parameters.fa -s 174,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b175_178_learned_parameters.fa -s 175,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b176_178_learned_parameters.fa -s 176,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b177_178_learned_parameters.fa -s 177,178 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_118_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_118_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_48_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_48_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_40_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_40_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_116_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_116_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_113_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_113_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_84_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_84_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b0_30_learned_parameters.fa -s 0,30 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b1_30_learned_parameters.fa -s 1,30 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b2_30_learned_parameters.fa -s 2,30 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b3_30_learned_parameters.fa -s 3,30 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b4_30_learned_parameters.fa -s 4,30 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b5_30_learned_parameters.fa -s 5,30 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b6_30_learned_parameters.fa -s 6,30 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b7_30_learned_parameters.fa -s 7,30 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b8_30_learned_parameters.fa -s 8,30 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b9_30_learned_parameters.fa -s 9,30 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b10_30_learned_parameters.fa -s 10,30

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140431/iteration1/scatter.0000000015 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140431/iteration1/scatter.0000000015/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_140431   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b11_30_learned_parameters.fa -s 11,30 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b12_30_learned_parameters.fa -s 12,30 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b13_30_learned_parameters.fa -s 13,30 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b14_30_learned_parameters.fa -s 14,30 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b15_30_learned_parameters.fa -s 15,30 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b16_30_learned_parameters.fa -s 16,30 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b17_30_learned_parameters.fa -s 17,30 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b18_30_learned_parameters.fa -s 18,30 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b19_30_learned_parameters.fa -s 19,30 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b20_30_learned_parameters.fa -s 20,30 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b21_30_learned_parameters.fa -s 21,30 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b22_30_learned_parameters.fa -s 22,30 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b23_30_learned_parameters.fa -s 23,30 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b24_30_learned_parameters.fa -s 24,30 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b25_30_learned_parameters.fa -s 25,30 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b26_30_learned_parameters.fa -s 26,30 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b27_30_learned_parameters.fa -s 27,30 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b28_30_learned_parameters.fa -s 28,30 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b29_30_learned_parameters.fa -s 29,30 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_20_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_20_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_45_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_45_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_60_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_60_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_24_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_24_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_2_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_2_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_57_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_57_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_112_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_112_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_112_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_112_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_3_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_3_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_23_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_23_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_120_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_120_learned_parameters.fa

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140431/iteration1/scatter.0000000016 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140431/iteration1/scatter.0000000016/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_140431   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_107_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_107_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_78_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_78_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_102_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_102_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_55_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_55_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_17_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_17_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_1_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_1_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_9_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_9_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_108_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_108_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_19_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_19_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_19_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_19_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_101_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_101_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_83_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_83_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_129_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_129_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_98_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_98_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_135_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_135_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_28_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_28_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_22_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_22_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_22_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_22_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_68_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_68_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_56_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_56_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_56_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_56_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_4_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_4_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b0_7_learned_parameters.fa -s 0,7 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b1_7_learned_parameters.fa -s 1,7 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b2_7_learned_parameters.fa -s 2,7 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b3_7_learned_parameters.fa -s 3,7 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b4_7_learned_parameters.fa -s 4,7 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b5_7_learned_parameters.fa -s 5,7 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b6_7_learned_parameters.fa -s 6,7 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_35_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_35_learned_parameters.fa

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140431/iteration1/scatter.0000000017 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140431/iteration1/scatter.0000000017/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_140431   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_6_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_6_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_92_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_92_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_92_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_92_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_88_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_88_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_16_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_16_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_96_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_96_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_97_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_97_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_131_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_131_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_77_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_77_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_95_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_95_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_125_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_125_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_5_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_5_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_10_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_10_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_109_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_109_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_30_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_30_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_117_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_117_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_117_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_117_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_103_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_103_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_87_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_87_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_70_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_70_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_34_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_34_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_105_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_105_b0_4_learned_parameters.fa -s 0,4 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_105_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_105_b1_4_learned_parameters.fa -s 1,4 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_105_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_105_b2_4_learned_parameters.fa -s 2,4 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_105_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_105_b3_4_learned_parameters.fa -s 3,4 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_81_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_81_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_62_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_62_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b0_24_learned_parameters.fa -s 0,24 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b1_24_learned_parameters.fa -s 1,24 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b2_24_learned_parameters.fa -s 2,24

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140431/iteration1/scatter.0000000018 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/140431/iteration1/scatter.0000000018/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_140431   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b3_24_learned_parameters.fa -s 3,24 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b4_24_learned_parameters.fa -s 4,24 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b5_24_learned_parameters.fa -s 5,24 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b6_24_learned_parameters.fa -s 6,24 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b7_24_learned_parameters.fa -s 7,24 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b8_24_learned_parameters.fa -s 8,24 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b9_24_learned_parameters.fa -s 9,24 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b10_24_learned_parameters.fa -s 10,24 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b11_24_learned_parameters.fa -s 11,24 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b12_24_learned_parameters.fa -s 12,24 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b13_24_learned_parameters.fa -s 13,24 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b14_24_learned_parameters.fa -s 14,24 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b15_24_learned_parameters.fa -s 15,24 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b16_24_learned_parameters.fa -s 16,24 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b17_24_learned_parameters.fa -s 17,24 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b18_24_learned_parameters.fa -s 18,24 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b19_24_learned_parameters.fa -s 19,24 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b20_24_learned_parameters.fa -s 20,24 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b21_24_learned_parameters.fa -s 21,24 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b22_24_learned_parameters.fa -s 22,24 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b23_24_learned_parameters.fa -s 23,24 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_90_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_90_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_133_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_133_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_126_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_126_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_69_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_69_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_27_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_27_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_27_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_27_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_128_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_128_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_21_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_21_learned_parameters.fa

Finished submitting scatter jobs at Wed Aug  1 18:03:38 2012 in 0.186518200239 minutes
calling:  bsub -E cd "/xchip/tcga" && cd "/xchip/cga" -q cga -R select[tmp>1000 && scratch>1] -e scatter-gather.err.txt -o scatter-gather.out.txt -w ended(scatter_140431) -J gather_140431 -P test -R rusage[mem=16] -sp 65   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Gather.py   0 0.001000

calling:  bsub -E cd "/xchip/cga" -q cga -R select[tmp>1000 && scratch>1] -e iterator.err.txt -o iterator.out.txt -w ended(gather_140431) -J iteration_140431 -P test -sp 65   /xchip/tcga/gdac_prod/source/analysis_pipeline/scripts/scatter-gather-iterator.py /xchip/tcga/gdac_prod/source/analysis_pipeline/scripts/iterative-scatter-gather.py --job-suffix 140431 --priority 65 cga /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/scatter-gather.xml /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/
Path iteration1 exists:  True
